201. Genomically encoded analog memory with precise in vivo DNA writing in living cell populations
- Author
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Massachusetts Institute of Technology. Department of Biological Engineering, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology. Microbiology Graduate Program, Massachusetts Institute of Technology. Research Laboratory of Electronics, Massachusetts Institute of Technology. Synthetic Biology Center, Farzadfard, Fahim, Lu, Timothy K., Lu, Timothy K, Massachusetts Institute of Technology. Department of Biological Engineering, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology. Microbiology Graduate Program, Massachusetts Institute of Technology. Research Laboratory of Electronics, Massachusetts Institute of Technology. Synthetic Biology Center, Farzadfard, Fahim, Lu, Timothy K., and Lu, Timothy K
- Abstract
Cellular memory is crucial to many natural biological processes and sophisticated synthetic biology applications. Existing cellular memories rely on epigenetic switches or recombinases, which are limited in scalability and recording capacity. In this work, we use the DNA of living cell populations as genomic “tape recorders” for the analog and distributed recording of long-term event histories. We describe a platform for generating single-stranded DNA (ssDNA) in vivo in response to arbitrary transcriptional signals. When coexpressed with a recombinase, these intracellularly expressed ssDNAs target specific genomic DNA addresses, resulting in precise mutations that accumulate in cell populations as a function of the magnitude and duration of the inputs. This platform could enable long-term cellular recorders for environmental and biomedical applications, biological state machines, and enhanced genome engineering strategies., National Institutes of Health (U.S.) (New Innovator Award 1DP2OD008435), National Centers for Systems Biology (U.S.) (Grant 1P50GM098792), United States. Office of Naval Research (N000141310424), United States. Defense Advanced Research Projects Agency
- Published
- 2016