388 results on '"Skafidas E"'
Search Results
202. Indoor gigabit optical wireless communication system for personal area networks.
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Ke Wang, Nirmalathas, A., Lim, C., and Skafidas, E.
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- 2010
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203. Antenna effects on the capacity of MIMO communications systems in Rayleigh channels.
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Skafidas, E. and Evans, R.J.
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- 2004
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204. The problem of optimal robust sensor scheduling.
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Savkin, A.V., Evans, R.J., and Skafidas, E.
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- 2000
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205. Scalable and Spectrally Efficient Long-Reach Optical Access Networks Employing Frequency Interleaved Directly Detected Optical OFDM.
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Mehedy, L., Bakaul, M., Nirmalathas, A., and Skafidas, E.
- Abstract
Extending the reach of traditional passive optical networks (PONs) to 100 km and increasing the split ratio beyond 1:64 are promising solutions in future optical access networks. These systems can accommodate increased users at longer distances potentially at low cost. With the increasing demand for higher bandwidths, current networks may soon require that bit rates upgrade to 100 Gb/s and beyond. However, the traditional on–off-keyed PON cannot be scaled up to such bit rates, as very high-speed opto-electronic devices are required that are still maturing. Therefore, to provide a comprehensive solution to these scalability issues of existing PONs, we propose a spectrally efficient (4 bit/s/Hz) 100 Gb/s long-reach PON based on 64 quadrature amplitude modulation (QAM) and frequency interleaved directly detected optical orthogonal-frequency-division multiplexing. We show that the proposed system may operate effectively over 100 km of single mode fiber with a 1024-way split and a receiver bandwidth of 25 GHz. It is also shown that the system can be provisioned to support even higher numbers of users (e.g., 2048, 4096, etc.) simply by varying the order of QAM with little compromise in bit rates. Moreover, the effects of various link parameters such as laser linewidths, fiber dispersion, filter profiles, etc. are also investigated for proper link dimensioning. [ABSTRACT FROM PUBLISHER]
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- 2011
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206. Trajectory approximation based adaptive control for nonlinear systems under matching conditions.
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Skafidas, E., Evans, R.J., Mareels, I.M., and Fradkov, A.
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- 1996
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207. Minimum volume over-bounding ellipsoids for set-based estimation in target tracking applications.
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Saleem, S.K., Evans, M.J., and Skafidas, E.
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- 1996
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208. Optimal measurement scheduling in linear quadratic Gaussian control problems.
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Skafidas, E. and Nerode, A.
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- 1998
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209. Stability of logic-differential systems.
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Skafidas, E. and Evans, R.J.
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- 1998
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210. Optimal controller switching for stochastic systems.
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Skafidas, E., Evans, R.J., and Mareels, I.M.
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- 1997
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211. Analysis of minimum phase properties for non-affine nonlinear systems.
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Nesic, D., Skafidas, E., Mareels, I.M.Y., and Evans, R.J.
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- 1997
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212. Single-Chip Millimeter Wave Radar.
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Klarie Felic, G., Evans, R. J., Hoa Thai Duong, Hoang Viet Le, Li, J., and Skafidas, E.
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RADAR antennas , *WAVE analysis , *SIGNAL processing , *RADIO transmitter-receivers - Abstract
In this article we explore the coming consumer radar era, where tiny single-chip radar systems will he available for just a few dollars. These systems will use sophisticated waveform diversity and adaptive signal processing to optimize performance. Automotive radar concepts developed at the University of Melbourne are discussed, including CMOS RF transceivers, waveform and signal processing, and antennas. [ABSTRACT FROM AUTHOR]
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- 2015
213. Development of a reverse transcription loop-mediated isothermal amplification assay with novel quantitative pH biosensor readout method for SARS-CoV-2 detection.
- Author
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Astari DE, Massi MN, Masadah R, Hardjo M, Natzir R, Erlichster M, Chana G, Skafidas E, Seraj ZI, Elias SM, and Soraya GV
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- Humans, Hydrogen-Ion Concentration, Molecular Diagnostic Techniques methods, Colorimetry methods, COVID-19 Nucleic Acid Testing methods, RNA, Viral genetics, RNA, Viral analysis, Limit of Detection, SARS-CoV-2 genetics, SARS-CoV-2 isolation & purification, Nucleic Acid Amplification Techniques methods, COVID-19 diagnosis, COVID-19 virology, Biosensing Techniques methods, Sensitivity and Specificity
- Abstract
Reverse transcription loop-mediated isothermal amplification (RT-LAMP) is a molecular amplification method that can detect SARS-CoV-2 in a shorter time than the current gold-standard molecular diagnostic reverse transcription-polymerase chain reaction (RT-PCR). However, previously developed RT-LAMP assays have mostly relied on highly subjective visual colorimetric interpretation. In this study, an RT-LAMP assay was developed with quantitative measurement of reaction pH using a novel portable pH biosensor compared to qualitative colorimetric interpretation and gel electrophoresis, with 57 clinical COVID-19 samples used for validation of the test. The LoD of the assay is 10
3 copies/μL. The highest sensitivity was found in the qualitative methods (93.75%), while the highest specificity and likelihood ratio was found in the pH sensor (87.5% and 6.72). On the sensor measurement, a significant difference (p < 0.0001) was observed between the average pH of the RT-PCR (+) COVID-19 (6.15 ± 0.27), while the average pH of the RT-PCR (-) samples (6.72 ± 0.22). Correlation analysis revealed a strong correlation (r = 0.78, p < 0.0001) between the Ct values obtained from RT-PCR with the biosensor pH readout. RT-LAMP with the quantitative pH sensor readout method has the potential to be further developed as an objective molecular assay for rapid and simple detection of SARS-CoV-2., (© 2024 Scandinavian Societies for Pathology, Medical Microbiology and Immunology.)- Published
- 2024
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214. A multifunctional smart field-programmable radio frequency surface.
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Li T, Yu Y, Liu Y, Unnithan RR, McDermott RJ, Schreurs D, Evans R, and Skafidas E
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Antennas that can operate across multiple communication standards have remained a challenge. To address these limitations, we propose a Field-Programmable Radio Frequency Surface (FPRFS), which is based on manipulating current flow on its surface to achieve desirable RF characteristics. In this work, we demonstrate that substantial enhancements in radiation efficiency can be achieved while preserving the high reconfigurability of antenna structures implemented on the FPRFS. This is accomplished by utilizing an asymmetric excitation, directing the excitation to the low-loss contiguous surface, and dynamically manipulating the imaged return current on a segmented ground plane by switches. This important insight allows for adaptable antenna performance that weakly depends on the number of RF switches or their loss. We experimentally validate that FPRFS antennas can achieve efficiencies comparable to traditionally implemented antenna counterparts. This permits the FPRFS to be effectively utilized as a productive antenna and impedance-matching network with real-time reconfigurability., (© 2024. The Author(s).)
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- 2024
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215. Point-of-Care Saliva Osmolarity Testing for the Screening of Hydration in Older Adults With Hypertension.
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Atjo NM, Soraya GV, Natzir R, Kasyim H, Rasyid H, Chana G, Erlichster M, Skafidas E, and Hardjo M
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- Humans, Female, Male, Aged, Middle Aged, Aged, 80 and over, Prospective Studies, Point-of-Care Systems, Hypertension diagnosis, Hypertension drug therapy
- Abstract
Objectives: Older adults have an elevated risk of dehydration, a state with proven detrimental cognitive and physical effects. Furthermore, the use of diuretics by hypertensive patients further compounds this risk. This prospective study investigated the diagnostic accuracy of point-of-care (POC) salivary osmolarity (SOSM) measurement for the detection of dehydration in hypertensive adults with and without diuretic pharmacotherapy., Design: Prospective diagnostic accuracy study., Setting: Home visits to patients recruited from 4 community health centers in West Sulawesi, Indonesia., Participants: A total of 148 hypertensive older adults (57 men, 91 women). The mean ages of male and female patients were 69.4 ± 11.4 and 68.1 ± 7.8 years, respectively., Methods: Hypertensive adults were divided into 2 groups based on the presence of diuretics in their pharmacotherapeutic regimen. First-morning mid-stream urine samples were used to perform urine specific gravity (USG) testing. Same-day SOSM measurements were obtained using a POC saliva testing system., Results: Both USG (P = .0002) and SOSM (P < .0001) were significantly elevated in hypertensive patients with diuretic pharmacotherapy. At a USG threshold of ≥1.030, 86% of diuretic users were classified as dehydrated compared with 55% of non-using participants. A strong correlation was observed between USG and SOSM measurements (r = 0.78, P < .0001). Using a USG threshold of ≥1.030 as a hydration classifier, an SOSM threshold of ≥93 mOsm had a sensitivity of 78.6% and a specificity of 91.1% for detecting dehydration., Conclusions and Implications: Hypertensive patients on diuretics have significantly higher first-morning USG and SOSM values, indicating a higher likelihood of dehydration relative to those on other classes of antihypertensive medication. POC SOSM assessment correlates strongly with first-morning USG assessment, and represents a rapid and noninvasive alternative to urinary hydration assessment that may be applicable for routine use in populations with elevated risk of dehydration., (Copyright © 2022 AMDA – The Society for Post-Acute and Long-Term Care Medicine. Published by Elsevier Inc. All rights reserved.)
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- 2022
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216. A magnetoimpedance biosensor microfluidic platform for detection of glial fibrillary acidic protein in blood for acute stroke classification.
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Sayad A, Uddin SM, Yao S, Wilson H, Chan J, Zhao H, Donnan G, Davis S, Skafidas E, Yan B, and Kwan P
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- Animals, Biomarkers, Cerebral Hemorrhage diagnosis, Cerebral Hemorrhage therapy, Glial Fibrillary Acidic Protein, Humans, Mice, Microfluidics, Biosensing Techniques, Brain Ischemia diagnosis, Stroke diagnosis, Stroke therapy
- Abstract
Acute stroke is the third leading cause of mortality and disability worldwide. Administration of appropriate therapy for acute stroke is critically dependent on timely classification into either ischemic or hemorrhagic subtypes, which have divergent treatment pathways. The current classification method is based on neuroimaging, which generally requires the transport of the patient to a hospital-based facility unless a mobile stroke unit is available. Plasma glial fibrillary acidic protein (GFAP) level has been identified as a useful blood-based biomarker to differentiate stroke subtypes. However, its conventional immunoassay methods are laboratory-based and time-consuming. Novel approaches for rapid stroke classification near the patients are urgently needed. Here, we report the development and testing of a microfluidic-based magnetoimpedance biosensor platform for measuring GFAP levels. The platform consists of a microfluidic chip for GFAP extraction from a blood sample and a magnetoimpedance (MI) biosensor that employs Dynabeads as a magnetic label to capture the GFAP molecules. We demonstrated the detection of recombinant GFAP protein in phosphate-buffered saline (PBS) and in mouse blood samples (detection limit 0.01 ng/mL) and of physiological GFAP in blood and plasma samples (detection limit 1.0 ng/mL) obtained from acute stroke patients. This detection level is within the range of cut-off levels required for clinical stroke subtype differentiation. This platform has the potential to be incorporated into a small device with further development to assist in the classification of acute stroke patients and clinical decision-making at the point-of-care., (Copyright © 2022 Elsevier B.V. All rights reserved.)
- Published
- 2022
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217. Design and Optimisation of Elliptical-Shaped Planar Hall Sensor for Biomedical Applications.
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Uddin SM, Sayad A, Chan J, Skafidas E, and Kwan P
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- Equipment Design, Immunoassay instrumentation, Immunomagnetic Separation, Magnetics, Biosensing Techniques instrumentation
- Abstract
The magnetic beads detection-based immunoassay, also called magneto-immunoassay, has potential applications in point-of-care testing (POCT) due to its unique advantage of minimal background interference from the biological sample and associated reagents. While magnetic field detection technologies are well established for numerous applications in the military, as well as in geology, archaeology, mining, spacecraft, and mobile phones, adaptation into magneto-immunoassay is yet to be explored. The magnetic field biosensors under development tend to be multilayered and require an expensive fabrication process. A low-cost and affordable biosensing platform is required for an effective point-of-care diagnosis in a resource-limited environment. Therefore, we evaluated a single-layered magnetic biosensor in this study to overcome this limitation. The shape-induced magnetic anisotropy-based planar hall effect sensor was recently developed to detect a low-level magnetic field, but was not explored for medical application. In this study, the elliptical-shaped planar hall effect (EPHE) sensor was designed, fabricated, characterized, and optimized for the magneto-immunoassay, specifically. Nine sensor variants were designed and fabricated. A customized measurement setup incorporating a lock-in amplifier was used to quantify 4.5 µm magnetic beads in a droplet. The result indicated that the single-domain behaviour of the magnetic film and larger sensing area with a thinner magnetic film had the highest sensitivity. The developed sensor was tested with a range of magnetic bead concentrations, demonstrating a limit of detection of 200 beads/μL. The sensor performance encourages employing magneto-immunoassay towards developing a low-cost POCT device in the future.
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- 2022
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218. Cortico-cognition coupling in treatment resistant schizophrenia.
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Syeda WT, Wannan CMJ, Merritt AH, Raghava JM, Jayaram M, Velakoulis D, Kristensen TD, Soldatos RF, Tonissen S, Thomas N, Ambrosen KS, Sørensen ME, Fagerlund B, Rostrup E, Glenthøj BY, Skafidas E, Bousman CA, Johnston LA, Everall I, Ebdrup BH, and Pantelis C
- Subjects
- Cognition, Humans, Male, Neuropsychological Tests, Schizophrenia, Treatment-Resistant, Cognition Disorders psychology, Schizophrenia
- Abstract
Background: Brain structural alterations and cognitive dysfunction are independent predictors for poor clinical outcome in schizophrenia, and the associations between these domains remains unclear. We employed a novel, multiblock partial least squares correlation (MB-PLS-C) technique and investigated multivariate cortico-cognitive patterns in patients with treatment-resistant schizophrenia (TRS) and matched healthy controls (HC)., Method: Forty-one TRS patients (age 38.5 ± 9.1, 30 males (M)), and 45 HC (age 40.2 ± 10.6, 29 M) underwent 3T structural MRI. Volumes of 68 brain regions and seven variables from CANTAB covering memory and executive domains were included. Univariate group differences were assessed, followed by the MB-PLS-C analyses to identify group-specific multivariate patterns of cortico-cognitive coupling. Supplementary three-group analyses, which included 23 non-affected first-degree relatives (NAR), were also conducted., Results: Univariate tests demonstrated that TRS patients showed impairments in all seven cognitive tasks and volume reductions in 12 cortical regions following Bonferroni correction. The MB-PLS-C analyses revealed two significant latent variables (LVs) explaining > 90% of the sum-of-squares variance. LV1 explained 78.86% of the sum-of-squares variance, describing a shared, widespread structure-cognitive pattern relevant to both TRS patients and HCs. In contrast, LV2 (13.47% of sum-of-squares variance explained) appeared specific to TRS and comprised a differential cortico-cognitive pattern including frontal and temporal lobes as well as paired associates learning (PAL) and intra-extra dimensional set shifting (IED). Three-group analyses also identified two significant LVs, with NARs more closely resembling healthy controls than TRS patients., Conclusions: MB-PLS-C analyses identified multivariate brain structural-cognitive patterns in the latent space that may provide a TRS signature., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
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- 2022
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219. Pan-Family Assays for Rapid Viral Screening: Reducing Delays in Public Health Responses During Pandemics.
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Erlichster M, Chana G, Zantomio D, Goudey B, and Skafidas E
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- Animals, Humans, Mass Screening, Public Health, SARS-CoV-2, COVID-19, Pandemics
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Background: Coronavirus disease 2019 has highlighted deficiencies in the testing capacity of many developed countries during the early stages of pandemics. Here we describe a strategy using pan-family viral assays to improve early accessibility of large-scale nucleic acid testing., Methods: Coronaviruses and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) were used as a case study for assessing utility of pan-family viral assays during the early stages of a novel pandemic. Specificity of a pan-coronavirus (Pan-CoV) assay for a novel pathogen was assessed using the frequency of common human coronavirus (HCoV) species in key populations. A reported Pan-CoV assay was assessed to determine sensitivity to 60 reference coronaviruses, including SARS-CoV-2. The resilience of the primer target regions of this assay to mutation was assessed in 8893 high-quality SARS-CoV-2 genomes to predict ongoing utility during pandemic progression., Results: Because of common HCoV species, a Pan-CoV assay would return false positives for as few as 1% of asymptomatic adults, but up to 30% of immunocompromised patients with respiratory disease. One-half of reported Pan-CoV assays identify SARS-CoV-2 and with small adjustments can accommodate diverse variation observed in animal coronaviruses. The target region of 1 well-established Pan-CoV assay is highly resistant to mutation compared to species-specific SARS-CoV-2 reverse transcriptase-polymerase chain reaction assays., Conclusions: Despite cross-reactivity with common pathogens, pan-family assays may greatly assist management of emerging pandemics through prioritization of high-resolution testing or isolation measures. Targeting highly conserved genomic regions make pan-family assays robust and resilient to mutation. A strategic stockpile of pan-family assays may improve containment of novel diseases before the availability of species-specific assays., (© The Author(s) 2020. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.)
- Published
- 2021
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220. Meander Thin-Film Biosensor Fabrication to Investigate the Influence of Structural Parameters on the Magneto-Impedance Effect.
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Sayad A, Uddin SM, Chan J, Skafidas E, and Kwan P
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- Electric Impedance, Biosensing Techniques
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Thin-film magneto-impedance (MI) biosensors have attracted significant attention due to their high sensitivity and easy miniaturization. However, further improvement is required to detect weak biomagnetic signals. Here, we report a meander thin-film biosensor preparation to investigate the fabrication parameters influencing the MI effect. Specifically, we hypothesized that an optimal film thickness and sensing area size ratio could be achieved to obtain a maximum MI ratio. A meander multilayer MI biosensor based on a NiFe/Cu/NiFe thin-film was designed and fabricated into 3-, 6-, and 9-turn models with film thicknesses of 3 µm and 6 µm. The 9-turn biosensor resembled the largest sensing area, while the 3- and 6-turn biosensors were designed with identical sensing areas. The results indicated that the NiFe film thickness of 6 µm with a sensing area size of 14.4 mm
2 resembling a 9-turn MI biosensor is the optimal ratio yielding the maximum MI ratio of 238%, which is 70% larger than the 3- and 6-turn structures. The 3- and 6-turn MI biosensors exhibited similar characteristics where the MI ratio peaked at a similar value. Our results suggest that the MI ratio can be increased by increasing the sensing area size and film thickness rather than the number of turns. We showed that an optimal film thickness to sensing area size ratio is required to obtain a high MI ratio. Our findings will be useful for designing highly sensitive MI biosensors capable of detecting low biomagnetic signals.- Published
- 2021
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221. Detection of voluntary dehydration in paediatric populations using non-invasive point-of-care saliva and urine testing.
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Faidah N, Soraya GV, Erlichster M, Natzir R, Chana G, Skafidas E, Hardjo M, Ganda IJ, and Bahar B
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- Child, Humans, Osmolar Concentration, Point-of-Care Systems, Urinalysis, Urine, Dehydration diagnosis, Saliva
- Abstract
Aim: Voluntary dehydration, or lack of fluid intake despite water availability, is common in otherwise healthy children, and can lead to adverse effects. Most dehydration biomarkers are impractical for routine assessment in paediatric populations. This study aimed to assess two non-invasive hydration assessment tools, urine specific gravity (U
SG ) and a novel point-of-care (POC) salivary osmolarity (SOSM) sensor, in healthy children., Methods: Volunteers were tested by colorimetric USG and a handheld SOSM system. Observed values were compared against previous studies to determine hydration status, as was the concordance between parameters., Results: At the common USG threshold of 1.020, 42.4% of the 139 healthy children were dehydrated. The same prevalence was found using the 70-mOSM cut-off value. Comparative analysis of SOSM at varying USG thresholds demonstrated significantly higher SOSM in dehydrated children with a USG ≥ 1.030 (P = 0.002)., Conclusion: At the USG threshold of 1.020 and SOSM threshold of 70 mOSM, 42.4% of healthy children were found to be voluntarily dehydrated. Significantly higher SOSM was observed in dehydrated children (USG ≥ 1.030). As the first study on the utility of POC SOSM measurements for detecting dehydration, these results provide a foundation for future POC characterisation of SOSM in other populations and clinical contexts., (© 2020 Paediatrics and Child Health Division (The Royal Australasian College of Physicians).)- Published
- 2021
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222. Heater Integrated Lab-on-a-Chip Device for Rapid HLA Alleles Amplification towards Prevention of Drug Hypersensitivity.
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Uddin SM, Sayad A, Chan J, Huynh DH, Skafidas E, and Kwan P
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- Alleles, Humans, Molecular Diagnostic Techniques, Nucleic Acid Amplification Techniques, Drug Hypersensitivity, HLA-B Antigens, Lab-On-A-Chip Devices
- Abstract
HLA-B*15:02 screening before administering carbamazepine is recommended to prevent life-threatening hypersensitivity. However, the unavailability of a point-of-care device impedes this screening process. Our research group previously developed a two-step HLA-B*15:02 detection technique utilizing loop-mediated isothermal amplification (LAMP) on the tube, which requires two-stage device development to translate into a portable platform. Here, we report a heater-integrated lab-on-a-chip device for the LAMP amplification, which can rapidly detect HLA-B alleles colorimetrically. A gold-patterned micro-sized heater was integrated into a 3D-printed chip, allowing microfluidic pumping, valving, and incubation. The performance of the chip was tested with color dye. Then LAMP assay was conducted with human genomic DNA samples of known HLA-B genotypes in the LAMP-chip parallel with the tube assay. The LAMP-on-chip results showed a complete match with the LAMP-on-tube assay, demonstrating the detection system's concurrence.
- Published
- 2021
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223. Letter: improved parsimony of genetic risk scores for coeliac disease through refined HLA modelling.
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Erlichster M, Bedo J, Skafidas E, Kwan P, Kowalczyk A, and Goudey B
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- Genetic Predisposition to Disease, Humans, Pilot Projects, Polymorphism, Single Nucleotide, Risk Factors, Celiac Disease genetics
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- 2021
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224. Improved HLA-based prediction of coeliac disease identifies two novel genetic interactions.
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Erlichster M, Bedo J, Skafidas E, Kwan P, Kowalczyk A, and Goudey B
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- Algorithms, Alleles, HLA Antigens metabolism, Humans, Polymorphism, Single Nucleotide, Celiac Disease genetics, Epistasis, Genetic, Genome-Wide Association Study methods, HLA Antigens genetics
- Abstract
Human Leucocyte Antigen (HLA) testing is useful in the clinical work-up of coeliac disease (CD) with high negative but low positive predictive value. We construct a genomic risk score (GRS) using HLA risk genotypes to improve CD prediction and guide exclusion criteria. Imputed HLA genotypes for five European CD case-control GWAS (n > 15,000) were used to construct and validate an interpretable HLA-based risk model (HDQ
15 ), which shows statistically significant improvements in predictive performance upon all previous HLA-based risk models. Conditioning on this model, we find two novel associations, HLA-DQ6.2 and HLA-DQ7.3, that interact significantly with HLA-DQ2.5 (p = 2.51 × 10-9 , 1.99 × 10-7 , respectively). Integrating these novel alleles into a new risk model (HDQ17 ) leads to predictive performance equivalent or better than the strongest reported GRS (GRS228 ) using 228 single nucleotide polymorphisms (SNPs). We also demonstrate that our proposed HLA-based models can be implemented using only six HLA tagging SNPs with statistically equivalent predictive performance. Using insights from our model to guide exclusionary criteria, we find the positive predictive value of CD testing in high-risk populations can be increased by 55%, from 17.5 to 27.1%, while maintaining a negative predictive value above 99%. Our results suggest that HLA typing is currently undervalued in CD assessment.- Published
- 2020
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225. Magneto-Impedance Biosensor Sensitivity: Effect and Enhancement.
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Sayad A, Skafidas E, and Kwan P
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- Electric Impedance, Magnetic Fields, Magnetics, Biosensing Techniques, Nanoparticles
- Abstract
Biosensors based on magneto-impedance (MI) effect are powerful tools for biomedical applications as they are highly sensitive, stable, exhibit fast response, small in size, and have low hysteresis and power consumption. However, the performance of these biosensors is influenced by a variety of factors, including the design, geometry, materials and fabrication procedures. Other less appreciated factors influencing the MI effect include measuring circuit implementation, the material used for construction, geometry of the thin film sensing element, and patterning shapes compatible with the interface microelectronic circuitry. The type magnetic (ferrofluid, Dynabeads, and nanoparticles) and size of the particles, the magnetic particle concentration, magnetic field strength and stray magnetic fields can also affect the sensor sensitivity. Based on these considerations it is proposed that ideal MI biosensor sensitivity could be achieved when the sensor is constructed in sandwich thick magnetic layers with large sensing area in a meander shape, measured with circuitry that provides the lowest possible external inductance at high frequencies, enclosed by a protective layer between magnetic particles and sensing element, and perpendicularly magnetized when detecting high-concentration of magnetic particles.
- Published
- 2020
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226. A meta-analysis of in vitro exposures to weak radiofrequency radiation exposure from mobile phones (1990-2015).
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Halgamuge MN, Skafidas E, and Davis D
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- Adolescent, Animals, Cell Line, Child, Child, Preschool, Electromagnetic Fields, Humans, Male, Mice, Rabbits, Radio Waves adverse effects, Rats, Swine, Cell Phone, Embryonic Development radiation effects, Radiation Exposure adverse effects
- Abstract
To function, mobile phone systems require transmitters that emit and receive radiofrequency signals over an extended geographical area exposing humans in all stages of development ranging from in-utero, early childhood, adolescents and adults. This study evaluates the question of the impact of radiofrequency radiation on living organisms in vitro studies. In this study, we abstract data from 300 peer-reviewed scientific publications (1990-2015) describing 1127 experimental observations in cell-based in vitro models. Our first analysis of these data found that out of 746 human cell experiments, 45.3% indicated cell changes, whereas 54.7% indicated no changes (p = 0.001). Realizing that there are profound distinctions between cell types in terms of age, rate of proliferation and apoptosis, and other characteristics and that RF signals can be characterized in terms of polarity, information content, frequency, Specific Absorption Rate (SAR) and power, we further refined our analysis to determine if there were some distinct properties of negative and positive findings associated with these specific characteristics. We further analyzed the data taking into account the cumulative effect (SAR × exposure time) to acquire the cumulative energy absorption of experiments due to radiofrequency exposure, which we believe, has not been fully considered previously. When the frequency of signals, length and type of exposure, and maturity, rate of growth (doubling time), apoptosis and other properties of individual cell types are considered, our results identify a number of potential non-thermal effects of radiofrequency fields that are restricted to a subset of specific faster-growing less differentiated cell types such as human spermatozoa (based on 19 reported experiments, p-value = 0.002) and human epithelial cells (based on 89 reported experiments, p-value < 0.0001). In contrast, for mature, differentiated adult cells of Glia (p = 0.001) and Glioblastoma (p < 0.0001) and adult human blood lymphocytes (p < 0.0001) there are no statistically significant differences for these more slowly reproducing cell lines. Thus, we show that RF induces significant changes in human cells (45.3%), and in faster-growing rat/mouse cell dataset (47.3%). In parallel with this finding, further analysis of faster-growing cells from other species (chicken, rabbit, pig, frog, snail) indicates that most undergo significant changes (74.4%) when exposed to RF. This study confirms observations from the REFLEX project, Belyaev and others that cellular response varies with signal properties. We concur that differentiation of cell type thus constitutes a critical piece of information and should be useful as a reference for many researchers planning additional studies. Sponsorship bias is also a factor that we did not take into account in this analysis., (Crown Copyright © 2020. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
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227. Structural and functional brain abnormalities in children with schizotypal disorder: a pilot study.
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Wang Y, Harding IH, Testa R, Tonge B, Jones H, Seal M, Ross N, Chan RCK, van Beurden F, Abu-Akel A, Skafidas E, and Pantelis C
- Abstract
Schizotypal disorder lies in the schizophrenia spectrum and is widely studied in adult populations. Schizotypal disorder in children (SDc) is less well described. This study examined brain morphological and functional connectivity abnormalities in SDc (12 SDc and 9 typically developing children), focusing on the default mode and executive control brain networks. Results indicated that SDc is associated with reduced grey matter volume (GMV) in superior and medial frontal gyri, and increased resting-state functional connectivity between the superior frontal gyrus and inferior parietal lobule, compared to typically developing children (cluster-level FWE-corrected p < 0.05). The brain structure abnormality (GMV in left superior frontal gyrus) was correlated with clinical symptoms in SDc (r = -0.66, p = 0.026) and functional connectivity abnormality was correlated with extra-dimensional shifting impairments in all participants (r = 0.62, p = 0.011), suggesting their contribution to the underlying mechanisms of clinical presentation. These preliminary results motivate further work to characterize the neural basis of SDc and its significance as a risk factor for later psychosis.
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- 2020
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228. Recent advances in printable thermoelectric devices: materials, printing techniques, and applications.
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Hossain MS, Li T, Yu Y, Yong J, Bahk JH, and Skafidas E
- Abstract
Thermoelectric devices have great potential as a sustainable energy conversion technology to harvest waste heat and perform spot cooling with high reliability. However, most of the thermoelectric devices use toxic and expensive materials, which limits their application. These materials also require high-temperature fabrication processes, limiting their compatibility with flexible, bio-compatible substrate. Printing electronics is an exciting new technique for fabrication that has enabled a wide array of biocompatible and conformable systems. Being able to print thermoelectric devices allows them to be custom made with much lower cost for their specific application. Significant effort has been directed toward utilizing polymers and other bio-friendly materials for low-cost, lightweight, and flexible thermoelectric devices. Fortunately, many of these materials can be printed using low-temperature printing processes, enabling their fabrication on biocompatible substrates. This review aims to report the recent progress in developing high performance thermoelectric inks for various printing techniques. In addition to the usual thermoelectric performance measures, we also consider the attributes of flexibility and the processing temperatures. Finally, recent advancement of printed device structures is discussed which aims to maximize the temperature difference across the junctions., Competing Interests: There are no conflicts to declare., (This journal is © The Royal Society of Chemistry.)
- Published
- 2020
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229. Direct Electrohydrodynamic Patterning of High-Performance All Metal Oxide Thin-Film Electronics.
- Author
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Liang Y, Yong J, Yu Y, Nirmalathas A, Ganesan K, Evans R, Nasr B, and Skafidas E
- Abstract
In this paper, we propose a scalable approach toward all-printed high-performance metal oxide thin-film transistors (TFTs), using a high-resolution electrohydrodynamic (EHD) printing process. Direct EHD micropatterning of metal oxide TFTs is based on diverse precursor solutions to form semiconducting materials (In
2 O3 , In-Ga-ZnO (IGZO)), conductive metal oxide (Sn-doped In2 O3 (ITO)), as well as aluminum oxide (Al2 O3 ) gate dielectric at low temperatures. The fully printed TFT devices exhibit excellent electron transport characteristics (average electron mobilities of up to 117 cm2 V-1 s-1 ), negligible hysteresis, excellent uniformity, and stable operation at low-operating voltage. Furthermore, integrated logic gates such as NOT and NAND have been printed and demonstrated. All-printed logic with individual gating and symmetric input/output behavior, which is crucial for large-scale integration, is also demonstrated. The devices and fabrication process described in this paper enable high-performance and high-reliability transparent electronics.- Published
- 2019
- Full Text
- View/download PDF
230. Ultrasensitive and label-free biosensor for the detection of Plasmodium falciparum histidine-rich protein II in saliva.
- Author
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Soraya GV, Abeyrathne CD, Buffet C, Huynh DH, Uddin SM, Chan J, Skafidas E, Kwan P, and Rogerson SJ
- Subjects
- Biosensing Techniques instrumentation, Diagnostic Tests, Routine, Electric Impedance, Humans, Miniaturization, Point-of-Care Systems, Sensitivity and Specificity, Antigens, Protozoan analysis, Malaria, Falciparum diagnosis, Plasmodium falciparum metabolism, Protozoan Proteins analysis, Saliva parasitology
- Abstract
Malaria elimination is a global public health priority. To fulfil the demands of elimination diagnostics, we have developed an interdigitated electrode sensor platform targeting the Plasmodium falciparum Histidine Rich Protein 2 (PfHRP2) protein in saliva samples. A protocol for frequency-specific PfHRP2 detection in phosphate buffered saline was developed, yielding a sensitivity of 2.5 pg/mL based on change in impedance magnitude of the sensor. This protocol was adapted and optimized for use in saliva with a sensitivity of 25 pg/mL based on change in resistance. Further validation demonstrated detection in saliva spiked with PfHRP2 from clinical isolates in 8 of 11 samples. With a turnaround time of ~2 hours, the label-free platform based on impedance sensors has the potential for miniaturization into a point-of-care diagnostic device for malaria elimination.
- Published
- 2019
- Full Text
- View/download PDF
231. Rapid Detection of HLA-B*57:01-Expressing Cells Using a Label-Free Interdigitated Electrode Biosensor Platform for Prevention of Abacavir Hypersensitivity in HIV Treatment.
- Author
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Chan J, Soraya GV, Craig L, Uddin SM, Todaro M, Huynh DH, Abeyrathne CD, Kostenko L, McCluskey J, Skafidas E, and Kwan P
- Subjects
- Alleles, Antibodies, Immobilized chemistry, Antibodies, Immobilized immunology, Antibodies, Monoclonal chemistry, Antibodies, Monoclonal immunology, Dideoxynucleosides therapeutic use, Drug Hypersensitivity etiology, Electrochemical Techniques, Electrodes, HIV Infections drug therapy, HLA-B Antigens genetics, HLA-B Antigens immunology, Humans, Biosensing Techniques methods, Dideoxynucleosides adverse effects, Drug Hypersensitivity prevention & control, HLA-B Antigens analysis, Leukocytes, Mononuclear metabolism
- Abstract
Pre-treatment screening of individuals for human leukocyte antigens (HLA) HLA-B*57:01 is recommended for the prevention of life-threatening hypersensitivity reactions to abacavir, a drug widely prescribed for HIV treatment. However, the implementation of screening in clinical practice is hindered by the slow turnaround time and high cost of conventional HLA genotyping methods. We have developed a biosensor platform using interdigitated electrode (IDE) functionalized with a monoclonal antibody to detect cells expressing HLA-B*57:01. This platform was evaluated using cell lines and peripheral blood mononuclear cells expressing different HLA-B alleles. The functionalized IDE sensor was able to specifically capture HLA-B*57:01 cells, resulting in a significant change in the impedance magnitude in 20 min. This IDE platform has the potential to be further developed to enable point-of-care HLA-B*57:01 screening.
- Published
- 2019
- Full Text
- View/download PDF
232. Cross-ethnicity tagging SNPs for HLA alleles associated with adverse drug reaction.
- Author
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Erlichster M, Goudey B, Skafidas E, and Kwan P
- Subjects
- Alleles, Genotype, Humans, Drug-Related Side Effects and Adverse Reactions genetics, Ethnicity genetics, HLA Antigens genetics, Polymorphism, Single Nucleotide genetics
- Abstract
Reduction of adverse drug reaction (ADR) incidence through screening of predisposing human leucocyte antigen (HLA) alleles is a promising approach for many widely used drugs. However, application of these associations has been limited by the cost burden of HLA genotyping. Use of single nucleotide polymorphisms (SNPs) that can approximate ('tag') HLA alleles of interest has been proposed as a cost-effective and simple alternative to conventional genotyping. However, most reported SNP tags have not been validated and there is concern regarding clinical utility of this approach due to tagging inconsistency across different populations. We assess the ability of 67 previously reported and 378 novel tagging SNPs, identified here in 5 HLA reference panels, to tag 15 ADR-associated HLA alleles in a panel of 955 ethnically diverse samples. Tags for 8 HLA alleles of interest were identified with 100% sensitivity and >95% specificity. These SNPs may act as a reliable genotyping approach for the routine screening of patients, without the need to account for patient ethnicity.
- Published
- 2019
- Full Text
- View/download PDF
233. Development of an Ultrasensitive Impedimetric Immunosensor Platform for Detection of Plasmodium Lactate Dehydrogenase.
- Author
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Low YK, Chan J, Soraya GV, Buffet C, Abeyrathne CD, Huynh DH, Skafidas E, Kwan P, and Rogerson SJ
- Subjects
- Electrodes, Feasibility Studies, Humans, Plasmodium immunology, Saliva enzymology, Antibodies, Protozoan immunology, Biosensing Techniques, Electric Impedance, L-Lactate Dehydrogenase analysis, Plasmodium enzymology
- Abstract
Elimination of malaria is a global health priority. Detecting an asymptomatic carrier of Plasmodium parasites to receive treatment is an important step in achieving this goal. Current available tools for detection of malaria parasites are either expensive, lacking in sensitivity for asymptomatic carriers, or low in throughput. We investigated the sensitivity of an impedimetric biosensor targeting the malaria biomarker Plasmodium lactate dehydrogenase (pLDH). Following optimization of the detection protocol, sensor performance was tested using phosphate-buffered saline (PBS), and then saliva samples spiked with pLDH at various concentrations. The presence of pLDH was determined by analyzing the sensor electrical properties before and after sample application. Through comparing percentage changes in impedance magnitude, the sensors distinguished pLDH-spiked PBS from non-spiked PBS at concentrations as low as 250 pg/mL ( p = 0.0008). Percentage changes in impedance magnitude from saliva spiked with 2.5 ng/mL pLDH trended higher than those from non-spiked saliva. These results suggest that these biosensors have the potential to detect concentrations of pLDH up to two logs lower than currently available best-practice diagnostic tools. Successful optimization of this sensor platform would enable more efficient diagnosis of asymptomatic carriers, who can be targeted for treatment, contributing to the elimination of malaria.
- Published
- 2019
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- View/download PDF
234. Fully Solution-Processed Transparent Artificial Neural Network Using Drop-On-Demand Electrohydrodynamic Printing.
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Yong J, Liang Y, Yu Y, Hassan B, Hossain MS, Ganesan K, Unnithan RR, Evans R, Egan G, Chana G, Nasr B, and Skafidas E
- Abstract
Artificial neural networks (ANN), deep learning, and neuromorphic systems are exciting new processing architectures being used to implement a wide variety of intelligent and adaptive systems. To date, these architectures have been primarily realized using traditional complementary metal-oxide-semiconductor (CMOS) processes or otherwise conventional semiconductor fabrication processes. Thus, the high cost associated with the design and fabrication of these circuits has limited the broader scientific community from applying new ideas, and arguably, has slowed research progress in this exciting new area. Solution-processed electronics offer an attractive option for providing low-cost rapid prototyping of neuromorphic devices. This article proposes a novel, wholly solution-based process used to produce low-cost transparent synaptic transistors capable of emulating biological synaptic functioning and thus used to construct ANN. We have demonstrated the fabrication process by constructing an ANN that encodes and decodes a 100 × 100 pixel image. Here, the synaptic weights were configured to achieve the desired image processing functions.
- Published
- 2019
- Full Text
- View/download PDF
235. An interdigitated electrode biosensor platform for rapid HLA-B*15:02 genotyping for prevention of drug hypersensitivity.
- Author
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Soraya GV, Chan J, Nguyen TC, Huynh DH, Abeyrathne CD, Chana G, Todaro M, Skafidas E, and Kwan P
- Subjects
- Alleles, Base Sequence, DNA Probes genetics, Drug Hypersensitivity blood, Electricity, Electrodes, Equipment Design, Genotype, HLA-B Antigens blood, Humans, Immobilized Nucleic Acids genetics, Nucleic Acid Amplification Techniques instrumentation, Point-of-Care Systems, Biosensing Techniques instrumentation, Drug Hypersensitivity genetics, Genotyping Techniques instrumentation, HLA-B Antigens genetics
- Abstract
Prevention of life threatening hypersensitivity reactions to carbamazepine is possible through pre-treatment screening of the associated HLA-B*15:02 risk allele. However, clinical implementation of screening is hindered by the high cost and slow turnaround of conventional HLA typing methods. We have developed an interdigitated electrode (IDE) biosensor platform utilizing loop mediated isothermal amplification (LAMP) that can rapidly detect the HLA-B*15:02 allele. DNA amplification is followed by solid-phase hybridization of LAMP amplicons to a DNA probe immobilized on the IDE sensor surface, resulting in a change in sensor impedance. The testing platform does not require DNA extraction or post-amplification staining, achieving sample-to-answer in 1 h and 20 min. The platform was tested on 27 whole blood samples (14 HLA-B*15:02 positive and 13 negative) with sensitivity of 92.9% and specificity of 84.6% when applying a cutoff of impedance change. Based on these characters the LAMP-IDE platform has potential to be further developed into point-of-care use to help overcome barriers in HLA-B*15:02 screening., (Copyright © 2018. Published by Elsevier B.V.)
- Published
- 2018
- Full Text
- View/download PDF
236. High-speed indoor optical wireless communication system employing a silicon integrated photonic circuit.
- Author
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Wang K, Nirmalathas A, Lim C, Wong E, Alameh K, Li H, and Skafidas E
- Abstract
Beam-steering-based optical wireless technologies are being widely investigated due to the capability of providing high-speed wireless connectivity in indoor applications. However, high-speed indoor optical wireless systems are traditionally realized with discrete bulky components, significantly limiting their practical applications. In this Letter, we demonstrate an infrared optical wireless communication system employing a miniaturized silicon integrated photonic circuit for beam steering for the first time. Experimental results show that up to 12.5 Gb/s optical wireless communication can be achieved with error-free performance over a free-space range of 140 cm, and limited mobility of users can be realized. The experimental results of this Letter open the way for realizing integrated high-speed optical wireless communications.
- Published
- 2018
- Full Text
- View/download PDF
237. Mind the prevalence rate: overestimating the clinical utility of psychiatric diagnostic classifiers.
- Author
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Abu-Akel A, Bousman C, Skafidas E, and Pantelis C
- Subjects
- Autism Spectrum Disorder diagnosis, Autism Spectrum Disorder epidemiology, Genetic Testing, Humans, Mental Disorders epidemiology, Population, Prevalence, Risk Assessment, Risk Factors, Biomarkers, Mental Disorders diagnosis
- Abstract
Currently, there is an intense pursuit of pathognomonic markers and diagnostic ('risk-based') classifiers of psychiatric conditions. Commonly, the epidemiological prevalence of the condition is not factored into the development of these classifiers. By not adjusting for prevalence, classifiers overestimate the potential of their clinical utility. As valid predictive values have critical implications in public health and allocation of resources, development of clinical classifiers should account for the prevalence of psychiatric conditions in both general and high-risk populations. We suggest that classifiers are most likely to be useful when targeting enriched populations.
- Published
- 2018
- Full Text
- View/download PDF
238. Rapid, Loop-Mediated Isothermal Amplification Detection of Celiac Disease Risk Alleles.
- Author
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Erlichster M, Tye-Din JA, Varney MD, Skafidas E, and Kwan P
- Subjects
- Base Sequence, DNA genetics, Humans, Reproducibility of Results, Risk Factors, Sensitivity and Specificity, Alleles, Celiac Disease genetics, Genetic Predisposition to Disease, Nucleic Acid Amplification Techniques methods
- Abstract
Human leukocyte antigen (HLA) genotyping has become a useful investigation in the diagnostic work-up of celiac disease (CD), with utility in risk stratification and screening. However, broad application of this technology has been hindered by the cost and time burden of conventional laboratory-based assays. We have developed and validated CD-loop-mediated isothermal amplification (CD-LAMP), a LAMP assay, which enables rapid identification of the signature CD risk genotypes, HLA-DQ2.5, HLA-DQ8, HLA-DQ2.2, and HLA-DQA1*05. Sample-to-answer is achieved in approximately 65 minutes without DNA purification, thermal cycling, or specialized analytical equipment. CD-LAMP genotyping of samples was 100% concordant with accredited pathology genotyping on a panel of 40 blood and 20 saliva samples. In a panel of 100 purified DNA samples, genotyping of the high-risk DQ2.5 genotype was 100% concordant with accredited pathology genotyping, with slightly reduced sensitivity for the DQ8 genotype (97.1%) and reduced specificity for the DQ8 (93.9%) and DQ2.2 (95.1%) genotypes. CD-LAMP results are easily visualized and instrument free through the addition of a DNA intercalating dye after amplification. Combined with point-of-care antibody testing, CD-LAMP may enable immediate, confident CD diagnosis at a low cost in the clinical setting., (Copyright © 2018 American Society for Investigative Pathology and the Association for Molecular Pathology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
239. Investigating enhanced thermoelectric performance of graphene-based nano-structures.
- Author
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Hossain MS, Huynh DH, Jiang L, Rahman S, Nguyen PD, Al-Dirini F, Hossain F, Bahk JH, and Skafidas E
- Abstract
Recently, it has been demonstrated that graphene nano-ribbons (GNRs) exhibit superior thermoelectric performance compared to graphene sheets. However, the underlying mechanism behind this enhancement has not been systematically investigated and significant opportunity remains for further enhancement of the thermoelectric performance of GNRs by optimizing their charge carrier concentration. In this work, we modulate the carrier concentration of graphene-based nano-structures using a gate voltage and investigate the resulting carrier-concentration-dependent thermoelectric parameters using the Boltzmann transport equations. We investigate the effect of energy dependent scattering time and the role of substrate-induced charge carrier fluctuation in optimizing the Seebeck coefficient and power factor. Our approach predicts the scattering mechanism and the extent of the charge carrier fluctuation in different samples and explains the enhancement of thermoelectric performance of GNR samples. Subsequently, we propose a route towards the enhancement of thermoelectric performance of graphene-based devices which can also be applied to other two-dimensional materials.
- Published
- 2018
- Full Text
- View/download PDF
240. Graphene foam as a biocompatible scaffold for culturing human neurons.
- Author
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D'Abaco GM, Mattei C, Nasr B, Hudson EJ, Alshawaf AJ, Chana G, Everall IP, Nayagam B, Dottori M, and Skafidas E
- Abstract
In this study, we explore the use of electrically active graphene foam as a scaffold for the culture of human-derived neurons. Human embryonic stem cell (hESC)-derived cortical neurons fated as either glutamatergic or GABAergic neuronal phenotypes were cultured on graphene foam. We show that graphene foam is biocompatible for the culture of human neurons, capable of supporting cell viability and differentiation of hESC-derived cortical neurons. Based on the findings, we propose that graphene foam represents a suitable scaffold for engineering neuronal tissue and warrants further investigation as a model for understanding neuronal maturation, function and circuit formation., Competing Interests: We declare we have no competing interests.
- Published
- 2018
- Full Text
- View/download PDF
241. A compact silicon grating coupler based on hollow tapered spot-size converter.
- Author
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Asaduzzaman M, Bakaul M, Skafidas E, and Khandokar MRH
- Abstract
A new compact silicon grating coupler enabling fibre-to-chip light coupling at a minimized taper length is proposed. The proposed coupler, which incorporates a hollow tapered waveguide, converts the spot-size of optical modes from micro- to nano-scales by reducing the lateral dimension from 15 µm to 300 nm at a length equals to 60 µm. The incorporation of such a coupler in photonic integrated circuit causes a physical footprint as small as 81 µm × 15 µm with coupling efficiency and 3-dB coupling bandwidth as high as 72% and 69 nm respectively.
- Published
- 2018
- Full Text
- View/download PDF
242. Self-Organized Nanostructure Modified Microelectrode for Sensitive Electrochemical Glutamate Detection in Stem Cells-Derived Brain Organoids.
- Author
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Nasr B, Chatterton R, Yong JHM, Jamshidi P, D'Abaco GM, Bjorksten AR, Kavehei O, Chana G, Dottori M, and Skafidas E
- Subjects
- Biosensing Techniques methods, Brain cytology, Cells, Cultured, Embryonic Stem Cells cytology, Humans, Neural Stem Cells cytology, Neural Stem Cells metabolism, Organoids cytology, Brain metabolism, Electrochemistry methods, Embryonic Stem Cells metabolism, Glutamic Acid analysis, Microelectrodes, Nanostructures chemistry, Organoids metabolism
- Abstract
Neurons release neurotransmitters such as glutamate to communicate with each other and to coordinate brain functioning. As increased glutamate release is indicative of neuronal maturation and activity, a system that can measure glutamate levels over time within the same tissue and/or culture system is highly advantageous for neurodevelopmental investigation. To address such challenges, we develop for the first time a convenient method to realize functionalized borosilicate glass capillaries with nanostructured texture as an electrochemical biosensor to detect glutamate release from cerebral organoids generated from human embryonic stem cells (hESC) that mimic various brain regions. The biosensor shows a clear catalytic activity toward the oxidation of glutamate with a sensitivity of 93 ± 9.5 nA·µM
-1 ·cm-2 . It was found that the enzyme-modified microelectrodes can detect glutamate in a wide linear range from 5 µM to 0.5 mM with a limit of detection (LOD) down to 5.6 ± 0.2 µM. Measurements were performed within the organoids at different time points and consistent results were obtained. This data demonstrates the reliability of the biosensor as well as its usefulness in measuring glutamate levels across time within the same culture system., Competing Interests: The authors declare no conflict of interest.- Published
- 2018
- Full Text
- View/download PDF
243. Phenotypic and Functional Characterization of Peripheral Sensory Neurons derived from Human Embryonic Stem Cells.
- Author
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Alshawaf AJ, Viventi S, Qiu W, D'Abaco G, Nayagam B, Erlichster M, Chana G, Everall I, Ivanusic J, Skafidas E, and Dottori M
- Subjects
- Biomarkers metabolism, Cell Differentiation, Cell Line, Human Embryonic Stem Cells metabolism, Humans, Microelectrodes, Phenotype, Sensory Receptor Cells metabolism, Cell Culture Techniques methods, Human Embryonic Stem Cells cytology, Peripheral Nervous System cytology, Sensory Receptor Cells cytology
- Abstract
The dorsal root ganglia (DRG) consist of a multitude of sensory neuronal subtypes that function to relay sensory stimuli, including temperature, pressure, pain and position to the central nervous system. Our knowledge of DRG sensory neurons have been predominantly driven by animal studies and considerably less is known about the human DRG. Human embryonic stem cells (hESC) are valuable resource to help close this gap. Our previous studies reported an efficient system for deriving neural crest and DRG sensory neurons from hESC. Here we show that this differentiation system gives rise to heterogeneous populations of sensory neuronal subtypes as demonstrated by phenotypic and functional analyses. Furthermore, using microelectrode arrays the maturation rate of the hESC-derived sensory neuronal cultures was monitored over 8 weeks in culture, showing their spontaneous firing activities starting at about 12 days post-differentiation and reaching maximum firing at about 6 weeks. These studies are highly valuable for developing an in vitro platform to study the diversity of sensory neuronal subtypes found within the human DRG.
- Published
- 2018
- Full Text
- View/download PDF
244. Attentional set-shifting and social abilities in children with schizotypal and comorbid autism spectrum disorders.
- Author
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Abu-Akel A, Testa RR, Jones HP, Ross N, Skafidas E, Tonge B, and Pantelis C
- Subjects
- Autism Spectrum Disorder epidemiology, Child, Comorbidity, Female, Humans, Male, Schizotypal Personality Disorder epidemiology, Attention physiology, Autism Spectrum Disorder physiopathology, Executive Function physiology, Psychomotor Performance physiology, Schizotypal Personality Disorder physiopathology, Social Skills
- Abstract
Objective: While diagnostically independent, autism and schizotypal disorders can co-occur. Their concurrent impact on outcomes and phenotypes has not been investigated. We investigated the impact of comorbid autism and schizotypal disorders in children on executive functioning and socio-pragmatic skills - core features of both disorders., Method: Executive functioning (assessed with the Cambridge Neuropsychological Test Automated Battery) and socio-pragmatic skills (assessed using the Melbourne Assessment of Schizotypy in Kids) were investigated in a total of 67 (6-12 year old) children with autism ( n = 15; M/F = 10/5), schizotypal disorder ( n = 8; M/F = 5/3) and comorbid autism and schizotypal disorder ( n = 12; M/F = 5/7) and typically developing children ( n = 32; M/F = 17/15)., Results: Both the autism and schizotypal disorder groups performed more poorly than the typically developing group on socio-pragmatic skills and overall performance (i.e. number of stages completed) of the intra-/extra-dimensional set-shifting task (all ps < 0.001). Clear distinctions between the autism and schizotypal groups were present in the intra-/extra-dimensional task relative to the typically developing group - the autism group had difficulties with extra-dimensional shifts ( p < 0.001), and the schizotypal disorder group with intra-dimensional shifts ( p = 0.08). Interestingly, the overall performance of the comorbid group on the intra-/extra-dimensional task was not significantly different from the typically developing group, and they were superior to both the autism ( p = 0.019) and schizotypal disorder ( p = 0.042) groups on socio-pragmatic skills., Conclusion: The phenotypical overlap between autism and schizotypal disorders may be precipitated by different cognitive styles and/or mechanisms associated with attention and information processing. We propose that sustaining and switching attention represent two poles of irregularities across the autism and schizotypal spectra, which appear to converge in a compensatory manner in the comorbid group. Our findings highlight the importance of investigating children with a dual diagnosis of autism and schizotypal disorders, and raise intriguing questions about possible mechanisms to explain the attenuated impairment observed in the group of children with comorbid autism and schizotpyal disorders.
- Published
- 2018
- Full Text
- View/download PDF
245. No preliminary evidence of differences in astrocyte density within the white matter of the dorsolateral prefrontal cortex in autism.
- Author
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Lee TT, Skafidas E, Dottori M, Zantomio D, Pantelis C, Everall I, and Chana G
- Subjects
- Adolescent, Adult, Astrocytes pathology, Autism Spectrum Disorder metabolism, Child, Child, Preschool, Glial Fibrillary Acidic Protein metabolism, Humans, Male, Middle Aged, Young Adult, Astrocytes metabolism, Autism Spectrum Disorder pathology, Prefrontal Cortex pathology, White Matter pathology
- Abstract
Background: While evidence for white matter and astrocytic abnormalities exist in autism, a detailed investigation of astrocytes has not been conducted. Such an investigation is further warranted by an increasing role for neuroinflammation in autism pathogenesis, with astrocytes being key players in this process. We present the first study of astrocyte density and morphology within the white matter of the dorsolateral prefrontal cortex (DLPFC) in individuals with autism., Methods: DLPFC formalin-fixed sections containing white matter from individuals with autism ( n = 8, age = 4-51 years) and age-matched controls ( n = 7, age = 4-46 years) were immunostained for glial fibrillary acidic protein (GFAP). Density of astrocytes and other glia were estimated via the optical fractionator, astrocyte somal size estimated via the nucleator, and astrocyte process length via the spaceballs probe., Results: We found no evidence for alteration in astrocyte density within DLPFC white matter of individuals with autism versus controls, together with no differences in astrocyte somal size and process length., Conclusion: Our results suggest that astrocyte abnormalities within the white matter in the DLPFC in autism may be less pronounced than previously thought. However, astrocytic dysregulation may still exist in autism, even in the absence of gross morphological changes. Our lack of evidence for astrocyte abnormalities could have been confounded to an extent by having a small sample size and wide age range, with pathological features potentially restricted to early stages of autism. Nonetheless, future investigations would benefit from assessing functional markers of astrocytes in light of the underlying pathophysiology of autism.
- Published
- 2017
- Full Text
- View/download PDF
246. A Silk Fibroin Bio-Transient Solution Processable Memristor.
- Author
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Yong J, Hassan B, Liang Y, Ganesan K, Rajasekharan R, Evans R, Egan G, Kavehei O, Li J, Chana G, Nasr B, and Skafidas E
- Subjects
- Cell Line, Tumor, Copper chemistry, Electric Conductivity, Electrodes, Humans, L-Lactate Dehydrogenase metabolism, Microscopy, Atomic Force, Oxidation-Reduction, Silver chemistry, Solubility, Biocompatible Materials, Electronics, Fibroins
- Abstract
Today's electronic devices are fabricated using highly toxic materials and processes which limits their applications in environmental sensing applications and mandates complex encapsulation methods in biological and medical applications. This paper proposes a fully resorbable high density bio-compatible and environmentally friendly solution processable memristive crossbar arrays using silk fibroin protein which demonstrated bipolar resistive switching ratio of 10
4 and possesses programmable device lifetime characteristics before the device gracefully bio-degrades, minimizing impact to environment or to the implanted host. Lactate dehydrogenase assays revealed no cytotoxicity on direct exposure to the fabricated device and support their environmentally friendly and biocompatible claims. Moreover, the correlation between the oxidation state of the cations and their tendency in forming conductive filaments with respect to different active electrode materials has been investigated. The experimental results and the numerical model based on electro-thermal effect shows a tight correspondence in predicting the memristive switching process with various combinations of electrodes which provides insight into the morphological changes of conductive filaments in the silk fibroin films.- Published
- 2017
- Full Text
- View/download PDF
247. A tight binding and [Formula: see text] study of monolayer stanene.
- Author
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Jiang L, Marconcini P, Hossian MS, Qiu W, Evans R, Macucci M, and Skafidas E
- Abstract
Stanene is a single layer of tin atoms which has been discovered as an emerging material for quantum spin Hall related applications. In this paper, we present an accurate tight-binding model for single layer stanene near the Fermi level. We parameterized the onsite and hopping energies for the nearest, second nearest, and third nearest neighbor tight-binding method, both without and with spin orbital coupling. We derived the analytical solution for the [Formula: see text]and [Formula: see text] points and numerically investigated the buckling effect on the material electronic properties. In these points of the reciprocal space, we also discuss a corresponding [Formula: see text] description, obtaining the value of the [Formula: see text] parameters both analytically from the tight-binding ones, and numerically, fitting the ab-initio dispersion relations. Our models provide a foundation for large scale atomistic device transport calculations.
- Published
- 2017
- Full Text
- View/download PDF
248. Indoor infrared optical wireless localization system with background light power estimation capability.
- Author
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Wang K, Nirmalathas A, Lim C, Alameh K, Li H, and Skafidas E
- Abstract
The indoor user localization function is in high demand for high-speed wireless communications, navigations and smart-home applications. The optical wireless technology has been used to localize end users in indoor environments. However, its accuracy is typically very limited, due to the ambient light, which is relatively strong. In this paper, a novel high-localization-accuracy optical wireless based indoor localization system, based on the use of the mechanism that estimates background light intensity, is proposed. Both theoretical studies and demonstration experiments are carried out. Experimental results show that the accuracy of the proposed optical wireless indoor localization system is independent on the localization light strength, and that an average localization error as small as 2.5 cm is attained, which is 80% better than the accuracy of previously reported optical wireless indoor localization systems.
- Published
- 2017
- Full Text
- View/download PDF
249. A Label-Free, Quantitative Fecal Hemoglobin Detection Platform for Colorectal Cancer Screening.
- Author
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Soraya GV, Nguyen TC, Abeyrathne CD, Huynh DH, Chan J, Nguyen PD, Nasr B, Chana G, Kwan P, and Skafidas E
- Subjects
- Colorectal Neoplasms diagnosis, Feces chemistry, Hemoglobins chemistry, Humans, Occult Blood, Biosensing Techniques methods, Colorectal Neoplasms blood, Early Detection of Cancer, Hemoglobins isolation & purification
- Abstract
The early detection of colorectal cancer is vital for disease management and patient survival. Fecal hemoglobin detection is a widely-adopted method for screening and early diagnosis. Fecal Immunochemical Test (FIT) is favored over the older generation chemical based Fecal Occult Blood Test (FOBT) as it does not require dietary or drug restrictions, and is specific to human blood from the lower digestive tract. To date, no quantitative FIT platforms are available for use in the point-of-care setting. Here, we report proof of principle data of a novel low cost quantitative fecal immunochemical-based biosensor platform that may be further developed into a point-of-care test in low-resource settings. The label-free prototype has a lower limit of detection (LOD) of 10 µg hemoglobin per gram (Hb/g) of feces, comparable to that of conventional laboratory based quantitative FIT diagnostic systems.
- Published
- 2017
- Full Text
- View/download PDF
250. Plasmonic Colour Filters Based on Coaxial Holes in Aluminium.
- Author
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Rajasekharan Unnithan R, Sun M, He X, Balaur E, Minovich A, Neshev DN, Skafidas E, and Roberts A
- Abstract
Aluminum is an alternative plasmonic material in the visible regions of the spectrum due to its attractive properties such as low cost, high natural abundance, ease of processing, and complementary metal-oxide-semiconductor (CMOS) and liquid crystal display (LCD) compatibility. Here, we present plasmonic colour filters based on coaxial holes in aluminium that operate in the visible range. Using both computational and experimental methods, fine-tuning of resonance peaks through precise geometric control of the coaxial holes is demonstrated. These results will lay the basis for the development of filters in high-resolution liquid crystal displays, RGB-spatial light modulators, liquid crystal over silicon devices and novel displays.
- Published
- 2017
- Full Text
- View/download PDF
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