Zsolt Baranyai, Karen Dybkær, David Hebbelstrup Jensen, Imre Pete, Sarah Mollerup, Lasse Vinner, Ewa Rajpert-De Meyts, Kristín Rós Kjartansdóttir, Eske Willerslev, Thomas Arn Hansen, Stine Raith Richter, Robert Gniadecki, Carlotta Pietroni, Jacob Rosenberg, Alba Rey-Iglesia, David E. Alquezar-Planas, Pernille V. S. Olsen, Jill Levin Langhoff, Ildikó Vereczkey, Ida Broman Nielsen, Jose Alejandro Romero Herrera, Peter Hokland, Anders J. Hansen, Søren Brunak, Maria Asplund, Estrid Høgdall, Hans Erik Johnsen, Line Groth-Pedersen, Thomas Sicheritz-Pontén, Jose M. G. Izarzugaza, Ulrik Baandrup, Randi Holm Jensen, Torben Steiniche, Christian von Buchwald, Jens Friis-Nielsen, Helena Fridholm, Ole Lund, Tobias Mourier, Christopher Barnes, and Lars Peter Nielsen
Background Viruses and other infectious agents cause more than 15% of human cancer cases. High-throughput sequencing-based studies of virus-cancer associations have mainly focused on cancer transcriptome data. Methods In this study, we applied a diverse selection of presequencing enrichment methods targeting all major viral groups, to characterize the viruses present in 197 samples from 18 sample types of cancerous origin. Using high-throughput sequencing, we generated 710 datasets constituting 57 billion sequencing reads. Results Detailed in silico investigation of the viral content, including exclusion of viral artefacts, from de novo assembled contigs and individual sequencing reads yielded a map of the viruses detected. Our data reveal a virome dominated by papillomaviruses, anelloviruses, herpesviruses, and parvoviruses. More than half of the included samples contained 1 or more viruses; however, no link between specific viruses and cancer types were found. Conclusions Our study sheds light on viral presence in cancers and provides highly relevant virome data for future reference., High-throughput sequencing of approximately 200 cancer samples detected viruses from 7 viral families. More than half of the investigated samples contained 1 or more viruses; however, no associations linking specific viruses with specific cancer types were found.