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Arising from: Y.-Z. Yue& C. A. Angell 427, 717-720 (2004); Yue& Angell reply.It has been unclear whether amorphous glassy water heated to around 140-150 K remains glassy until it crystallizes or whether instead it turns into a supercooled and very viscous liquid. Yue and Angell compare the behaviour of glassy water under these conditions to that of hyperquenched inorganic glasses, and claim that water stays glassy as it heats up to its crystallization point; they also find a‘hidden’glass-to-liquid transition at about 169 K. Here we use differential scanning calorimetry (DSC) heating to show that hyperquenched water deposited at 140 K behaves as an ultraviscous liquid, the limiting structure of which depends on the cooling rate-as predicted by theoretical analysis of the liquid-to-glass transition. Our findings are consistent with a glass-to-liquid transition-onset temperature (Tg) in the region of 136 K (refs 3,4), and they indicate that measurements of the liquid's properties may clarify the anomalous properties of supercooled water. [ABSTRACT FROM AUTHOR]

Investigates a low-temperature method for conformational substates of deoxyribonucleic acid. Results of the investigation; Discussion of the investigation.

We report compression and decompression experiments of hexagonal ice in a piston cylinder setup in the temperature range of 170–220 K up to pressures of 1.6 GPa. The main focus is on establishing the effect that an increase in compression rate up to 4000 MPa/min has on the phase changes incurred at high pressures. While at low compression rates, a phase change to stable ice II takes place (in agreement with earlier comprehensive studies), we find that at higher compression rates, increasing fractions and even pure ice III forms from hexagonal ice. We show that the critical compression rate, above which mainly the metastable ice III polymorph is produced, decreases by a factor of 30 when decreasing the temperature from 220 to 170 K. At the highest rate capable with our equipment, we even find formation of an ice V fraction in the mixture, which is metastable with respect to ice II and also metastable with respect to ice III. This indicates that at increasing compression rates, progressively more metastable phases of ice grow from hexagonal ice. Since ices II, III, and V differ very much in, e.g., strength and rheological properties, we have prepared solids of very different mechanical properties just by variation in compression rate. In addition, these metastable phases have stability regions in the phase diagrams only at much higher pressures and temperatures. Therefore, we anticipate that the method of isothermal compression at low temperatures and high compression rates is a tool for the academic and industrial polymorph search with great potential. [ABSTRACT FROM AUTHOR]

High-density amorphous ice was heated at constant pressures of between 0.52 to 1.9 GPa from 77 K up to 240 K. The formed phases were characterized by x-ray diffractograms of samples recovered under liquid N[sub 2] at 1 bar. The (meta)stability domain of ice XII thus revealed extends between ;≈158-212 K from ≈0.7 to ≈1.5 GPa. We further discuss whether ice XII has a low-temperamre region of stability within the ice VI domain. Our (meta)stability domain of ice XII is in a different region of water's phase diagram than that shown by Koza et al. [Phys. Rev. Lett. 84, 4112 (2000)]. [ABSTRACT FROM AUTHOR]

We present an experimental method aimed at measuring mass densities of solids at ambient pressure. The principle of the method is flotation in a mixture of liquid nitrogen and liquid argon, where the mixing ratio is varied until the solid hovers in the liquid mixture. The temperature of such mixtures is in the range of 77–87 K, and therefore, the main advantage of the method is the possibility of determining densities of solid samples, which are instable above 90 K. The accessible density range (∼0.81–1.40 g cm–3) is perfectly suitable for the study of crystalline ice polymorphs and amorphous ices. As a benchmark, we here determine densities of crystalline polymorphs (ices Ih, Ic, II, IV, V, VI, IX, and XII) by flotation and compare them with crystallographic densities. The reproducibility of the method is about ±0.005 g cm–3, and in general, the agreement with crystallographic densities is very good. Furthermore, we show measurements on a range of amorphous ice samples and correlate the density with the dspacing of the first broad halo peak in diffraction experiments. Finally, we discuss the influence of microstructure, in particular voids, on the density for the case of hyperquenched glassy water and cubic ice samples prepared by deposition of micrometer-sized liquid droplets. [ABSTRACT FROM AUTHOR]

Dilatometry experiments on low- and high-density amorphous ices up to 0.30 GPa are presented together with powder x-ray diffraction data. Repeated isobaric heating and cooling cycles reveal three competing processes: irreversible (micro)structural relaxation, reversible relaxation, and (irreversible) crystallization. The third and subsequent heating runs produce identical curves, i.e., irreversible relaxation is absent. We interpret the deviation from linear expansivity in these curves as the onset temperature of the volumetric glass-to-liquid transition (Tg, onset) and report its dependence on pressure. [ABSTRACT FROM AUTHOR]

Polar stratospheric clouds (PSCs) are extremely efficient at catalysing the transformation of photostable chlorine reservoirs into photolabile species, which are actively involved in springtime ozone-depletion events. Why PSCs are such efficient catalysts, however, is not well understood. Here, we investigate the freezing behaviour of ternary HNO3–H2SO4–H2O droplets of micrometric size, which form type II PSC ice particles. We show that on freezing, a phase separation into pure ice and a residual solution coating occurs; this coating does not freeze but transforms into glass below ∼150 K. We find that the coating, which is thicker around young ice crystals, can still be approximately 30 nm around older ice crystals of diameter about 10 µm. These results affect our understanding of PSC microphysics and chemistry and suggest that chlorine-activation reactions are better studied on supercooled HNO3–H2SO4–H2O solutions rather than on a pure ice surface. [ABSTRACT FROM AUTHOR]

Abstract: The Raman spectra of recovered hydrogen ordered H2O and D2O ice XIV were recorded and compared with the spectra of the corresponding hydrogen disordered phase (ice XII). On heating ice XIV, the transition to ice XII is observed. Subsequent cooling leads to the weak reappearance of ice XIV lattice vibrational peaks which demonstrates the reversibility of the hydrogen order ↔ disorder phase transition. However, cooling at ambient pressure produces a less ordered ice XIV than cooling under pressure which implies that pressure favours hydrogen ordering of ice XII. [Copyright &y& Elsevier]

Two hydrogen ordered phases of ice were prepared by cooling the hydrogen disordered ices V and XII under pressure. Previous attempts to unlock the geometrical frustration in hydrogen-bonded structures have focused on doping with potassium hydroxide and have had success in partially increasing the hydrogen ordering in hexagonal ice I (ice Ih). By doping ices V and XII with hydrochloric acid, we have prepared ice XIII and ice XIV, and we analyzed their structures by powder neutron diffraction. The use of hydrogen chloride to release geometrical frustration opens up the possibility of completing the phase diagram of ice. [ABSTRACT FROM AUTHOR]

Sulfurous acid (H2SO3) has never been characterized or isolated on Earth. This is caused by the unfavorable conditions for H2SO3 within Earth''s atmosphere due to the high temperatures, the high water content and the oxidizing environment. Kinetic investigations by means of transition state theory showed that the half-life of H2SO3 at 300 K is 1 day but at 100 K it is increased to 2.7 billion years. Natural conditions to form H2SO3 presumably require cryogenic SO2 or SO2/H2O mixtures and high energy proton irradiation at temperatures around 100 K. Such conditions can be found on the Jupiter moons Io and Europa. Therefore, we calculated IR-spectra of H2SO3 which we compared with Galileo''s spectra of Io and Europa. From the available data we surmise that H2SO3 is present on Io and probably but to a smaller extent on Europa. [Copyright &y& Elsevier]

Using X-band ESR spectroscopy we have studied radicals produced by γ-irradiation at 77 K in hyperquenched glassy water (HGW) doped with thymine, 2′-deoxythymidyne, 2-deoxy-d-ribose, and the equimolar mixture of thymine and 2-deoxy-d-ribose. In HGW matrix the solute molecules are not freeze-concentrated, so the indirect radiation effects on biomolecules can be followed. The results are discussed in terms of the mechanism of radical formation and the role of sugar in radiation damage of nucleosides. [Copyright &y& Elsevier]

Ligands which are able to recognize DNA sequence specifically are of fundamental interest as transcription controlling drugs. Recently a polyamide ligand was developed (ImHpPyPy-β-Dp) which differentiates in a dimeric arrangement between all four possible base pair steps in the minor groove. This is a landmark for the design of DNA binding drugs because it was believed that such a recognition could only be possible in the major groove of DNA. Although the OH groups of the hydroxypyrrole (Hp) moieties of the ligands are responsible for this sequence discrimination, experiments showed that this OH group also reduces the absolute binding constant. We performed a free energy calculation by means of thermodynamic integration in order to find out the influence of this single hydroxyl on DNA binding. In our simulation, we found that the hydroxyl group reduces binding by about 1.3 kcal/mol, which is in excellent agreement with the experimentally determined value of 1.2 kcal/mol. In further MD simulations, the structural reasons for this reduction was estimated. The results of these simulations qualitatively agree with the X-ray structures, but in contrast, in the simulations both (ImHpPyPy-β-Dp and ImPyPyPy-β-Dp) ligand-DNA (d(CCAGTACTGG)[sub 2]) complexes exhibit only slight structural differences. This is consistent with a recently published second pair of similar polyamide DNA crystal structures. Thus, we believe that the explanations resulting from the X-ray structures must be modified. We attribute the large structural differences between the two polyamide DNA complexes to a buffer molecule which binds only in the case of the ImHpPyPyβ-Dp-DNA complex at the region of interest. We propose that the differential hydration of both ligands in the unbound state is responsible for the reduction of the binding constant. Additionally, we suggest an indirect readout of DNA, because of a lengthening of the Watson-Crick base pairs, which possibly... [ABSTRACT FROM AUTHOR]

- A dispersive model of radical accumulation in irradiated solids is discussed by the example of hexagonal ice (Ih) and cubic ice (Ic) obtained by annealing of hyperquenched glassy water at 160 K. The model assumes that radical production upon γ-irradiation is accompanied by their second-order decay, which proceeds according to dispersive kinetics with the time-dependent specific reaction rate k(t) = Bt[sup α-1], where B = constant and α is the dispersion parameter equal to 0.40 for both the hexagonal and cubic ices. The radicals, OH in Ih, and OH plus HO[sub 2] in Ic are produced at the same rate upon γ-irradiation. The observed enhancement of radical accumulation in ice Ic in comparison with Ih is due to the marked decrease of radical recombination in ice Ic. This is rationalized by the hindrance of radical transport in the lattice of ice Ic containing substantial amounts of Bjerrum-type L-defects. [ABSTRACT FROM AUTHOR]

We investigated the PvuII endonuclease with its cognate DNA by means of molecular dynamics simulations. Comparing the complexed DNA with a reference simulation of free DNA, we saw structural changes at the scissile phosphodiester bond. At this GpC step, the enzyme induces the highest twist and axial rise, inclination is increased and the minor groove widened. The distance between the scissile phosphate group and the phosphate group of the following thymine base is shortened significantly, indicating a substrate-assisted catalysis. A feasible reason for this vicinity is the catalytically important amino acid residue lysine 70, which bridges the free oxygen atoms of the successive phosphate groups. Due to this geometry, a compact reaction pocket is formed where a water molecule can be held, thus bringing the reaction partners for hydrolysis into contact. The O1–P–O2 angle of the scissile nucleotide is decreased, probably due to a complexation of the negative oxygen atoms through protein and solvent contacts. [Copyright &y& Elsevier]

Polycrystalline hexagonal ice containing thymine was γ-irradiated at 77 K, and X-band electron paramagnetic resonance spectra of the resulting radicals were recorded at this temperature immediately after irradiation, and after thermal annealing of the samples at temperatures up to 250 K. The examined frozen samples were obtained from hyperquenched glassy aqueous solution containing 0.005 M of thymine, by using two different procedures: (i) crystallization of the glass by heating up to 250 K, and (ii) warming the glass up to room temperature to melt it, and subsequent cooling of the solution in liquid N2. Thymine-derived radicals were detectable only in the samples obtained by crystallization of the glass. We conclude that the extent of solute segregation is less for the frozen aqueous solution made by route (i) than by route (ii). Therefore, the solute is more hydrated in the frozen sample made by route (i) and the primary products of water radiolysis can react with the solute. The present results are compared with those reported for the thymine/hyperquenched glassy water system (Bednarek et al. , J. Phys. Chem. B 103 , 6824 (1999)). [ABSTRACT FROM AUTHOR]

Reports that the complex of B-DNA with polyamides freezes DNA backbone flexibility. Performance of three molecular dynamics simulations; How the beta-tail of the polyamide ligands contributes to binding.

Presents research which studied the possibility of the presence of gaseous carbonic acid in outer space. Formation of solid carbonic acid in outer space; Results of experiments and thermodynamic analyses on crystalline carbonic acid; Free-energy considerations; Carbonic acid's traits in gas phase; Comparison with formic acid; Where gaseous carbonic acid could be present in outer space.

We investigate the downstroke transition from high- (HDA) to low-density amorphous ice (LDA) at 140 (H(2)O) and 143 K (D(2)O). The visual observation of sudden phase separation at 0.07 GPa is evidence of the first-order character of the transition. Powder X-ray diffractograms recorded on chips recovered from the propagating front show a double halo peak indicative of the simultaneous presence of LDA and HDA. By contrast, chips picked from different parts of the sample cylinder show either HDA or LDA. Growth of the low-density form takes place randomly somewhere inside of the high-density matrix. The thermal stability of HDA against transformation to LDA at ambient pressure significantly increases with decreasing recovery pressure and reaches its maximum at 0.07 GPa. A sample decompressed to 0.07 GPa is by ~17 K more stable than an unannealed HDA sample. An increasingly relaxed nature of the sample is also evident from the progressive disappearance of the broad calorimetric relaxation exotherm, preceding the sharp transition to LDA. Finally, we show that two independent thermodynamic paths lead to a very similar state of (relaxed) HDA at 140 K and 0.2 GPa. We argue that these observations imply an equilibrated nature of the amorphous sample in the pressure range of p ≲ 0.2 GPa and speculate that the observation of macroscopic phase separation involves two ultraviscous liquid phases at 140 K. This supports the scenario of a first-order liquid-liquid transition in bulk water., (© 2011 American Chemical Society)

Many acronyms are used in the literature for describing different kinds of amorphous ice, mainly because many different preparation routes and many different sample histories need to be distinguished. We here introduce these amorphous ices and discuss the question of how many of these forms are of relevance in the context of polyamorphism. We employ the criterion of reversible transitions between amorphous "states" in finite intervals of pressure and temperature to discriminate between independent metastable amorphous "states" and between "substates" of the same amorphous "state". We argue that the experimental evidence suggests we should consider there to be three polyamorphic "states" of ice, namely low-(LDA), high-(HDA) and very high-density amorphous ice (VHDA). In addition to the realization of reversible transitions between them, they differ in terms of their properties, e.g., compressibility, or number of "interstitial" water molecules. Thus they cannot be regarded as structurally relaxed variants of each other and so we suggest considering them as three distinct megabasins in an energy landscape visualization., (© The Owner Societies 2011)

A range of techniques has so far been employed for producing amorphous aqueous solutions. In case of aqueous tetrahydrofuran (THF) this comprises hyperquenching of liquid droplets, vapour co-deposition and pressure-induced amorphization of the crystalline cubic structure II clathrate. All of these samples are thermally labile and crystallize at temperatures above 110 K. We here outline a variant of the pressure-amorphization protocol developed by Suzuki [Phys. Rev. B, 2004, 70, 172108], which results in a highly crystallization resistant amorphous THF hydrate. The hydrate produced according to our protocol (annealing to 180 K at 1.8 GPa rather than to 150 K at 1.5 GPa) does not transform to the cubic structure II THF clathrate even at 150 K. We track the reason for this higher stability to the presence of crystalline remnants when following the Suzuki protocol, which are removed when using our protocol involving higher pressures and an annealing step. These crystalline remnants later serve as crystallization seeds lowering the thermal stability of the amorphous sample. Our protocol thus makes a purely amorphous THF hydrate available to the research community. We use powder X-ray diffraction to study the process of nucleation and slow crystal growth in the temperature range 160-200 K and find that the local cage structure and periodicity of the fully crystalline hydrate develops even at the earliest stages of crystallization, when the "clathrate crystal" has a size of about two unit cells.

We here report differential scanning calorimetry (DSC) scans recorded by repeatedly heating the H(2)O (D(2)O) low density amorph (LDA) which was made by isothermal decompression of very high-density amorphous ice (VHDA) at 140 K from 1.1 to 0.006 GPa. These DSC scans show a glass --> liquid transition endotherm with an onset temperature (T(g)) of approximately 137 (140) K at a heating rate of 30 K min(-1) accompanied by an increase in heat capacity of approximately 1.7 (1.5) J K(-1) mol(-1). We establish the reversibility of this effect by thermally cycling between its glassy state below 137 K and its highly viscous liquid state at 149 K. All calorimetric signatures, including H/D isotope effect, are highly similar to the signatures in hyperquenched glassy water (HGW). We argue that the observation of almost identical calorimetric traces for HGW and LDA implies that there is no need to reassign HGWs T(g) to higher temperatures provided that the viscous liquid state connected to both LDA and HGW behaves as an ideally "strong" liquid in the Angell classification. We furthermore show that LDA prepared by isothermal decompression of VHDA is more crystallization-resistant than LDA made from high-density amorphous ice (HDA) by isobaric warming. We suggest that the former route via VHDA removes "nanocrystalline remnants" in LDA which are still present in the latter after pressure-amorphization of hexagonal ice to HDA at 77 K.

A new phase of ice, named ice XV, has been identified and its structure determined by neutron diffraction. Ice XV is the hydrogen-ordered counterpart of ice VI and is thermodynamically stable at temperatures below approximately 130 K in the 0.8 to 1.5 GPa pressure range. The regions of stability in the medium pressure range of the phase diagram have thus been finally mapped, with only hydrogen-ordered phases stable at 0 K. The ordered ice XV structure is antiferroelectric (P1), in clear disagreement with recent theoretical calculations predicting ferroelectric ordering (Cc).

What's the matter? The laboratory Raman spectra for carbonic acid (H(2)CO(3)), both for the beta-polymorph and its amorphous state, are required to detect carbonic acid on the surface of the pole caps of Mars in 2009, when the Mars Microbeam Raman Spectrometer lands on the planet. The picture shows a martian crater with ice of unknown composition, possibly containing carbonic acid (image adapted from DLR, with permission from ESA, DLR, and FU Berlin--G. Neukum).

Doped ice V samples made from solutions containing 0.01 M HCl (DCl), HF (DF), or KOH (KOD) in H(2)O (D(2)O) were slow-cooled from 250 to 77 K at 0.5 GPa. The effect of the dopant on the hydrogen disorder --> order transition and formation of hydrogen ordered ice XIII was studied by differential scanning calorimetry (DSC) with samples recovered at 77 K. DSC scans of acid-doped samples are consistent with a reversible ice XIII <--> ice V phase transition at ambient pressure, showing an endothermic peak on heating due to the hydrogen ordered ice XIII --> disordered ice V phase transition, and an exothermic peak on subsequent cooling due to the ice V --> ice XIII phase transition. The equilibrium temperature (T(o)) for the ice V <--> ice XIII phase transition is 112 K for both HCl doped H(2)O and DCl doped D(2)O. From the maximal enthalpy change of 250 J mol(-1) on the ice XIII --> ice V phase transition and T(o) of 112 K, the change in configurational entropy for the ice XIII --> ice V transition is calculated as 2.23 J mol(-1) K(-1) which is 66% of the Pauling entropy. For HCl, the most effective dopant, the influence of HCl concentration on the formation of ice XIII was determined: on decreasing the concentration of HCl from 0.01 to 0.001 M, its effectiveness is only slightly lowered. However, further HCl decrease to 0.0001 M drastically lowered its effectiveness. HF (DF) doping is less effective in inducing formation of ice XIII than HCl (DCl) doping. On heating at a rate of 5 K min(-1), kinetic unfreezing starts in pure ice V at approximately 132 K, whereas in acid doped ice XIII it starts at about 105 K due to acceleration of reorientation of water molecules. KOH doping does not lead to formation of hydrogen ordered ice XIII, a result which is consistent with our powder neutron diffraction study (C. G. Salzmann, P. G. Radaelli, A. Hallbrucker, E. Mayer, J. L. Finney, Science, 2006, 311, 1758). We further conjecture whether or not ice XIII has a stable region in the water/ice phase diagram, and on a metastable triple point where ice XIII, ice V and ice II are in equilibrium.

Hyperquenched glassy water (HGW) has been suggested as the best model for liquid water, to be used in low-temperature studies of indirect radiation effects on dissolved biomolecules (Bednarek et al. J. Am. Chem. Soc. 1996, 118, 9387). In the present work, these effects are examined by X-band electron spin resonance spectroscopy (ESR) in gamma-irradiated HGW matrix containing 2'-deoxyguanosine-5'-monophosphate. Analysis of the complex ESR spectra indicates that, in addition to OH(*) and HO2(*) radicals generated by water radiolysis, three species are trapped at 77 K:(i) G(C8)H(*) radical, the H-adduct to the double bond at C8; (ii) G(- *) radical anion, the product of electron scavenging by the aromatic ring of the base; and (iii) dR(-H)(*) radicals formed by H abstraction from the sugar moiety, predominantly at the C'5 position. We discuss the yields of the radicals, their thermal stability and transformations, as well as the effect of photobleaching. This study confirms our earlier suggestion that in HGW the H atom addition/abstraction products are created at 77 K in competition with HO2(*) radicals, in a concerted process following ionization of water molecule at L-type defect sites of the H-bonded matrix. The lack of OH(*) reactivity toward the solute suggests that the H-bonded structure in HGW is much more effective in recombining OH(*) radicals than that of aqueous glasses obtained from highly concentrated electrolyte solutions. Furthermore, complementary experiments for the neat matrix have provided evidence that HO2(*) radicals are not the product of H atom reaction with molecular oxygen, possibly generated by ultrasounds used in the process of sample preparation.

Layers of glassy methanolic (aqueous) solutions of KHCO3 and HCl were deposited sequentially at 78 K on a CsI window, and their reaction on heating in vacuo in steps from 78 to 230 K was followed by Fourier transform infrared (FTIR) spectroscopy. After removal of solvent and excess HCl, IR spectra revealed formation of two distinct states of amorphous carbonic acid (H2CO3), depending on whether KHCO3 and HCl had been dissolved in methanol or in water, and of their phase transition to either crystalline alpha- or beta-H2CO3. The main spectral features in the IR spectra of alpha- and beta-H2CO3 are observable already in those of the two amorphous H2CO3 forms. This indicates that H-bond connectivity or conformational state in the two crystalline phases is on the whole already developed in the two amorphous forms. The amorphous nature of the precursors to the two crystalline polymorphs is confirmed using powder X-ray diffraction. These diffractograms also show that alpha- and beta-amorphous H2CO3 are two distinct structural states. The variety of structural motifs found within a few kJ/mol in a computational search for possible crystal structures provides a plausible rationalization for (a) the observation of more than one amorphous form and (b) the retention of the motif observed in the amorphous form in the corresponding crystalline form. The polyamorphism inferred for carbonic acid from our FTIR spectroscopic and powder X-ray diffraction studies is special since two different crystalline states are linked to two distinct amorphous states. We surmise that the two amorphous states of H2CO3 are connected by a first-order-like phase transition.

We report a novel method of detecting the glass --> liquid transition at high pressures, which comprises measuring the relative volume change incurred upon heating glassy samples into the liquid state. We show data on glycerol in the pressure range 0.050-1.00 GPa to demonstrate the viability of the method. The reversible glass --> liquid transition is observed by means of a kink in the relative volume change on heating the sample isobarically, which is attributed to the glass --> liquid transition temperature Tg. This kink can only be observed in the second and subsequent heating cycles since it is superposed by a compaction in the first heating cycle. The isobaric thermal expansivity beta, which is closely related to the first derivative of this curve, shows the features expected for a glass --> liquid transition, including a sharp rise of beta(glass) in a narrow temperature interval to beta(viscous liquid) and an accompanying overshoot effect. Both Tg and the size of the overshoot effect vary in accordance with theory upon changing the ratio of cooling to heating rates. From the shape of this curve the onset, inflection, overshoot peak, and endpoint of the glass --> liquid transition can be extracted, which can be employed to calculate the reduced glass transition width as a measure for the fragility of the liquid. Comparison with literature data allows quantifying the accuracy of the liquid's thermal expansivity beta to be at least +/-10%, while the error in beta is significantly larger for the expansivity of the glassy state. The reproducibility of the glass --> liquid transition temperature Tg is better than +/-2 K. Our glycerol data confirms literature studies showing a nonlinear increase of Tg with increasing pressure (approximately 35 K/GPa on average), which is accompanied by an increase in fragility.

Raman spectra of recovered ordered H(2)O (D(2)O) ice XIII doped with 0.01 M HCl (DCl) recorded in vacuo at 80 K are reported in the range 3600-200 cm(-1). The bands are assigned to the various types of modes on the basis of isotope ratios. On thermal cycling between 80 and 120 K, the reversible phase transition to disordered ice V is observed. The remarkable effect of HCl (DCl) on orientational ordering in ice V and its phase transition to ordered ice XIII, first reported in a powder neutron diffraction study of DCl doped D(2)O ice V (C. G. Salzmann, P. G. Radaelli, A. Hallbrucker, E. Mayer, J. L. Finney, Science, 2006, 311, 1758), is demonstrated by Raman spectroscopy and discussed. The dopants KOH and HF have only a minor effect on hydrogen ordering in ice V, as shown by the Raman spectra.

The exact nature of the relationship between high-density (HDA) and very-high-density (VHDA) amorphous ice is unknown at present. Here we review the relation between HDA and VHDA, concentrating on experimental aspects and discuss these with respect to the relation between low-density amorphous ice (LDA) and HDA. On compressing LDA at 125 K up to 1.5 GPa, two distinct density steps are observable in the pressure-density curves which correspond to the LDA --> HDA and HDA --> VHDA conversion. This stepwise formation process LDA --> HDA --> VHDA at 125 K is the first unambiguous observation of a stepwise amorphous-amorphous-amorphous transformation sequence. Density values of amorphous ice obtained in situ between 0.3 and 1.9 GPa on isobaric heating up to the temperatures of crystallization show a pronounced change of slope at ca. 0.8 GPa which could indicate formation of a distinct phase. We infer that the relation between HDA and VHDA is very similar to that between LDA and HDA except for a higher activation barrier between the former. We further discuss the two options of thermodynamic phase transition versus kinetic densification for the HDA --> VHDA conversion.

We report in situ density values of amorphous ice obtained between 0.3 and 1.9 GPa and 144 to 183 K. Starting from high-density amorphous ice made by pressure-amorphizing hexagonal ice at 77 K, samples were heated at a constant pressure until crystallization to high-pressure ices occurred. Densities of amorphous ice were calculated from those of high-pressure ice mixtures and the volume change on crystallization. In the density versus pressure plot a pronounced change of slope occurs at approximately 0.8 GPa, with a slope of 0.21 g cm(-3) GPa(-1) below 0.8 GPa and a slope of 0.10 g cm(-3) GPa(-1) above 0.8 GPa. Both X-ray diffractograms and Raman spectra of recovered samples show that major structural changes occur up to approximately 0.8 GPa, developing towards those of very high-density amorphous ice reported by (T. Loerting, C. Salzmann, I. Kohl, E. Mayer and A. Hallbrucker, Phys. Chem. Chem. Phys., 2001, 3, 5355) and that further increase of pressure has only a minor effect. In addition, the effect of annealing temperature (T(A)) at a given pressure on the structural changes was studied by Raman spectra of recovered samples in the coupled O-H and decoupled O-D stretching band region: at 0.5 GPa structural changes are observed between approximately 100-116 K, at 1.17 GPa between approximately 121-130 K. Further increase of T(A) or of annealing time has no effect, thus indicating that the samples are fully relaxed. We conclude that mainly irreversible structural changes between 0.3 to approximately 0.8 GPa lead to the pronounced increase in density, whereas above approximately 0.8 GPa the density increase is dominated to a large extent by reversible elastic compression. These results seem consistent with simulation studies by (R. Martonàk, D. Donadio and M. Parrinello, J. Chem. Phys., 2005, 122, 134501) where substantial reconstruction of the topology of the hydrogen bonded network and changes in the ring statistics from e.g. mainly six-membered to mainly nine-membered rings were observed on pressure increase up to 0.9 GPa and further pressure increase had little effect.

On compressing low-density amorphous ice (LDA) at 125 K up to 1.6 GPa, two distinct density steps accompanied by heat evolution are observable in pressure-density curves. Samples recovered to 77 K and 1 bar after the first and second steps show the x-ray diffraction pattern of high-density amorphous ice (HDA) and very HDA (VHDA), respectively. The compression of the once formed HDA takes place linearly in density up to 0.95 GPa, where nonlinear densification and HDA --> VHDA conversion is initiated. This implies a stepwise formation process LDA--> HDA --> VHDA at 125 K, which is to the best of our knowledge the first observation of a stepwise amorphous-amorphous-amorphous transformation sequence. We infer that the relation of HDA and VHDA is very similar to the relation between LDA and HDA except for a higher activation barrier between the former. We discuss the two options of thermodynamic versus kinetic origin of the phenomenon.

Micrometre-sized water droplets were hyperquenched on a solid substrate held at selected temperatures between 150 and 77 K. These samples were characterized by differential scanning calorimetry (DSC) and X-ray diffraction. 140 K is the upper temperature limit to obtain mainly amorphous samples on deposition within 16-37 min. DSC scans of glassy water prepared at 140 K exhibit on heating an endothermic step assignable to glass --> liquid transition, with an onset temperature (T(g)) of 136 +/- 2 K on heating at 30 K min(-1). For T(g) of approximately 136 K, water relaxes during deposition at 140 K for 16 min, moving towards metastable equilibrium. The apparent increase in heat capacity (deltaC(p)) depends, for a given rate of heating, on the rate of prior cooling, and a so-called overshoot develops. 140 K deposits cooled at a rate of 5, 2 or 0.2 K min(-1) show on subsequent reheating at a rate of 30 K min(-1) deltaC(p) values of 0.7, 1.1 and 1.7 J K(-1) mol(-1). This is consistent with liquid-like relaxation at 140 K, and it indicates that different limiting structures are obtained. When these 140 K deposits are in addition annealed at 130 K for 90 min, after slow-cooling at 5, 2 or 0.2 K min(-1), their deltaC(p) values on subsequent reheating are similar to those of hyperquenched glassy water (HGW) deposits made at 77 K and annealed at 130 K. Thus, the previous deltaC(p) value of 1.6 J K(-1) mol(-1) obtained with glassy water samples annealed at 130 K (A. Hallbrucker, E. Mayer and G. P. Johari, Philos. Mag. B, 1989, 60, 179) must be an upper-bound limit because it contains a contribution from an overshoot. The T(g) value of 140 K deposits, which had relaxed during deposition towards metastable equilibrium, is within experimental error the same as that of 140 K deposits annealed in addition at 130 K. This contradicts Yue and Angell's (Y. Yue and C. Angell, Nature, 2004, 427, 717) claim for assigning the endothermic step to a sub-T(g) peak or a "shadow" T(g). Our new data further support the proposed fragile-to-strong transition on cooling liquid water from ambient temperature into the deeply supercooled and glassy state. We also describe in detail experimental aspects to obtain HGW specimens, show the ultrastructure of the deposits using electron microscopy, and discuss the mechanism of our hyperquenching method.

CpG methylation determines a variety of biological functions of DNA. The methylation signal is interpreted by proteins containing a methyl-CpG binding domain (MBDs). Based on the NMR structure of MBD1 complexed with methylated DNA we analysed the recognition mode by means of molecular dynamics simulations. As the protein is monomeric and recognizes a symmetrically methylated CpG step, the recognition mode is an asymmetric one. We find that the two methyl groups do not contribute equally to the binding energy. One methyl group is associated with the major part of the binding energy and the other one nearly does not contribute at all. The contribution of the two cytosine methyl groups to binding energy is calculated to be -3.6 kcal/mol. This implies a contribution of greater than two orders of magnitude to the binding constant. The conserved amino acid Asp32 is known to be essential for DNA binding by MBD1, but so far no direct contact with DNA has been observed. We detected a direct DNA base contact to Asp32. This could be the main reason for the importance of this amino acid. MBD contacts DNA exclusively in the major groove, the minor groove is reserved for histone contacts. We found a deformation of the minor groove shape due to complexation by MBD1, which indicates an information transfer between the major and the minor groove.

The characterization and isolation of sulfurous acid (H2SO3) have never been accomplished and thus still remain one of the greatest open challenges of inorganic chemistry. It is known that H2SO3 is thermodynamically unstable. In this study, however, we show that a Ci-symmetric dimer of sulfurous acid (H2SO3)2 is 3.5 kcal mol-1 more stable than its dissociation products SO2 and H2O at 77 K. Additionally, we have investigated the kinetic stability of the sulfurous acid monomer with respect to dissociation into SO2 and H2O and the kinetic isotope effect (KIE) on this reaction by transition-state theory. At 77 K, the half-life of H2SO3 is 15 x 10(9) years, but for the deuterated molecule (D2SO3) it increases to 7.9 x 10(26) years. At room temperature, the half-life of sulfurous acid is only 24 hours; however, a KIE of 3.2 x 10(4) increases it to a remarkable 90 years. Water is an efficient catalyst for the dissociation reaction since it reduces the reaction barrier tremendously. With the aid of two water molecules, one can observe a change in the reaction mechanism for sulfurous acid decomposition with increasing temperature. The most likely mechanism below 170 K is via an eight-membered transition-state ring; yet, above 170 K, a mechanism with a six-membered transition state ring becomes the predominant one. For deuterated sulfurous acid, this change in reaction mechanism can be observed at 120 K. Consequently, between 120 and 170 K, different predominant reaction mechanisms occur for the decomposition of normal and deuterated sulfurous acid when assisted by two water molecules. However, the much longer half-life of deuterated sulfurous acid and the stability of the sulfurous acid dimer at 77 K are encouraging for future synthesis and characterization under laboratory conditions.

Although the trp-repressor-operator complex is one of the best studied transcriptional controlling systems, some questions regarding the specific recognition of the operator by the repressor remain. We performed a 2.35 ns long molecular dynamics simulation to clarify the influence of the two B-DNA backbone conformational substates B(I) and B(II) on complexation. The trp-repressor-operator is an ideal biological system for this study because experimental results have already figured out that the interaction between the internucleotide phosphates and the protein is essential for the formation of the high affinity complex. Our simulation supports these results, but more important it shows a strong correlation between the B(I)/B(II) phosphate substate and the number of interactions with this phosphate. In particular the B(I) <==> B(II) transitions occur synchronous to hydrogen bond breaking or formation. To the best of our knowledge, this was observed for the first time. Thus, we conclude that the sequence specific B(I)/B(II) behavior contributes via indirect readout to sequence specific recognition. These results have implication for the design of transcription-controlling drugs in view of the recently published influence of minor groove binders on the B(I)/B(II) pattern. The simulation also agrees with crystallographically observed hydration sites. This is consistent with experimental results and indicates the correctness of the model used.

Dry carbonic acid has recently been shown to be kinetically stable even at room temperature. Addition of water molecules reduces this stability significantly, and the decomposition (H2CO3 + nH2O --> (n+1)H2O + CO2) is extremely accelerated for n = 1, 2, 3. By including two water molecules, a reaction rate that is a factor of 3000 below the experimental one (10 s(-1)) at room temperature was found. In order to further remove the gap between experiment and theory, we increased the number of water molecules involved to 3 and took into consideration different mechanisms for thorough elucidation of the reaction. A mechanism whereby the reaction proceedes via a six-membered transition state turns out to be the most efficient one over the whole examined temperature range. The determined reaction rates approach experimental values in aqueous solution reasonably well; most especially, a significant increase in the rates in comparison to the decomposition reaction with fewer water molecules is found. Further agreement with experiment is found in the kinetic isotope effects (KIE) for the deuterated species. For water-free carbonic acid, the KIE (i.e., kH2CO3/kD2CO3) for the decomposition reaction is predicted to be 220 at 300 K, whereas it amounts to 2.2-3.0 for the investigated mechanisms including three water molecules. This result is therefore reasonably close to the experimental value of 2 (at 300 K). These KIEs are in much better accordance with the experiment than the KIE for decomposition with fewer water entities.