13 results on '"Özlem Temiz Arpaci"'
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2. Synthesis, antimicrobial activity, density functional modelling and molecular docking with COVID-19 main protease studies of benzoxazole derivative: 2-(p-chloro-benzyl)-5-[3-(4-ethly-1-piperazynl) propionamido]-benzoxazole
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Özlem Temiz Arpaci, Celal Tuğrul Zeyrek, Mustafa Arisoy, and Fatma Kaynak Onurdağ
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Coronavirus disease 2019 (COVID-19) ,Stereochemistry ,medicine.medical_treatment ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,Article ,Analytical Chemistry ,Inorganic Chemistry ,chemistry.chemical_compound ,Dpectroscopy ,medicine ,Molecule ,Spectroscopy ,Benzoxazoles ,Protease ,010405 organic chemistry ,Organic Chemistry ,Benzoxazole ,Antimicrobial ,0104 chemical sciences ,chemistry ,Molecular docking ,Density functional theory ,Covid-19 ,Derivative (chemistry) - Abstract
This study contains synthesis, antimicrobial activity, density functional modelling and molecular docking studies of benzoxazole derivative: 2-(p-chloro-benzyl)-5-[3-(4-ethly-1-piperazynl) propionamido]-benzoxazole. The synthetic procedure of investigated compound is given in detail. The newly synthesized benzoxazole compound and standard drugs were evaluated for their antimicrobial activity against some Gram-positive, Gram-negative bacteria and fungus C. albicans and their drug-resistant isolates. The benzoxazole compound has been characterized by using 1H-NMR, IR and MASS spectrometry and elemental analysis techniques. The molecular structure of the compound in the ground state has been modelling using density functional theory (DFT) with B3LYP/6-311++g(d,p) level. The molecular docking of 2-(p-chloro-benzyl)-5-[3-(4-ethly-1-piperazynl) propionamido]-benzoxazole with COVID-19 main protease has been also performed by using optimized geometry and the experimentally determined dimensional structure of the main protease (M-pro) of COVID-19., Graphical abstract Image, graphical abstract
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- 2021
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3. Evaluation of Activity of Some 2,5-Disubstituted Benzoxazole Derivatives against Acetylcholinesterase, Butyrylcholinesterase and Tyrosinase: ADME Prediction, DFT and Comparative Molecular Docking Studies
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Ilkay Erdogan Orhan, Özlem Temiz Arpaci, Ismail Celik, Meryem Erol, and Fatma Sezer Senol
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Polymers and Plastics ,010405 organic chemistry ,Stereochemistry ,Tyrosinase ,Organic Chemistry ,Benzoxazole ,010402 general chemistry ,01 natural sciences ,Acetylcholinesterase ,0104 chemical sciences ,chemistry.chemical_compound ,Piperazine ,chemistry ,Materials Chemistry ,Piperidine ,Acetamide ,Butyrylcholinesterase ,ADME - Abstract
© 2020 Taylor & Francis Group, LLC.In this study, p-tert-butyl at position 2 and acetamide bridged 4-substituted piperazine/piperidine at position 5 bearing benzoxazole derivatives were evaluated for their in vitro inhibitory activity against AChE, BChE and Tyrosinase, which are important targets in reducing the adverse effects of Alzheimer’s disease. The most active 1 g inhibited the BChE at a concentration of 50 µM by 54 ± 0.75%. Molecular docking studies of the compounds against BChE (PDB: 4BDS) were performed with Schrödinger and AutoDock Vina and the results were compared. Schrödinger docking scores were found to be more consistent. Estimated ADME profiles and bioactivity scores of the compounds were calculated and found to be compatible with Lipinski and other limiting rules. Geometric optimization parameters, MEP analysis and HUMO and LUMO quantum parameters of the most active 1 g were calculated by using DFT/B3LYP theory and 6-311 G (d,p) base set and results was viewed.
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- 2020
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4. Experimental and theoretical characterization of the 2-(4-bromobenzyl)-5-ethylsulphonyl-1,3-benzoxazole
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Celal Tuğrul Zeyrek, Kamran Polat, Hüseyin Ünver, Özlem Temiz Arpaci, Nazan Ocak İskeleli, Mustafa Yildiz, and Ondokuz Mayıs Üniversitesi
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Benzoxazoles ,Organic Chemistry ,Nonlinear optical effects ,Benzoxazole ,Analytical Chemistry ,PES scan ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Computational chemistry ,Potential energy surface ,Density functional theory ,Physical chemistry ,Molecule ,Organic light-emitting diode ,Spectroscopy ,Ground state ,Basis set ,Natural bond orbital - Abstract
Unver, Huseyin/0000-0003-3968-4385; Polat, Kamran/0000-0001-7617-2480 WOS: 000347495400004 Synthesis, crystal structure, Fourier transform infrared spectroscopy (FT-IR) and quantum mechanical studies of the 2-(4-bromobenzyl)-5-ethylsulphonyl-1,3-benzoxazole (C16H14NO3SBr) have been reported. The molecular structure obtained from X-ray single-crystal analysis of the investigated compound in the ground state has been compared using Hartree-Fock (HF) and density functional theory (DFT) with the functional B3LYP and B1B95 using the 6-311++G(d,p) basis set. In addition to the optimized geometrical structures, atomic charges, molecular electrostatic potential (MEP), natural bond orbital (NBO), nonlinear optical (NLO) effects and thermodynamic properties of the compound have been investigated by using DFT. The potential energy surface (PES) scans about four important torsion angles are performed by using B3LYP/6-311++G(d,p) level of theoretical approximation for the compound. The experimental (FT-IR) and calculated vibrational frequencies (using DFT) of the title compound have been compared. The total molecular dipole moment (mu), linear polarisability (alpha), and the first-order hyperpolarisability (beta) were predicted by using DFT with different basis sets 6-31G(d), 6-31+G(d,p), 6-31++G(d,p), 6-311+G(d) and 6-311++G(d,p) for investigating the effects of basis sets on the NLO properties. Our computational results yield that beta(tot) for the title compound is greater than those of urea. The standard thermodynamic functions were obtained for the title compound with the temperature ranging from 200 to 450 K. (C) 2014 Elsevier B.V. All rights reserved.
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- 2015
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5. QSARs OF SOME NOVEL BENZOXAZOLE, BENZIMIDAZOLE AND OXAZOLO(4,5-b)PYRIDINE DERIVATIVES AGAINST : BAZI BENZOKSAZOL, BENZİMİDAZOL VE OKSAZOLO(4,5-b)PİRİDİN TÜREVLERİNİN C. albicans'a KARŞI KANTİTATİF Y
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Ismail Yalcin, İlkay Ören, Özlem Temiz Arpaci, and Esin Şener
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Pharmacology ,chemistry.chemical_compound ,Benzimidazole ,Chemistry ,Stereochemistry ,Pyridine ,Pharmaceutical Science ,C. albicans ,Benzoxazole - Published
- 2008
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6. Anticancer effects of a newly-synthesized benzoxazole-derived 5-amino-2- [P-bromophenyl]-benzoxazole in breast cancer cell lines
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Funda Kosova, Ozlem Temiz Arpaci, Ibrahim Tuglu, Ercument Olmez, Feyzan Ozdal Kurt, Gorkem Kismali, Zeki Ari, and Mustafa Arisoy
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benzoxazole derivative ,breast cancer ,apoptosis ,angiogenesis ,Medicine - Abstract
We investigated the anticancer potential of 5-amino-2-[p-bromophenyl]-benzoxazole [BB] which is a new benzoxazole derivative in different breast cancer cell lines. BB was applied to estrogen receptor positive [ER+] MCF-7 and receptor negative [ER-] MDA-MB cell lines and its effects were determined by histopathological examinations, viability test [MTT], immunocytochemistry assays [Tunnel, VEGF and eNOS]. Moreover, its effects on apoptozis-related proteins such as Apaf-1, cytochrome C, caspase-3, bcl-2 and NF-κB were examined by western blot. Histopathological examinations showed that BB killed many cells for both cancer cell line while the cells lost their adhesion in MCF-7 and lost their adhesion and epiteloid morphology in MDA-MB. MTT analyses demonstrated that BB caused a clear dose depended toxic effect for both cell types. BB application resulted in an increase labeled apoptotic cells after Tunnel staining which was more obvious for MDA-MB compared to that of MCF-7. VEGF staining was decreased after BB application in both cell lines. The decrease of VEGF staining was clearer for MDA-MB compared to that of MCF-7. The status of oxidative stress was shown by eNOS immunocytochemistry which was increase after BB application in both cell lines. The levels of Apaf-1 and bcl-2 were found to be similar while caspase 9 and NF-κB levels were decreased compared to the control group after BB application for both cell lines. On the other hand, cytochrome C levels were slightly increased in MCF-7 cells while this increase was found very obvious in MDA-MB cell lines in BB groups. In conclusion, BB which is a new benzoxazole derivative have shown significant anticancer effects by increasing apoptosis and decreasing angiogenesis in MCF-7 or MDA-MB breast cancer cell lines. These effects of BB seem to be more prominent for [ER-] MDA-MB cell lines which mimic more aggressive type of breast cancer. These results suggest that BB may be useful to treat [ER-] breast cancers and may be added to treatment protocols. [Med-Science 2022; 11(2.000): 825-30]
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- 2022
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7. Synthesis and antimicrobial activity of some novel 2-(p-substituted-phenyl)-5-substituted-carbonylaminobenzoxazoles
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İlkay Ören, Nurten Altanlar, and Özlem Temiz Arpaci
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Magnetic Resonance Spectroscopy ,Spectrophotometry, Infrared ,Stereochemistry ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Bacillus subtilis ,Gram-Positive Bacteria ,medicine.disease_cause ,Enterococcus faecalis ,chemistry.chemical_compound ,Anti-Infective Agents ,Candida albicans ,Gram-Negative Bacteria ,Drug Discovery ,medicine ,Antibacterial agent ,Benzoxazoles ,biology ,Hydrocarbons, Halogenated ,Benzoxazole ,biology.organism_classification ,Antimicrobial ,Anti-Bacterial Agents ,chemistry ,Staphylococcus aureus ,Antibacterial activity - Abstract
A series of 2-( p -substituted-phenyl)-5-substitued-carbonylamino benzoxazole derivatives ( 5 – 22 ) was synthesized and their antimicrobial activities determined in comparison to several control drugs. The synthesized compounds were tested in vitro against Staphylococcus aureus , Streptococcus faecalis and Bacillus subtilis as Gram-positive, Pseudomonas aeruginosa and Escherichia coli as Gram-negative bacteria and the yeast Candida albicans . Microbiological results showed that the compounds possessed a diffuse spectrum of antibacterial activity against these microorganisms. Compound 9 which bears a phenylacetamido moiety at position 5 and a 4-fluorophenyl group at the 2-position of benzoxazole ring was the most active derivative against S. aureus , S. faecalis and P. aeruginosa with a MIC value of 12.5 μg/ml. Compound 11 provided higher potency than the other tested compounds against B. subtilis at a MIC value of 12.5 μg/ml. Compounds 5 – 22 showed antifungal activity against C. albicans with MIC values between 50 and 12.5 μg/ml.
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- 2002
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8. Synthesis and microbiological activity of some N-(o-hydroxyphenyl)benzamides and phenylacetamides as the possible metabolites of antimicrobial active benzoxazoles: part II
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İlkay Ören, Nurten Altanlar, Ismail Yalcin, Esin Şener, Özlem Temiz Arpaci, and Kamuran K. Bingöl
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Benzoxazoles ,Magnetic Resonance Spectroscopy ,Bacteria ,Spectrophotometry, Infrared ,biology ,Serial dilution ,Klebsiella pneumoniae ,Stereochemistry ,Fungi ,Pharmaceutical Science ,Microbial Sensitivity Tests ,Benzoxazole ,biology.organism_classification ,Antimicrobial ,Corpus albicans ,Anti-Bacterial Agents ,chemistry.chemical_compound ,Anti-Infective Agents ,chemistry ,Acetamides ,Benzamides ,Drug Discovery ,Benzamide ,Candida albicans ,Antibacterial activity - Abstract
The synthesis of some N -( o -hydroxyphenyl)benzamides and benzacetamides ( 2a – 2p ) in order to determine their in vitro antimicrobial activity against two Gram-positive bacteria, three Gram-negative bacteria and the fungus Candida albicans is described. The new compounds were compared with several control drugs. The derivative 2g , 4-amino- N -( o -hydroxyphenyl)benzamide, was found active at an MIC value of 25 μg/ml against the Gram-negative microorganism Klebsiella pneumoniae . Most of the compounds exhibited antibacterial activity at an MIC value of 25 μg/ml against Pseudomonas aureginosa. For the antifungal activity against C. albicans , compounds 2e , 2h and 2m were found more active than the other derivatives (MIC 12.5 μg/ml). The antimicrobial activity of some of these benzamide and phenylacetamide derivatives ( 2a , 2b , 2f , 2g , 2h and 2k ), possible metabolites of benzoxazoles, was also compared with that of the cyclic analogues 3 – 8 . Compound 2f possesses two dilutions better antifungal activity than its cyclic analogue the benzoxazole derivative 5 against C. albicans, while having one dilution better antibacterial activity against Streptococcus faecalis and K. pneumoniae .
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- 2000
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9. QSARs OF SOME ANTIBACTERIAL ACTIVE BENZOXAZOLES AGAINST B. SUBTILIS : BAZI ANTİBAKTERİYAL ETKİLİ BENZOKSAZOLLERİN B. SUBTİLİS'E KARŞI KANTİTATİF YAPI-ETKİ İLİŞKİLERİ
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Ismail Yalcin, Betül Tekiner, Esin Şener, İlkay Ören, and Özlem Temiz Arpaci
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Pharmacology ,Pharmaceutical Science - Published
- 2000
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10. Synthesis and Antimicrobial Activity of Some Novel 2,6,7-Trisubstituted-2H-3,4-dihydro-1,4-benzoxazin-3-one Derivatives
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Betül Tekiner, Nurten Altanlar, Ismail Yalcin, Esin Aki-Sener, İlkay Ören, and Özlem Temiz Arpaci
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Antifungal ,medicine.drug_class ,Chemistry ,Stereochemistry ,medicine ,General Medicine ,Antimicrobial ,Compound s - Abstract
The synthesis of a new serie s of 2/-1-3 ,4-dihydro- 1 ,4-bcnzoxazin-3-one derivatives 1-8 is accomplished in order to determine their antimicrobial activities and study th eir structure -ac tivit y relati onships (SA R). The sy nthesized compounds have bee n tested in virro against two Gram-positive, three Gram-negative bacteria and the fungu s Candida a/bicans. The in vi rro act ivit y results show that the sy nthesized compounds cxibit MIC va lu es between 50- 12.5 J..lg/mL for th e antimi crob ial activity against the tes ted microorga ni sms. The antibacterial and antifungal act ivities or the co mpounds 1-8 are al so compared to several standard drugs. Virtanen et a/ 1 - 4 have iso lated 2,4-dihydroxy-1 ,4benzoxazin-3-one (DIBOA) as a glycos ide from rye pl ant. Since th en a number of analogous of I ,4benzoxazine have been fo und in nature. Only, limited number of compound s containin g I ,4 -benzoxazin c rin g sys tem have been studi ed for th eir chemotherap euti c actiVIt y. The most interesting observation that ofloxacin molecule posseses th e I ,4benzoxazine rin g system in it s structure 5 · 6 , prompted us to investigate thi s heterocyc li c nuclei to ascertain if it would offer any advantage over the other known clini ca ll y used antimi crobial drugs.
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- 2003
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11. Investigation of the effect on prostate cancer purine base analog of the newly developed compound
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Gokhan Temeltas, Funda Kosova, Ozlem Temiz Arpaci, and Ibrahim Tuglu
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prostate cancer ,nf-kb ,vegf ,mmp ,endostatin and thrompospondin-1 ,Medicine - Abstract
Prostate cancer is an important cause of death in men. This malignant disease is known for excessive proliferation, decreased apoptosis, and uncontrolled proliferation of cells. In the light of this knowledge, our aim was to examine potential compounds for their effects on NF-κB and angiogenesis proteins (VGEF, MMP, ES, TSP-1) in a prostate cancer line. In this study, we planned that the purine base analogue with anti-cancer potential has synthesized new compounds, and those with anti-cancer potential has selected by screening with MTT testing. We analysed VEGF, MMP, Endostatin (ES), Thrombospondin-1 (TSP-1) and NF-κB protein levels in a prostate cancer line by the Elisa method. MMA-MEP caused a significant decrease especially for VEGF-A, NF-kB, Endostatin, Thrombospondin -1 and MMP levels compared to other compounds. This suggests that this heterocyclic compound is more effective compared to others. This compound could be more effective for patients with prostate cancer, depending on time and amount. In line with these results, we want to continue our work by applying this heterocyclic compound in different amounts at different time periods. [Med-Science 2020; 9(4.000): 823-8]
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- 2020
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12. Synthesis and the effect of a novel benzoxazole compound on breast cancer cell line
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Funda Kosova, Ozlem Temiz Arpaci, Ercument Olmez, and Ibrahim Tuglu
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Benzoxazole compounds ,NF-κB ,APAF-1 ,sitokrom C ,caspase-3 ,bcl-2 ,Medicine - Abstract
Breast cancer today is the most frequent cancer among women, and the second most common cause of cancer deaths among women. The aim of this study was to synthesize a new benzoxazole derivative, scan it for anti-cancer potential by MTT test using different breast cancer cell lines, and examine its effects on NF-κB and apopitosis-related proteins (APAF-1, cytochrome C, caspase-3, bcl-2) by the western blot method. newly-synthesized benzoxazole compound was applied to breast cancer cell lines (MDA-MB, MCF-7) and its cytotoxicity was measured quantitatively by MTT test. Later, the level of its effects on NF-κB and apopitosis-related proteins (APAF-1, cytochrome C, caspase-3, bcl-2) were examined by the western blot method. In our study, the structure of the synthesized new 5-[4-chlorobutanamido]-2-(p-methylphenyl)benzoxazole was proved by elemental analysis, 1H NMR and mass spectroscopy analysis methods. When the toxic effects of the application of the compound on the cell lines was examined by MTT, it had a greater toxic effect on MCF-7 when compared with MDA-MB, and IC50 levels were lower. When the protein was examined in immunohistochemistry with regard to VEGF, eNOS and TUNEL, it was observed that it caused a reduction in VEGF and an increase in eNOS and TUNEL. In the assay of the proteins by western blot, when benzoxazole compound was added to the MDA and MCF-7 cell line, there was no difference from the control group in Apaf-1 and BCL-2 levels, but a reduction was observed in caspase and Nfkβ levels compared with the control group. When the compound was added to the MDA-MB cell line, an increase was shown in the Cytochrome C level compared to the control group, but no difference was seen in the MCF-7 cell line. It is felt that this synthesized new benzoxazole compound increases apopitosis by reducing the activation of Nfkβ, and in this way has shown an effect of inhibiting tumor growth in cancer treatment. In addition, it is felt that this can provide hope in cancer treatment by the improved phase studies. [Med-Science 2019; 8(1.000): 186-91]
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- 2019
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13. Antimikrobiyal etkili yeni bir benzoksazol bileşiği : a new benzoxazole compound as antimicrobial agent
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Özlem Temiz Arpaci
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Pharmacology ,chemistry.chemical_compound ,Traditional medicine ,chemistry ,Pharmaceutical Science ,Benzoxazole ,Antimicrobial - Abstract
Bu calismada 2-(p-klorofenoksi)metil-5-(p-klorofenoksi)asetamidobenzoksazol, 2,4-diaminofenol ve p-klorofenoksiasetik asitin trimetilsilil polifosfat esteri (PPSE) katalizorlugunde kondensasyonu ile sentez edildi. Yapisi IR, 1H NMR ve mass analiz yontemleri ile aydinlatildi. Bilesigin antimikrobiyal etkisi bazi Gram-pozitif, Gram-negatif bakteri ve Candida albicans ve onlarin antibiyotiklere direncli suslarina karsi belirlenmistir. Bilesigin Minimum Inhibitor Konsantrasyon (MIK) degerleri bazi antibakteriyal ve antifungal ilaclarla mukayese edilmistir
- Published
- 1968
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