8,111 results on '"A, Nehme"'
Search Results
2. Hierarchical Uncertainty Exploration via Feedforward Posterior Trees
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Nehme, Elias, Mulayoff, Rotem, and Michaeli, Tomer
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Image and Video Processing ,Statistics - Machine Learning - Abstract
When solving ill-posed inverse problems, one often desires to explore the space of potential solutions rather than be presented with a single plausible reconstruction. Valuable insights into these feasible solutions and their associated probabilities are embedded in the posterior distribution. However, when confronted with data of high dimensionality (such as images), visualizing this distribution becomes a formidable challenge, necessitating the application of effective summarization techniques before user examination. In this work, we introduce a new approach for visualizing posteriors across multiple levels of granularity using tree-valued predictions. Our method predicts a tree-valued hierarchical summarization of the posterior distribution for any input measurement, in a single forward pass of a neural network. We showcase the efficacy of our approach across diverse datasets and image restoration challenges, highlighting its prowess in uncertainty quantification and visualization. Our findings reveal that our method performs comparably to a baseline that hierarchically clusters samples from a diffusion-based posterior sampler, yet achieves this with orders of magnitude greater speed., Comment: 32 pages, 21 figures
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- 2024
3. Khovanov algebras of type B and tensor powers of the natural $\mathrm{OSp}$-representation
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Heidersdorf, Thorsten, Nehme, Jonas, and Stroppel, Catharina
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Mathematics - Representation Theory - Abstract
We develop the theory of projective endofunctors for modules of Khovanov algebras $K$ of type B. In particular we compute the composition factors and the graded layers of the image of a simple module under such a projective functor. We then study variants of such functors for a subquotient $e\tilde{K}e$. Via a comparison of two graded lifts of the Brauer algebra we relate the Khovanov algebra to the Brauer algebra and use this to show that projective functors describe translation functors on representations of the orthosymplectic supergroup $\mathrm{OSp}(r|2n)$. As an application we get a description of the Loewy layers of indecomposable summands in tensor powers of the natural representation of $\mathrm{OSp}(r|2n)$., Comment: 55 pages, comments welcome
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- 2024
4. MINDS: The JWST MIRI Mid-INfrared Disk Survey
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Henning, Thomas, Kamp, Inga, Samland, Matthias, Arabhavi, Aditya M., Kanwar, Jayatee, van Dishoeck, Ewine F., Guedel, Manuel, Lagage, Pierre-Olivier, Waelkens, Christoffel, Abergel, Alain, Absil, Olivier, Barrado, David, Boccaletti, Anthony, Bouwman, Jeroen, Garatti, Alessio Caratti o, Geers, Vincent, Glauser, Adrian M., Lahuis, Fred, Nehme, Cyrine, Olofsson, Goeran, Pantin, Eric, Ray, Tom P., Vandenbussche, Bart, Waters, L. B. F. M., Wright, Gillian, Christiaens, Valentin, Franceschi, Riccardo, Gasman, Danny, Guadarrama, Rodrigo, Jang, Hyerin, Morales-Calderon, Maria, Pawellek, Nicole, Perotti, Giulia, Rodgers-Lee, Donna, Schreiber, Juergen, Schwarz, Kamber, Tabone, Benoit, Temmink, Milou, Vlasblom, Marissa, Colina, Luis, Greve, Thomas R., and Oestlin, Goeran
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Astrophysics - Earth and Planetary Astrophysics - Abstract
The study of protoplanetary disks has become increasingly important with the Kepler satellite finding that exoplanets are ubiquitous around stars in our galaxy and the discovery of enormous diversity in planetary system architectures and planet properties. High-resolution near-IR and ALMA images show strong evidence for ongoing planet formation in young disks. The JWST MIRI mid-INfrared Disk Survey (MINDS) aims to (1) investigate the chemical inventory in the terrestrial planet-forming zone across stellar spectral type, (2) follow the gas evolution into the disk dispersal stage, and (3) study the structure of protoplanetary and debris disks in the thermal mid-IR. The MINDS survey will thus build a bridge between the chemical inventory of disks and the properties of exoplanets. The survey comprises 52 targets (Herbig Ae stars, T Tauri stars, very low-mass stars and young debris disks). We primarily obtain MIRI/MRS spectra with high S/N (~100-500) covering the complete wavelength range from 4.9 to 27.9 {\mu}m. For a handful of selected targets we also obtain NIRSpec IFU high resolution spectroscopy (2.87-5.27 {\mu}m). We will search for signposts of planet formation in thermal emission of micron-sized dust - information complementary to near-IR scattered light emission from small dust grains and emission from large dust in the submillimeter wavelength domain. We will also study the spatial structure of disks in three key systems that have shown signposts for planet formation, TW Hya and HD 169142 using the MIRI coronagraph at 15.5 {\mu}m and 10.65 {\mu}m respectively and PDS70 using NIRCam imaging in the 1.87 {\mu}m narrow and the 4.8 {\mu}m medium band filter. ..., Comment: accepted for publication in PASP
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- 2024
5. Cross-Sectional Study of Thiamine Deficiency and Its Associated Risks in Emergency Care
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Miller, Joseph, Grahf, Daniel, Nassereddine, Hashem, Nehme, Jimmy, Rammal, Jo-Ann, Ross, Jacob, Rose, Kaitlin, Hrabec, Daniel, Tirgari, Sam, and Lewandowski, Christopher
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thiamine deficiency ,nutritional deficiency - Abstract
Background: Growing data indicates that thiamine deficiency occurs during acute illness in the absence of alcohol use disorder. Our primary objective was to measure clinical factors associated with thiamine deficiency in patients with sepsis, diabetic ketoacidosis, and oncologic emergencies.Methods: This was an analysis of pooled data from cross-sectional studies that enrolled adult emergency department (ED) patients at a single academic center with suspected sepsis, diabetic ketoacidosis, and oncologic emergencies. We excluded patients who had known alcohol use disorder or who had received ED thiamine treatment prior to enrollment. Investigators collected whole blood thiamine levels in addition to demographics, clinical characteristics, and available biomarkers. We defined thiamine deficiency as a whole blood thiamine level below the normal reference range and modeled the adjusted association between this outcome and age.Results: There were 269 patients, of whom the average age was 57 years; 46% were female, and 80% were Black. Fifty-five (20.5%) patients had thiamine deficiency. In univariate analysis, age >60 years (odds ratio [OR] 2.5, 95% confidence interval [CI], 1.3–4.5), female gender (OR 1.9, 95% CI 1.0–3.4), leukopenia (OR 4.9, 95% CI 2.3–10.3), moderate anemia (OR 2.8, 95% CI 1.5–5.3), and hypoalbuminemia (OR 2.2, 95% CI 1.2–4.1) were associated with thiamine deficiency. In adjusted analysis, thiamine deficiency was significantly higher in females (OR 2.1, 95% CI 1.1–4.1), patients >60 years (OR 2.0, 95% CI 1.0–3.8), and patients with leukopenia (OR 5.1, 95% CI 2.3–11.3).Conclusion: In this analysis, thiamine deficiency was common and was associated with advanced age, female gender, and leukopenia.
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- 2024
6. Uncertainty Visualization via Low-Dimensional Posterior Projections
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Yair, Omer, Nehme, Elias, and Michaeli, Tomer
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Computer Science - Computer Vision and Pattern Recognition - Abstract
In ill-posed inverse problems, it is commonly desirable to obtain insight into the full spectrum of plausible solutions, rather than extracting only a single reconstruction. Information about the plausible solutions and their likelihoods is encoded in the posterior distribution. However, for high-dimensional data, this distribution is challenging to visualize. In this work, we introduce a new approach for estimating and visualizing posteriors by employing energy-based models (EBMs) over low-dimensional subspaces. Specifically, we train a conditional EBM that receives an input measurement and a set of directions that span some low-dimensional subspace of solutions, and outputs the probability density function of the posterior within that space. We demonstrate the effectiveness of our method across a diverse range of datasets and image restoration problems, showcasing its strength in uncertainty quantification and visualization. As we show, our method outperforms a baseline that projects samples from a diffusion-based posterior sampler, while being orders of magnitude faster. Furthermore, it is more accurate than a baseline that assumes a Gaussian posterior.
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- 2023
7. Khovanov algebras for the periplectic Lie superalgebras
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Nehme, Jonas
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Mathematics - Representation Theory ,Mathematics - Quantum Algebra ,17B10 - Abstract
The periplectic Lie superalgebra $\mathfrak{p}(n)$ is one of the most mysterious and least understood simple classical Lie superalgebras with reductive even part. We approach the study of its finite dimensional representation theory in terms of Schur--Weyl duality. We provide an idempotent version of its centralizer, i.e. the super Brauer algebra. We use this to describe explicitly the endomorphism ring of a projective generator for $\mathfrak{p}(n)$ resembling the Khovanov algebra of [BS11a]. We also give a diagrammatic description of the translation functors from [BDE19] in terms of certain bimodules and study their effect on projective, standard, costandard and irreducible modules. These results will be used to classify irreducible summands in $V^{\otimes d}$, compute $\mathrm{Ext}^1$ between irreducible modules and show that $\mathfrak{p}(n)$-mod does not admit a Koszul grading.
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- 2023
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8. Factors affecting fatigue progression in multiple sclerosis patients
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Machtoub, Dima, Fares, Callie, Sinan, Hassan, Al Hariri, Moustafa, Nehme, Rim, Chami, Joelle, Joukhdar, Ronny, Tcheroyan, Raya, Adib, Salim, and Khoury, Samia J.
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- 2024
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9. Robust self-supervised denoising of voltage imaging data using CellMincer
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Wang, Brice, Ma, Tianle, Chen, Theresa, Nguyen, Trinh, Crouse, Ethan, Fleming, Stephen J., Walker, Alison S., Valakh, Vera, Nehme, Ralda, Miller, Evan W., Farhi, Samouil L., and Babadi, Mehrtash
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- 2024
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10. A multi-proxy stalagmite record indicates a shift in forcing of twentieth century drought events in Normandy
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Bejarano-Arias, Ingrid, Nehme, Carole, Breitenbach, Sebastian F. M., Ionita, Monica, Baldini, James, Pons-Branchu, Edwige, Modestou, Sevasti, Umbo, Stuart, and Mouralis, Damase
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- 2024
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11. Systemic cytokines related to memory function 6–9 months and 12–15 months after SARS-CoV-2 infection
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Nuber-Champier, A., Breville, G., Voruz, P., Jacot de Alcântara, I., Cionca, A., Allali, G., Lalive, P. H., Benzakour, L., Lövblad, K.-O., Braillard, O., Nehme, M., Coen, M., Serratrice, J., Reny, J.-L., Pugin, J., Guessous, I., Landis, B. N., Assal, F., and Péron, Julie Anne
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- 2024
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12. Association between hydroxychloroquine intake and damage to the outer nuclear layer in eyes without manifest retinal toxicity
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Salameh, Nagib, Doumit, Carla Abi, Jalkh, Edmond, and Nehme, Joseph
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- 2024
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13. Non-apical mitoses contribute to cell delamination during mouse gastrulation
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Despin-Guitard, Evangéline, Rosa, Viviane S., Plunder, Steffen, Mathiah, Navrita, Van Schoor, Kristof, Nehme, Eliana, Merino-Aceituno, Sara, Egea, Joaquim, Shahbazi, Marta N., Theveneau, Eric, and Migeotte, Isabelle
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- 2024
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14. Depth-enhanced high-throughput microscopy by compact PSF engineering
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Opatovski, Nadav, Nehme, Elias, Zoref, Noam, Barzilai, Ilana, Orange Kedem, Reut, Ferdman, Boris, Keselman, Paul, Alalouf, Onit, and Shechtman, Yoav
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- 2024
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15. Local delivery of accutox® synergises with immune-checkpoint inhibitors at disrupting tumor growth
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Bikorimana, Jean Pierre, El-Hachem, Nehme, Abusarah, Jamilah, Gonçalves, Marina Pereira, Farah, Roudy, Mandl, Gabrielle A., Talbot, Sebastien, Beaudoin, Simon, Stanga, Daniela, Plouffe, Sebastien, and Rafei, Moutih
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- 2024
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16. A case of choroidal neovascularization as a first manifestaion of systemic lupus erythematosus
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Jalkh, Edmond, Abi Doumit, Carla, Schakal, Alexandre, Nehme, Joseph, Sukkarieh, Georges, and Jalkh, Alex
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- 2024
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17. Genotype-phenotype associations in CRB1 bi-allelic patients: a novel mutation, a systematic review and meta-analysis
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Daher, Ahmad, Banjak, Malak, Noureldine, Jinane, Nehme, Joseph, and El Shamieh, Said
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- 2024
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18. High-dimensional phenotyping to define the genetic basis of cellular morphology
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Tegtmeyer, Matthew, Arora, Jatin, Asgari, Samira, Cimini, Beth A., Nadig, Ajay, Peirent, Emily, Liyanage, Dhara, Way, Gregory P., Weisbart, Erin, Nathan, Aparna, Amariuta, Tiffany, Eggan, Kevin, Haghighi, Marzieh, McCarroll, Steven A., O’Connor, Luke, Carpenter, Anne E., Singh, Shantanu, Nehme, Ralda, and Raychaudhuri, Soumya
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- 2024
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19. Covid-19 pandemic-related changes in teleworking, emotional exhaustion, and occupational burnout: a cross-sectional analysis of a cohort study
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Anshu Uppal, Nick Pullen, Hélène Baysson, Stephanie Schrempft, Aminata Rosalie Bouhet, María-Eugenia Zaballa, Julien Lamour, Mayssam Nehme, Idris Guessous, Silvia Stringhini, Elsa Lorthe, and Specchio-COVID19 study group
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Diagnosed burnout ,Organizational change ,Remote work ,Emotional exhaustion ,Work from home ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background The COVID-19 pandemic prompted significant shifts to teleworking, raising questions about potential impacts on employee wellbeing. This study examined the association between self-reported changes to teleworking frequency (relative to before the pandemic) and two indicators of occupational burnout: emotional exhaustion and professionally diagnosed burnout. Methods Data were derived from two samples from a digital cohort study based in Geneva, Switzerland: one population-based, and one from a sample of workers who were likely mobilized in the early stages of the COVID-19 pandemic. Emotional exhaustion was measured using the Maslach Burnout Inventory (EE-MBI), while self-reported diagnosed burnout was assessed by asking participants if they had received a professional diagnosis of occupational burnout within the previous 12 months. Participants were categorized based on self-reported telework frequency changes: “no change,” “increase,” “decrease,” “never telework,” and “not possible to telework.” Adjusted regression models for each of the study samples were used to estimate associations between telework changes and burnout outcomes, accounting for sociodemographic, household, and work-related factors. Results In the population-based sample of salaried employees (n = 1,332), the median EE-MBI score was 14 (interquartile range: 6–24), and 7.3% reported diagnosed burnout. Compared to those reporting no change in telework frequency (19% of the sample), those reporting a decrease (4%) and those reporting that teleworking was not possible (28.7%) had significantly higher emotional exhaustion scores (adjusted beta (aβ) 5.26 [95% confidence interval: 1.47, 9.04] and aβ 3.51 [0.44, 6.59], respectively) and additionally reported higher odds of diagnosed burnout (adjusted odds ratio (aOR) 10.59 [3.24, 34.57] and aOR 3.42 [1.22, 9.65], respectively). “Increased” (28.9%) and “never” (19.4%) telework statuses were not significantly associated with burnout outcomes. These trends were mirrored in the “mobilized-workers” sample, with the exception that those reporting that teleworking was not possible did not report significantly higher odds of diagnosed burnout compared to those reporting no change in telework frequency. Conclusions Decreased teleworking frequency and not having the possibility of telework were associated with higher emotional exhaustion and diagnosed burnout. As organizations reconsider their telework policies in a post-pandemic era, they should consider the impact of such organizational changes on employee wellbeing.
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- 2025
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20. Physicians’ knowledge, attitudes, and beliefs regarding practices of male and female surgical sterilization procedures in Lebanon
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Jad Najdi, Alexandre Armache, Elia Abou Chawareb, Nassib Abou Heidar, Marwan Zein, Anthony Fadel, Jimmy Nehme, and Bassel Bachir
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Surgical sterilization ,Family planning ,Vasectomy ,Tubal ligation ,Contraception ,Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Objective Surgical sterilization, including vasectomy in males and tubal ligation in females, is a highly effective but underutilized contraception method. Adoption rates vary globally mostly due to misconceptions by both the general public and practicing physicians. Our survey aims to explore physicians’ knowledge, attitudes and beliefs about surgical sterilization techniques in Lebanon. Study design A web-based survey was sent to residents and attending physicians of different specialties in Lebanon between April 2022 and April 2023. The survey included 21 multiple-choice questions divided in four parts (demographics, knowledge, attitudes and beliefs) and required around 8 min to complete. Data was analyzed using IBM SPSS Statistics. A descriptive analysis was performed using the chi-square test for categorical variables and ANOVA for continuous variables. Results One hundred eighty-three physicians specialized in Urology, OB/GYN, Family medicine and Internal medicine filled the survey. The majority were resident physicians (79%), male (57%), single (72%) and did not receive training in family planning (73%). Knowledge assessment showed an average score of 5/7. After setting this as a passing score, 60.7% of participants passed the assessment with higher likelihood of passing among attending physicians (84.6%), OB/GYN physicians (94.4%), married participants (80.8%), and physicians who received training in family planning (91.8%). Lower likelihood of passing was among Family Medicine (60%), and Internal Medicine (72.5%) physicians. Recommendations varied among specialties. Most physicians perceived the general public preferring tubal ligation as a sterilization method (98%). Conclusion Lebanese primary care physicians have a lower level of knowledge of surgical sterilization procedures compared to specialists. This, coupled with low levels of family planning training and negative perception of patient beliefs may impact attitudes and recommendations. Ongoing education and family planning training is needed to increase awareness among physicians, especially primary care physicians, to allow them to provide more adequate counseling to patients.
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- 2025
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21. Predictors of Online Research Skills to Reduce Copy-Paste: An Intervention in Middle Schools
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Kain, Hoda and Safa, Nehme
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The complexities of Internet sources have caused more challenges to school students, leading them in many cases to copy-paste ideas into their written assignments. Facing these challenges requires adopting and implementing evidence-based practices. This article builds on a mixed-methods, quasi-experimental study which investigated the effect of Internet Reciprocal Model (IRT) to lessen occurrences of copy-paste trend in the writing pieces of Grade 8 ESL students (n = 172) in three private schools in Saida, Lebanon. Eight teachers were randomly assigned to experimental and control conditions along with their respective classes. The researchers collected pre and post-data on online research and comprehension assessment tool. Supported with current research and informed by the principles of the social-cognitive, socio-cultural, and the new literacies theories, regression analyses revealed a strong positive degree of association at post-test between the intervention and the subscale that measured copy-paste trend, indicating that teaching online research skills through one comprehensive model would decrease the copy-paste behavior. Theoretical and pedagogical implications were discussed. Recommendations for school policies and further research were provided.
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- 2023
22. A Mobile Deep Learning Classification Model for Diabetic Retinopathy
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Daniel Rimaru, Antonio Nehme, Musaed Alhussein, Khaled Mahbub, Khusheed Aurangzeb, and Anas Khan
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diabetic retinopathy ,deep neural networks ,machine learning ,retinal vessel segmentation ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
The pupil, iris, vitreous, and retina are parts of the eye, where any defect due to physical damage or chronic diseases to these parts of the eye can lead to partial vision loss or complete blindness. Changes in retinal structure due to diabetes or high blood pressure lead to diabetic retinopathy (DR). The early diagnosis of DR using computer-aided automated tools is possible due to tremendous advancements in machine and deep learning models in the last decade. Devising and implementing innovative deep learning models for retinal structural analysis is crucial to the early diagnosis of DR and other eye diseases. In this work, we have developed a new approach, which involves the development of a lightweight convolutional neural network (CNN)-based model for segmentation of retinal vessels and a mobile application for DR grading. This paper covers the development process of an Android application that leverages the power of CNN-based deep learning model to detect DR regardless of its stage. To achieve this, two models have been created and compared, the best one having an accuracy of 96.72 %. An Android application has then been developed, that makes calls to this model and then displays the results on screen with a simple-to-understand interface developed using the Kivy framework.
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- 2024
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23. Effects of supplementing rumen-protected arginine on performance of transition cows
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B. Souza Simões, M. Nehme Marinho, R.R. Lobo, T.M. Adeoti, M.C. Perdomo, L. Sekito, F.T. Saputra, U. Arshad, A. Husnain, R. Malhotra, A. Fraz, Y. Sugimoto, C.D. Nelson, and J.E.P. Santos
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amino acids ,dairy cow ,rumen-protected arginine ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: An experiment was conducted to determine the effects of supplementing rumen-protected arginine (RPA) on productive performance in dairy cows. One-hundred and two cows were blocked by parity and then by ECM yield. Within block, cows were randomly assigned to control (CON) that received 200 g/d of a mixture of hydrogenated soybean oil and heat-treated soybean meal to supply 30 g of MP, or 200 g/d of a product containing 30 g of metabolizable arginine (RPA), which increased the dietary arginine from 5.7% to 7.5% of the MP from 250 d of gestation to 21 d postpartum. After 21 d postpartum, cows were fed the same diet and data were collected until 84 d postpartum. Cows fed RPA produced an additional 2.5 kg of colostrum (5.3 vs. 7.8 ± 1.0 kg; LSM ± SEM) and 220 g more IgG (526 vs. 746 ± 93 g) than CON cows. Supplementing RPA increased the yields of milk (32.8 vs. 34.9 ± 1.0 kg/d), ECM (37.8 vs. 40.9 ± 1.2 kg/d), and milk total solids (4.48 vs. 4.86 ± 0.14 kg/d) in the first 21 DIM. The benefits of RPA extended beyond the period of supplementation, with a 6.4% increase in yield of ECM per kilogram of DM consumed in all cows (1.88 vs. 2.00 ± 0.05 kg/kg) and an increase in ECM yield, but only in parous cows (44.2 vs. 48.5 ± 1.5 kg/d). Feeding RPA increased the concentrations of urea N in plasma pre- (12.5 vs. 13.9 ± 0.4 mg/dL) and postpartum (11.6 vs. 13.2 ± 0.4 mg/dL), and in milk during the first 21 d postpartum (11.0 vs. 12.0 ± 0.3 mg/dL). Treatment did not affect the concentrations of AA in plasma prepartum, but feeding RPA tended to increase citrulline (72.5 vs. 77.5 ± 2.7 μM), whereas RPA either tended to decrease isoleucine (129.5 vs. 120.9 ± 5.7 μM) or decreased the concentrations of leucine (181.3 vs. 170.2 ± 6.4 μM) and valine (293.2 vs. 276.7 ± 10.4 μM) postpartum. Feeding RPA increased the relative expression of transcripts involved in AA transport (SLC38A4), urea cycle (ARG1), and gluconeogenesis (PC, PEPCK, and G6PC) in hepatic tissue. Feeding diets to supply additional arginine as RPA during the transition period benefited productive performance in dairy cows that extended beyond the period of supplementation despite minor changes in plasma AA concentrations.
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- 2024
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24. Safe Navigation: Training Autonomous Vehicles using Deep Reinforcement Learning in CARLA
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Nehme, Ghadi and Deo, Tejas Y.
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Computer Science - Artificial Intelligence ,Computer Science - Robotics - Abstract
Autonomous vehicles have the potential to revolutionize transportation, but they must be able to navigate safely in traffic before they can be deployed on public roads. The goal of this project is to train autonomous vehicles to make decisions to navigate in uncertain environments using deep reinforcement learning techniques using the CARLA simulator. The simulator provides a realistic and urban environment for training and testing self-driving models. Deep Q-Networks (DQN) are used to predict driving actions. The study involves the integration of collision sensors, segmentation, and depth camera for better object detection and distance estimation. The model is tested on 4 different trajectories in presence of different types of 4-wheeled vehicles and pedestrians. The segmentation and depth cameras were utilized to ensure accurate localization of objects and distance measurement. Our proposed method successfully navigated the self-driving vehicle to its final destination with a high success rate without colliding with other vehicles, pedestrians, or going on the sidewalk. To ensure the optimal performance of our reinforcement learning (RL) models in navigating complex traffic scenarios, we implemented a pre-processing step to reduce the state space. This involved processing the images and sensor output before feeding them into the model. Despite significantly decreasing the state space, our approach yielded robust models that successfully navigated through traffic with high levels of safety and accuracy.
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- 2023
25. Enhancing Robotic Manipulation: Harnessing the Power of Multi-Task Reinforcement Learning and Single Life Reinforcement Learning in Meta-World
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Nehme, Ghadi, Sabane, Ishan, and Deo, Tejas Y.
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Computer Science - Artificial Intelligence ,Computer Science - Robotics - Abstract
At present, robots typically require extensive training to successfully accomplish a single task. However, to truly enhance their usefulness in real-world scenarios, robots should possess the capability to perform multiple tasks effectively. To address this need, various multi-task reinforcement learning (RL) algorithms have been developed, including multi-task proximal policy optimization (PPO), multi-task trust region policy optimization (TRPO), and multi-task soft-actor critic (SAC). Nevertheless, these algorithms demonstrate optimal performance only when operating within an environment or observation space that exhibits a similar distribution. In reality, such conditions are often not the norm, as robots may encounter scenarios or observations that differ from those on which they were trained. Addressing this challenge, algorithms like Q-Weighted Adversarial Learning (QWALE) attempt to tackle the issue by training the base algorithm (generating prior data) solely for a particular task, rendering it unsuitable for generalization across tasks. So, the aim of this research project is to enable a robotic arm to successfully execute seven distinct tasks within the Meta World environment. To achieve this, a multi-task soft actor-critic (MT-SAC) is employed to train the robotic arm. Subsequently, the trained model will serve as a source of prior data for the single-life RL algorithm. The effectiveness of this MT-QWALE algorithm will be assessed by conducting tests on various target positions (novel positions). In the end, a comparison is provided between the trained MT-SAC and the MT-QWALE algorithm where the MT-QWALE performs better. An ablation study demonstrates that MT-QWALE successfully completes tasks with a slightly larger number of steps even after hiding the final goal position.
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- 2023
26. Uncertainty Quantification via Neural Posterior Principal Components
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Nehme, Elias, Yair, Omer, and Michaeli, Tomer
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Image and Video Processing ,Statistics - Machine Learning - Abstract
Uncertainty quantification is crucial for the deployment of image restoration models in safety-critical domains, like autonomous driving and biological imaging. To date, methods for uncertainty visualization have mainly focused on per-pixel estimates. Yet, a heatmap of per-pixel variances is typically of little practical use, as it does not capture the strong correlations between pixels. A more natural measure of uncertainty corresponds to the variances along the principal components (PCs) of the posterior distribution. Theoretically, the PCs can be computed by applying PCA on samples generated from a conditional generative model for the input image. However, this requires generating a very large number of samples at test time, which is painfully slow with the current state-of-the-art (diffusion) models. In this work, we present a method for predicting the PCs of the posterior distribution for any input image, in a single forward pass of a neural network. Our method can either wrap around a pre-trained model that was trained to minimize the mean square error (MSE), or can be trained from scratch to output both a predicted image and the posterior PCs. We showcase our method on multiple inverse problems in imaging, including denoising, inpainting, super-resolution, and biological image-to-image translation. Our method reliably conveys instance-adaptive uncertainty directions, achieving uncertainty quantification comparable with posterior samplers while being orders of magnitude faster. Code and examples are available at https://eliasnehme.github.io/NPPC/, Comment: NeurIPS 2023 Camera Ready, interactive examples at https://eliasnehme.github.io/NPPC/
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- 2023
27. Prevalence and factors associated with severe fatigue 2 years into the COVID-19 pandemic: a cross-sectional population-based study in Geneva, Switzerland
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Silvia Stringhini, Idris Guessous, C Martinez, A Flahault, S Hurst, N Vuilleumier, L Kaiser, K M Posfay-Barbe, O Zimmermann, S Stringhini, A Uppal, P Schaller, J Berthelot, D Pittet, H Baysson, Hélène Baysson, S Yerly, E Lorthe, Mayssam Nehme, Nick Pullen, María-Eugenia Zaballa, A Bal, Clément Romain Hugo Graindorge, Stephanie Schrempft, I Arm-Vernez, A S Azman, D Bachmann, J-F Balavoine, R P Barbe, A R Bouhet, G Bryand-Rumley, F Chappuis, P Collombet, S Coudurier-Boeuf, D S Courvoisier, C de Mestral, P D’ippolito, R Dubos, R Dumont, N El Merjani, N Francioli, C Graindorge, I Guessous, S Harnal, G Kathari, O Kherad, J Lamour, P Lescuyer, A G L’Huillier, A J Loizeau, S Mechoullam, L Metral-Boffod, M Nehme, N Noël, F Pennacchio, J Perez-Saez, G Poulain, C Pugin, N Pullen, V Richard, D Rochat, S Rouzinov, K Samir, H S Ramirez, E Satin, S Schrempft, C Semaani, S Testini, D Urrutia-Rivas, C Verolet, P Vetter, J Villers, G Violot, A Wisniak, and M-E Zaballa
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Medicine - Abstract
Objectives This study aims (1) to assess the prevalence of severe fatigue among the general population of Geneva, 2 years into the COVID-19 pandemic and (2) to identify pandemic and non-pandemic factors associated with severe fatigue.Design Cross-sectional population-based survey conducted in Spring 2022.Setting General adult population of Geneva, Switzerland.Participants 6870 adult participants, randomly selected from the general population, included in the Specchio-COVID-19 cohort study, were invited to answer an online health survey.Outcome and cofactor measure Prevalence of severe fatigue was measured by the Chalder Fatigue Questionnaire with a cut-off score≥4 out of 11. We assessed prevalence ratios of severe fatigue considering sociodemographic factors, health and behavioural characteristics (body mass index, depression, recent diagnosis of chronic disease or allergy, acute health event, smoking status, physical activity and sleep quality) and recent self-reported COVID-19 infections.Results A total of 4040 individuals participated (participation rate 59%, 58% were women, mean age 53.2 (SD=14.1 years)). Overall prevalence of severe fatigue was 30.7% (95% CI=29.2%–32.1%). After adjusting for age, sex, educational level and pre-existing comorbidities, the following characteristics were associated with severe fatigue: individuals aged 18–24 years (adjusted prevalence ratio (aPR)=1.39 (1.10–1.76)) and 25–34 years (aPR=1.23 (1.05–1.45)), female sex (aPR=1.28 (1.16–1.41)), depression (aPR=2.78 (2.56–3.01)), occurrence of health events unrelated to COVID-19 (aPR=1.51 (1.38–1.65)) and self-reported COVID-19 infection in the past 12 months (aPR=1.41 (1.28–1.56)). After further adjustment for depression, previous associations were maintained except for young age.Conclusions About one-third of the adult general population of Geneva experienced severe fatigue, 2 years into the COVID-19 pandemic. Heightened fatigue among young adults is partly explained by depressive symptoms. Recent COVID-19 infection is substantially associated with severe fatigue, regardless of infection severity or co-occurrence of depressive disorder.Trial registration number CCER project ID 2020-00881.
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- 2025
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28. Cricothyroidotomy in out-of-hospital cardiac arrest: An observational study
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Matthew Humar, Benjamin Meadley, Bart Cresswell, Emily Nehme, Christopher Groombridge, David Anderson, and Ziad Nehme
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Emergency medical services ,Out-of-hospital cardiac arrest ,Cardiopulmonary resuscitation ,Emergency front-of-neck access ,Difficult airway ,Cricothyroidotomy ,Specialties of internal medicine ,RC581-951 - Abstract
Aim: To describe the incidence, characteristics, success rates, and outcomes of out-of-hospital cardiac arrest (OHCA) patients receiving cricothyroidotomy. Methods: Over an 18-year period, we retrospectively analysed patient care records and cardiac arrest registry data for cricothyroidotomy cases. Multivariable logistic regression analysis was used to examine associations between study characteristics and cricothyroidotomy success. Results: We identified 80 cricothyroidotomies, 56 of which occurred in OHCA. The incidence of cricothyroidotomy in OHCA was 1.1 per 1,000 attempted resuscitations and increased over the study period (incidence rate ratio [IRR] = 1.13, 95 % confidence interval [CI]: 1.02–1.25, p = 0.023). The overall success rate was 68.8 % (n = 55/80), with lower success in cardiac arrest (n = 33/56, 58.9 %) than non-cardiac arrest patients (n = 22/24, 91.7 %). In OHCA, success rates were higher for surgical compared to needle techniques (88.2 % vs. 54.6 %, p = 0.003). Cardiac arrest (odds ratio [OR] 0.09, 95 % CI 0.16–0.51) and needle techniques (OR 0.11, 95 % CI 0.02–0.56) were independently associated with lower odds of procedural success, while male sex (OR 10.06, 95 % CI 2.00–50.62) was associated with higher odds. Return of spontaneous circulation occurred in 44.6 % (n = 22/56), with 35.7 % (n = 20/56) surviving to hospital and 7.1 % (n = 4/56) surviving to hospital discharge. Procedural complications included cardiac arrest (n = 6/56, 10.7 %), minor bleeding (n = 5/56, 8.9 %), surgical emphysema (n = 3/56, 5.4 %), and major bleeding (n = 2/56, 3.6 %). Conclusion: We found cricothyroidotomy in OHCA to be associated with low rates of procedural success and high mortality rates. Further studies are required to assess the role and potential benefits of cricothyroidotomy in cardiac arrest.
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- 2024
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29. A 3D Convolutional Neural Network Based on Non-enhanced Brain CT to Identify Patients with Brain Metastases
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Felefly, Tony, Francis, Ziad, Roukoz, Camille, Fares, Georges, Achkar, Samir, Yazbeck, Sandrine, Nasr, Antoine, Kordahi, Manal, Azoury, Fares, Nasr, Dolly Nehme, Nasr, Elie, and Noël, Georges
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- 2024
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30. Associations Between Healthy Behaviors and Persistently Favorable Self-Rated Health in a Longitudinal Population-Based Study in Switzerland
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Nehme, Mayssam, Schrempft, Stephanie, Baysson, Helene, Pullen, Nick, Rouzinov, Serguei, Stringhini, Silvia, and Guessous, Idris
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- 2024
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31. Anticancer effect of ethanolic extract of Rheum ribes L. rhizomes: assessment of dose and time-dependent effects in cell-based models
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Nehme, Zeina, Ghandour, Fatima, Hijazi, Akram, Diab-Assaf, Mona, and Karaky, Racha
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- 2024
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32. Brain Chimeroids reveal individual susceptibility to neurotoxic triggers
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Antón-Bolaños, Noelia, Faravelli, Irene, Faits, Tyler, Andreadis, Sophia, Kastli, Rahel, Trattaro, Sebastiano, Adiconis, Xian, Wei, Anqi, Sampath Kumar, Abhishek, Di Bella, Daniela J., Tegtmeyer, Matthew, Nehme, Ralda, Levin, Joshua Z., Regev, Aviv, and Arlotta, Paola
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- 2024
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33. Converting cell death into senescence by PARP1 inhibition improves recovery from acute oxidative injury
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Nehme, Jamil, Mesilmany, Lina, Varela-Eirin, Marta, Brandenburg, Simone, Altulea, Abdullah, Lin, Yao, Gaya da Costa, Mariana, Seelen, Marc, Hillebrands, Jan-Luuk, van Goor, Harry, Saab, Raya, Akl, Haidar, Prevarskaya, Natacha, Farfariello, Valerio, and Demaria, Marco
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- 2024
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34. The Chemical Inventory of the Inner Regions of Planet-forming Disks -- The JWST/MINDS Program
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Kamp, Inga, Henning, Thomas, Arabhavi, Aditya M., Bettoni, Giulio, Christiaens, Valentin, Gasman, Danny, Grant, Sierra L., Morales-Calderón, Maria, Tabone, Benoît, Abergel, Alain, Absil, Olivier, Argyriou, Ioannis, Barrado, David, Boccaletti, Anthony, Bouwman, Jeroen, Garatti, Alessio Caratti o, van Dishoeck, Ewine F., Geers, Vincent, Glauser, Adrian M., Güdel, Manuel, Guadarrama, Rodrigo, Jang, Hyerin, Kanwar, Jayatee, Lagage, Pierre-Olivier, Lahuis, Fred, Mueller, Michael, Nehmé, Cyrine, Olofsson, Göran, Pantin, Eric, Pawellek, Nicole, Perotti, Giulia, Ray, Tom P., Rodgers-Lee, Donna, Samland, Matthias, Scheithauer, Silvia, Schreiber, Jürgen, Schwarz, Kamber, Temmink, Milou, Vandenbussche, Bart, Vlasblom, Marissa, Waelkens, Christoffel, Waters, L. B. F. M., and Wright, Gillian
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
The understanding of planet formation has changed recently, embracing the new idea of pebble accretion. This means that the influx of pebbles from the outer regions of planet-forming disks to their inner zones could determine the composition of planets and their atmospheres. The solid and molecular components delivered to the planet-forming region can be best characterized by mid-infrared spectroscopy. With Spitzer low-resolution (R=100, 600) spectroscopy, this approach was limited to the detection of abundant molecules such as H2O, C2H2, HCN and CO2. This contribution will present first results of the MINDS (MIRI mid-IR Disk Survey, PI: Th. Henning) project. Due do the sensitivity and spectral resolution (R~1500-3500) provided by JWST we now have a unique tool to obtain the full inventory of chemistry in the inner disks of solar-types stars and brown dwarfs, including also less abundant hydrocarbons and isotopologues. The Integral Field Unit (IFU) capabilities enable at the same time spatial studies of the continuum and line emission in extended sources such as debris disks, the flying saucer and also the search for mid-IR signatures of forming planets in systems such as PDS70. These JWST observations are complementary to ALMA and NOEMA observations of the outer disk chemistry; together these datasets provide an integral view of the processes occurring during the planet formation phase., Comment: 14 pages, 8 figures, authors version of the manuscript submitted 22.1.2023 for the Faraday Discussion "Astrochemistry at high resolution", accepted 21.3.2023
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- 2023
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35. Water in the terrestrial planet-forming zone of the PDS 70 disk
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Perotti, G., Christiaens, V., Henning, Th., Tabone, B., Waters, L. B. F. M., Kamp, I., Olofsson, G., Grant, S. L., Gasman, D., Bouwman, J., Samland, M., Franceschi, R., van Dishoeck, E. F., Schwarz, K., Güdel, M., Lagage, P. -O., Ray, T. P., Vandenbussche, B., Abergel, A., Absil, O., Arabhavi, A. M., Argyriou, I., Barrado, D., Boccaletti, A., Garatti, A. Caratti o, Geers, V., Glauser, A. M., Justannont, K., Lahuis, F., Mueller, M., Nehmé, C., Pantin, E., Scheithauer, S., Waelkens, C., Guadarrama, R., Jang, H., Kanwar, J., Morales-Calderón, M., Pawellek, N., Rodgers-Lee, D., Schreiber, J., Colina, L., Greve, T. R., Östlin, G., and Wright, G.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Terrestrial and sub-Neptune planets are expected to form in the inner ($<10~$AU) regions of protoplanetary disks. Water plays a key role in their formation, although it is yet unclear whether water molecules are formed in-situ or transported from the outer disk. So far Spitzer Space Telescope observations have only provided water luminosity upper limits for dust-depleted inner disks, similar to PDS 70, the first system with direct confirmation of protoplanet presence. Here we report JWST observations of PDS 70, a benchmark target to search for water in a disk hosting a large ($\sim54~$AU) planet-carved gap separating an inner and outer disk. Our findings show water in the inner disk of PDS 70. This implies that potential terrestrial planets forming therein have access to a water reservoir. The column densities of water vapour suggest in-situ formation via a reaction sequence involving O, H$_2$, and/or OH, and survival through water self-shielding. This is also supported by the presence of CO$_2$ emission, another molecule sensitive to UV photodissociation. Dust shielding, and replenishment of both gas and small dust from the outer disk, may also play a role in sustaining the water reservoir. Our observations also reveal a strong variability of the mid-infrared spectral energy distribution, pointing to a change of inner disk geometry., Comment: To appear in Nature on 24 July 2023. 21 pages, 10 figures; includes extended data. Part of the JWST MINDS Guaranteed Time Observations program's science enabling products. Spectra downloadable on Zenodo at https://zenodo.org/record/7991022
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- 2023
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36. MINDS. Abundant water and varying C/O across the disk of Sz 98 as seen by JWST/MIRI
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Gasman, Danny, van Dishoeck, Ewine F., Grant, Sierra L., Temmink, Milou, Tabone, Benoît, Henning, Thomas, Kamp, Inga, Güdel, Manuel, Lagage, Pierre-Olivier, Perotti, Giulia, Christiaens, Valentin, Samland, Matthias, Arabhavi, Aditya M., Argyriou, Ioannis, Abergel, Alain, Absil, Olivier, Barrado, David, Boccaletti, Anthony, Bouwman, Jeroen, Garatti, Alessio Caratti o, Geers, Vincent, Glauser, Adrian M., Guadarrama, Rodrigo, Jang, Hyerin, Kanwar, Jayatee, Lahuis, Fred, Morales-Calderón, Maria, Mueller, Michael, Nehmé, Cyrine, Olofsson, Göran, Pantin, Eric, Pawellek, Nicole, Ray, Tom P., Rodgers-Lee, Donna, Scheithauer, Silvia, Schreiber, Jürgen, Schwarz, Kamber, Vandenbussche, Bart, Vlasblom, Marissa, Waters, L. B. F. M., Wright, Gillian, Colina, Luis, Greve, Thomas R., and Östlin, Göran
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Astrophysics - Earth and Planetary Astrophysics - Abstract
MIRI/MRS on board the JWST allows us to probe the inner regions of protoplanetary disks. Here we examine the disk around the classical T Tauri star Sz 98, which has an unusually large dust disk in the millimetre with a compact core. We focus on the H$_2$O emission through both its ro-vibrational and pure rotational emission. Furthermore, we compare our chemical findings with those obtained for the outer disk from Atacama Large Millimeter/submillimeter Array (ALMA) observations. In order to model the molecular features in the spectrum, the continuum was subtracted and LTE slab models were fitted. The spectrum was divided into different wavelength regions corresponding to H$_2$O lines of different excitation conditions, and the slab model fits were performed individually per region. We confidently detect CO, H$_2$O, OH, CO$_2$, and HCN in the emitting layers. The isotopologue H$^{18}_2$O is not detected. Additionally, no other organics, including C$_2$H$_2$, are detected. This indicates that the C/O ratio could be substantially below unity, in contrast with the outer disk. The H$_2$O emission traces a large radial disk surface region, as evidenced by the gradually changing excitation temperatures and emitting radii. The OH and CO$_2$ emission are relatively weak. It is likely that H$_2$O is not significantly photodissociated; either due to self-shielding against the stellar irradiation, or UV-shielding from small dust particles. The relative emitting strength of the different identified molecular features point towards UV-shielding of H$_2$O in the inner disk of Sz 98, with a thin layer of OH on top. The majority of the organic molecules are either hidden below the dust continuum, or not present. In general, the inferred composition points to a sub-solar C/O ratio (<0.5) in the inner disk, in contrast with the larger than unity C/O ratio in the gas in the outer disk found with ALMA., Comment: Updated to accepted version. Accepted by A&A on September 23 2023. 18 pages, 11 figures
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- 2023
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37. ¿Está la luxación de la hemiartroplastia resuelta?
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Firas Nehme Abouzeid, Alejandro Mardomingo Alonso, Rafael Rubio Quevedo, Segundo José Sánchez Gutiérrez, and Miguel González López
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hemiartroplastia ,luxación ,reducción ,recurrencia ,Orthopedic surgery ,RD701-811 - Abstract
Introducción: La luxación de la hemiartroplastia tras una fractura de cadera es una complicación difícil de tratar debido la comorbilidad asociada en este tipo de pacientes, la pobre calidad del hueso y las partes blandas. Materiales y Métodos: Se evaluaron 28 casos de luxación tras una hemiartroplastia. Se comparó la mortalidad con la de 56 controles, en un seguimiento mínimo de un año. En todos los casos, se intentó una reducción cerrada bajo anestesia general, que fue exitosa en 26 pacientes. Se analizaron los episodios de recurrencia de la luxación, considerando los diferentes factores que pueden influir en ella. Resultados: La tasa de mortalidad global de los 28 pacientes con luxación fue del 42% en los primeros 12 meses frente al 21% en el grupo de control (p
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- 2024
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38. Dietary supplementation of rumen native microbes improves lactation performance and feed efficiency in dairy cows
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M. Nehme Marinho, M.C. Perdomo, B. Souza Simões, A. Husnain, U. Arshad, C.C. Figueiredo, and J.E.P. Santos
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dairy cow ,feed efficiency ,microbial additive ,production ,Dairy processing. Dairy products ,SF250.5-275 ,Dairying ,SF221-250 - Abstract
ABSTRACT: The objectives of this study were to determine the effects of 2 dietary microbial additives on productive performance and feed efficiency when supplemented to diets of Holstein cows. One hundred seventeen Holstein cows were enrolled at 61 d (31–87 d) postpartum in a randomized complete block design experiment. Cows were blocked by parity group, as nulliparous or multiparous cows and, within parity, by pretreatment ECM yield. Within block, cows were randomly assigned to one of 3 treatments administered as top-dress for 140 d. Treatments consisted of either 100 g of corn meal containing no microbial additive (CON; 15 primiparous and 25 multiparous), 100 g of corn meal containing 5 g of a mixture of Clostridium beijerinckii and Pichia kudriavzevii (G1; 4 × 107 cfu of C. beijerinckii and 1 × 109 cfu of P. kudriavzevii; 14 primiparous and 24 multiparous), or 100 g of corn meal containing 5 g of a mixture of C. beijerinckii, P. kudriavzevii, Butyrivibrio fibrisolvens, and Ruminococcus bovis (G2; 4 × 107 cfu of C. beijerinckii, 1 × 109 cfu of P. kudriavzevii, 1 × 108 cfu of B. fibrisolvens, and 1 × 108 cfu of R. bovis; 15 primiparous and 24 multiparous). Intake of DM, milk yield, and BW were measured daily, whereas milk composition was analyzed at each milking 2 d a week, and body condition was scored twice weekly. Milk samples were collected on d 60 and 62 in the experiment and analyzed for individual fatty acids. The data were analyzed with mixed-effects models with orthogonal contrast to determine the effect of microbial additive (MA; CON vs. 1/2 G1 + 1/2 G2) and type of microbial additive (TMA; G1 vs. G2). Results are described in sequence as CON, G1, and G2. Intake of DM (22.2 vs. 22.4 vs. 22.4 kg/d), BW (685 vs. 685 vs. 685 kg) and the daily BW change (0.40 vs. 0.39 vs. 0.39 kg/d) did not differ among treatments; however, feeding MA tended to increase BCS (3.28 vs. 3.33 vs. 3.36). Supplementing MA increased yields of milk (39.9 vs. 41.3 vs. 41.5 kg/d), ECM (37.9 vs. 39.3 vs. 39.9 kg/d), fat (1.31 vs. 1.37 vs. 1.40 kg/d), TS (4.59 vs. 4.75 vs. 4.79 kg/d), and ECM per kg of DMI (1.72 vs. 1.76 vs. 1.80 kg/kg). Furthermore, cows fed MA increased yields of preformed fatty acids in milk fat (>16C; 435 vs. 463 vs. 488 g/d), particularly UFA (367 vs. 387 vs. 410 g/d), such as linoleic (C18:2 cis-9,cis-12; 30.9 vs. 33.5 vs. 35.4 g/d) and α-linolenic acids (C18:3 cis-9,cis-12,cis-15; 2.46 vs. 2.68 vs. 2.82 g/d) on d 60 and 62 in the experiment. Collectively, supplementing G1 and G2 improved productive performance of cows with no differences between the 2 MA.
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- 2024
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39. Design Principles for Dual Mode Readiness in an Uncertain Future
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Pamela Roberts, Shirley V. Scott, Jacquelyn Cranney, Therese M. Cumming, Elizabeth Angstmann, Marina Nehme, and Karin Watson
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This paper proposes four principles for managers and higher education educators who are designing units and programmes so as to be dual mode ready. `Dual mode' design and delivery enables students to equitably complete their studies fully online, while also offering on-campus experiences where possible. The four principles are: (1) All learning outcomes can be met irrespective of participation mode; (2) Teaching-learning activities are equitable across participation modes; (3) All students have equivalent opportunity to demonstrate achievement of learning outcomes; and (4) 'Online ready' design. Being dual mode ready will likely remain important as on-campus delivery may not be possible for all students. Further, universities may need to pivot rapidly to fully online delivery for a range of reasons, including pandemic-related circumstances. The four principles provide guidance on how best to ensure equity and fairness for students and teachers in a dual mode context.
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- 2024
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40. Changes in out-of-hospital cardiac arrest resuscitation quality during and after the COVID-19 pandemic
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Kennedy, Charlotte, Nehme, Emily, Anderson, David, Dantanarayana, Ashanti, Delardes, Belinda, and Nehme, Ziad
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- 2024
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41. The Weyl groupoids of $\mathfrak{sl}(m|n)$ and $\mathfrak{osp}(r|2n)$
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Bonfert, Lukas and Nehme, Jonas
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Mathematics - Representation Theory ,Mathematics - Rings and Algebras - Abstract
We provide a convenient formulation of the definition of Cartan graphs and Weyl groupoids introduced by Heckenberger and Schneider, and construct Cartan graphs for regular symmetrizable contragredient Lie superalgebras. For $\mathfrak{sl}(m|n)$, $\mathfrak{osp}(2m+1|2n)$ and $\mathfrak{osp}(2m|2n)$ we explicitly describe the Cartan graph in terms of partitions and determine the relations between the generators of their Weyl groupoids.
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- 2023
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42. A rich hydrocarbon chemistry and high C to O ratio in the inner disk around a very low-mass star
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Tabone, B., Bettoni, G., van Dishoeck, E. F., Arabhavi, A. M., Grant, S. L., Gasman, D., Henning, T., Kamp, I., Güdel, M., Lagage, P. -O., Ray, T. P., Vandenbussche, B., Abergel, A., Absil, O., Argyriou, I., Barrado, D., Boccaletti, A., Bouwman, J., Garatti, A. Caratti o, Geers, V., Glauser, A. M., Justannont, K., Lahuis, F., Mueller, M., Nehmé, C., Olofsson, G., Pantin, E., Scheithauer, S., Waelkens, C., Waters, L. B. F. M., Black, J. H., Christiaens, V., Guadarrama, R., Morales-Calderón, M., Jang, H., Kanwar, J., Pawellek, N., Perotti, G., Perrin, A., Rodgers-Lee, D., Samland, M., Schreiber, J., Schwarz, K. R., Colina, L., Östlin, G., and Wright, G.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Solar and Stellar Astrophysics - Abstract
Carbon is an essential element for life but how much can be delivered to young planets is still an open question. The chemical characterization of planet-forming disks is a crucial step in our understanding of the diversity and habitability of exoplanets. Very low-mass stars ($<0.2~M_{\odot}$) are interesting targets because they host a rich population of terrestrial planets. Here we present the JWST detection of abundant hydrocarbons in the disk of a very low-mass star obtained as part of the MIRI mid-INfrared Disk Survey (MINDS). In addition to very strong and broad emission from C$_2$H$_2$ and its $^{13}$C$^{12}$CH$_2$ isotopologue, C$_4$H$_2$, benzene, and possibly CH$_4$ are identified, but water, PAH and silicate features are weak or absent. The lack of small silicate grains implies that we can look deep down into this disk. These detections testify to an active warm hydrocarbon chemistry with a high C/O ratio in the inner 0.1 au of this disk, perhaps due to destruction of carbonaceous grains. The exceptionally high C$_2$H$_2$/CO$_2$ and C$_2$H$_2$/H$_2$O column density ratios suggest that oxygen is locked up in icy pebbles and planetesimals outside the water iceline. This, in turn, will have significant consequences for the composition of forming exoplanets., Comment: version submitted to Nature Astronomy
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- 2023
43. Roadmap on Deep Learning for Microscopy
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Volpe, Giovanni, Wählby, Carolina, Tian, Lei, Hecht, Michael, Yakimovich, Artur, Monakhova, Kristina, Waller, Laura, Sbalzarini, Ivo F., Metzler, Christopher A., Xie, Mingyang, Zhang, Kevin, Lenton, Isaac C. D., Rubinsztein-Dunlop, Halina, Brunner, Daniel, Bai, Bijie, Ozcan, Aydogan, Midtvedt, Daniel, Wang, Hao, Sladoje, Nataša, Lindblad, Joakim, Smith, Jason T., Ochoa, Marien, Barroso, Margarida, Intes, Xavier, Qiu, Tong, Yu, Li-Yu, You, Sixian, Liu, Yongtao, Ziatdinov, Maxim A., Kalinin, Sergei V., Sheridan, Arlo, Manor, Uri, Nehme, Elias, Goldenberg, Ofri, Shechtman, Yoav, Moberg, Henrik K., Langhammer, Christoph, Špačková, Barbora, Helgadottir, Saga, Midtvedt, Benjamin, Argun, Aykut, Thalheim, Tobias, Cichos, Frank, Bo, Stefano, Hubatsch, Lars, Pineda, Jesus, Manzo, Carlo, Bachimanchi, Harshith, Selander, Erik, Homs-Corbera, Antoni, Fränzl, Martin, de Haan, Kevin, Rivenson, Yair, Korczak, Zofia, Adiels, Caroline Beck, Mijalkov, Mite, Veréb, Dániel, Chang, Yu-Wei, Pereira, Joana B., Matuszewski, Damian, Kylberg, Gustaf, Sintorn, Ida-Maria, Caicedo, Juan C., Cimini, Beth A, Bell, Muyinatu A. Lediju, Saraiva, Bruno M., Jacquemet, Guillaume, Henriques, Ricardo, Ouyang, Wei, Le, Trang, Gómez-de-Mariscal, Estibaliz, Sage, Daniel, Muñoz-Barrutia, Arrate, Lindqvist, Ebba Josefson, and Bergman, Johanna
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Physics - Optics ,Electrical Engineering and Systems Science - Image and Video Processing ,Physics - Applied Physics ,Physics - Biological Physics - Abstract
Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasing resolution and throughput. Artificial intelligence, deep neural networks, and machine learning are all niche terms describing computational methods that have gained a pivotal role in microscopy-based research over the past decade. This Roadmap is written collectively by prominent researchers and encompasses selected aspects of how machine learning is applied to microscopy image data, with the aim of gaining scientific knowledge by improved image quality, automated detection, segmentation, classification and tracking of objects, and efficient merging of information from multiple imaging modalities. We aim to give the reader an overview of the key developments and an understanding of possibilities and limitations of machine learning for microscopy. It will be of interest to a wide cross-disciplinary audience in the physical sciences and life sciences.
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- 2023
44. Development and characterization of a chicory extract fermented by Akkermansia muciniphila: An in vitro study on its potential to modulate obesity-related inflammation
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A. Chervet, R. Nehme, C. Defois-Fraysse, C. Decombat, C. Blavignac, C. Auxenfans, B. Evrard, S. Michel, E. Filaire, J.-Y. Berthon, A. Dreux-Zigha, L. Delort, and F. Caldefie-Chézet
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Akkermansia muciniphila ,Fermentation ,Prebiotics ,Postbiotics ,Obesity ,Inflammation ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Obesity, the fifth leading cause of death globally and linked to chronic low-grade inflammation and development of numerous severe pathologies, is a major public health problem. Fermented foods, probiotics, and postbiotics emerge as promising avenues for combating obesity and inflammation. The aim of our study was to develop and characterize phyto-postbiotics corresponding to prebiotic compounds fermented by gut bacteria, which could act on obesity and related-inflammation. Chicory extract fermented by Akkermansia muciniphila (C-Akm) was selected as the most antioxidant of 20 fermented extracts. The identification of metabolites derived from C-Akm extract has enabled us to detect mostly amino acids, acids, and some polyphenols (daidzein and genistein). The anti-inflammatory and anti-obesity activities of C-Akm extract were studied by testing the extract (50 μg/mL) on the polarization of THP-1 into macrophages, the secretion of pro-inflammatory cytokines in LPS-stimulated PBMCs, and the secretion of leptin and adiponectin in adipospheroids derived from human adipose stem cells. Finally, the extract was examined in 3D co-culture model mimicking inflamed obese adipose tissue. We found that C-Akm extract decreased ROS generation, TNF-α and Il-6 gene expression in polarized macrophages, INFγ and IL-17A secretion in LPS-stimulated PBMCs stimulated with LPS. It also decreased leptin expression while increasing adiponectin and HSL expression levels in both adipocytes and co-cultures. In addition, C-Akm extract stimulated adiponectin secretion in the co-culture model. Finally, our in vitro investigations demonstrated the potential benefits of C-Akm extract in the prevention and treatment of obesity-related inflammation.
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- 2025
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45. Pre- and post-pandemic comparisons in cardiovascular markers: a population-based study
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Mayssam Nehme, Maria Eugenia Zaballa, Serguei Rouzinov, Julien Lamour, Silvia Stringhini, and Idris Guessous
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hypertension ,cardiovacsular disease(s) ,diabetes mellitus ,epidemiology ,population-based ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
IntroductionThe COVID-19 pandemic, starting in 2020, raised concerns about potential long-term health impacts, including its effects on cardiovascular health and related biomarkers. This study part of the Bus Santé in Geneva, Switzerland, compared cardiovascular and metabolic profiles pre- (2016–2019) and post-pandemic (2023–2024) among individuals aged 30–75.MethodsParticipants completed questionnaires and underwent a clinical visit, including a physical examination and fasting blood test to assess lipid and glycemic profiles. Linear regression was used to estimate results including mean systolic and diastolic blood pressure, cholesterol, and glycemic profiles, after adjusting for age, sex, smoking, and socioeconomic status. Quantile regression models were used to estimate median values.ResultsA total of 4,558 participants were included. The study observed modest declines in mean glucose, cholesterol, HDL, and LDL levels post-pandemic, with stable blood pressure. The prevalence and treatment rates of diabetes, hypertension, and dyslipidemia remained consistent. Unawareness of these conditions was stable.ConclusionDespite initial fears of a pandemic-induced health debt, results indicate healthy cardiovascular profiles post-pandemic, likely driven by improved lifestyle behaviors. This study highlights the importance of monitoring of cardiovascular health and suggests that lifestyle improvements may offset potential adverse pandemic effects in developed nations like Switzerland.
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- 2025
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46. Future time perspectives and concerns among adolescents in 2022
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Silvia Stringhini, Idris Guessous, Arnaud G L’Huillier, Cyril Sahyoun, Klara M Posfay-Barbe, Elsa Lorthe, Rémy P Barbe, Hélène Baysson, Jennifer Villers, Mayssam Nehme, Roxane Dumont, Richard Dubos, Patrick Bleich, Prune Collombet, Paola D’Ippolito, Nacira El Merjani, Natalie Francioli, Séverine Harnal, Chantal Martinez, Francesco Pennacchio, Géraldine Poulain, Caroline Pugin, Nick Pullen, Viviane Richard, Guillemette Violot, María-Eugenia Zaballa, Julie Berthelot, Julien Lamour, Jessica Rizzo, Khadija Samir, Claire Semaani, Stéphanie Testini, Antoine Bal, Gaëlle Bryand, Deborah Urrutia Rivas, Andrea Loizeau, Deborah Amrein, Andrew S. Azman, Rémy P. Barbe, Livia Boehm, Aminata R. Bouchet, Viola Bucolli, Vladimir Davidovic, Clément Graindorge, Munire Hagose, Shannon Mechoullam, Klara M. Posfay-Barbe, Deborah Rochat, and Charlotte Verolet
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Pediatrics ,RJ1-570 - Abstract
Future time perspectives (FTP) and future-related concerns in adolescence remain underexplored. We aimed to identify factors associated with limited FTP and describe future-related concerns. Data were drawn from a population-based sample of adolescents aged 14–17 participating in the SEROCoV-KIDS cohort study, in Geneva, Switzerland (October 2022). Of 329 adolescents, 56/329 (17%) reported limited FTP; determinants included prior low mental well-being, limited social support, sexual minority identity, academic difficulties and excessive screen time. Adolescents’ main future-oriented concerns encompassed failure, education and climate change. These results underscore the need to address future perspectives/concerns among young people and implement interventions that strengthen adolescent resilience.
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- 2024
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47. Current Emergency Medical Service Vasoactive Use for the Management of Shock
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Jason E. Bloom, MBBS, Vishal Goel, MBBS, David Anderson, MBChB, Susie Cartledge, BN, PhD, Ziad Nehme, PhD, Jocasta Ball, PhD, Amminadab Eliakundu, PhD, William Chan, MBBS, PhD, Derek P. Chew, MBBS, PhD, David M. Kaye, MBBS, PhD, and Dion Stub, MBBS, PhD
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Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
OBJECTIVES:. We sought to describe the indications for vasoactive medication administration, hemodynamic treatment targets, and specific agents used by various international emergency medical service (EMS) providers. DESIGN AND SETTING:. In March 2022, we sent an online survey comprising of 20 questions to Medical Directors of EMSs across Australia, the Asia Pacific region, and North America. PATIENTS:. A total of 108 EMS directors were emailed an invitation to participate. INTERVENTIONS:. None. MEASUREMENTS AND MAIN RESULTS:. Twenty-five EMS medical directors responded. Local site guidelines for vasoactive agent administration were available to 77.3% of providers. Epinephrine was commonly used as first-line vasoactive agent in 52% of questionnaire respondents, followed by norepinephrine (22%), dopamine (18%), and metaraminol (4%). Epinephrine was the most commonly used vasoactive agent across all forms of shock, with a higher proportion of utilization in cases of cardiogenic shock (58%) and patients suffering shock following cardiac arrest (56%). CONCLUSIONS:. International EMS vasoactive use in the management of shock is heterogeneous. Future randomized controlled trials should aim to elucidate optimal prehospital treatment strategies for shock, including the initiation, choice of agent, and monitoring of vasoactive medication.
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- 2024
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48. CD4+ tumor-infiltrating lymphocytes secreting T cell-engagers induce regression of autologous patient-derived non-small cell lung cancer xenografts
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Anaïs Jiménez-Reinoso, Magdalena Molero-Abraham, Cristina Cirauqui, Belén Blanco, Eva M. Garrido-Martin, Daniel Nehme-Álvarez, Carmen Domínguez-Alonso, Ángel Ramírez-Fernández, Laura Díez-Alonso, Ángel Nuñez-Buiza, África González-Murillo, Raquel Tobes, Eduardo Pareja, Manuel Ramírez-Orellana, José Luis Rodriguez-Peralto, Irene Ferrer, Jon Zugazagoitia, Luis Paz-Ares, and Luis Álvarez-Vallina
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Adoptive cell therapy ,bispecific T cell-engagers ,cytotoxic CD4+ TIL ,solid tumors ,tumor-infiltrating lymphocytes ,Immunologic diseases. Allergy ,RC581-607 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Adoptive transfer of tumor-infiltrating lymphocytes (TIL) has shown remarkable results in melanoma, but only modest clinical benefits in other cancers, even after TIL have been genetically modified to improve their tumor homing, cytotoxic potential or overcome cell exhaustion. The required ex vivo TIL expansion process may induce changes in the T cell clonal composition, which could likely compromise the tumor reactivity of TIL preparations and ultimately the success of TIL therapy. A promising approach based on the production of bispecific T cell-engagers (TCE) by engineered T cells (STAb-T therapy) improves the efficacy of current T cell redirection strategies against tumor-associated antigens in hematological tumors. We studied the TCRβ repertoire in non-small cell lung cancer (NSCLC) tumors and in ex vivo expanded TIL from two unrelated patients. We generated TIL secreting anti-epidermal growth factor receptor (EGFR) × anti-CD3 TCE (TILSTAb) and tested their antitumor efficacy in vitro and in vivo using a NSCLC patient-derived xenograft (PDX) model in which tumor fragments and TIL from the same patient were transplanted into hIL-2 NOG mice. We confirmed that the standard TIL expansion protocol promotes the loss of tumor-dominant T cell clones and the overgrowth of virus-reactive TCR clonotypes that were marginally detectable in primary tumors. We demonstrated the antitumor activity of TILSTAb both in vitro and in vivo when administered intratumorally and systemically in an autologous immune-humanized PDX EGFR+ NSCLC mouse model, where tumor regression was mediated by TCE-redirected CD4+ TIL bearing non-tumor dominant clonotypes.
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- 2024
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49. Bag-valve-mask resuscitators fitted with pressure-limiting valves—Safety feature or potential hazard?
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Matthew Humar, Benjamin Meadley, Christopher Groombridge, Bart Cresswell, David Anderson, and Ziad Nehme
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Self-inflating resuscitators ,Pressure-limiting valve ,Prehospital airway management ,Cardiac arrest resuscitation ,Respiratory failure ,Specialties of internal medicine ,RC581-951 - Published
- 2024
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50. The burden of atrial fibrillation on emergency medical services: A population-based cohort study
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Ball, Jocasta, Mahony, Emily, Nehme, Emily, Voskoboinik, Aleksandr, Hogarty, Joseph, Dawson, Luke P., Horrigan, Mark, Kaye, David M., Stub, Dion, and Nehme, Ziad
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- 2024
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