14,802 results on '"A. Tonkin"'
Search Results
2. Artificial intelligence improves risk prediction in cardiovascular disease
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Teshale, Achamyeleh Birhanu, Htun, Htet Lin, Vered, Mor, Owen, Alice J., Ryan, Joanne, Tonkin, Andrew, and Freak-Poli, Rosanne
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- 2024
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3. Factors influencing haulout behaviour of non-breeding weddell seals (Leptonychotes weddellii) at Cape Royds, Antarctica
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Aspinwall, Arkady, Tonkin, Jonathan D., Pennycook, Jean, Ainley, David, Gerhard, Daniel, and LaRue, Michelle
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- 2024
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4. Biogeochemical and community ecology responses to the wetting of non-perennial streams
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Price, Adam Nicholas, Zimmer, Margaret Ann, Bergstrom, Anna, Burgin, Amy Jo, Seybold, Erin Cedar, Krabbenhoft, Corey Anne, Zipper, Sam, Busch, Michelle Hope, Dodds, Walter Kennedy, Walters, Annika, Rogosch, Jane Sarah, Stubbington, Rachel, Walker, Richard Harry, Stegen, James Christian, Datry, Thibault, Messager, Mathis, Olden, Julian, Godsey, Sarah Elizabeth, Shanafield, Margaret, Lytle, David, Burrows, Ryan, Kaiser, Kendra Elena, Allen, George Henry, Mims, Meryl Christine, Tonkin, Jonathan Douglas, Bogan, Michael, Hammond, John Christopher, Boersma, Kate, Myers-Pigg, Allison Nicole, DelVecchia, Amanda, Allen, Daniel, Yu, Songyan, and Ward, Adam
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- 2024
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5. How, why and when are delayed (back-up) antibiotic prescriptions used in primary care? A realist review integrating concepts of uncertainty in healthcare
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Mcleod, Monsey, Campbell, Anne, Hayhoe, Benedict, Borek, Aleksandra J., Tonkin-Crine, Sarah, Moore, Michael V., Butler, Christopher C., Walker, A. Sarah, Holmes, Alison, and Wong, Geoff
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- 2024
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6. Utilising primary care electronic health records to deliver the ALABAMA randomised controlled trial of penicillin allergy assessment
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Ahmed, Shadia, Fielding, Joanne, Porter, Catherine E., Armitage, Kelsey F., Wanat, Marta, Bates, Chris, Engonidou, Lazarina, West, Robert M., Yu, Ly-Mee, Galal, Ushma, Howard, Philip, Butler, Christopher C., Savic, Sinisa, Boards, Jenny, Tonkin-Crine, Sarah, Parry, John, Pavitt, Sue A., and Sandoe, Jonathan T.
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- 2024
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7. Stigma relating to tuberculosis infection prevention and control implementation in rural health facilities in South Africa — a qualitative study outlining opportunities for mitigation
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van der Westhuizen, Helene-Mari, Ehrlich, Rodney, Somdyala, Ncumisa, Greenhalgh, Trisha, Tonkin-Crine, Sarah, and Butler, Chris C.
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- 2024
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8. Author Correction: Population genomics of virulence genes of Plasmodium falciparum in clinical isolates from Uganda
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Ruybal-Pesántez, Shazia, Tiedje, Kathryn E., Tonkin-Hill, Gerry, Rask, Thomas S., Kamya, Moses R., Greenhouse, Bryan, Dorsey, Grant, Duffy, Michael F., and Day, Karen P.
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- 2024
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9. Species interactions drive continuous assembly of freshwater communities in stochastic environments
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Tabi, Andrea, Siqueira, Tadeu, and Tonkin, Jonathan D.
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- 2024
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10. Short- and long-term impact of aspirin cessation in older adults: a target trial emulation
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Zhou, Zhen, Webb, Katherine L., Nelson, Mark R., Woods, Robyn L., Ernst, Michael E., Murray, Anne M., Chan, Andrew T., Tonkin, Andrew, Reid, Christopher M., Orchard, Suzanne G., Kirpach, Brenda, Shah, Raj C., Stocks, Nigel, Broder, Jonathan C., and Wolfe, Rory
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- 2024
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11. The impact of incident stroke on cognitive trajectories in later life
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Vishwanath, Swarna, Hopper, Ingrid, Cloud, Geoffrey C., Chong, Trevor T-J, Shah, Raj C., Donnan, Geoffrey A., Williamson, Jeff D., Eaton, Charles B., Wolfe, Rory, Reid, Christopher M., Tonkin, Andrew M., Orchard, Suzanne G., Fitzgerald, Sharyn, Murray, Anne M., Woods, Robyn L., Nelson, Mark R., Sood, Ajay, Steves, Claire J., and Ryan, Joanne
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- 2024
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12. Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange
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Xie, Ouli, Zachreson, Cameron, Tonkin-Hill, Gerry, Price, David J., Lacey, Jake A., Morris, Jacqueline M., McDonald, Malcolm I., Bowen, Asha C., Giffard, Philip M., Currie, Bart J., Carapetis, Jonathan R., Holt, Deborah C., Bentley, Stephen D., Davies, Mark R., and Tong, Steven Y. C.
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- 2024
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13. Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis
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Xie, Ouli, Morris, Jacqueline M., Hayes, Andrew J., Towers, Rebecca J., Jespersen, Magnus G., Lees, John A., Ben Zakour, Nouri L., Berking, Olga, Baines, Sarah L., Carter, Glen P., Tonkin-Hill, Gerry, Schrieber, Layla, McIntyre, Liam, Lacey, Jake A., James, Taylah B., Sriprakash, Kadaba S., Beatson, Scott A., Hasegawa, Tadao, Giffard, Phil, Steer, Andrew C., Batzloff, Michael R., Beall, Bernard W., Pinho, Marcos D., Ramirez, Mario, Bessen, Debra E., Dougan, Gordon, Bentley, Stephen D., Walker, Mark J., Currie, Bart J., Tong, Steven Y. C., McMillan, David J., and Davies, Mark R.
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- 2024
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14. A pre-existing Toxoplasma gondii infection exacerbates the pathophysiological response and extent of brain damage after traumatic brain injury in mice
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Baker, Tamara L., Wright, David K., Uboldi, Alessandro D., Tonkin, Christopher J., Vo, Anh, Wilson, Trevor, McDonald, Stuart J., Mychasiuk, Richelle, Semple, Bridgette D., Sun, Mujun, and Shultz, Sandy R.
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- 2024
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15. How, why and when are delayed (back-up) antibiotic prescriptions used in primary care? A realist review integrating concepts of uncertainty in healthcare
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Monsey Mcleod, Anne Campbell, Benedict Hayhoe, Aleksandra J. Borek, Sarah Tonkin-Crine, Michael V. Moore, Christopher C. Butler, A. Sarah Walker, Alison Holmes, Geoff Wong, and on behalf of the STEP-UP study team
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Antibiotics ,Delayed prescriptions ,Back-up prescriptions ,Deferred prescriptions ,Realist review ,Primary care ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Antimicrobial resistance is a global patient safety priority and inappropriate antimicrobial use is a key contributing factor. Evidence have shown that delayed (back-up) antibiotic prescriptions (DP) are an effective and safe strategy for reducing unnecessary antibiotic consumption but its use is controversial. Methods We conducted a realist review to ask why, how, and in what contexts general practitioners (GPs) use DP. We searched five electronic databases for relevant articles and included DP-related data from interviews with healthcare professionals in a related study. Data were analysed using a realist theory-driven approach – theorising which context(s) influenced (mechanisms) resultant outcome(s) (context-mechanism-outcome-configurations: CMOCs). Results Data were included from 76 articles and 41 interviews to develop a program theory comprising nine key and 56 related CMOCs. These explain the reasons for GPs’ tolerance of risk to different uncertainties and how these may interact with GPs’ work environment, self-efficacy and perceived patient concordance to make using DP as a safety-net or social tool more or less likely, at a given time-point. For example, when a GP uses clinical scores or diagnostic tests: a clearly high or low score/test result may mitigate scientific uncertainty and lead to an immediate or no antibiotic decision; an intermediary result may provoke hermeneutic (interpretation-related) uncertainty and lead to DP becoming preferred and used as a safety net. Our program theory explains how DP can be used to mitigate some uncertainties but also provoke or exacerbate others. Conclusion This review explains how, why and in what contexts GPs are more or less likely to use DP, as well as various uncertainties GPs face which DP may mitigate or provoke. We recommend that efforts to plan and implement interventions to optimise antibiotic prescribing in primary care consider these uncertainties and the contexts when DP may be (dis)preferred over other interventions to reduce antibiotic prescribing. We also recommend the following and have included example activities for: (i) reducing demand for immediate antibiotics; (ii) framing DP as an ‘active’ prescribing option; (iii) documenting the decision-making process around DP; and (iv) facilitating social and system support.
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- 2024
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16. Utilising primary care electronic health records to deliver the ALABAMA randomised controlled trial of penicillin allergy assessment
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Shadia Ahmed, Joanne Fielding, Catherine E. Porter, Kelsey F. Armitage, Marta Wanat, Chris Bates, Lazarina Engonidou, Robert M. West, Ly-Mee Yu, Ushma Galal, Philip Howard, Christopher C. Butler, Sinisa Savic, Jenny Boards, Sarah Tonkin-Crine, John Parry, Sue A. Pavitt, Jonathan T. Sandoe, and on behalf of ALABAMA research team
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Penicillin allergy ,Electronic health record ,EHR ,Primary care ,SystmOne ,TPP ,Medicine (General) ,R5-920 - Abstract
Abstract Background Use of electronic health records (EHR) to provide real-world data for research is established, but using EHR to deliver randomised controlled trials (RCTs) more efficiently is less developed. The Allergy AntiBiotics And Microbial resistAnce (ALABAMA) RCT evaluated a penicillin allergy assessment pathway versus usual clinical care in a UK primary care setting. The aim of this paper is to describe how EHRs were used to facilitate efficient delivery of a large-scale randomised trial of a complex intervention embracing efficient participant identification, supporting minimising GP workload, providing accurate post-intervention EHR updates of allergy status, and facilitating participant follow up and outcome data collection. The generalisability of the EHR approach and health economic implications of EHR in clinical trials will be reported in the main ALABAMA trial cost-effectiveness analysis. Methods A descriptive account of the adaptation of functionality within SystmOne used to deliver/facilitate multiple trial processes from participant identification to outcome data collection. Results An ALABAMA organisation group within SystmOne was established which allowed sharing of trial functions/materials developed centrally by the research team. The ‘ALABAMA unit’ within SystmOne was also created and provided a secure efficient environment to access participants’ EHR data. Processes of referring consented participants, allocating them to a trial arm, and assigning specific functions to the intervention arm were developed by adapting tools such as templates, reports, and protocols which were already available in SystmOne as well as pathways to facilitate allergy de-labelling processes and data retrieval for trial outcome analysis. Conclusions ALABAMA is one of the first RCTs to utilise SystmOne EHR functionality and data across the RCT delivery, demonstrating feasibility and applicability to other primary care RCTs. Trial registration ClinicalTrials.gov: NCT04108637, registered 05/03/2019. ISRCTN: ISRCTN20579216.
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- 2024
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17. Stigma relating to tuberculosis infection prevention and control implementation in rural health facilities in South Africa — a qualitative study outlining opportunities for mitigation
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Helene-Mari van der Westhuizen, Rodney Ehrlich, Ncumisa Somdyala, Trisha Greenhalgh, Sarah Tonkin-Crine, and Chris C. Butler
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Tuberculosis ,Stigma ,Infection prevention and control ,Intervention ,Ubuntu ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Tuberculosis (TB) is a stigmatised disease with intersectional associations with poverty, HIV, transmission risk and mortality. The use of visible TB infection prevention and control (IPC) measures, such as masks or isolation, can contribute to stigma. Methods To explore stigma in this condition, we conducted in-depth individual interviews with 18 health workers and 15 patients in the rural Eastern Cape of South Africa using a semi-structured interview guide and narrative approach. We used reflexive thematic analysis guided by line-by-line coding. We then interpreted these key findings using Link and Phelan’s theoretical model of stigma, related this to stigma mitigation recommendations from participants and identified levels of intervention with the Health Stigma and Discrimination Framework. Results Participants shared narratives of how TB IPC measures can contribute to stigma, with some describing feeling ‘less than human’. We found TB IPC measures sometimes exacerbated stigma, for example through introducing physical isolation that became prolonged or through a mask marking the person out as being ill with TB. In this context, stigma emerged from the narrow definition of what mask-wearing symbolises, in contrast with broader uses of masks as a preventative measure. Patient and health workers had contrasting perspectives on the implications of TB IPC-related stigma, with patients focussing on communal benefit, while health workers focussed on the negative impact on the health worker-patient relationship. Participant recommendations to mitigate TB IPC-related stigma included comprehensive information on TB IPC measures, respectful communication between health workers and patients, shifting the focus of TB IPC messages to communal safety (which could draw on ubuntu, a humanist framework) and using universal IPC precautions instead of measures targeted at someone with infectious TB. Conclusions Health facilities may unwittingly perpetuate stigma through TB IPC implementation, but they also have the potential to reduce it. Evoking ‘ubuntu’ as an African humanist conceptual framework could provide a novel perspective to guide future TB IPC stigma mitigation interventions, including policy changes to universal IPC precautions.
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- 2024
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18. Multimodal Indoor Localisation in Parkinson's Disease for Detecting Medication Use: Observational Pilot Study in a Free-Living Setting
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Jovan, Ferdian, Morgan, Catherine, McConville, Ryan, Tonkin, Emma L., Craddock, Ian, and Whone, Alan
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Electrical Engineering and Systems Science - Signal Processing ,Computer Science - Artificial Intelligence ,Computer Science - Machine Learning ,I.2.6 ,I.2.1 ,J.3 - Abstract
Parkinson's disease (PD) is a slowly progressive, debilitating neurodegenerative disease which causes motor symptoms including gait dysfunction. Motor fluctuations are alterations between periods with a positive response to levodopa therapy ("on") and periods marked by re-emergency of PD symptoms ("off") as the response to medication wears off. These fluctuations often affect gait speed and they increase in their disabling impact as PD progresses. To improve the effectiveness of current indoor localisation methods, a transformer-based approach utilising dual modalities which provide complementary views of movement, Received Signal Strength Indicator (RSSI) and accelerometer data from wearable devices, is proposed. A sub-objective aims to evaluate whether indoor localisation, including its in-home gait speed features (i.e. the time taken to walk between rooms), could be used to evaluate motor fluctuations by detecting whether the person with PD is taking levodopa medications or withholding them. To properly evaluate our proposed method, we use a free-living dataset where the movements and mobility are greatly varied and unstructured as expected in real-world conditions. 24 participants lived in pairs (consisting of one person with PD, one control) for five days in a smart home with various sensors. Our evaluation on the resulting dataset demonstrates that our proposed network outperforms other methods for indoor localisation. The sub-objective evaluation shows that precise room-level localisation predictions, transformed into in-home gait speed features, produce accurate predictions on whether the PD participant is taking or withholding their medications., Comment: 11 pages, 4 figures, 4 tables
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- 2023
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19. Lipoprotein(a), platelet function and cardiovascular disease
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Bhatia, Harpreet S., Becker, Richard C., Leibundgut, Gregor, Patel, Mitul, Lacaze, Paul, Tonkin, Andrew, Narula, Jagat, and Tsimikas, Sotirios
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- 2024
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20. Sex-dependent associations of plasma high-density lipoprotein cholesterol and mortality risk in healthy older men and women: two prospective cohort studies
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Hussain, Sultana Monira, Tonkin, Andrew M, Watts, Gerald F, Lacaze, Paul, Yu, Chenglong, Beilin, Lawrence J, Zhou, Zhen, Newman, Anne B, Neumann, Johannes T, Tran, Cammie, and McNeil, John J
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- 2024
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21. Species interactions drive continuous assembly of freshwater communities in stochastic environments
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Andrea Tabi, Tadeu Siqueira, and Jonathan D. Tonkin
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Biodiversity maintenance ,Causal inference ,Body size scaling ,Stochastic modeling ,Community assembly ,Medicine ,Science - Abstract
Abstract Understanding the factors driving the maintenance of long-term biodiversity in changing environments is essential for improving restoration and sustainability strategies in the face of global environmental change. Biodiversity is shaped by both niche and stochastic processes, however the strength of deterministic processes in unpredictable environmental regimes is highly debated. Since communities continuously change over time and space—species persist, disappear or (re)appear—understanding the drivers of species gains and losses from communities should inform us about whether niche or stochastic processes dominate community dynamics. Applying a nonparametric causal discovery approach to a 30-year time series containing annual abundances of benthic invertebrates across 66 locations in New Zealand rivers, we found a strong negative causal relationship between species gains and losses directly driven by predation indicating that niche processes dominate community dynamics. Despite the unpredictable nature of these system, environmental noise was only indirectly related to species gains and losses through altering life history trait distribution. Using a stochastic birth-death framework, we demonstrate that the negative relationship between species gains and losses can not emerge without strong niche processes. Our results showed that even in systems that are dominated by unpredictable environmental variability, species interactions drive continuous community assembly.
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- 2024
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22. Short- and long-term impact of aspirin cessation in older adults: a target trial emulation
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Zhen Zhou, Katherine L. Webb, Mark R. Nelson, Robyn L. Woods, Michael E. Ernst, Anne M. Murray, Andrew T. Chan, Andrew Tonkin, Christopher M. Reid, Suzanne G. Orchard, Brenda Kirpach, Raj C. Shah, Nigel Stocks, Jonathan C. Broder, and Rory Wolfe
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Aspirin ,Target trial ,Cardiovascular disease ,Elderly ,Cessation ,Hemorrhage ,Medicine - Abstract
Abstract Background The net benefit of aspirin cessation in older adults remains uncertain. This study aimed to use observational data to emulate a randomized trial of aspirin cessation versus continuation in older adults without cardiovascular disease (CVD). Methods Post hoc analysis using a target trial emulation framework applied to the immediate post-trial period (2017–2021) of a study of low-dose aspirin initiation in adults aged ≥ 70 years (ASPREE; NCT01038583). Participants from Australia and the USA were included if they were free of CVD at the start of the post-trial intervention period (time zero, T0) and had been taking open-label or randomized aspirin immediately before T0. The two groups in the target trial were as follows: aspirin cessation (participants who were taking randomized aspirin immediately before T0; assumed to have stopped at T0 as instructed) versus aspirin continuation (participants on open-label aspirin at T0 regardless of their randomized treatment; assumed to have continued at T0). The outcomes after T0 were incident CVD, major adverse cardiovascular events (MACE), all-cause mortality, and major bleeding during 3, 6, and 12 months (short-term) and 48 months (long-term) follow-up. Hazard ratios (HRs) comparing aspirin cessation to continuation were estimated from propensity-score (PS) adjusted Cox proportional-hazards regression models. Results We included 6103 CVD-free participants (cessation: 5427, continuation: 676). Over both short- and long-term follow-up, aspirin cessation versus continuation was not associated with elevated risk of CVD, MACE, and all-cause mortality (HRs, at 3 and 48 months respectively, were 1.23 and 0.73 for CVD, 1.11 and 0.84 for MACE, and 0.23 and 0.79 for all-cause mortality, p > 0.05), but cessation had a reduced risk of incident major bleeding events (HRs at 3 and 48 months, 0.16 and 0.63, p
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- 2024
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23. Quantifying the common genetic variability of bacterial traits
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Mai, T. Tien, Tonkin-Hill, Gerry, Lees, John A., and Corander, Jukka
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Quantitative Biology - Genomics - Abstract
The study of common heritability, or co-heritability, among multiple traits has been widely established in quantitative and molecular genetics. However, in bacteria, genome-based estimation of heritability has only been considered very recently and no methods are currently available for considering co-heritability. Here we introduce such a method and demonstrate its usefulness by multi-trait analyses of the three major human pathogens \textit{Escherichia coli}, \textit{Neisseria gonorrhoeae} and \textit{Streprococcus pneumoniae}. We anticipate that the increased availability of high-throughput genomic and phenotypic screens of bacterial populations will spawn ample future opportunities to understand the common molecular basis of different traits in bacteria.
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- 2023
24. When the Ground Truth is not True: Modelling Human Biases in Temporal Annotations
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Yamagata, Taku, Tonkin, Emma L., Sanchez, Benjamin Arana, Craddock, Ian, Nieto, Miquel Perello, Santos-Rodriguez, Raul, Yang, Weisong, and Flach, Peter
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Computer Science - Machine Learning ,Computer Science - Human-Computer Interaction - Abstract
In supervised learning, low quality annotations lead to poorly performing classification and detection models, while also rendering evaluation unreliable. This is particularly apparent on temporal data, where annotation quality is affected by multiple factors. For example, in the post-hoc self-reporting of daily activities, cognitive biases are one of the most common ingredients. In particular, reporting the start and duration of an activity after its finalisation may incorporate biases introduced by personal time perceptions, as well as the imprecision and lack of granularity due to time rounding. Here we propose a method to model human biases on temporal annotations and argue for the use of soft labels. Experimental results in synthetic data show that soft labels provide a better approximation of the ground truth for several metrics. We showcase the method on a real dataset of daily activities.
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- 2023
25. Designer Intent and Postmodern Fashion
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Tonkin, Leanne, primary, Townsend, Katherine, additional, Kaner, Jake, additional, and Downes, David, additional
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- 2024
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26. Evaluating methods for identifying and quantifying Streptococcus pneumoniae co-colonization using next-generation sequencing data
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Jada Hackman, Martin L. Hibberd, Todd D. Swarthout, Jason Hinds, James Ashall, Carmen Sheppard, Gerry Tonkin-Hill, Kate Gould, Comfort Brown, Jacquline Msefula, Andrew A. Mataya, Michiko Toizumi, Lay-Myint Yoshida, Neil French, Robert S. Heyderman, Stefan Flasche, Brenda Kwambana, and Stéphane Hué
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co-carriage ,pneumococcus ,Africa ,Streptococcus pneumoniae ,sequencing ,microarray ,Microbiology ,QR1-502 - Abstract
ABSTRACT Detection of multiple pneumococcal serotype carriage can enhance monitoring of pneumococcal vaccine impact, particularly among high-burden childhood populations. We assessed methods for identifying co-carriage of pneumococcal serotypes from whole-genome sequences. Twenty-four nasopharyngeal samples were collected during community carriage surveillance from healthy children in Blantyre, Malawi, which were then serotyped by microarray. Pneumococcal DNA from culture plate sweeps were sequenced using Illumina MiSeq, and genomic serotyping was carried out using SeroCall and PneumoKITy. Their sensitivity was calculated in reference to the microarray data. Local maxima in the single-nucleotide polymorphism (SNP) density distributions were assessed for their correspondence to the relative abundance of serotypes. Across the 24 individuals, the microarray detected 77 non-unique serotypes, of which 42 occurred at high relative abundance (>10%) (per individual, median, 3; range, 1–6 serotypes). The average sequencing depth was 57X (range: 21X–88X). The sensitivity of SeroCall for identifying high-abundance serotypes was 98% (95% CI, 0.87–1.00), 20% (0.08–0.36) for low abundance (
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- 2024
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27. Airborne infection prevention and control implementation: A positive deviant organisational case study of tuberculosis and COVID-19 at a South African rural district hospital
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Helene-Mari van der Westhuizen, Sarah Tonkin-Crine, Rodney Ehrlich, Chris C. Butler, and Trisha Greenhalgh
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Tuberculosis ,COVID-19 ,infection prevention and control ,case study ,implementation ,SDG 3: Good health and well-being ,Public aspects of medicine ,RA1-1270 - Abstract
There are many examples of poor TB infection prevention and control (IPC) implementation in the academic literature, describing a high-risk environment for nosocomial spread of airborne diseases to patients and health workers. We developed a positive deviant organisational case study drawing on Weick’s theory of organisational sensemaking. We focused on a district hospital in the rural Eastern Cape, South Africa and used four primary care clinics as comparator sites. We interviewed 18 health workers to understand TB IPC implementation over time. We included follow-up interviews on interactions between TB and COVID-19 IPC. We found that TB IPC implementation at the district hospital was strengthened by continually adapting strategies based on synergistic interventions (e.g. TB triage and staff health services), changes in what value health workers attached to TB IPC and establishing organisational TB IPC norms. The COVID-19 pandemic severely tested organisational resilience and COVID-19 IPC measures competed instead of acted synergistically with TB. Yet there is the opportunity for applying COVID-19 IPC organisational narratives to TB IPC to support its use. Based on this positive deviant case we recommend viewing TB IPC implementation as a social process where health workers contribute to how evidence is interpreted and applied.
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- 2024
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28. Consumer-oriented (patient and family) outcomes from nursing in genomics: a scoping review of the literature (2012–2022)
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Jordan N. Keels, Joanne Thomas, Kathleen A. Calzone, Laurie Badzek, Sarah Dewell, Vinaya Murthy, Rosie O’Shea, Emma T. Tonkin, and Andrew A. Dwyer
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cascade screening ,decision making ,family history ,genetic counseling ,genetic testing ,nursing practice ,Genetics ,QH426-470 - Abstract
IntroductionGenomics is a lifespan competency that is important for improving health outcomes for individuals, families, and communities. Nurses play a key role in genomic healthcare and realizing the potential of the genomic era.MethodsWe aimed to chart the current state of genomics in nursing by conducting a systematic scoping review of the literature in four databases (2012–2022). We categorized included articles using the Cochrane Collaboration outcome domains/sub-domains and identify key topical areas.ResultsOf 8532 retrieved articles, we identified 67 articles on ‘consumer-oriented outcomes’ (patient and family) for analysis. Identified articles primarily centered on themes of genetic testing and screening. Most studies reported non-interventional studies 39/67 (58%) and more than half were from the U.S.A. 34/67 (51%). Six of nine subdomains were reported on. The “patient involvement in care” subdomain was the most commonly reported subdomain (17/67, 25%) while “treatment outcomes” had the fewest reports (5/67, 8%). Overall, consumers (i.e., patients and families) had high satisfaction with nurse-led interventions.DiscussionSynthesizing findings revealed key knowledge gaps and unmet patient informational needs around genetic testing and decision support. There are opportunities for interprofessional collaboration between nursing and genetic counseling to meet the mounting demand for genomic healthcare and develop more person-centered approaches to genetic counseling and decisional support. Findings support the need for interventional studies and enhanced focus on implementation for nurses to improve consumer-oriented outcomes.
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- 2024
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29. Baseline Characteristics of Participants in STAREE: A Randomized Trial for Primary Prevention of Cardiovascular Disease Events and Prolongation of Disability‐Free Survival in Older People
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Sophia Zoungas, Chris Moran, Andrea J. Curtis, Simone Spark, Zachary Flanagan, Lawrence Beilin, Trevor T.‐J. Chong, Geoffrey C. Cloud, Ingrid Hopper, Alissia Kost, John J. McNeil, Stephen J. Nicholls, Christopher M. Reid, Joanne Ryan, Andrew M. Tonkin, Stephanie Ward, Anthony S. Wierzbicki, Rory Wolfe, Zhen Zhou, and Mark R. Nelson
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primary prevention ,randomized clinical trial ,statins ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background The risk–benefit balance of statin use in healthy older people is uncertain. We describe the baseline characteristics of the STAREE (Statins in Reducing Events in the Elderly) trial, which is a randomized, double‐blind, placebo‐controlled trial among community‐dwelling older people; the trial evaluated the effect of atorvastatin 40 mg for the prevention of major cardiovascular events (cardiovascular death, nonfatal myocardial infarction or stroke), and on disability‐free survival (survival free of both dementia and persistent physical disability). Methods and Results STAREE enrolled people aged ≥70 years from 1583 general practices across Australia with no history of clinical cardiovascular disease, diabetes, or dementia. Baseline data collected included demographic, clinical, cognitive (Modified Mini‐Mental State Examination), psychological (Center for Epidemiologic Studies Short Depression Scale), lifestyle, medical, physical, blood and urine measures, and quality of life. Demographic and clinical characteristics of study participants were then compared with publicly available landmark statin trials. A total of 9971 participants were recruited (mean±SD age 74.7±4.5 years, 4023 (40%) ≥75 years, 52% women) between July 2015 and March 2023. The mean low‐density lipoprotein cholesterol was 3.27 mmol/L (SD=0.72; 126 mg/dL). Hypertension was reported by 43% of participants and the mean blood pressure was 136/80 mm Hg. Compared with previous landmark statin trials that included primary prevention cohorts, STAREE is unique in including such a large number of older (≥75 years) independent‐living people. Conclusions STAREE is the largest primary prevention trial of statins powered to address the important clinical outcomes of major cardiovascular events, disability‐free survival, and cognition in older people. Registration https://www.clinicaltrials.gov; Unique identifier: NCT02099123.
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- 2024
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30. Plasma Protein Biomarkers and Long‐Term Cardiovascular Mortality Risk in Patients With Chronic Coronary Heart Disease
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Ralph A. H. Stewart, Kristy P. Robledo, Andrew M. Tonkin, Anthony Keech, Leonard Kritharides, Ian Marschner, Edward Janus, Peter L. Thompson, Gerald F. Watts, Tanja Zeller, Harvey D. White, and John Simes
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biomarkers ,cardiovascular risk ,coronary heart disease ,death ,long‐term survival ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Protein biomarkers that reflect different pathophysiological pathways have been associated with the risk of adverse cardiovascular events. However, it is uncertain whether these associations are sustained with increasing years after the biomarkers are measured. Methods and Results In this cohort study, 7745 patients with coronary heart disease who participated in the LIPID (Long‐Term Intervention With Pravastatin in Ischemic Disease) trial, BNP (B‐type natriuretic peptide), troponin I, cystatin‐C, C‐reactive protein, d‐dimer and midregional proadrenomedullin were measured at baseline and after 1 year. Discrimination of plasma biomarker concentrations for cardiovascular death were evaluated in landmark analyses from 1 year for the next 5 years of the randomized trial, and for 10 additional years after trial completion. All 6 biomarkers were associated with risk of cardiovascular death (n=1903) both during and after the clinical trial (each P
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- 2024
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31. Views and Uses of Sepsis Digital Alerts in National Health Service Trusts in England: Qualitative Study With Health Care Professionals
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Runa Lazzarino, Aleksandra J Borek, Kate Honeyford, John Welch, Andrew J Brent, Anne Kinderlerer, Graham Cooke, Shashank Patil, Anthony Gordon, Ben Glampson, Philippa Goodman, Peter Ghazal, Ron Daniels, Céire E Costelloe, and Sarah Tonkin-Crine
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Medical technology ,R855-855.5 - Abstract
BackgroundSepsis is a common cause of serious illness and death. Sepsis management remains challenging and suboptimal. To support rapid sepsis diagnosis and treatment, screening tools have been embedded into hospital digital systems to appear as digital alerts. The implementation of digital alerts to improve the management of sepsis and deterioration is a complex intervention that has to fit with team workflow and the views and practices of hospital staff. Despite the importance of human decision-making and behavior in optimal implementation, there are limited qualitative studies that explore the views and experiences of health care professionals regarding digital alerts as sepsis or deterioration computerized clinician decision support systems (CCDSSs). ObjectiveThis study aims to explore the views and experiences of health care professionals on the use of sepsis or deterioration CCDSSs and to identify barriers and facilitators to their implementation and use in National Health Service (NHS) hospitals. MethodsWe conducted a qualitative, multisite study with unstructured observations and semistructured interviews with health care professionals from emergency departments, outreach teams, and intensive or acute units in 3 NHS hospital trusts in England. Data from both interviews and observations were analyzed together inductively using thematic analysis. ResultsA total of 22 health care professionals were interviewed, and 12 observation sessions were undertaken. A total of four themes regarding digital alerts were identified: (1) support decision-making as nested in electronic health records, but never substitute professionals’ knowledge and experience; (2) remind to take action according to the context, such as the hospital unit and the job role; (3) improve the alerts and their introduction, by making them more accessible, easy to use, not intrusive, more accurate, as well as integrated across the whole health care system; and (4) contextual factors affecting views and use of alerts in the NHS trusts. Digital alerts are more optimally used in general hospital units with a lower senior decision maker:patient ratio and by health care professionals with experience of a similar technology. Better use of the alerts was associated with quality improvement initiatives and continuous sepsis training. The trusts’ features, such as the presence of a 24/7 emergency outreach team, good technological resources, and staffing and teamwork, favored a more optimal use. ConclusionsTrust implementation of sepsis or deterioration CCDSSs requires support on multiple levels and at all phases of the intervention, starting from a prego-live analysis addressing organizational needs and readiness. Advancements toward minimally disruptive and smart digital alerts as sepsis or deterioration CCDSSs, which are more accurate and specific but at the same time scalable and accessible, require policy changes and investments in multidisciplinary research.
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- 2024
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32. Challenges in Data Preservation for AI and ML Systems.
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Emma L. Tonkin and Gregory J. L. Tourte
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- 2024
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33. A Comparative Analysis on Machine Learning Techniques for Research Metadata: the ARDUOUS Case Study.
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Dipendra Yadav, Emma Tonkin, Teodor Stoev, and Kristina Yordanova
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- 2024
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34. Toxoplasma protein export and effector function
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Seizova, Simona, Ferrel, Abel, Boothroyd, John, and Tonkin, Christopher J.
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- 2024
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35. The nature of place : a nature-focused, place-specific, storytelling methodology for architectural innovation
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Tonkin, Mike and Shepherd, Paul
- Abstract
This thesis sets out a nature-focused storytelling methodology to bring about architectural innovation. First published as a short book in 1999, the method called Asking, Looking, Playing, Making uses stories to find archetypes of nature to create unique projects. The approach has evolved empirically over 25 years of Tonkin Liu's practice and teaching and has developed and extended through this research. The outcome is a toolkit that offers an integrated design process for placemaking. The toolkit has brought nature to the fore as a primary concern and an enduring source of inspiration that leads beyond traditional influences to bring new vitality to architecture. The methodology heightens awareness by reprioritising society's relationship to the natural world through setting, framing, symbols and learning from the natural world to bring people closer to nature. These strategies expand the practice of biomimicry. Storytelling is put forward as an autonomous design vehicle that serves as a collective medium of communication for the collaborative team. Storytelling techniques of riddle, quest, archetype, and script provide critical direction to creative design stages. Mythical stories generate distinct design alternatives in the search for the appropriate manifestation of form. Experimentation informs the development of a construction system as a family of parts to become a tailor-made technical incarnation of the story. The design methodology is informed by a diverse field of literary references that contextualise nature and storytelling within the working processes. The approach dismantles the subject matters of our age by exploring poetic and pragmatic design considerations. The toolkit is illustrated in diagrams to offer a systematic architectural approach as art practice is fused into the science of methodology. The procedures within the toolkit are set out in the Asking, Looking, Playing, and Making chapters. Invention within the methodology brings about innovation in the project outcomes as each story challenges conventions. Focusing on the natural world within particular circumstances leads to highly specialised placemaking. In a time of significant environmental challenge, the hope is that this research will provide a responsive, holistic toolkit for architectural innovation.
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- 2023
36. Conserving 'Designer Intent' : a postconservation methodology towards collecting, curating and exhibiting fashion artefacts made with postmodern materials
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Tonkin, Leanne C.
- Abstract
This thesis identifies 'Designer Intent' as a way of evaluating authenticity in the conservation of fashion artefacts incorporating postmodern, transient materials and technologies. The term 'Designer Intent' refers to the experience the designer intends to create for the wearer and the cultural context and paradigm the clothing and/or accessory is designed. Establishing the authenticity of a postmodern fashion artefact, from a curatorial perspective, is to represent the creative output of a designer at a given point in time, as accurately as possible. However, some materials have transient properties, affecting the quality, appearance and tactility of an artefact over short and medium timeframes compared to traditional/natural textile fibres. Artefacts may reach a point where the original aesthetic intention of the designer is no longer represented, sometimes causing 'archival isolation'. This changes the artefact's ontological and material cultural meaning limiting public access and engagement. Conserving 'Designer Intent' supports the idea of a dress object's 'continual identity', a notion that connects different archival stakeholders to sustain the cultural value of postmodern fashion. Analysis of object studies further supports a rethinking of how fashion artefacts are documented in relation to material authenticity and degradation linked to sustainable biomaterials, E-textiles/wearables and digital fashion. The research utilises a multimethod approach, synthesising qualitative findings from interviews, archival research and object studies with theoretical principles of Material Engagement Theory (MET) (Malafouris 2013) the 'in-between' space of the mind and the maker and the postphenomenological emergence and impact of technologies on humans and the environment (Ihde 1995). The proposed 'postconservation' methodology supports a more holistic approach to interpretative, fashion practice, by acknowledging the transient conceptual, material and technological aspects of postmodern fashion artefacts. The research evidences the urgent need to rethink the role of archives and dress conservation, extending it beyond a fixed point in time in support of a more sustainable 'postfashion' system. The insights gained as to the nature and manifestation of 'Designer Intent' have been encapsulated in the form of a toolkit that can be used as part of the conservation process.
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- 2023
37. The impact of incident stroke on cognitive trajectories in later life
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Swarna Vishwanath, Ingrid Hopper, Geoffrey C. Cloud, Trevor T-J Chong, Raj C. Shah, Geoffrey A. Donnan, Jeff D. Williamson, Charles B. Eaton, Rory Wolfe, Christopher M. Reid, Andrew M. Tonkin, Suzanne G. Orchard, Sharyn Fitzgerald, Anne M. Murray, Robyn L. Woods, Mark R. Nelson, Ajay Sood, Claire J. Steves, and Joanne Ryan
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Cognitive function ,Cognitive domains ,Stroke ,Trajectories ,Dementia ,Linear mixed model ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Cognitive impairment is common after stroke, and a large proportion of stroke patients will develop dementia. However, there have been few large prospective studies which have assessed cognition both prior to and after stroke. This study aims to determine the extent to which incident stroke impacts different domains of cognitive function in a longitudinal cohort of older community-dwelling individuals. Methods 19,114 older individuals without cardiovascular disease or major cognitive impairment were recruited and followed over a maximum 11 years. Stroke included ischaemic and haemorrhagic stroke and was adjudicated by experts. Cognitive function was assessed regularly using Modified Mini-Mental State Examination (3MS), Hopkins Verbal Learning Test–Revised (HVLT-R), Symbol Digit Modalities Test (SDMT), and Controlled Oral Word Association Test (COWAT). Linear mixed models were used to investigate the change in cognition at the time of stroke and decline in cognitive trajectories following incident stroke. Results During a median follow-up period of 8.4 [IQR: 7.2, 9.6] years, 815 (4.3%) participants experienced a stroke. Over this time, there was a general decline observed in 3MS, HVLT-R delayed recall, and SDMT scores across participants. However, for individuals who experienced a stroke, there was a significantly greater decline across all cognitive domains immediately after the event immediately after the event (3MS: -1.03 [95%CI: -1.45, -0.60]; HVLT-R: -0.47 [-0.70, -0.24]; SDMT: -2.82 [-3.57, -2.08]; COWAT: -0.67 [-1.04, -0.29]) and a steeper long-term decline for three of these domains (3MS -0.62 [-0.88, -0.35]; COWAT: -0.30 [-0.46, -0.14]); HVLT-R: -0.12 [95%CI, -0.70, -0.24]). However individuals with stroke experienced no longer-term decline in SDMT compared to the rest of the participants. Conclusions These findings highlight the need for comprehensive neuropsychology assessments for ongoing monitoring of cognition following incident stroke; and potential early intervention.
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- 2024
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38. Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange
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Ouli Xie, Cameron Zachreson, Gerry Tonkin-Hill, David J. Price, Jake A. Lacey, Jacqueline M. Morris, Malcolm I. McDonald, Asha C. Bowen, Philip M. Giffard, Bart J. Currie, Jonathan R. Carapetis, Deborah C. Holt, Stephen D. Bentley, Mark R. Davies, and Steven Y. C. Tong
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Science - Abstract
Abstract Streptococcus dysgalactiae subspecies equisimilis (SDSE) and Streptococcus pyogenes share skin and throat niches with extensive genomic homology and horizontal gene transfer (HGT) possibly underlying shared disease phenotypes. It is unknown if cross-species transmission interaction occurs. Here, we conduct a genomic analysis of a longitudinal household survey in remote Australian First Nations communities for patterns of cross-species transmission interaction and HGT. Collected from 4547 person-consultations, we analyse 294 SDSE and 315 S. pyogenes genomes. We find SDSE and S. pyogenes transmission intersects extensively among households and show that patterns of co-occurrence and transmission links are consistent with independent transmission without inter-species interference. We identify at least one of three near-identical cross-species mobile genetic elements (MGEs) carrying antimicrobial resistance or streptodornase virulence genes in 55 (19%) SDSE and 23 (7%) S. pyogenes isolates. These findings demonstrate co-circulation of both pathogens and HGT in communities with a high burden of streptococcal disease, supporting a need to integrate SDSE and S. pyogenes surveillance and control efforts.
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- 2024
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39. Multiscale ecological resilience in braided rivers
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Harris, Holly A.L., primary, Tonkin, Jonathan D., additional, and McIntosh, Angus R., additional
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- 2024
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40. Contributors
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Banerjee, Sumana, primary, Beisel, Jean-Nicolas, additional, Bellido-Leiva, Francisco, additional, Bentley, Dianne, additional, Bisht, Tarun, additional, Bouska, Kristen, additional, Brierley, Gary, additional, Byron, Neil, additional, Caplan, Todd R., additional, Chaffin, Brian C., additional, Chowdhury, A. Ishtiaque A., additional, Conley, Will C., additional, Corenblit, Dov, additional, Cosens, Barbara, additional, Cossart, Robert, additional, Craig, Robin K., additional, Cremin, Emilie, additional, Cunningham, Shaun C., additional, Death, Russell G., additional, DeBoer, Jason A., additional, Delong, Michael D., additional, Doody, Tanya M., additional, Doyle, Martin, additional, Dufour, Simon, additional, Flint, Courtney G., additional, Fraser, Anthony W., additional, Fremier, Alexander K., additional, Fryirs, Kirstie, additional, Fuller, Ian C., additional, Gao, Sicong, additional, Harris, Holly A.L., additional, Heger, Tina, additional, Henderson, Leonard A., additional, Henderson, Andrew C.G., additional, Hensengerth, Oliver, additional, Hensley, Morika Vorenberg, additional, Holley, Cameron, additional, Holway, Joseph, additional, Inaho, Bega, additional, Jeschke, Jonathan M., additional, Jones, C. Nathan, additional, Killgore, K. Jack, additional, Kleiss, Barbara A., additional, Large, Andrew R.G., additional, Larkin, Zacchary, additional, Le, Hue, additional, Liébault, Frédéric, additional, Lininger, Katherine, additional, Lund, Jay, additional, Magilligan, Francis J., additional, Martin, Paul, additional, McCarthy, Terence, additional, McDonald, Jim, additional, McInerney, Paul J., additional, McIntosh, Angus R., additional, McKenna, Chad, additional, McMillan, Alex, additional, Milczarek, Mike, additional, Moggridge, Bradley J., additional, Morrison, Ryan R., additional, Murdoch, Lindsay, additional, Murshed, Sonia B., additional, Nally, Ralph Mac, additional, Nislow, Keith H., additional, O'Connor, Jack, additional, Ochs, Clifford, additional, Palmer, Richard E., additional, Parsons, Melissa, additional, Peek, Ryan, additional, Phillips, Jonathan, additional, Piégay, Hervé, additional, Pile, Jesse, additional, Ralph, Tim, additional, Renaud, Fabrice G., additional, Sabo, John L., additional, Saleeba, Mason, additional, Salgado, Jorge, additional, Scown, Murray W., additional, Srinivasan, Jaishri, additional, Steiger, Johannes, additional, Thompson, Ross M., additional, Thoms, Martin C., additional, Thomson, James R., additional, Tonkin, Jonathan D., additional, Tooth, Stephen, additional, Tri Van, P.D., additional, Tunnicliffe, Jon, additional, Van Looy, Kris, additional, Vu, Anh, additional, Walton, Richard E., additional, Wise, Russell M., additional, Wohl, Ellen, additional, Wolter, Christian, additional, Yarnell, Sarah, additional, and Yarrao, Markson, additional
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- 2024
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41. Investigating Best Practices for Ecological Momentary Assessment: Nationwide Factorial Experiment
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Michael S Businelle, Emily T Hébert, Dingjing Shi, Lizbeth Benson, Krista M Kezbers, Sarah Tonkin, Megan E Piper, and Tianchen Qian
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundEcological momentary assessment (EMA) is a measurement methodology that involves the repeated collection of real-time data on participants’ behavior and experience in their natural environment. While EMA allows researchers to gain valuable insights into dynamic behavioral processes, the need for frequent self-reporting can be burdensome and disruptive. Compliance with EMA protocols is important for accurate, unbiased sampling; yet, there is no “gold standard” for EMA study design to promote compliance. ObjectiveThe purpose of this study was to use a factorial design to identify optimal study design factors, or combinations of factors, for achieving the highest completion rates for smartphone-based EMAs. MethodsParticipants recruited from across the United States were randomized to 1 of 2 levels on each of 5 design factors in a 2×2×2×2×2 design (32 conditions): factor 1—number of questions per EMA survey (15 vs 25); factor 2—number of EMAs per day (2 vs 4); factor 3—EMA prompting schedule (random vs fixed times); factor 4—payment type (US $1 paid per EMA vs payment based on the percentage of EMAs completed); and factor 5—EMA response scale type (ie, slider-type response scale vs Likert-type response scale; this is the only within-person factor; each participant was randomized to complete slider- or Likert-type questions for the first 14 days or second 14 days of the study period). All participants were asked to complete prompted EMAs for 28 days. The effect of each factor on EMA completion was examined, as well as the effects of factor interactions on EMA completion. Finally, relations between demographic and socioenvironmental factors and EMA completion were examined. ResultsParticipants (N=411) were aged 48.4 (SD 12.1) years; 75.7% (311/411) were female, 72.5% (298/411) were White, 18.0% (74/411) were Black or African American, 2.7% (11/411) were Asian, 1.5% (6/411) were American Indian or Alaska Native, 5.4% (22/411) belonged to more than one race, and 9.6% (38/396) were Hispanic/Latino. On average, participants completed 83.8% (28,948/34,552) of scheduled EMAs, and 96.6% (397/411) of participants completed the follow-up survey. Results indicated that there were no significant main effects of the design factors on compliance and no significant interactions. Analyses also indicated that older adults, those without a history of substance use problems, and those without current depression tended to complete more EMAs than their counterparts. No other demographic or socioenvironmental factors were related to EMA completion rates. Finally, the app was well liked (ie, system usability scale score=82.7), and there was a statistically significant positive association between liking the app and EMA compliance. ConclusionsStudy results have broad implications for developing best practices guidelines for future studies that use EMA methodologies. Trial RegistrationClinicalTrials.gov number NCT05194228; https://clinicaltrials.gov/study/NCT05194228
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- 2024
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42. Enhancing multimedia document modeling through extended orbit-based rhetorical structure: an approach to media weighting for importance determination.
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Azze-eddine Maredj, Madjid Sadallah, and Nourredine Tonkin
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- 2024
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43. Multimodal Indoor Localisation for Measuring Mobility in Parkinson's Disease using Transformers
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Jovan, Ferdian, McConville, Ryan, Morgan, Catherine, Tonkin, Emma, Whone, Alan, and Craddock, Ian
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Computer Science - Machine Learning - Abstract
Parkinson's disease (PD) is a slowly progressive debilitating neurodegenerative disease which is prominently characterised by motor symptoms. Indoor localisation, including number and speed of room to room transitions, provides a proxy outcome which represents mobility and could be used as a digital biomarker to quantify how mobility changes as this disease progresses. We use data collected from 10 people with Parkinson's, and 10 controls, each of whom lived for five days in a smart home with various sensors. In order to more effectively localise them indoors, we propose a transformer-based approach utilizing two data modalities, Received Signal Strength Indicator (RSSI) and accelerometer data from wearable devices, which provide complementary views of movement. Our approach makes asymmetric and dynamic correlations by a) learning temporal correlations at different scales and levels, and b) utilizing various gating mechanisms to select relevant features within modality and suppress unnecessary modalities. On a dataset with real patients, we demonstrate that our proposed method gives an average accuracy of 89.9%, outperforming competitors. We also show that our model is able to better predict in-home mobility for people with Parkinson's with an average offset of 1.13 seconds to ground truth., Comment: 17 pages, 1 figure, 3 tables
- Published
- 2022
44. Weird and wonderful: The Warburg Institute's 14.5 million [pounds sterling] makeover
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Tonkin, Boyd
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Books -- Collections and collecting ,Historians -- Collections and collecting ,Art museums -- Remodeling and renovation -- Appreciation ,Libraries -- Appreciation -- Remodeling and renovation ,Literature/writing - Abstract
MEMORY AND MIGRATION The Warburg Institute 1926-2024 Warburg Institute, London, until December 20 On December 12, 1933, the steamers Hermia and Jessica quietly left Hamburg--the German authorities had forbidden any [...]
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- 2024
45. Weight bearing 3-D joint space width distribution at the knee varies according to location and extent of meniscal extrusion: A MOST investigation
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Ghobrial, S.E., Tonkin, C.J., Segal, N.A., Gee, A.H., Treece, G.M., Lynch, J.A., Nevitt, M.C., Poole, K.E.S., Roemer, F.W., Guermazi, A., and Turmezei, T.D.
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- 2024
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46. Seroprevalence and risk factors for Toxoplasma gondii exposure in Australian feral and stray cats using an in-house modified agglutination test
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Liyanage, K.L.D. Tharaka D., Amery-Gale, Jemima, Uboldi, Alessandro D., Adriaanse, Katherine, Firestone, Simon M., Tonkin, Christopher J., Jabbar, Abdul, and Hufschmid, Jasmin
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- 2024
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47. Troubled waters in the land down under: Pervasive threats and high extinction risks demand urgent conservation actions to protect Australia's native freshwater fishes
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Lintermans, Mark, Lutz, Maiko, Whiterod, Nick S., Gruber, Bernd, Hammer, Michael P., Kennard, Mark J., Morgan, David L., Raadik, Tarmo A., Unmack, Peter, Brooks, Steven, Ebner, Brendan C., Gilligan, Dean, Butler, Gavin L., Moore, Glenn, Brown, Culum, Freeman, Rob, Kerezsy, Adam, Bice, Chris M., Le Feuvre, Matthew C., Beatty, Stephen, Arthington, Angela H., Koehn, John, Larson, Helen K., Coleman, Rhys, Mathwin, Rupert, Pearce, Luke, Tonkin, Zeb, Bruce, Andrew, Espinoza, Tom, Kern, Pippa, Lieschke, Jason A., Martin, Keith, Sparks, John, Stoessel, Daniel J., Wedderburn, Scotte D., Allan, Hugh, Clunie, Pam, Cockayne, Bernie, Ellis, Iain, Hardie, Scott, Koster, Wayne, Moy, Karl, Roberts, David, Schmarr, David, Sharley, Joanne, Sternberg, David, Zukowski, Sylvia, Walsh, Chris, Zampatti, Brenton, Shelley, James J., Sayer, Catherine, and Chapple, David G.
- Published
- 2024
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48. Aspirin for Primary Prevention of Cardiovascular Events in Relation to Lipoprotein(a) Genotypes
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Lacaze, Paul, Bakshi, Andrew, Riaz, Moeen, Polekhina, Galina, Owen, Alice, Bhatia, Harpreet S, Natarajan, Pradeep, Wolfe, Rory, Beilin, Lawrence, Nicholls, Stephen J, Watts, Gerald F, McNeil, John J, Tonkin, Andrew M, and Tsimikas, Sotirios
- Subjects
Biomedical and Clinical Sciences ,Cardiovascular Medicine and Haematology ,Clinical Research ,Cardiovascular ,Prevention ,Clinical Trials and Supportive Activities ,Patient Safety ,Evaluation of treatments and therapeutic interventions ,6.1 Pharmaceuticals ,Good Health and Well Being ,Aged ,Aspirin ,Cardiovascular Diseases ,Genotype ,Humans ,Lipoprotein(a) ,Primary Prevention ,aspirin ,cardiovascular disease ,genetics ,lipoprotein(a) ,primary prevention ,Cardiorespiratory Medicine and Haematology ,Public Health and Health Services ,Cardiovascular System & Hematology ,Cardiovascular medicine and haematology - Abstract
BackgroundThe role of aspirin in reducing lipoprotein(a)-mediated atherothrombotic events in primary prevention is not established.ObjectivesThis study sought to assess whether low-dose aspirin benefits individuals with elevated plasma lipoprotein(a)-associated genotypes in the setting of primary prevention.MethodsThe study analyzed 12,815 genotyped individuals ≥70 years of age of European ancestry and without prior cardiovascular disease events enrolled in the ASPREE (ASPirin in Reducing Events in the Elderly) randomized controlled trial of 100 mg/d aspirin. We defined lipoprotein(a)-associated genotypes using rs3798220-C carrier status and quintiles of a lipoprotein(a) genomic risk score (LPA-GRS). We tested for interaction between genotypes and aspirin allocation in Cox proportional hazards models for incidence of major adverse cardiovascular events (MACE) and clinically significant bleeding. We also examined associations in the aspirin and placebo arms of the trial separately.ResultsDuring a median 4.7 years (IQR: 3.6-5.7 years) of follow-up, 435 MACE occurred, with an interaction observed between rs3798220-C and aspirin allocation (P = 0.049). rs3798220-C carrier status was associated with increased MACE risk in the placebo group (HR: 1.90; 95% CI: 1.11-3.24) but not in the aspirin group (HR: 0.54; 95% CI: 0.17-1.70). High LPA-GRS (vs low) was associated with increased MACE risk in the placebo group (HR: 1.70; 95% CI: 1.14-2.55), with risk attenuated in the aspirin group (HR: 1.41; 95% CI: 0.90-2.23), but the interaction was not statistically significant. In all participants, aspirin reduced MACE by 1.7 events per 1,000 person-years and increased clinically significant bleeding by 1.7 events per 1,000 person-years. However, in the rs3798220-C and high LPA-GRS subgroups, aspirin reduced MACE by 11.4 and 3.3 events per 1,000 person-years respectively, without significantly increased bleeding risk.ConclusionsAspirin may benefit older individuals with elevated lipoprotein(a) genotypes in primary prevention.
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- 2022
49. Pan-pathogen deep sequencing of nosocomial bacterial pathogens in Italy in spring 2020: a prospective cohort study
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Thorpe, Harry A, Pesonen, Maiju, Corbella, Marta, Pesonen, Henri, Gaiarsa, Stefano, Boinett, Christine J, Tonkin-Hill, Gerry, Mäklin, Tommi, Pöntinen, Anna K, MacAlasdair, Neil, Gladstone, Rebecca A, Arredondo-Alonso, Sergio, Kallonen, Teemu, Jamrozy, Dorota, Lo, Stephanie W, Chaguza, Chrispin, Blackwell, Grace A, Honkela, Antti, Schürch, Anita C, Willems, Rob J L, Merla, Cristina, Petazzoni, Greta, Feil, Edward J, Cambieri, Patrizia, Thomson, Nicholas R, Bentley, Stephen D, Sassera, Davide, and Corander, Jukka
- Published
- 2024
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50. Application of a geothermal wellbore simulator in evaluating an enhanced geothermal system
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Xie, Jingxuan, Tonkin, Ryan, Yeh, Angus, Wang, Jiansheng, and O'Sullivan, Michael
- Published
- 2025
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