120 results on '"A. Varaklioti"'
Search Results
2. Early caloric deprivation in preterm infants affects Bayley-III scales performance at 18–24 months of corrected age
- Author
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Lithoxopoulou, Maria, Rallis, Dimitrios, Christou, Helen, Goutsiou, Evanthia, Varaklioti, Agoritsa, Karagianni, Paraskevi, Tsakalidis, Christos, Domeyer, Philip, Kuriakeli, Georgia, and Soubasi, Vasiliki
- Published
- 2019
- Full Text
- View/download PDF
3. Occult hepatitis B virus infection in Greek patients with congenital bleeding disorders
- Author
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Varaklioti, Agoritsa, Kouramba, Anna, Ioannidou, Panagiota, and Katsarou, Olga
- Published
- 2017
- Full Text
- View/download PDF
4. HCV Defective Genomes Promote Persistent Infection by Modulating the Viral Life Cycle
- Author
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Eirini Karamichali, Hajar Chihab, Athanassios Kakkanas, Agnes Marchio, Timokratis Karamitros, Vasiliki Pogka, Agoritsa Varaklioti, Antonis Kalliaropoulos, Beatrice Martinez-Gonzales, Pelagia Foka, Ioannis Koskinas, Andreas Mentis, Soumaya Benjelloun, Pascal Pineau, and Urania Georgopoulou
- Subjects
hepatitis C ,defective genomes ,exosomes ,viral replication ,viral persistence ,Microbiology ,QR1-502 - Abstract
Defective interfering (DI) RNAs have been detected in several human viruses. HCV in-frame deletions mutants (IFDMs), missing mainly the envelope proteins, have been found in patient sera and liver tissues. IFDMs replicate independently and can be trans-packaged into infectious virions in the presence of full length viral genome. So far, their biological role is unclear. In this study, we have isolated and cloned IFDMs from sera samples and liver tissues of patients infected with HCV genotypes 1b, 2a, and 3a. IFDMs were present in up to 26% of samples tested. Using the in vitro HCV cell culture system, co-expression of the wild type (wt) HCV replicon with HCV IFDMs RNA resulted in increased HCV replication. Additionally, co-transfection of the HCV full length genome RNA and a defective mutant missing the envelope region led to increased viral release, collectively suggesting an important biological role for IFDMs in the virus life cycle. Recently, exosomes, masters of intercellular communication, have been implicated in the transport of HCV viral genomes. We report for the first time that exosomal RNA isolated from HCV sera samples contains HCV defective genomes. We also demonstrate that inhibition of exosomal biogenesis and release influences HCV viral replication. Overall, we provide evidence that the presence of HCV IFDMs affects both viral replication and release. IFDMs exploit exosomes as means of transport, a way to evade the immune system, to spread more efficiently and possibly maintain persistent infection.
- Published
- 2018
- Full Text
- View/download PDF
5. IMPLICATIONS OF PERINATAL MORBIDITIES AND ASSOCIATION OF NUTRITION IN NEURODEVELOPMENT: O - 0072 | ORAL | NEURODEVELOPMENTAL OUTCOME IN PRETERM INFANTS
- Author
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Lithoxopoulou, M., Varaklioti, A., Domagier, F. R., Drogouti, E., Goutsiou, E., Papacharalampous, E., Babacheva, E., and Soubasi, V.
- Published
- 2017
6. PB2360: QUALITY OF LIFE AND TREATMENT SATISFACTION AMONG PATIENTS UNDER LONG-TERM ANTICOAGULANT THERAPY WITH VITAMIN K ANTAGONISTS
- Author
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Varaklioti, A., primary, Nika, S., additional, Papachronis, A., additional, Chanos, A., additional, Gkotsi, S., additional, Pyrpyri, T., additional, Sergentanis, T., additional, Gavalaki, M., additional, and Katsarou, O., additional
- Published
- 2022
- Full Text
- View/download PDF
7. Green fluorescent protein – Tagged HCV non-enveloped capsid like particles: Development of a new tool for tracking HCV core uptake
- Author
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Katsarou, Konstantina, Serti, Elisavet, Tsitoura, Panagiota, Lavdas, Alexandros A., Varaklioti, Agoritsa, Pickl-Herk, Angela-Maria, Blaas, Dieter, Oz-Arslan, Devrim, Zhu, Rong, Hinterdorfer, Peter, Mavromara, Penelope, and Georgopoulou, Urania
- Published
- 2009
- Full Text
- View/download PDF
8. Quality of Life among Patients with Retinal Vein Occlusion: A Case-Control Study
- Author
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Irini Chatziralli, Alexandros Chatzirallis, Panagiotis Theodossiadis, Theodoros N. Sergentanis, and Agoritsa Varaklioti
- Subjects
Male ,medicine.medical_specialty ,Retinal Vein ,media_common.quotation_subject ,Visual Acuity ,Poor quality ,03 medical and health sciences ,0302 clinical medicine ,Quality of life (healthcare) ,EQ-5D ,Occlusion ,Retinal Vein Occlusion ,Medicine ,Humans ,In patient ,Quality (business) ,media_common ,business.industry ,Case-control study ,General Medicine ,Ophthalmology ,Case-Control Studies ,Emergency medicine ,030221 ophthalmology & optometry ,Quality of Life ,Female ,business ,030217 neurology & neurosurgery ,Tomography, Optical Coherence - Abstract
Purpose: The purpose of this study was to evaluate health-related quality of life in patients with retinal vein occlusion (RVO) and investigate the possible risk factors for poor quality of life in...
- Published
- 2021
9. Quality of Life among Patients with Retinal Vein Occlusion: A Case-Control Study
- Author
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Chatzirallis, Alexandros Varaklioti, Agoritsa Sergentanis, Theodoros N Theodossiadis, Panagiotis Chatziralli, Irini
- Subjects
Health Sciences ,Επιστήμες Υγείας - Abstract
Purpose: The purpose of this study was to evaluate health-related quality of life in patients with retinal vein occlusion (RVO) and investigate the possible risk factors for poor quality of life in patients with RVO. Methods: Participants in the study were 67 patients with RVO, 42 male and 25 female, mean-aged 73.1 +/- 10.9 years, and 70 sex- and age-matched controls. Demographic data, lifestyle factors and medical history were recorded. All patients underwent best-corrected visual acuity measurement, dilated fundoscopy and optical coherence tomography. All participants completed two questionnaires assessing quality of life (EQ-5D, NEI VFQ-25). Risk factors for health-related quality of life in RVO patients were investigated. Results: Patients with RVO exhibited significantly lower composite score for VFQ-25 compared to controls (74.1 +/- 3.8 vs. 91.7 +/- 3.9 for patients and controls, respectively, p < .001). In addition, RVO patients had significantly lower EQ-5D Index score compared to controls (0.88 +/- 0.15 vs. 0.92 +/- 0.12 for patients and controls, respectively, p = .043). Risk factors associated with quality of life in patients with RVO were found the alcohol consumption, the presence of thyroidopathy, coagulation disorders, visual acuity in the eye with RVO, central retinal thickness, the type of edema, the presence of ischemia and the condition of external limiting membrane. In multivariate analysis, only alcohol consumption and visual acuity in the eye with RVO were found to be independent risk factors, affecting quality of life in RVO patients. Conclusions: Patients with RVO presented lower quality of life in comparison with controls. Potential risk factors should be taken into account and their early detection may improve quality of life in such patients and lead to targeted health policies.
- Published
- 2021
10. Quality of Life among Patients with Retinal Vein Occlusion: A Case-Control Study
- Author
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Chatzirallis, Alexandros Varaklioti, Agoritsa Sergentanis, Theodoros N. Theodossiadis, Panagiotis Chatziralli, Irini and Chatzirallis, Alexandros Varaklioti, Agoritsa Sergentanis, Theodoros N. Theodossiadis, Panagiotis Chatziralli, Irini
- Abstract
Purpose: The purpose of this study was to evaluate health-related quality of life in patients with retinal vein occlusion (RVO) and investigate the possible risk factors for poor quality of life in patients with RVO. Methods: Participants in the study were 67 patients with RVO, 42 male and 25 female, mean-aged 73.1 +/- 10.9 years, and 70 sex- and age-matched controls. Demographic data, lifestyle factors and medical history were recorded. All patients underwent best-corrected visual acuity measurement, dilated fundoscopy and optical coherence tomography. All participants completed two questionnaires assessing quality of life (EQ-5D, NEI VFQ-25). Risk factors for health-related quality of life in RVO patients were investigated. Results: Patients with RVO exhibited significantly lower composite score for VFQ-25 compared to controls (74.1 +/- 3.8 vs. 91.7 +/- 3.9 for patients and controls, respectively, p < .001). In addition, RVO patients had significantly lower EQ-5D Index score compared to controls (0.88 +/- 0.15 vs. 0.92 +/- 0.12 for patients and controls, respectively, p = .043). Risk factors associated with quality of life in patients with RVO were found the alcohol consumption, the presence of thyroidopathy, coagulation disorders, visual acuity in the eye with RVO, central retinal thickness, the type of edema, the presence of ischemia and the condition of external limiting membrane. In multivariate analysis, only alcohol consumption and visual acuity in the eye with RVO were found to be independent risk factors, affecting quality of life in RVO patients. Conclusions: Patients with RVO presented lower quality of life in comparison with controls. Potential risk factors should be taken into account and their early detection may improve quality of life in such patients and lead to targeted health policies.
- Published
- 2021
11. Expression of immunoreactive forms of the hepatitis C NS5A protein in E. coli and their use for diagnostic assays
- Author
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Kalamvoki, M., Miriagou, V., Hadziyannis, A., Georgopoulou, U., Varaklioti, A., Hadziyannis, S., and Mavromara, P.
- Published
- 2002
- Full Text
- View/download PDF
12. Prevalence of alexithymia and its association with quality of life and emotional distress, in Greek hemophilia subjects: PO-MO-203
- Author
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TSAKLAKIDOU, D., VARAKLIOTI, A., KOURAMBA, A., PROVELENGIOS, S., KELAIDIS, E., and KATSAROU, O.
- Published
- 2012
13. Quality of Life among Patients with Retinal Vein Occlusion: A Case-Control Study
- Author
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Chatzirallis, Alexandros, primary, Varaklioti, Agoritsa, additional, Sergentanis, Theodoros N., additional, Theodossiadis, Panagiotis, additional, and Chatziralli, Irini, additional
- Published
- 2021
- Full Text
- View/download PDF
14. Health-Related Quality of Life and Association With Arthropathy in Greek Patients with Hemophilia
- Author
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Olga Katsarou, Anna Kouramba, Agoritsa Varaklioti, Nick Kontodimopoulos, and Dimitris Niakas
- Subjects
Adult ,medicine.medical_specialty ,Population ,Pain ,030204 cardiovascular system & hematology ,Hemophilia A ,Affect (psychology) ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Quality of life ,hemophilia ,Surveys and Questionnaires ,Statistical significance ,Arthropathy ,Humans ,Medicine ,Young adult ,Haem-A-QoL ,education ,education.field_of_study ,Greece ,business.industry ,Original Articles ,Hematology ,General Medicine ,Middle Aged ,medicine.disease ,humanities ,3. Good health ,health-related quality of life ,Orthopedic surgery ,Quality of Life ,Physical therapy ,Normative ,Joint Diseases ,business ,orthopedic score ,arthropathy ,030215 immunology - Abstract
Health-related quality of life (HRQoL) is increasingly implicated in contemporary hemophilia management. This study focuses on the assessment of HRQoL in Greek patients with hemophilia and the comparison with normative data from the general population, as well as on the extent arthropathy may affect the patients’ HRQoL. One hundred and nine adult patients completed the Greek social functioning (SF-36) and Haem-A-QoL questionnaires. Arthropathy was assessed by both the World Federation of Hemophilia clinical score and Pettersson radiological score. The most impaired domains of Haem-A-QoL were sports/leisure (SL) and physical health (PH; mean scores 61.2 and 42.2, respectively). The patients experienced statistically significant lower mean scores in all SF-36 domains than the normative sample, especially in role physical (RPH), bodily pain (BP), and general health (GH) subscales. Among Haem-A-QoL subscales, SL and PH were found strongly associated with severity of arthropathy using both orthopedic scores ( P < .001), and maintained the statistical significance after adjustment for age ( P < .05). A poor orthopedic status was also negatively associated with certain SF-36 subscales. However, none of these correlations remained after adjustment with age. Compared to normative data from Greece, patients with hemophilia showed deterioration in all HRQoL subscales, with a more pronounced effect in RPH, BP, and GH subscales. Health-related quality of life was strongly influenced by arthropathy, mainly in the physical aspects of HRQoL. The use of the disease-specific Haem-A-QoL tool can capture additional associations between HRQoL and hemophilic arthropathy.
- Published
- 2017
- Full Text
- View/download PDF
15. Molecular Characterization of Occult Hepatitis B Cases in Greek Blood Donors
- Author
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Katsoulidou, Antigoni, Paraskevis, Dimitrios, Magiorkinis, Emmanouil, Moschidis, Zissis, Haida, Catherine, Hatzitheodorou, Eleni, Varaklioti, Agoritsa, Karafoulidou, Anastasia, Hatzitaki, Maria, Kavallierou, Lilian, Mouzaki, Athanasia, Andrioti, Evaggelia, Veneti, Chrysanthi, Kaperoni, Athanasia, Zervou, Eleftheria, Politis, Constantina, and Hatzakis, Angelos
- Published
- 2009
- Full Text
- View/download PDF
16. COMPARISON OF THE PRESENCE OF CW ANTIGEN OF THE RHESUS BLOOD SYSTEM IN BLOOD DONORS AND PATIENTS USING SEROLOGY AND MOLECULAR TECHNIQUES: P-264
- Author
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Sarantopoulos, A., Kotsi, P., Varaklioti, A., Moschidis, Z., Gavalaki, M., Markakis, K., and Karafoulidou, A.
- Published
- 2009
17. OVERALL REPRESENTATION OF NAT RESULTS AND CORRELATION OF NAT NEGATIVITY WITH SEROPOSITIVE BLOOD DONORS: P-064
- Author
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Varaklioti, A., Pantelaki, G., Kontopanou, A., Kapsalis, A., Tatsi, V., Moschidis, Z., Katsoulidou, A., Hatzakis, A., Markakis, K., and Karafoulidou, A.
- Published
- 2009
18. EVIDENCE ON ANTI-HBc REACTIVITY AMONG GREEK BLOOD DONORS AND CORRELATION BETWEEN ANTI-HBc TITRE AND THE PRESENCE OF HBV DNA: P-085
- Author
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Varaklioti, A., Kalfa, I., Kapsalis, A., Kouramba, A., Kotsi, P., and Karafoulidou, A.
- Published
- 2006
19. Effective analysis of indeterminate results using TMA assay compared to other confirmatory tests
- Author
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Varaklioti, A, Moschidis, Z, Kontopanou, A, Kapsalis, A, Tatsi, V, Siskoudis, P, Kotsi, P, and Karafoulidou, A
- Published
- 2004
20. Incidence of HBV infection among young students in Greece
- Author
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Varaklioti, A, Gavalaki, M, Adraktas, Th, Siskoudis, P, Kontopanou, A, Miriokefalitaki, E, and Karafoulidou, A
- Published
- 2004
21. HCV Defective Genomes Promote Persistent Infection by Modulating the Viral Life Cycle
- Author
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Soumaya Benjelloun, Timokratis Karamitros, Beatrice Martinez-Gonzales, Andreas Mentis, Hajar Chihab, Athanassios Kakkanas, Vasiliki Pogka, Agnès Marchio, Pascal Pineau, Pelagia Foka, Agoritsa Varaklioti, Ioannis Koskinas, Eirini Karamichali, Antonis Kalliaropoulos, Urania Georgopoulou, Molecular Virology Laboratory = Laboratoire de Virologie moléculaire [Athènes], Institut Pasteur Hellénique, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Institut Pasteur du Maroc, Réseau International des Instituts Pasteur (RIIP), Organisation Nucléaire et Oncogenèse / Nuclear Organization and Oncogenesis, Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM), Laboratoire de microbiologie médicale = Laboratory of Medical Microbiology [Athènes], This work was supported by the 'ACIP 2014-HEPADEFEXO,' Asklepios Gilead Hellas Grants Program and Empirikion foundation., Institut Pasteur [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM), and MARCHIO, Agnes
- Subjects
0301 basic medicine ,Microbiology (medical) ,030106 microbiology ,lcsh:QR1-502 ,exosomes ,Biology ,Microbiology ,Genome ,lcsh:Microbiology ,viral persistence ,03 medical and health sciences ,Immune system ,Viral life cycle ,ComputingMilieux_MISCELLANEOUS ,Original Research ,[SDV.MP.VIR] Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,defective genomes ,Wild type ,virus diseases ,RNA ,Virology ,digestive system diseases ,Microvesicles ,3. Good health ,030104 developmental biology ,Viral replication ,Cell culture ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,viral replication ,hepatitis C - Abstract
Defective interfering (DI) RNAs have been detected in several human viruses. HCV in-frame deletions mutants (IFDMs), missing mainly the envelope proteins, have been found in patient sera and liver tissues. IFDMs replicate independently and can be trans-packaged into infectious virions in the presence of full length viral genome. So far, their biological role is unclear. In this study, we have isolated and cloned IFDMs from sera samples and liver tissues of patients infected with HCV genotypes 1b, 2a, and 3a. IFDMs were present in up to 26% of samples tested. Using the in vitro HCV cell culture system, co-expression of the wild type (wt) HCV replicon with HCV IFDMs RNA resulted in increased HCV replication. Additionally, co-transfection of the HCV full length genome RNA and a defective mutant missing the envelope region led to increased viral release, collectively suggesting an important biological role for IFDMs in the virus life cycle. Recently, exosomes, masters of intercellular communication, have been implicated in the transport of HCV viral genomes. We report for the first time that exosomal RNA isolated from HCV sera samples contains HCV defective genomes. We also demonstrate that inhibition of exosomal biogenesis and release influences HCV viral replication. Overall, we provide evidence that the presence of HCV IFDMs affects both viral replication and release. IFDMs exploit exosomes as means of transport, a way to evade the immune system, to spread more efficiently and possibly maintain persistent infection.
- Published
- 2018
- Full Text
- View/download PDF
22. Early caloric deprivation in preterm infants affects Bayley-III scales performance at 18-24 months of corrected age
- Author
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Agoritsa Varaklioti, Paraskevi Karagianni, Georgia Kuriakeli, Christos Tsakalidis, Helen Christou, Maria Lithoxopoulou, Philip Domeyer, Dimitrios Rallis, Vasiliki Soubasi, and Evanthia Goutsiou
- Subjects
030506 rehabilitation ,Pediatrics ,medicine.medical_specialty ,Birth weight ,Developmental Disabilities ,Gestational Age ,Infant, Premature, Diseases ,Enteral administration ,03 medical and health sciences ,Corrected Age ,Risk Factors ,Developmental and Educational Psychology ,medicine ,Humans ,0501 psychology and cognitive sciences ,Prospective Studies ,Bronchopulmonary Dysplasia ,Cerebral Intraventricular Hemorrhage ,05 social sciences ,Infant, Newborn ,Gestational age ,Caloric theory ,Infant ,medicine.disease ,Infant Nutrition Disorders ,Clinical Psychology ,Bronchopulmonary dysplasia ,Cohort ,Necrotizing enterocolitis ,Female ,0305 other medical science ,Psychology ,Energy Intake ,Food Deprivation ,050104 developmental & child psychology ,Follow-Up Studies - Abstract
Adequate nutrition is essential for optimal neurodevelopment to preterm infants. Our aim was to evaluate the impact of caloric deprivation on Bayley-III scales performance at 18-24 months of corrected age, in a cohort of preterm infants.We prospectively enrolled infants with gestational age30 weeks and birth weight1500 g. Apart from a whole cohort analysis, we performed a subgroup analysis between infants received inadequate calories (85 Kcal/kg/day) during the first two weeks of age, compared to a standard nutrition group. All infants underwent a Bayley-III assessment at 18-24 months of corrected age.From the 63 preterm infants analysed, 25% had caloric deprivation compared to 75% with adequate nutrition. Caloric deprived infants were of lower gestational age and birth weight, and received a lower amount of enteral feeding during the first 14 days of age. There were no differences between the two groups regarding the common neonatal co-morbidities. Caloric deprived infants had significantly lower composite index scores at 18-24 months of corrected age. Caloric deprivation, late onset sepsis, necrotizing enterocolitis, and bronchopulmonary dysplasia were significant risk factors of neurodevelopmental impairment.Several neonatal factors affect the neurodevelopmental outcome of preterm infants, and nutrition may pose an important role.
- Published
- 2018
23. Η επαγγελματική εξουθένωση νοσηλευτικού και διοικητικού προσωπικού και διερεύνηση της τάσης μεταπήδησης των νοσηλευτών σε διοικητικές θέσεις
- Author
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Grigoropoulou, M., Patsaki, A., Katsari, B., Sarafis, P., Panagiotis Bamidis, Varaklioti, A., and Domeyer, F.
- Subjects
Intention to change ,Nursing and administrative staff ,MEDICAL AND HEALTH SCIENCES ,Demographic characteristics ,Work quality of life ,Professional burnout - Abstract
OBJECTIVE To measure the prevalence of burnout among hospital nursing and administrative staff and to explore its possible correlation with demographic and work factors and its impact on health-related quality of life (HRQoL). In addition, the possible intention of nurses to change to a management position was investigated. METHOD The study sample consisted of 292 nursing and administrative staff of two hospitals, one in the capital city and one in a provincial town. Data collection was by self-completion of questionnaires: Maslach’s Burnout Inventory (MBI), the Short Form Questionnaire (SF-36) for assessment of HRQoL, along with two questions constructed by the researchers. Data analysis was performed using the Statistical Package for Social Sciences (SPSS) v. 19.0. RESULTS The respondents expressed a high rate of burnout: 26.4% based on emotional exhaustion, 42.5% based on lack of personal accomplishment and 34.9% based on depersonalization. Linear regression analysis showed that emotional exhaustion has an effect on all the dimensions of QoL measured by SF-36 (all p≤0.001). The dimension of depersonalization had an impact on physical function (p=0.011) and emotional role (p
- Published
- 2018
24. Modulation of the Hepatitis C Virus RNA-dependent RNA Polymerase Activity by the Non-Structural (NS) 3 Helicase and the NS4B Membrane Protein
- Author
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Piccininni, Sabina, Varaklioti, Agoritsa, Nardelli, Maria, Dave, Bhuvanesh, Raney, Kevin D., and McCarthy, John E.G.
- Published
- 2002
- Full Text
- View/download PDF
25. Development of a new ultra sensitive real-time PCR assay (ultra sensitive RTQ-PCR) for the quantification of HBV-DNA
- Author
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Varaklioti Agoritsa, Hatzitheodorou Helen, Moschidis Zisis, Katsoulidou Antigoni, Haida Catherine, Beloukas Apostolos, Paraskevis Dimitrios, Sypsa Vana, and Hatzakis Angelos
- Subjects
Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Improved sensitivity of HBV-DNA tests is of critical importance for the management of HBV infection. Our aim was to develop and assess a new ultra sensitive in-house real-time PCR assay for HBV-DNA quantification (ultra sensitive RTQ-PCR). Results Previously used HBV-DNA standards were calibrated against the WHO 1st International Standard for HBV-DNA (OptiQuant® HBV-DNA Quantification Panel, Accrometrix Europe B.V.). The 95% and 50% HBV-DNA detection end-point of the assay were 22.2 and 8.4 IU/mL. According to the calibration results, 1 IU/mL equals 2.8 copies/mL. Importantly the clinical performance of the ultra sensitive real-time PCR was tested similar (67%) to the Procleix Ultrio discriminatory HBV test (dHBV) (70%) in low-titer samples from patients with occult Hepatitis B. Finally, in the comparison of ultra sensitive RTQ-PCR with the commercially available COBAS TaqMan HBV Test, the in-house assay identified 94.7% of the 94 specimens as positive versus 90.4% identified by TaqMan, while the quantitative results that were positive by both assay were strongly correlated (r = 0.979). Conclusions We report a new ultra sensitive real time PCR molecular beacon based assay with remarkable analytical and clinical sensitivity, calibrated against the WHO 1st International standard.
- Published
- 2010
- Full Text
- View/download PDF
26. Alternate Translation Occurs within the Core Coding Region of the Hepatitis C Viral Genome
- Author
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Varaklioti, Agoritsa, Vassilaki, Niki, Georgopoulou, Urania, and Mavromara, Penelope
- Published
- 2002
- Full Text
- View/download PDF
27. HCV Defective Genomes Promote Persistent Infection by Modulating the Viral Life Cycle
- Author
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Karamichali, Eirini Chihab, Hajar Kakkanas, Athanassios and Marchio, Agnes Karamitros, Timokratis Pogka, Vasiliki and Varaklioti, Agoritsa Kalliaropoulos, Antonis Martinez-Gonzales, Beatrice Foka, Pelagia Koskinas, Ioannis Mentis, Andreas and Benjelloun, Soumaya Pineau, Pascal Georgopoulou, Urania
- Subjects
virus diseases ,digestive system diseases - Abstract
Defective interfering (DI) RNAs have been detected in several human viruses. HCV in-frame deletions mutants (IFDMs), missing mainly the envelope proteins, have been found in patient sera and liver tissues. IFDMs replicate independently and can be trans-packaged into infectious virions in the presence of full length viral genome. So far, their biological role is unclear. In this study, we have isolated and cloned IFDMs from sera samples and liver tissues of patients infected with HCV genotypes 1b, 2a, and 3a. IFDMs were present in up to 26% of samples tested. Using the in vitro HCV cell culture system, co-expression of the wild type (wt) HCV replicon with HCV IFDMs RNA resulted in increased HCV replication. Additionally, co-transfection of the HCV full length genome RNA and a defective mutant missing the envelope region led to increased viral release, collectively suggesting an important biological role for IFDMs in the virus life cycle. Recently, exosomes, masters of intercellular communication, have been implicated in the transport of HCV viral genomes. We report for the first time that exosomal RNA isolated from HCV sera samples contains HCV defective genomes. We also demonstrate that inhibition of exosomal biogenesis and release influences HCV viral replication. Overall, we provide evidence that the presence of HCV IFDMs affects both viral replication and release. IFDMs exploit exosomes as means of transport, a way to evade the immune system, to spread more efficiently and possibly maintain persistent infection.
- Published
- 2018
28. Health-Related Quality of Life and Association With Arthropathy in Greek Patients with Hemophilia
- Author
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Varaklioti, A. Kontodimopoulos, N. Niakas, D. Kouramba, A. Katsarou, O.
- Subjects
humanities - Abstract
Health-related quality of life (HRQoL) is increasingly implicated in contemporary hemophilia management. This study focuses on the assessment of HRQoL in Greek patients with hemophilia and the comparison with normative data from the general population, as well as on the extent arthropathy may affect the patients’ HRQoL. One hundred and nine adult patients completed the Greek social functioning (SF-36) and Haem-A-QoL questionnaires. Arthropathy was assessed by both the World Federation of Hemophilia clinical score and Pettersson radiological score. The most impaired domains of Haem-A-QoL were sports/leisure (SL) and physical health (PH; mean scores 61.2 and 42.2, respectively). The patients experienced statistically significant lower mean scores in all SF-36 domains than the normative sample, especially in role physical (RPH), bodily pain (BP), and general health (GH) subscales. Among Haem-A-QoL subscales, SL and PH were found strongly associated with severity of arthropathy using both orthopedic scores (P
- Published
- 2018
29. Impact of Radiofrequency Ablation and Antiarrhythmic Medications on the Quality of Life of Patients with Supraventricular Tachycardias: Preliminary Validation of the Greek Version of the Umea22 (U22) Questionnaire
- Author
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Panagiota Kyriakou, Ioannis K. Lagos, Antonios P. Antoniadis, Nikolaos Fragakis, Agoritsa Varaklioti, Vassilios Vassilikos, Philippe-Richard Domeyer, Vasiliki Katsari, and Smaragda Ch. Giannakidou
- Subjects
Tachycardia ,Adult ,Male ,medicine.medical_specialty ,Referral ,Article Subject ,Radiofrequency ablation ,lcsh:Medicine ,030204 cardiovascular system & hematology ,Affect (psychology) ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Quality of life ,law ,Internal medicine ,Surveys and Questionnaires ,medicine ,Tachycardia, Supraventricular ,Humans ,Radiofrequency Ablation ,General Immunology and Microbiology ,Medical treatment ,business.industry ,lcsh:R ,Confounding ,Reproducibility of Results ,General Medicine ,Middle Aged ,Heart contractility ,Multivariate Analysis ,Linear Models ,Quality of Life ,030211 gastroenterology & hepatology ,Female ,medicine.symptom ,business ,Factor Analysis, Statistical ,Anti-Arrhythmia Agents ,Follow-Up Studies ,Research Article - Abstract
Objective. This study aims to (i) translate, culturally adapt, and preliminarily validate the arrhythmia-specific Umea22 (U22) questionnaire and (ii) assess the impact of radiofrequency (RF) ablation and medical treatment on the quality of life of patients with supraventricular tachycardias (SVTs). Methods. A total of 140 patients with atrioventricular nodal re-entry tachycardia (AVNRT) and atrioventricular re-entry tachycardia (AVRT) were enrolled in the study. Of these, 100 patients underwent RF ablation (group A) and 40 patients were managed with antiarrhythmic medications (group B). Health-related quality of life (HRQoL) was assessed for both groups using the Short Form-36 Health Survey (SF-36) and the arrhythmia-specific Umea22 (U22) questionnaire at baseline and 3-month follow-up. Exploratory and confirmatory factor analyses were performed to assess the validity of the U22 questionnaire. Univariate comparisons of HRQoL scores between study timepoints and multivariate regression analyses adjusting for baseline confounders were conducted. Results. The factor analysis of the U22 questionnaire yielded a six-factor model (“burden of spells”; “heart contractility”; “character of spells”; “general/non-specific feeling”; “other specific somatic symptoms”; “fear”) with acceptable fit results. Patients of group A showed significant improvement in all SF-36 and U22 scores at 3 months’ follow-up compared to baseline (all p Conclusion. The Greek version of the U22 questionnaire is a valid tool to assess SVT-related symptoms. RF ablation appears to exert more pronounced beneficial outcomes on HRQoL of patients with SVTs compared to medical treatment. Prompt referral of patients with SVTs to specialist centers may favorably affect their quality of life and should be encouraged.
- Published
- 2017
30. HCV Defective Genomes Promote Persistent Infection by Modulating the Viral Life Cycle
- Author
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Karamichali, Eirini, primary, Chihab, Hajar, additional, Kakkanas, Athanassios, additional, Marchio, Agnes, additional, Karamitros, Timokratis, additional, Pogka, Vasiliki, additional, Varaklioti, Agoritsa, additional, Kalliaropoulos, Antonis, additional, Martinez-Gonzales, Beatrice, additional, Foka, Pelagia, additional, Koskinas, Ioannis, additional, Mentis, Andreas, additional, Benjelloun, Soumaya, additional, Pineau, Pascal, additional, and Georgopoulou, Urania, additional
- Published
- 2018
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31. Impact of Radiofrequency Ablation and Antiarrhythmic Medications on the Quality of Life of Patients with Supraventricular Tachycardias: Preliminary Validation of the Greek Version of the Umea22 (U22) Questionnaire
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Domeyer, Philippe-Richard, primary, Giannakidou, Smaragda Ch., additional, Kyriakou, Panagiota, additional, Katsari, Vasiliki, additional, Antoniadis, Antonios P., additional, Lagos, Ioannis K., additional, Fragakis, Nikolaos, additional, Varaklioti, Agoritsa, additional, and Vassilikos, Vassilios P., additional
- Published
- 2018
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32. Outcome measures analysis following total knee arthroplasty in patients with severe haemophilic arthropathy of the knee.
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Zygogiannis, Konstantinos, Kouramba, Anna, Kalatzis, Dimitrios, Christidi, Styliani-Despoina, Katsarou, Olga, Varaklioti, Agoritsa, and Thivaios, Georgios C.
- Subjects
TOTAL knee replacement ,KNEE pain ,JOINT diseases ,KNEE ,QUALITY of life ,PHYSICAL mobility - Abstract
Total knee arthroplasty (TKA) has been the gold standard for treating severe haemophilic arthropathy of the knee when all conservative measures fail. However, performing a TKA in patients with haemophilic arthropathy is difficult due to severe joint deformity and destruction, and poor bone quality. The aim of the present study was to evaluate the short-term results of TKA in the treatment of knee haemophilic arthropathy in a tertiary referral centre, with an emphasis on health-related quality of life and knee function. A prospective study was conducted that included 19 male patients with end-stage haemophilic knee arthropathy who underwent TKA in a tertiary referral centre. Clinical outcome and health-related quality of life were assessed by the Western Ontario and McMaster Universities Arthritis (WOMAC) index and the Short Form-36 (SF-36) both pre-operatively and at 1-year post-operatively. The mean age of the patients was 50.37±7.63 years (range, 40-65 years). Pre-operative health-related quality of life was impaired in all patients in all SF-36 domains but was markedly improved after TKA. Knee function in all dimensions (pain, stiffness and physical function), as measured by the WOMAC questionnaire, significantly improved after TKA. Pre-operative pain, stiffness and function, along with total WOMAC score, were strongly and negatively correlated with pre-operative SF-36. Overall, the present study indicated a significant improvement in quality of life and clinical outcome after TKA in patients with advanced haemophilic arthropathy. More studies with longer follow-up periods in a larger population are needed to fully elucidate the mid- and long-term values of TKA in haemophilic patients. [ABSTRACT FROM AUTHOR]
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- 2024
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33. Mutational analysis of a conserved tetraloop in the 5′ untranslated region of hepatitis C virus identifies a novel RNA element essential for the internal ribosome entry site function
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Psaridi, L, Georgopoulou, U, Varaklioti, A, and Mavromara, P
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- 1999
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34. Occult hepatitis B virus infection in Greek patients with congenital bleeding disorders
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Anna Kouramba, Olga Katsarou, Panagiota Ioannidou, and Agoritsa Varaklioti
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0301 basic medicine ,Microbiology (medical) ,Adult ,Male ,HBsAg ,medicine.medical_specialty ,Haemophilia A ,Hemorrhage ,Biology ,Haemophilia ,medicine.disease_cause ,Microbiology ,Gastroenterology ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Internal medicine ,Genetics ,medicine ,Von Willebrand disease ,Prevalence ,Humans ,Hepatitis B e Antigens ,Hepatitis B Antibodies ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Aged ,Hepatitis B virus ,Hepatitis B Surface Antigens ,Greece ,Incidence (epidemiology) ,virus diseases ,Middle Aged ,Viral Load ,medicine.disease ,Hepatitis B ,Virology ,Hepatitis B Core Antigens ,digestive system diseases ,030104 developmental biology ,Infectious Diseases ,HBeAg ,DNA, Viral ,030211 gastroenterology & hepatology ,Female ,Viral load - Abstract
Occult Hepatitis B Infection (OBI) is a form of chronic HBV infection characterized by low level HBV DNA, without detectable HBV surface antigen (HBsAg). OBI is frequently associated with the presence of anti-HBc and in some cases also with anti-HBs. Patients, who formerly received non-inactivated factor concentrates, can potentially be considered at high risk for OBI, especially since these patients usually are HIV or HCV co-infected. This study aimed to assess the prevalence of occult HBV infection in Greek patients with hereditary bleeding disorders. The study sample comprised of 114 patients from a single haemophilia center. All patients were screened for HBV serum markers and individually tested for HBV DNA using a qualitative PCR. Presence of HBV DNA was further confirmed by quantification of viral load with an ultrasensitive in-house real time PCR. 88 and 21 patients with haemophilia A and B, respectively, 4 patients with von Willebrand Disease and 1 patient with severe factor VII deficiency were screened for the presence of OBI. Anti-HBc were detected in 53 (46.5%) subjects; 18 of them were anti-HBs(−) and 35 anti-HBs(+). Anti-HBe were present in 26 subjects. Two out of 114 patients were HBsAg(+). Of the remaining 112 HBsAg(−) patients tested, two (1.8%) were found HBsAg(−), HBV DNA(+), anti-HBc(+) and anti-HBs(−) and were identified as potential OBI cases. Both cases exhibited very low DNA levels; 38.2 IU/mL in patient A and 14.2 IU/mL in patient B. Both patients were HBeAg(−), but patient A had HBe antibodies. Patient B was also HIV/HCV co-infected. In conclusion, two cases of OBI with low HBV viraemia were identified among patients with congenital bleeding disorders. Although the incidence in our sample is moderately low (1.8%), close monitoring of these infections is of great clinical significance, especially in patients with co-infections and concomitant immunosuppression.
- Published
- 2016
35. Alterations in the iron homeostasis network: A driving force for macrophage-mediated hepatitis C virus persistency
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Dionyssios Giannimaras, Eleni Kyratzopoulou, John Koskinas, Urania Georgopoulou, Pelagia Foka, Alexios Dimitriadis, Agoritsa Varaklioti, Avgi Mamalaki, and Eirini Karamichali
- Subjects
0301 basic medicine ,Microbiology (medical) ,Carcinoma, Hepatocellular ,Iron Overload ,Iron ,Immunology ,Ferroportin ,Hepacivirus ,Virus Replication ,Microbiology ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Hepcidins ,Hepcidin ,Macrophage ,Homeostasis ,Humans ,biology ,Macrophages ,Viral translation ,Liver Neoplasms ,virus diseases ,Hepatitis C, Chronic ,Virology ,Hepatitis C ,digestive system diseases ,Coculture Techniques ,Ferritin ,030104 developmental biology ,Infectious Diseases ,Editorial ,Viral replication ,Ferritins ,biology.protein ,030211 gastroenterology & hepatology ,Parasitology ,Replicon ,HAMP ,Viral load - Abstract
Mechanisms that favor Hepatitis C virus (HCV) persistence over clearance are unclear, but involve defective innate immunity. Chronic infection is characterized by hepatic iron overload, hyperferraemia and hyperferittinaemia. Hepcidin modulates iron egress via ferroportin and its storage in ferritin. Chronic HCV patients have decreased hepcidin, while HCV replication is modified by HAMP silencing. We aimed to investigate interactions between HCV and hepcidin, during acute and chronic disease, and putative alterations in cellular iron homeostasis that enhance HCV propagation and promote viral persistence. Thus, we used HCV JFH-1-infected co-cultures of Huh7.5 hepatoma and THP-1 macrophage cells, HCV patients' sera and Huh7 hepcidin-expressing cells transfected with HCV replicons. Hepcidin levels were elevated in acutely infected patients, but correlated with viral load in chronic patients. HAMP expression was up-regulated early in HCV infection in vitro, with corresponding changes in ferritin and FPN. Hepcidin overexpression enhanced both viral translation and replication. In HCV-infected co-cultures, we observed increased hepcidin, reduced hepatoma ferritin and a concurrent rise in macrophaghic ferritin over time. Altered iron levels complemented amplified replication in hepatoma cells and one replication round in macrophages. Iron-loading of macrophages led to enhancement of hepatic HCV replication through reversed ferritin "flow." Viral transmissibility from infected macrophages to naive hepatoma cells was induced by iron. We propose that HCV control over iron occurs both by intracellular iron sequestration, through hepcidin, and intercellular iron mobilisation via ferritin, as means toward enhanced replication. Persistence could be achieved through HCV-induced changes in macrophagic iron that enhances viral replication in these cells.
- Published
- 2016
36. Alterations in the iron homeostasis network: A driving force for macrophage-mediated hepatitis C virus persistency
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Foka, Pelagia Dimitriadis, Alexios Karamichali, Eirini and Kyratzopoulou, Eleni Giannimaras, Dionyssios Koskinas, John and Varaklioti, Agoritsa Mamalaki, Avgi Georgopoulou, Urania
- Subjects
virus diseases ,digestive system diseases - Abstract
Mechanisms that favor Hepatitis C virus (HCV) persistence over clearance are unclear, but involve defective innate immunity. Chronic infection is characterized by hepatic iron overload, hyperferraemia and hyperferittinaemia. Hepcidin modulates iron egress via ferroportin and its storage in ferritin. Chronic HCV patients have decreased hepcidin, while HCV replication is modified by HAMP silencing. We aimed to investigate interactions between HCV and hepcidin, during acute and chronic disease, and putative alterations in cellular iron homeostasis that enhance HCV propagation and promote viral persistence. Thus, we used HCV JFH-1-infected co-cultures of Huh7.5 hepatoma and THP-1 macrophage cells, HCV patients' sera and Huh7 hepcidin-expressing cells transfected with HCV replicons. Hepcidin levels were elevated in acutely infected patients, but correlated with viral load in chronic patients. HAMP expression was up-regulated early in HCV infection in vitro, with corresponding changes in ferritin and FPN. Hepcidin overexpression enhanced both viral translation and replication. In HCV-infected co-cultures, we observed increased hepcidin, reduced hepatoma ferritin and a concurrent rise in macrophaghic ferritin over time. Altered iron levels complemented amplified replication in hepatoma cells and one replication round in macrophages. Iron-loading of macrophages led to enhancement of hepatic HCV replication through reversed ferritin flow. Viral transmissibility from infected macrophages to naive hepatoma cells was induced by iron. We propose that HCV control over iron occurs both by intracellular iron sequestration, through hepcidin, and intercellular iron mobilisation via ferritin, as means toward enhanced replication. Persistence could be achieved through HCV-induced changes in macrophagic iron that enhances viral replication in these cells.
- Published
- 2016
37. Διερεύνηση της αυτο-αξιολόγησης των μαθησιακών αποτελεσμάτων της Ενότητας της ΔΜΥ 51 του ΜΠΣ Διοίκηση Μονάδων Υγείας του ΕΑΠ
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MALLIAROU, Maria, primary, Sarafis, Pavlos, additional, Paliouras, Dimitris, additional, Nikolentzos, Athanasios, additional, Varaklioti, Agoritsa, additional, Domager, Filippos, additional, Mourtou, Efi, additional, Ladopoulou, Kostantia, additional, Pappa, Evelina, additional, Vlassis, Ioannis, additional, Trigoni, Maria, additional, Papadopoulos, Aggelos, additional, and Bamidis, Panagiotis, additional
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- 2017
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38. Health-Related Quality of Life and Association With Arthropathy in Greek Patients with Hemophilia
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Varaklioti, Agoritsa, primary, Kontodimopoulos, Nick, additional, Niakas, Dimitris, additional, Kouramba, Anna, additional, and Katsarou, Olga, additional
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- 2017
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39. Alterations in the iron homeostasis network: A driving force for macrophage-mediated hepatitis C virus persistency
- Author
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Foka, Pelagia, primary, Dimitriadis, Alexios, additional, Karamichali, Eirini, additional, Kyratzopoulou, Eleni, additional, Giannimaras, Dionyssios, additional, Koskinas, John, additional, Varaklioti, Agoritsa, additional, Mamalaki, Avgi, additional, and Georgopoulou, Urania, additional
- Published
- 2016
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40. Psychometric Properties of the Greek Haem-A-QoL for Measuring Quality of Life in Greek Haemophilia Patients
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Agoritsa Varaklioti, Dimitris Niakas, Olga Katsarou, and Nick Kontodimopoulos
- Subjects
Adult ,Male ,medicine.medical_specialty ,Multivariate analysis ,Article Subject ,Psychometrics ,Adolescent ,lcsh:Medicine ,Haemophilia ,Hemophilia A ,General Biochemistry, Genetics and Molecular Biology ,Statistics, Nonparametric ,Young Adult ,Quality of life ,Cronbach's alpha ,Surveys and Questionnaires ,Medicine ,Humans ,Psychiatry ,Reliability (statistics) ,Aged ,Demography ,General Immunology and Microbiology ,Greece ,business.industry ,lcsh:R ,Construct validity ,Reproducibility of Results ,General Medicine ,Stepwise regression ,Middle Aged ,medicine.disease ,humanities ,Health ,Multivariate Analysis ,Linear Models ,Quality of Life ,Female ,business ,Clinical psychology ,Research Article - Abstract
Background and Objectives. Health Related Quality of Life (HRQoL) is an important health outcome measure in haemophilia. The aim of this study was to assess the psychometric properties of the Greek version of Haem-A-QoL, a disease-specific questionnaire for haemophiliacs. Methods. Haem-A-QoL and SF-36 were administered to 118 adult haemophilia patients. Hypothesized scale structure, internal consistency (Cronbach’s α), and test-retest reliability, as well as various types of construct validity were evaluated. Results. Scale structure of Haem-A-QoL was confirmed, with good item convergence (87%) and discrimination (80.6%) rates. Cronbach’s α was >0.70 for all but one dimension (dealing) and test-retest reliability was significantly high. The strength of Spearman’s correlations between Haem-A-QoL and SF-36 scales ranged from 0.25 to 0.75 ( ). Multiple stepwise linear regression analysis revealed that all but one Haem-A-QoL dimensions were important predictors of SF-36 scales. Known-groups comparisons yielded consistent support of the instruments’ construct validity and significant relationships were identified for age, educational level, haemophilia type, disease severity, and viral infections. Conclusion. Overall, the psychometric properties of the Greek version of Haem-A-QoL, resulting from this first time administration of the instrument to Greek adult haemophiliacs, confirmed it as a reliable and valid questionnaire for assessing haemophilia-specific HRQoL in Greece.
- Published
- 2014
41. Health-Related Quality of Life and Association With Arthropathy in Greek Patients with Hemophilia.
- Author
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Varaklioti, Agoritsa, Kontodimopoulos, Nick, Niakas, Dimitris, Kouramba, Anna, and Katsarou, Olga
- Abstract
Health-related quality of life (HRQoL) is increasingly implicated in contemporary hemophilia management. This study focuses on the assessment of HRQoL in Greek patients with hemophilia and the comparison with normative data from the general population, as well as on the extent arthropathy may affect the patients’ HRQoL. One hundred and nine adult patients completed the Greek social functioning (SF-36) and Haem-A-QoL questionnaires. Arthropathy was assessed by both the World Federation of Hemophilia clinical score and Pettersson radiological score. The most impaired domains of Haem-A-QoL were sports/leisure (SL) and physical health (PH; mean scores 61.2 and 42.2, respectively). The patients experienced statistically significant lower mean scores in all SF-36 domains than the normative sample, especially in role physical (RPH), bodily pain (BP), and general health (GH) subscales. Among Haem-A-QoL subscales, SL and PH were found strongly associated with severity of arthropathy using both orthopedic scores (P < .001), and maintained the statistical significance after adjustment for age (P < .05). A poor orthopedic status was also negatively associated with certain SF-36 subscales. However, none of these correlations remained after adjustment with age. Compared to normative data from Greece, patients with hemophilia showed deterioration in all HRQoL subscales, with a more pronounced effect in RPH, BP, and GH subscales. Health-related quality of life was strongly influenced by arthropathy, mainly in the physical aspects of HRQoL. The use of the disease-specific Haem-A-QoL tool can capture additional associations between HRQoL and hemophilic arthropathy. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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42. Development of a new ultra sensitive real-time PCR assay (ultra sensitive RTQ-PCR) for the quantification of HBV-DNA
- Author
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Antigoni Katsoulidou, Vana Sypsa, Helen Hatzitheodorou, Angelos Hatzakis, Agoritsa Varaklioti, C. Haida, Dimitrios Paraskevis, Apostolos Beloukas, and Zisis Moschidis
- Subjects
Hepatitis B virus ,Pcr assay ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Sensitivity and Specificity ,law.invention ,lcsh:Infectious and parasitic diseases ,law ,Molecular beacon ,Virology ,medicine ,TaqMan ,Humans ,lcsh:RC109-216 ,Polymerase chain reaction ,Ultra sensitive ,Methodology ,virus diseases ,Viral Load ,Hepatitis B ,Molecular biology ,digestive system diseases ,Real-time polymerase chain reaction ,Infectious Diseases ,DNA, Viral ,Viral load - Abstract
Background Improved sensitivity of HBV-DNA tests is of critical importance for the management of HBV infection. Our aim was to develop and assess a new ultra sensitive in-house real-time PCR assay for HBV-DNA quantification (ultra sensitive RTQ-PCR). Results Previously used HBV-DNA standards were calibrated against the WHO 1st International Standard for HBV-DNA (OptiQuant® HBV-DNA Quantification Panel, Accrometrix Europe B.V.). The 95% and 50% HBV-DNA detection end-point of the assay were 22.2 and 8.4 IU/mL. According to the calibration results, 1 IU/mL equals 2.8 copies/mL. Importantly the clinical performance of the ultra sensitive real-time PCR was tested similar (67%) to the Procleix Ultrio discriminatory HBV test (dHBV) (70%) in low-titer samples from patients with occult Hepatitis B. Finally, in the comparison of ultra sensitive RTQ-PCR with the commercially available COBAS TaqMan HBV Test, the in-house assay identified 94.7% of the 94 specimens as positive versus 90.4% identified by TaqMan, while the quantitative results that were positive by both assay were strongly correlated (r = 0.979). Conclusions We report a new ultra sensitive real time PCR molecular beacon based assay with remarkable analytical and clinical sensitivity, calibrated against the WHO 1st International standard.
- Published
- 2010
43. Development of a new ultra sensitive real-time PCR assay (ultra sensitive RTQ-PCR) for the quantification of HBV-DNA
- Author
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Paraskevis, D. Beloukas, A. Haida, C. Katsoulidou, A. Moschidis, Z. Hatzitheodorou, H. Varaklioti, A. Sypsa, V. Hatzakis, A.
- Abstract
Background. Improved sensitivity of HBV-DNA tests is of critical importance for the management of HBV infection. Our aim was to develop and assess a new ultra sensitive in-house real-time PCR assay for HBV-DNA quantification (ultra sensitive RTQ-PCR). Results. Previously used HBV-DNA standards were calibrated against the WHO 1st International Standard for HBV-DNA (OptiQuant HBV-DNA Quantification Panel, Accrometrix Europe B.V.). The 95% and 50% HBV-DNA detection end-point of the assay were 22.2 and 8.4 IU/mL. According to the calibration results, 1 IU/mL equals 2.8 copies/mL. Importantly the clinical performance of the ultra sensitive real-time PCR was tested similar (67%) to the Procleix Ultrio discriminatory HBV test (dHBV) (70%) in low-titer samples from patients with occult Hepatitis B. Finally, in the comparison of ultra sensitive RTQ-PCR with the commercially available COBAS TaqMan HBV Test, the in-house assay identified 94.7% of the 94 specimens as positive versus 90.4% identified by TaqMan, while the quantitative results that were positive by both assay were strongly correlated (r = 0.979). Conclusions. We report a new ultra sensitive real time PCR molecular beacon based assay with remarkable analytical and clinical sensitivity, calibrated against the WHO 1st International standard. © 2010 Paraskevis et al; licensee BioMed Central Ltd.
- Published
- 2010
44. Molecular characterization of occult hepatitis B cases in Greek blood donors
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Chrysanthi Veneti, Zissis Moschidis, Constantina Politis, Agoritsa Varaklioti, Emmanouil Magiorkinis, E. Hatzitheodorou, Eleftheria Zervou, Maria Hatzitaki, Antigoni Katsoulidou, Athanasia Kaperoni, C. Haida, Athanasia Mouzaki, Lilian Kavallierou, Angelos Hatzakis, Dimitrios Paraskevis, Evaggelia Andrioti, and Anastasia Karafoulidou
- Subjects
Adult ,Male ,HBsAg ,Hepatitis B virus ,Genotype ,Blood Donors ,Biology ,medicine.disease_cause ,Polymerase Chain Reaction ,Serology ,law.invention ,law ,Virology ,medicine ,Humans ,Polymerase chain reaction ,Phylogeny ,Hepatitis B Surface Antigens ,Greece ,virus diseases ,Sequence Analysis, DNA ,Hepatitis B ,Middle Aged ,Viral Load ,Branched DNA assay ,medicine.disease ,digestive system diseases ,Infectious Diseases ,Real-time polymerase chain reaction ,Amino Acid Substitution ,Immunology ,DNA, Viral ,Female ,Viral load - Abstract
The use of sensitive nucleic acid testing for hepatitis B virus in blood donors revealed a number of HBV DNA(+) cases among HBsAg(-) donors, a status known as occult HBV infection. The purpose of this study was the serological and molecular characterization of occult HBV infection in Greek blood donors. A prospective study was undertaken in order to identify occult HBV infection cases in blood donors. As part of the routine screening of blood donations in Greece, blood units were screened individually by a multiplex HIV-1/HCV/HBV nucleic acid assay. Initially reactive samples were retested with discriminatory assays. HBV DNA(+)/HBsAg(-) samples were tested further for HBV serological markers and HBV DNA was quantified by real-time PCR. Molecular characterization was performed by sequencing the envelope and polymerase genes of HBV. Preliminary screening revealed 21 occult cases with the following patterns: anti-HBc only: 7 donors, anti-HBc/anti-HBs: 7 donors, anti-HBc/anti-HBe: 5 donors, anti-HBc/anti-HBs/anti-HBe: 2 donors. In all cases, the HBV DNA load was
- Published
- 2009
45. Green fluorescent protein - Tagged HCV non-enveloped capsid like particles: development of a new tool for tracking HCV core uptake
- Author
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Angela-Maria Pickl-Herk, Agoritsa Varaklioti, Panagiota Tsitoura, Alexandros A. Lavdas, Penelope Mavromara, Peter Hinterdorfer, Urania Georgopoulou, Devrim Oz-Arslan, Dieter Blaas, Rong Zhu, Konstantina Katsarou, and Elisavet Serti
- Subjects
Recombinant Fusion Proteins ,T-Lymphocytes ,Green Fluorescent Proteins ,Hepacivirus ,Biology ,Biochemistry ,Monocytes ,Green fluorescent protein ,law.invention ,Immune system ,Capsid ,Confocal microscopy ,law ,Cell Line, Tumor ,medicine ,Humans ,chemistry.chemical_classification ,B-Lymphocytes ,Monocyte ,Viral Core Proteins ,General Medicine ,Virus Internalization ,Fusion protein ,Molecular biology ,Cell biology ,medicine.anatomical_structure ,chemistry ,Hepatocytes ,Glycoprotein ,Intracellular - Abstract
Circulating ‘free’ non-enveloped Hepatitis C virus (HCV) core protein has been demonstrated in HCV-infected patients, and HCV subgenomes with deletions of the envelope proteins have been previously identified. Initial studies from our laboratory, previously published, indicated that expression of HCV core in insect cells can direct the formation of capsid-like particles lacking the envelope glycoproteins. These protein nanospheres, morphologically similar to natural capsids, were shown to be taken up by human hepatic cells and to produce cell-signalling events. To follow the intracellular fate of these particles we fused the core protein to eGFP. We demonstrate that the chimeric proteins core 173 -eGFP, eGFP-core 191 and eGFP-core 173 can be efficiently expressed, self-assembled, and form fluorescent non-enveloped capsid-like particles. By using confocal microscopy and FACS analysis, we provide evidence that the fluorescent nanospheres can not only enter human hepatic cells – the main target of HCV – but also human immune cells such as T and B lymphocytes, as well as human myeloid leukaemia cells differentiated along the monocyte/macrophage-like pathway. The fluorescent particles might thus be used to trace the intracellular trafficking of naked HCV capsids as showed by live microscopy and to further understand their biological significance.
- Published
- 2009
46. Molecular Characterization of Occult Hepatitis B Cases in Greek Blood Donors
- Author
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Katsoulidou, Antigoni Paraskevis, Dimitrios Magiorkinis, Emmanouil Moschidis, Zissis Haida, Catherine Hatzitheodorou, Eleni Varaklioti, Agoritsa Karafoulidou, Anastasia and Hatzitaki, Maria Kavallierou, Lilian Mouzaki, Athanasia and Andrioti, Evaggelia Veneti, Chrysanthi Kaperoni, Athanasia and Zervou, Eleftheria Politis, Constantina Hatzakis, Angelos
- Subjects
virus diseases ,digestive system diseases - Abstract
The use of sensitive nucleic acid testing for hepatitis B virus in blood donors revealed a number of HBV DNA(+) cases among HBsAg(-) donors, a status known as occult HBV infection. The purpose of this study was the serological and molecular characterization of occult HBV infection in Greek blood donors. A prospective study was undertaken in order to identify occult HBV infection cases in blood donors. As part of the routine screening of blood donations in Greece, blood units were screened individually by a multiplex HIV-1/HCV/HBV nucleic acid assay. Initially reactive samples were retested with discriminatory assays. HBV DNA(+)/HBsAg(-) samples were tested further for HBV serological markers and HBV DNA was quantified by real-time PCR. Molecular characterization was performed by sequencing the envelope and polymerase genes of HBV. Preliminary screening revealed 21 occult cases with the following patterns: anti-HBc only: 7 donors, anti-HBc/anti-HBs: 7 donors, anti-HBc/anti-HBe: 5 donors, anti-HBc/anti-HBs/anti-HBe: 2 donors. In all cases, the HBV DNA load was
- Published
- 2009
47. Evidence for cellular uptake of recombinant hepatitis C virus non-enveloped capsid-like particles
- Author
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Urania Georgopoulou, Panagiota Tsitoura, Constantina Politis, Dimitra Vagena, Agoritsa Varaklioti, Stéphane Petres, Penelope Mavromara, and Anastasia Karafoulidou
- Subjects
Untranslated region ,Core protein ,Hepatitis C virus ,viruses ,Biophysics ,Uptake ,Genome, Viral ,Hepacivirus ,Biology ,Spodoptera ,medicine.disease_cause ,Biochemistry ,law.invention ,Capsid ,Viral envelope ,Viral Envelope Proteins ,Structural Biology ,Confocal microscopy ,law ,Cell Line, Tumor ,Cricetinae ,Genetics ,medicine ,Animals ,Humans ,Baculovirus ,Molecular Biology ,Glycoproteins ,chemistry.chemical_classification ,Cell Biology ,Anti-core antibody ,Virology ,Molecular biology ,Hepatitis C ,digestive system diseases ,Recombinant Proteins ,NS2-3 protease ,chemistry ,Recombinant DNA ,Capsid-like particles ,Glycoprotein ,Signal Transduction - Abstract
Although the hepatitis C virus (HCV) is an enveloped virus, naked nucleocapsids have been reported in the serum of infected patients, and most recently novel HCV subgenomes with deletions of the envelope proteins have been identified. However the significance of these findings remains unclear. In this study, we used the baculovirus expression system to generate recombinant HCV capsid-like particles, and investigated their possible interactions with cells. We show that expression of HCV core in insect cells can sufficiently direct the formation of capsid-like particles in the absence of the HCV envelope glycoproteins and of the 5′ untranslated region. By confocal microscopy analysis, we provide evidence that the naked capsid-like particles could be uptaken by human hepatoma cells. Moreover, our findings suggest that they have the potential to produce cell-signaling effects.
- Published
- 2007
48. Expression of immunoreactive forms of the hepatitis C NS5A protein in E. coli and their use for diagnostic assays
- Author
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Penelope Mavromara, A. Hadziyannis, Maria Kalamvoki, A. Varaklioti, Urania Georgopoulou, S. Hadziyannis, and Vivi Miriagou
- Subjects
Adult ,Male ,Adolescent ,viruses ,Hepatitis C virus ,Immunoblotting ,Enzyme-Linked Immunosorbent Assay ,Viral Nonstructural Proteins ,medicine.disease_cause ,Antibodies, Viral ,Virus ,Epitope ,Serology ,Antigen ,Virology ,medicine ,Escherichia coli ,Humans ,Serologic Tests ,NS5A ,Aged ,biology ,virus diseases ,General Medicine ,biochemical phenomena, metabolism, and nutrition ,Middle Aged ,Fusion protein ,Hepatitis C ,digestive system diseases ,Recombinant Proteins ,biology.protein ,Female ,Antibody - Abstract
In this study different forms of the hepatitis C virus (HCV) NS5A protein, including a nearly full-length, an amino-terminal and a carboxy-terminal truncated form were produced in E. coli as fusion proteins with the MBP or the GST protein. The chimeric proteins were tested for their reactivity with sera from HCV infected patients by immunoblot and ELISA assays. A panel of 110 sera specimens, including 39 HCV-positive sera, 27 sera from patients with non-HCV-associated liver disease and 44 healthy individuals were analyzed for the presence of antibodies to NS5A. Twenty four (61 %) out of the 39 HCV positive sera, showed reactivity against the nearly full length NS5A, 21 (54 %) against the amino-terminal part of NS5A and 20 (51 %) against the carboxy-terminal part of the NS5A protein in immunoblot assays, suggesting that immunoreactive epitopes are present both at the carboxy- and the amino- terminal part of the protein. None of the 71 HCV-negative serum samples showed any reactivity against the NS5A antigens. With the exception of one patient, similar data were obtained with an ELISA assay based on the use of the nearly full-length NS5A antigen. The data indicate that new forms of NS5A may be potentially valuable antigens for the development of serological assays for HCV.
- Published
- 2002
49. Alternate translation occurs within the core coding region of the hepatitis C viral genome
- Author
-
Niki Vassilaki, Penelope Mavromara, Agoritsa Varaklioti, and Urania Georgopoulou
- Subjects
Transcription, Genetic ,Molecular Sequence Data ,Genome, Viral ,Hepacivirus ,Biology ,Biochemistry ,Ribosomal frameshift ,Epitope ,law.invention ,Cell Line ,Open Reading Frames ,law ,Coding region ,Animals ,Humans ,Luciferase ,Luciferases ,Molecular Biology ,Base Sequence ,Translation (biology) ,Cell Biology ,Virology ,Molecular biology ,Fusion protein ,Open reading frame ,Protein Biosynthesis ,Recombinant DNA ,Mutagenesis, Site-Directed ,Electrophoresis, Polyacrylamide Gel ,Rabbits - Abstract
The majority of hepatitis C virus (HCV) isolates contain an open reading frame (ORF) overlapping with the core coding sequences in the +1 frame, which was assumed to be untranslated. We present evidence supporting the expression of this ORF (designated core+1 ORF) via novel translation mechanisms. First, fusion of the luciferase gene with the HCV-1 core+1 ORF followed by in vitro translation resulted in the synthesis of a chimeric protein (core+1-luciferase) that exhibited approximately 54% luciferase activity relative to the positive control (core-luciferase). Second, antisera raised against two different synthetic core+1 peptides recognized the previously identified p16 (but not p21) core protein band expressed from HCV-1, indicating the presence of epitopes from the core+1 ORF within the p16 protein. Third, HCV-positive sera specifically recognized lysates of Escherichia coli cells expressing recombinant core+1 protein, suggesting the presence of anti-core+1 antibodies in HCV-infected patients. Finally, luciferase tagging experiments designed to assess for -1 frameshifting combined with site-directed mutagenesis experiments supported the presence of +1/-1 ribosomal frameshift translation mechanisms within the core coding region. In conclusion, our data provide evidence for novel translation mechanisms within the core coding region and demonstrate the expression of the core+1 ORF, at least for some HCV isolates.
- Published
- 2002
50. Mutational analysis of two unstructured domains of the 5' untranslated region of HCV RNA
- Author
-
M. Serwe, L. Psaridi, A. Varaklioti, Penelope Mavromara, Urania Georgopoulou, W.H. Caselmann, and Athanassios Kakkanas
- Subjects
Genetics ,Five prime untranslated region ,Base Sequence ,Molecular Sequence Data ,Biophysics ,Nucleic acid sequence ,RNA ,Translation (biology) ,Cell Biology ,Hepacivirus ,Biology ,Pyrimidine Nucleosides ,Biochemistry ,Internal ribosome entry site ,Structure-Activity Relationship ,Eukaryotic translation ,Mutagenesis ,Eukaryotic initiation factor ,Nucleic Acid Conformation ,RNA, Viral ,Sequence motif ,5' Untranslated Regions ,Peptide Chain Initiation, Translational ,Molecular Biology - Abstract
Translation initiation of hepatitis C virus (HCV) RNA genome is mediated by an internal ribosome entry site (IRES). To further comprehend the mechanism of translation initiation of HCV RNA, we investigated the importance of two unstructured, highly conserved, single-stranded pyrimidine-rich sequences located immediately upstream of domain II (nt38-43) and between domains II and III (nt120-125) in HCV translation. A series of defined mutations was engineered and introduced into a dicistronic vector in order to assess their impact on in vitro translation. Our data indicated that nucleotide sequence 38-43 is not essential for HCV translation. In contrast, mutational analysis of the second sequence motif (nt 120-125) suggested that this region was important for maintaining the proper structure within the IRES element although the primary sequence itself was not critical for IRES function. More importantly, it appeared that mutations which allowed juxtaposition of neighboring bases (nt112-119) to the pseudoknot structure, were detrimental to translation initiation.
- Published
- 1999
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