77 results on '"ARMUTLU, Ayşe"'
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2. Serous Cystic Neoplasms, Macrocystic (Oligocystic) Type
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Armutlu, Ayşe, Adsay, N. Volkan, van Krieken, J. H. J. M., Series Editor, Esposito, Irene, editor, and Karamitopoulou-Diamantis, Eva, editor
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- 2022
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3. Quantitative Phosphoproteomics Analysis Uncovers PAK2- and CDK1-Mediated Malignant Signaling Pathways in Clear Cell Renal Cell Carcinoma
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Senturk, Aydanur, Sahin, Ayse T., Armutlu, Ayse, Kiremit, Murat Can, Acar, Omer, Erdem, Selcuk, Bagbudar, Sidar, Esen, Tarik, and Ozlu, Nurhan
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- 2022
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4. Infiltration pattern predicts metastasis and progression better than the T-stage and grade in pancreatic neuroendocrine tumors: a proposal for a novel infiltration-based morphologic grading
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Taskin, Orhun Cig, Reid, Michelle D., Bagci, Pelin, Balci, Serdar, Armutlu, Ayse, Demirtas, Deniz, Pehlivanoglu, Burcin, Saka, Burcu, Memis, Bahar, Bozkurtlar, Emine, Leblebici, Can Berk, Birceanu, Adelina, Xue, Yue, Erkan, Mert, Kapran, Yersu, Baygul, Arzu, Sokmensuer, Cenk, Scarpa, Aldo, Luchini, Claudio, Basturk, Olca, and Adsay, Volkan
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- 2022
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5. Tumor Genomic Profiling to Determine Tissue Origin of Cancers of Unknown Primary: A Single Institute Experience With its Utility and Impact on Patient Management
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Saeed, Omer A.M., Armutlu, Ayşe, Cheng, Liang, Longe, Harold O., and Saxena, Romil
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- 2022
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6. Serous Cystic Neoplasms, Macrocystic (Oligocystic) Type
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Armutlu, Ayşe, primary and Adsay, N. Volkan, additional
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- 2022
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7. 68Ga-PSMA-11 Positron Emission Tomography/Computed Tomography for Primary Lymph Node Staging Before Radical Prostatectomy: Central Review of Imaging and Comparison with Histopathology of Extended Lymphadenectomy
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Esen, Tarik, Falay, Okan, Tarim, Kayhan, Armutlu, Ayse, Koseoglu, Ersin, Kilic, Mert, Seymen, Hülya, Sarikaya, Ahmet Furkan, Kiremit, Murat Can, Balbay, Mevlana Derya, Canda, Abdullah Erdem, Baydar, Dilek Ertoy, Kordan, Yakup, Demirkol, Mehmet Onur, and Tilki, Derya
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- 2021
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8. Tumor border pattern and size help predict lymph node status in papillary microcarcinoma: A clinicopathologic study
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Taşkın, Orhun Çığ, Armutlu, Ayşe, Ağcaoğlu, Orhan, Peker, Önder, Terzioğlu, Tarık, Demirkol, Mehmet Onur, Tezelman, Serdar, and Kapran, Yersu
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- 2020
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9. Clinicopathologic and immunohistochemical characteristics of upper gastrointestinal leiomyomas harboring interstitial cells of Cajal: A potential mimicker of gastrointestinal stromal tumor
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Taşkın, Orhun Çığ, Armutlu, Ayşe, Adsay, Volkan, Aslan, Fatih, and Kapran, Yersu
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- 2020
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10. Primary Peritoneal Mesothelioma With Clear Cell Morphology Presenting With Multiple Liver Masses: Report of a Case With a Unique VHL Y98fs*24 Mutation and Indolent Clinical Course
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Saeed, Omer A. M., Armutlu, Ayşe, Zhang, Xin, and Saxena, Romil
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- 2020
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11. Dil üzerinde dev siğil
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ÖZCANLI, Adil, primary, HASBAL, Nuri Barış, additional, ARMUTLU, Ayşe, additional, ALTUNTAŞ, Ozan, additional, and VURAL, Seçil, additional
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- 2023
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12. Giant wart on the tongue
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ÖZCANLI, Adil, HASBAL, Nuri Barış, ARMUTLU, Ayşe, ALTUNTAŞ, Ozan, and VURAL, Seçil
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Oral mucosa ,Human Papillomavirus ,Verruca vulgaris ,Wart ,Verrucous carcinoma ,oral mukoza ,insan papillomavirusu ,verruka vulgaris ,siğil ,verrüköz karsinom ,Medicine ,Tıp - Abstract
Verruka vulgaris, insan papilloma virüsünün (HPV) neden olduğu benign bir enfeksiyondur. Lezyonlar öncelikle kutanöz yüzeylerde görülür; bununla birlikte, mukozal tutulum daha az sıklıkta görülmektedir. Tipik görünüm, boyut ve sayı olarak değişkenlik gösteren asemptomatik papüllerdir. Ayırıcı tanı, iyi huylu ve kötü huylu çeşitli durumların bir listesini içerir. Bu yazıda, dahiliye fizik muayenesinde tesadüfen dilde karnabahar benzeri asemptomatik kitle saptanan 65 yaşında bir erkek hasta sunulmaktadır. Eksizyonel biyopsi verruka vulgaris olarak sonuçlandı ve takiplerinde yeni lezyon izlenmedi., Verruca vulgaris is a benign infection caused by the human papillomavirus (HPV). The lesions appear primarily on the cutaneous surfaces; however, mucosal involvement is less frequent. The typical presentation is asymptomatic papules varying in size and number. The differential diagnosis includes a diverse list of benign and malignant conditions. Herein, we present a 65-year-old male patient with an asymptomatic cauliflower-like mass on the tongue incidentally observed during internal medicine physical examination. The excisional biopsy revealed verruca vulgaris, and no new lesions were detected in the follow-up.
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- 2023
13. Quantitative phosphoproteomics analysis uncovers PAK2 and CDK1 mediated malignant signaling pathways in clear cell Renal Cell Carcinoma
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Şentürk, Aydanur; Şahin, Ayşe Tuğçe; Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Kiremit, Murat Can (ORCID 0000-0002-6676-9205 & YÖK ID 222920); Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530); Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536); Özlü, Nurhan (ORCID 0000-0002-5157-8780 & YÖK ID 105301), Erdem, Selçuk; Bağbudar, Sidar, Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Graduate School of Sciences and Engineering; College of Sciences; School of Medicine, Department of Molecular Biology and Genetics, Şentürk, Aydanur; Şahin, Ayşe Tuğçe; Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Kiremit, Murat Can (ORCID 0000-0002-6676-9205 & YÖK ID 222920); Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530); Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536); Özlü, Nurhan (ORCID 0000-0002-5157-8780 & YÖK ID 105301), Erdem, Selçuk; Bağbudar, Sidar, Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Graduate School of Sciences and Engineering; College of Sciences; School of Medicine, and Department of Molecular Biology and Genetics
- Abstract
Clear cell Renal Cell Carcinoma (ccRCC) is among the 10 most common cancers in both men and women and causes more than 140,000 deaths worldwide every year. In order to elucidate the underlying molecular mechanisms orchestrated by phosphorylation modifications, we per-formed a comprehensive quantitative phosphoproteomics characterization of ccRCC tumor and normal adjacent tissues. Here, we identified 16,253 phosphopeptides, of which more than 9000 were singly quantified. Our in-depth analysis revealed 600 phosphopeptides to be significantly differentially regulated between tumor and normal tissues. Moreover, our data revealed that significantly up -regu-lated phosphoproteins are associated with protein syn-thesis and cytoskeletal re-organization which suggests proliferative and migratory behavior of renal tumors. This is supported by a mesenchymal profile of ccRCC phos-phorylation events. Our rigorous characterization of the renal phosphoproteome also suggests that both epidermal growth factor receptor and vascular endothelial growth factor receptor are important mediators of phos-pho signaling in RCC pathogenesis. Furthermore, we determined the kinases p21-activated kinase 2, cyclin-dependent kinase 1 and c-Jun N-terminal kinase 1 to be master kinases that are responsible for phosphorylation of many substrates associated with cell proliferation, inflammation and migration. Moreover, high expression of p21-activated kinase 2 is associated with worse survival outcome of ccRCC patients. These master kinases are targetable by inhibitory drugs such as fostamatinib, min-ocycline, tamoxifen and bosutinib which can serve as novel therapeutic agents for ccRCC treatment., NO acknowledges the Royal Society Newton Advanced Fellowship (NA170389) .
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- 2022
14. Hepatocellular carcinomas with granulomatous inflammation in tumor stroma: clinicopathologic characteristics
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Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Saka, B.; Özden, F.; Ertuğrul, G., School of Medicine, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Saka, B.; Özden, F.; Ertuğrul, G., and School of Medicine
- Abstract
Objective: to determine the frequency of granulomatous inflammation within hepatocellular carcinoma (HCC) and its clinicopathologic associations. Material and method: fifty-eight HCCs (51 explants, 3 lobectomies, and 4 segmentectomies) were reviewed. Results: five (8.6%) cases (F/M=1/4, mean age: 63.6) were identified with granulomas.1/5 had history of neoadjuvant therapy. 4/5 patients presented with early stage (pT1/2). All were well-differentiated (Grade1-2/4). The mean number of tumor foci was 3.6, with a median size of 2.2 cm. All of them had advanced fibrosis. No difference was identified from cases without granulomas (n=53) in terms of prognosis and aforementioned parameters (p> 0.05). Granulomas were mainly concentrated in peripheral parts of the tumors. One case with nodule-in-nodule formation had granulomas lined along the border of the inner nodule. In 2 cases, granulomas were identified in steatohepatitic areas, while another had clear cell change. Only 1 had necrotizing granulomas, none with acid resistant bacilli. Two cases revealed concomitant granulomas in the adjacent liver parenchyma in addition to the tumor stroma. Except for one with a history of tuberculosis, none of the cases had a granulomatous disease.Conclusion: this is the largest case series of HCCs with granulomas by far. Our data revealed neither clinicopathologic and prognostic difference nor definite etiology related to granulomas. Yet, association with steatotic and clear tumor cells suggests the role of cytoplasmic content, while distribution of granulomas points to host immune response., NA
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- 2022
15. sj-docx-1-ijs-10.1177_10668969211022708 - Supplemental material for Metastatic Liver Tumors in Surgical Pathology: Impact of Contemporary Diagnostic and Therapeutic Paradigms in a Tertiary Care Center
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Armutlu, Ayşe, Saeed, Omer, and Saxena, Romil
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FOS: Clinical medicine ,education ,110323 Surgery ,111599 Pharmacology and Pharmaceutical Sciences not elsewhere classified - Abstract
Supplemental material, sj-docx-1-ijs-10.1177_10668969211022708 for Metastatic Liver Tumors in Surgical Pathology: Impact of Contemporary Diagnostic and Therapeutic Paradigms in a Tertiary Care Center by Ayşe Armutlu, Omer Saeed and Romil Saxena in International Journal of Surgical Pathology
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- 2022
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16. Metastatic Liver Tumors in Surgical Pathology: Impact of Contemporary Diagnostic and Therapeutic Paradigms in a Tertiary Care Center
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Armutlu, Ayşe, primary, Saeed, Omer, additional, and Saxena, Romil, additional
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- 2021
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17. Histopathologic infiltration pattern predicts metastasis and progression better than pT-stage and grade in well-differentiated pancreatic neuroendocrine tumors: A proposal for an infiltration-based morphologic grading system
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Taşkın, Orhun, Reid, Michelle, Bağcı Çulçi, Pelin, Balcı, Serdar, Armutlu, Ayşe, Demirtaş, Deniz, Pehlivanoğlu, Burçin, Saka, Burcu, Memiş, Bahar, Bozkurtlar, Emine, Leblebici, Can Berk, Corobea, Adelina Birceanu, Xue, Yue, Erkan, Mert, Kapran, Yersu, Sökmensüer, Cenk, Scarpa, Aldo, Luchini, Claudio, Baştürk, Olca, and Adsay, Nazmi Volkan
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Grade in Well-Differentiated Pancreatic Neuroendocrine Tumors ,pT-Stage ,Infiltration Pattern Predicts - Published
- 2021
18. Will the real 'hepatobiliary cystadenocarcinoma' please stand up? True malignancy is exceedingly rare in cystic liver lesions; implications for pathologic evaluation and pre-operative decision making
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Armutlu, Ayşe, Quigley, Brian, Choi, Hegyong, Baştürk, Olca, Akkaş, Gizem, Pehlivanoğlu, Burçin, Memiş, Bahar, Jang, Keetaek, Erkan, Mert, Erkan, Burcu, Balcı, Serdar, Saka, Burcu, Bağcı Çulçi, Pelin, Farris, Alton Brad, Kooby, David, Martin, Diego, Kalb, Bobby, Maithel, Shishir, Sarmiento, Juan, Reid, Michelle, and Adsay, Nazmi Volkan
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stomatognathic diseases ,parasitic diseases ,Hepatobiliary Cystadenocarcinoma ,PreOperative Decision Making ,Pre-Operative Decision Making ,Pathologic Evaluation - Abstract
Background: Concern for hepatic cysts being “hepatobiliary cystadenocarcinoma” along with the allegedly high frequency of its occurrence in the literature (up to 30% of the hepatic cysts) remains a major driver for the management of cystic lesions in this organ.
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- 2021
19. Metastatic liver tumors in surgical pathology: impact of contemporary diagnostic and therapeutic paradigms in a tertiary care center
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Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Saeed, Omer; Saxena, Romil, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), and Saeed, Omer; Saxena, Romil
- Abstract
We analyzed metastatic liver tumors received in the department of pathology in a tertiary care center over a 3-year period. There were 509 metastatic liver tumors; counterintuitively, there were as many resections (235 cases) as biopsies (274 cases). This unexpected finding reflects contemporaneous organ-specific paradigms for diagnosis and management of metastatic liver disease in oncologic practice, and the association of our practice with a National Cancer Institute-designated comprehensive cancer center with expertise and specialization in liver surgery. We receive a large number of resections for metastatic liver tumors because metastasectomy from a variety of primary tumors is associated with improved overall, and in many instances, disease-free, long-term survival. Metastatic colorectal carcinomas, metastatic neuroendocrine tumors, and metastatic gastrointestinal stromal tumors constituted 78% of resections because the largest body of literature and cumulative experience exists for these lesions. In contrast, breast carcinomas and pancreatic carcinomas, which are the next common metastatic liver tumors were biopsied but rarely resected, because metastasectomy is not the standard of care for these tumors. Immunohistochemistry was performed in less than a quarter of the total number of cases (23%), because the primary tumor site was known in the vast majority of cases. Of the 42 cases with unknown primary tumor, it was elucidated in 50% of the cases by immunohistochemical and clinical work-up. Of the cases with known primary tumor, immunohistochemistry was performed mostly in metastatic breast, colon, and lung carcinomas. In these cases, biomarker analyses provided additional information relevant to clinical management.
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- 2021
20. Can remote ischemic preconditioning counteract the renal functional deterioration attributable to partial nephrectomy under warm ischemia? results of an animal study
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Kanbay, Mehmet (ORCID 0000-0002-1297-0675 & YÖK ID 110580); Baydar, Dilek Ertoy (ORCID 0000-0003-0784-8605 & YÖK ID 8025); Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530); Taşkın, Ali Cihan (ORCID 0000-0003-3196-821X & YÖK ID 291296); Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536); Armutlu, Ayşe; İncir, Said; Ertuğlu, Lale Aslıhan; Özel, Melis, Uhlig, Annemarie; Mut, Tuna Till, Kanbay, Mehmet (ORCID 0000-0002-1297-0675 & YÖK ID 110580); Baydar, Dilek Ertoy (ORCID 0000-0003-0784-8605 & YÖK ID 8025); Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530); Taşkın, Ali Cihan (ORCID 0000-0003-3196-821X & YÖK ID 291296); Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536); Armutlu, Ayşe; İncir, Said; Ertuğlu, Lale Aslıhan; Özel, Melis, and Uhlig, Annemarie; Mut, Tuna Till
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Background: to investigate if remote ischemic preconditioning (RIPC) can offer any renoprotective value by counteracting the deleterious effect of partial nephrectomy (PN) under warm ischemia on renal function. Methods: four groups, each with 5 Wistar albino rats, were constructed; RIPC + PN, PN, RIPC and sham. Right nephrectomy was performed to constitute a solitary kidney model. RIPC denoted sequential clamping/declamping of the femoral artery/vein complex. PN was performed under warm-ischemia following RIPC. Blood samples were collected on multiple occasions until euthanasia on day 7. Immunoassays were conducted to measure the serum and tissues levels of kidney injury markers. Kidneys were examined histologically and morphometric analyzes were performed using digital scanning. Results: IL-33 levels did not differ significantly between the groups. Serum levels of KIM-1, NGAL, and aldose reductase in RIPC + PN, PN and RIPC groups were significantly lower than that of sham group. Tissue biomarker levels were similar across groups. The observed trend in mean necrosis area of PN group was higher than that of RIPC + PN group (p > 0.05). The transitional zone between necrosis and healthy tissue showed a trend towards increasing width in the rats subjected to RIPC before PN vs. those who underwent PN without RIPC (p > 0.05). Conclusion: RIPC failed to counteract the renal functional consequences of PN under warm ischemia in a solitary kidney animal model. The supportive but marginal histological findings in favor of RIPC's renoprotective potential were not supplemented with the changes in serum and tissue biomarker levels.
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- 2021
21. A novel insight into the pathophysiology of autoimmune hepatitis: an immune activator mutation in the FLT3 receptor
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Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Yüksel, Muhammet; Nazmi, Farinaz; Arıkan, Çiğdem (ORCID 0000-0002-0794-2741 & YÖK ID 240198), Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Koç University Hospital, School of Medicine, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Yüksel, Muhammet; Nazmi, Farinaz; Arıkan, Çiğdem (ORCID 0000-0002-0794-2741 & YÖK ID 240198), Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Koç University Hospital, and School of Medicine
- Abstract
Autoimmune hepatitis (AIH) is a chronic progressive autoimmune liver disease characterized by hypergammaglobulinemia, interface hepatitis, a female preponderance, and the presence of autoantibodies in most patients. The presence of HLA-DR3/DR4 and functional impairment in regulatory T cells are associated with AIH. However, AIH is a multifactorial complex disease. This report is a description of a case of seronegative AIH in a girl with chronic hepatitis, a high immunoglobulin E (IgE) level, perforating nodular dermatitis, and sheer eosinophilia. To re-evaluate the diagnosis, whole exon sequencing was performed. It was determined that the patient had ancestral haplotype A1-B8-DR3, which is associated with autoimmunity. Importantly, it was also noted that an undocumented point mutation (Ala627Thr) of the FMS-like tyrosine 3 kinase (FLT3) receptor was present. This FLT3 receptor gain-of-function mutation is associated with the activation of the mechanistic target of rapamycin (mTOR), and dendritic cell activation. In addition, a loss-of-function mutation in the melanocortin-3 receptor gene, which inhibits interleukin 4, was detected. The constellation of these immune deregulatory factors may have propagated auto-aggression of the liver, causing chronic hepatitis with AIH features. The findings of seronegativity with eosinophilia and a high IgE level led us to hypothesize that the pathognomonic mechanism in this case was unlike that of classic AIH pathophysiology. Since mTOR is constitutively activated, mTOR inhibitors may be a useful option to treat AIH and dermatitis., NA
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- 2021
22. Quantitative proteomics identifies secreted diagnostic biomarkers as well as tumor-dependent prognostic targets for clear cell Renal Cell Carcinoma
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Özlü, Nurhan (ORCID 0000-0002-5157-8780 & YÖK ID 105301); Şenturk, Aydanur; Şahin, Ayşe Tuğçe; Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Kiremit, Murat Can; Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530); Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536); Tunçbağ, Nurcan (ORCID 0000-0002-0389-9459 & YÖK ID 245513), Erdem, Selçuk; Bağbudar, Sidar, College of Sciences; Graduate School of Sciences and Engineering; Graduate School of Health Sciences; School of Medicine; College of Engineering, Department of Molecular Biology and Genetics; Department of Chemical and Biological Engineering, Özlü, Nurhan (ORCID 0000-0002-5157-8780 & YÖK ID 105301); Şenturk, Aydanur; Şahin, Ayşe Tuğçe; Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Kiremit, Murat Can; Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530); Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536); Tunçbağ, Nurcan (ORCID 0000-0002-0389-9459 & YÖK ID 245513), Erdem, Selçuk; Bağbudar, Sidar, College of Sciences; Graduate School of Sciences and Engineering; Graduate School of Health Sciences; School of Medicine; College of Engineering, and Department of Molecular Biology and Genetics; Department of Chemical and Biological Engineering
- Abstract
Clear cell renal cell carcinoma (ccRCC) is the third most common and most malignant urological cancer, with a 5-year survival rate of 10% for patients with advanced tumors. Here, we identified 10,160 unique proteins by in-depth quantitative proteomics, of which 955 proteins were significantly regulated between tumor and normal adjacent tissues. We verified four putatively secreted biomarker candidates, namely, PLOD2, FERMT3, SPARC, and SIRPa, as highly expressed proteins that are not affected by intratumor and intertumor heterogeneity. Moreover, SPARC displayed a significant increase in urine samples of patients with ccRCC, making it a promising marker for the detection of the disease in body fluids. Furthermore, based on molecular expression profiles, we propose a biomarker panel for the robust classification of ccRCC tumors into two main clusters, which significantly differed in patient outcome with an almost three times higher risk of death for cluster 1 tumors compared with cluster 2 tumors. Moreover, among the most significant dustering proteins, 13 were targets of repurposed inhibitory FDA-approved drugs. Our rigorous proteomics approach identified promising diagnostic and tumor-discriminative biomarker candidates which can serve as therapeutic targets for the treatment of ccRCC. Implications: Our in-depth quantitative proteomics analysis of ccRCC tissues identifies the putatively secreted protein SPARC as a promising urine biomarker and reveals two molecular tumor phenotypes., NA
- Published
- 2021
23. The role of endobronchial ultrasonography elastography for predicting malignancy
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Çağlayan, Benan Niku (ORCID 0000-0002-6131-157X & YÖK ID 230719); İliaz, Sinem; Bulutay, Pınar (ORCID 0000-0001-5497-1513 & YÖK ID 133565); Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Uzel, Işıl; Öztürk, Ayşe Bilge (ORCID 0000-0003-0166-424X & YÖK ID 147629) and Çağlayan, Benan Niku (ORCID 0000-0002-6131-157X & YÖK ID 230719); İliaz, Sinem; Bulutay, Pınar (ORCID 0000-0001-5497-1513 & YÖK ID 133565); Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Uzel, Işıl; Öztürk, Ayşe Bilge (ORCID 0000-0003-0166-424X & YÖK ID 147629)
- Abstract
Background: this study aims to investigate the role of endobronchial ultrasonography elastography in predicting malignancy. Methods: between January 2016 and December 2016, a total of 221 lymph nodes were biopsied using the endobronchial ultrasonography-guided transbronchial needle aspiration from 119 consecutive patients (69 males, 50 females; mean age 63.2±12.4 years; range, 16 to 86 years) were included. Lymph nodes were scored by elastography according to their colors in four categories before the procedure. The strain ratio was calculated based on the region of interest after three measurements. Results: of the patients, 93 were diagnosed with a malignancy through endobronchial ultrasonography-guided transbronchial needle aspiration biopsy. The mean lymph node score of benign versus malignant lesions was 2.2±1.0 and 3.2±1, respectively (p<0.001). There was a positive correlation between the lymph node scores and lymph node diameter, strain ratio, and fluorodeoxyglucose uptake value (p<0.01). With a cut-off value of ?3 of lymph node scoring, the sensitivity for malignancy was 79% and specificity was 60%. The mean strain ratio for malignant and benign lymph nodes was 22.2±30.1 and 5.2±1.7, respectively (p<0.001). With a cut-off value of ?2.47 of strain ratio, the sensitivity for malignancy was 75% and specificity was 65%. The combined use of positron emission tomography and lymph node score or strain ratio yielded 80.4% and 61.2% sensitivity and 80% and 70.3% specificity for malignancy, respectively. Conclusion: endobronchial ultrasonography elastography is useful in predicting malignancy of the lymph nodes. When combined with positron emission tomography, specificity and positive predictive value for malignancy increase. / Amaç: bu çalışmada endobronşiyal ultrasonografi elastografinin maligniteyi öngörmedeki rolü araştırıldı. Çalışma planı: Ocak 2016 - Aralık 2016 tarihleri arasında, endobronşiyal ultrasonografi eşliğinde transbronşiyal iğne aspirasyon biyopsisi
- Published
- 2020
24. The role of endobronchial ultrasonography elastography for predicting malignancy
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Çağlayan, Benan Niku (ORCID 0000-0002-6131-157X & YÖK ID 230719); İliaz, Sinem (ORCID & YÖK ID 168584); Bulutay, Pınar (ORCID 0000-0001-5497-1513 & YÖK ID 133565); Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Uzel, Işıl; Öztürk, Ayşe Bilge (ORCID 0000-0003-0166-424X & YÖK ID 147629), Koç University Hospital, School of Medicine, Çağlayan, Benan Niku (ORCID 0000-0002-6131-157X & YÖK ID 230719); İliaz, Sinem (ORCID & YÖK ID 168584); Bulutay, Pınar (ORCID 0000-0001-5497-1513 & YÖK ID 133565); Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567); Uzel, Işıl; Öztürk, Ayşe Bilge (ORCID 0000-0003-0166-424X & YÖK ID 147629), Koç University Hospital, and School of Medicine
- Abstract
Background: this study aims to investigate the role of endobronchial ultrasonography elastography in predicting malignancy. Methods: between January 2016 and December 2016, a total of 221 lymph nodes were biopsied using the endobronchial ultrasonography-guided transbronchial needle aspiration from 119 consecutive patients (69 males, 50 females; mean age 63.2±12.4 years; range, 16 to 86 years) were included. Lymph nodes were scored by elastography according to their colors in four categories before the procedure. The strain ratio was calculated based on the region of interest after three measurements. Results: of the patients, 93 were diagnosed with a malignancy through endobronchial ultrasonography-guided transbronchial needle aspiration biopsy. The mean lymph node score of benign versus malignant lesions was 2.2±1.0 and 3.2±1, respectively (p<0.001). There was a positive correlation between the lymph node scores and lymph node diameter, strain ratio, and fluorodeoxyglucose uptake value (p<0.01). With a cut-off value of ?3 of lymph node scoring, the sensitivity for malignancy was 79% and specificity was 60%. The mean strain ratio for malignant and benign lymph nodes was 22.2±30.1 and 5.2±1.7, respectively (p<0.001). With a cut-off value of ?2.47 of strain ratio, the sensitivity for malignancy was 75% and specificity was 65%. The combined use of positron emission tomography and lymph node score or strain ratio yielded 80.4% and 61.2% sensitivity and 80% and 70.3% specificity for malignancy, respectively. Conclusion: endobronchial ultrasonography elastography is useful in predicting malignancy of the lymph nodes. When combined with positron emission tomography, specificity and positive predictive value for malignancy increase. / Amaç: bu çalışmada endobronşiyal ultrasonografi elastografinin maligniteyi öngörmedeki rolü araştırıldı. Çalışma planı: Ocak 2016 - Aralık 2016 tarihleri arasında, endobronşiyal ultrasonografi eşliğinde transbronşiyal iğne aspirasyon biyopsisi, NA
- Published
- 2020
25. Löwenstein-Buschke: clinicopathologic analysis of 78 cases of large and giant condyloma acuminata of the anus
- Author
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Taşkın, Orhun Çığ (ORCID 0000-0002-6668-3006 & YÖK ID 166686); Armutlu, Ayşe; Adsay, Volkan (ORCID 0000-0002-1308-3701 & YÖK ID286248), Pehlivanoğlu, Burçin; Reid, Michelle D.; Friedman, Theador; Lee, Michael; Tadros, Talaat S.; Bandyopadhyay, Sudeshna; Akinfolarin, Josephine; Baştürk, Olca, Koç University Hospital, Taşkın, Orhun Çığ (ORCID 0000-0002-6668-3006 & YÖK ID 166686); Armutlu, Ayşe; Adsay, Volkan (ORCID 0000-0002-1308-3701 & YÖK ID286248), Pehlivanoğlu, Burçin; Reid, Michelle D.; Friedman, Theador; Lee, Michael; Tadros, Talaat S.; Bandyopadhyay, Sudeshna; Akinfolarin, Josephine; Baştürk, Olca, and Koç University Hospital
- Abstract
Objective: the nature and clinicopathologic associations of Löwenstein-Buschke disease are unclear. Materials and methods: 78 anal condylomatous lesions (≥2 cm) were analyzed. Cases were classified based on size as "medium-large"(2-5 cm, n=59), "large" (5-10 cm, n=13) and "giant" ( > 10 cm, n=6). Results: patients were predominantly males (male/female=70/8). The mean age was 38 years (range:20-66). Two distinct lining types were recognized: 1) Epidermal type, typically lacking overt koilocytotic change, with associated invasive carcinoma in 8%; 2) Mucosal type, often manifesting koilocytotic change, with associated invasive carcinoma in 21%. Three types of high-grade dysplasia were discerned: 1) Basaloid, 8/9 showing high-grade dysplasia/carcinoma in-situ but non-invasive lesions; 2) Keratinizing, innocuous-appearing, but 5/6 was associated with invasion; 3) Giant cell, showing scattered individual bizarre cells, with 3/5 showing invasive carcinoma. Overall, invasion was found in 14% of the cases. The bulbous, broad-based destructive pattern characterizing verrucous carcinomas of the upper aerodigestive tract was not observed. A statistically significant trend existed between the incidence of invasion and size: 8.5% for medium-large, 23% for large, and 50% for giant (p=0.02). There was no discernable trend in the depth of invasion relative to condyloma size. Conclusions: our findings suggest that Löwenstein-Buschke lesions are mega versions of conventional condyloma. Being verrucoid, large and minimally invasive, they can be conceptually regarded as a form of verrucous carcinoma, but they do not display the histologic characteristics of verrucous carcinoma defined in the aerodigestive tract. They exhibit two types of linings: the mucosal type that often shows koilocytotic changes, and the epidermal type that can be difficult to recognize in biopsies. These lesions may be associated with invasive carcinoma, albeit limited in amount., NA
- Published
- 2020
26. Three consequent pediatric liver transplant deaths in the COVID-19 era
- Author
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Imam, Ashraf; Karataş, Cihan; Imam, R.; Armutlu, Ayşe; Meciti, N.; Karakaya, Afak Durur; Kalayoğlu, Münci; Kanmaz, Turan, Koç University Hospital, Imam, Ashraf; Karataş, Cihan; Imam, R.; Armutlu, Ayşe; Meciti, N.; Karakaya, Afak Durur; Kalayoğlu, Münci; Kanmaz, Turan, and Koç University Hospital
- Abstract
The effect of COVID-19 on the transplant recipients is not well-established. Many reports underestimate the effect of COVID-19 on the immunosuppressed population. Herein, we report on 3 pediatric liver transplant recipients who were transplanted at our center between February 11 and March 10, 2020-during the COVID-19 pandemic era. The 3 patients aged between 5 and 10 months, had a rapid and aggressive respiratory deterioration that necessitated mechanical ventilation and extracorporeal life support; and eventually died. The clinical and pathological pictures likely represent COVID-19 pneumonia. Chest x-rays showed progressive infiltrates. Lung autopsies showed diffuse alveolar damage in two cases. We concluded that COVID-19 is very likely to have catastrophic effects on transplant recipients., NA
- Published
- 2020
27. Desmoplastic small round cell tumor of the kidney: a case report
- Author
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Baydar, Dilek Ertoy (ORCID 0000-0003-0784-8605 & YÖK ID 8025); Armutlu, Ayşe, Aydın, Oğuz; Dağdemir, Ayhan; Yakupoğlu, Yarkın Kamil, School of Medicine, Baydar, Dilek Ertoy (ORCID 0000-0003-0784-8605 & YÖK ID 8025); Armutlu, Ayşe, Aydın, Oğuz; Dağdemir, Ayhan; Yakupoğlu, Yarkın Kamil, and School of Medicine
- Abstract
Background: desmoplastic small round cell tumor (DSRCT) is a rare, aggressive neoplasm seen in children and young adults, usually manifested by involvement of abdominal serosa. Here, we present an unusual case of primary DSRCT of kidney. Case presentation: the patient was an 8-year-old girl with a large renal mass which was confused with primitive neuroectodermal tumor (PNET) in the needle biopsy. The tumor had a variegated histology revealing frequent pseudo-rosette formations, pseudopapillary architecture, rhabdoid, clear or pleomorphic cells in addition to typical small round cell morphology and desmoplasia. It showed immunohistochemical features of DSRCT, and EWSR1 re-arrangement. Conclusions: proffering this diagnosis is particularly difficult for tumors of viscera because of the incognizance of the entity in these locations. Moreover, DSRCT is a great mimicker and may get easily confused with more common kidney malignancies of childhood such as Wilms tumor, PNET/EWS, rhabdoid tumor, clear cell sarcoma, and other small round cell tumors as well as renal cell carcinomas. The distinction is critical as the accurate therapeutic approach will require correct diagnosis., NA
- Published
- 2020
28. Metastatic Liver Tumors in Surgical Pathology: Impact of Contemporary Diagnostic and Therapeutic Paradigms in a Tertiary Care Center.
- Author
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Armutlu, Ayşe, Saeed, Omer, and Saxena, Romil
- Subjects
- *
LIVER tumors , *SURGICAL pathology , *BREAST , *GASTROINTESTINAL stromal tumors , *TERTIARY care , *METASTASIS - Abstract
We analyzed metastatic liver tumors received in the department of pathology in a tertiary care center over a 3-year period. There were 509 metastatic liver tumors; counterintuitively, there were as many resections (235 cases) as biopsies (274 cases). This unexpected finding reflects contemporaneous organ-specific paradigms for diagnosis and management of metastatic liver disease in oncologic practice, and the association of our practice with a National Cancer Institute-designated comprehensive cancer center with expertise and specialization in liver surgery. We receive a large number of resections for metastatic liver tumors because metastasectomy from a variety of primary tumors is associated with improved overall, and in many instances, disease-free, long-term survival. Metastatic colorectal carcinomas, metastatic neuroendocrine tumors, and metastatic gastrointestinal stromal tumors constituted 78% of resections because the largest body of literature and cumulative experience exists for these lesions. In contrast, breast carcinomas and pancreatic carcinomas, which are the next common metastatic liver tumors were biopsied but rarely resected, because metastasectomy is not the standard of care for these tumors. Immunohistochemistry was performed in less than a quarter of the total number of cases (23%), because the primary tumor site was known in the vast majority of cases. Of the 42 cases with unknown primary tumor, it was elucidated in 50% of the cases by immunohistochemical and clinical work-up. Of the cases with known primary tumor, immunohistochemistry was performed mostly in metastatic breast, colon, and lung carcinomas. In these cases, biomarker analyses provided additional information relevant to clinical management. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
29. Can Extraprostatic Extension Be Predicted by Tumor-Capsule Contact Length in Prostate Cancer? Relationship With International Society of Urological Pathology Grade Groups
- Author
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Bakir, Baris, primary, Onay, Aslıhan, additional, Vural, Metin, additional, Armutlu, Ayşe, additional, Yıldız, Sevda Özel, additional, and Esen, Tarık, additional
- Published
- 2020
- Full Text
- View/download PDF
30. TRMU-related transient liver failure of infancy presents with microcephaly and neurodevelopmental delay
- Author
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Azaklı, Hülya; Yücel, Esra; Arıkan, Çiğdem; Armutlu, Ayşe; Eraslan, Serpil (ORCID & YÖK ID); Karabey, Hülya Kayserili (ORCID 0000-0003-0376-499X & YÖK ID 7945), Graduate School of Health Sciences; School of Medicine, Department of Medical Genetics; Department of Pediatrics, Azaklı, Hülya; Yücel, Esra; Arıkan, Çiğdem; Armutlu, Ayşe; Eraslan, Serpil (ORCID & YÖK ID); Karabey, Hülya Kayserili (ORCID 0000-0003-0376-499X & YÖK ID 7945), Graduate School of Health Sciences; School of Medicine, and Department of Medical Genetics; Department of Pediatrics
- Abstract
NA
- Published
- 2019
31. Can Survivin, IMP3 and GLUT-1 be helpful in the differential diagnosis of peritoneal effusion cytology?
- Author
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Sadioğlu, Aysu, Erdem, Özlem, Taşkıran, Çağatay, Ak, Nihan, Helvacı Armutlu, Ayşe, and Uyar Göçün, Feriha Pınar
- Published
- 2018
32. Endobronchial Ultrasonography Elastography for predicting malignancy
- Author
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Çağlayan, Benan, primary, Iliaz, Sinem, additional, Bulutay, Pınar, additional, Armutlu, Ayşe, additional, Uzel, Fatma Isil, additional, Öztürk, Ayşe Bilge, additional, and Pur özyiğit, Leyla, additional
- Published
- 2018
- Full Text
- View/download PDF
33. Erdheim-chester disease: Case report with testes involvement and review of literature
- Author
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Sezer, Havva, primary, Aygün, Murat Serhat, additional, Armutlu, Ayşe, additional, Acar, Ömer, additional, Falay, Fikri Okan, additional, Yazici, Dilek, additional, Deyneli, Oğuzhan, additional, and Alagöl, Faruk, additional
- Published
- 2018
- Full Text
- View/download PDF
34. Comparison between rejection activity index and national institutes of health grading system in liver biopsies for the diagnosis of graft versus host disease
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AKI, ŞAHİKA ZEYNEP, KOÇAK, ÜLKER, ARMUTLU, AYŞE, SUCAK, AYHAN GÜLSAN, ÖĞÜT, BETÜL, AKYOL, GÜLEN, KAYA, ZÜHRE, and ESENDAĞLI, GÜLDAL
- Published
- 2016
35. Vulvar Inflammatory Linear Verrucous Epidermal Nevus: Remission with Nonsteroidal Antiinflammatory Cream: Case Report
- Author
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GÖKALP, Hilal, primary and ARMUTLU, Ayşe, additional
- Published
- 2017
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- View/download PDF
36. Siroz vakalarının laennec skorlama sistemine göre yeniden sınıflandırılması, histolojik progresyon belirteçlerinin araştırılması ve siroz zemininde gelişen prekanseröz lezyonların ve hepatosellüler karsinomun glutamin sentetaz ve hsp 70 belirteçleri ile kökeninin ve gelişim paterninin ortaya konması
- Author
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Armutlu, Ayşe, Akyol, Gülen, and Patoloji Anabilim Dalı
- Subjects
Carcinoma-hepatocellular ,Precancerous conditions ,Glutamine ,Carcinoma ,Liver cirrhosis ,Pathology ,Liver function tests ,Patoloji ,Liver diseases ,Biomarkers-tumor - Abstract
Siroz etyolojisi ve kliniği çeşitlilik gösteren son dönem karaciğer hastalığıdır. Güncel histolojik evreleme sistemleri sirozu tek bir kategoride değerlendirmektedir. Son yıllarda karaciğer yetmezliği ve portal hipertansiyon kliniği gelişen hastalarda, bazı belirleyici histolojik bulgular olduğu ve sirozun etyolojiye yönelik tedavi ile gerileyebildiği vurgulanmış; ve sirozun histolojik alt klasifikasyonuna ihtiyaç duyulmuştur.Bu çalışmada siroz tanısı almış 43 rezeksiyon materyalinde, Laennec fibrozis skorlarının klinik ve radyolojik parametrelerle ilişkisi araştırılmıştır. Ayrıca siroz zemininde gelişen prekanseröz lezyonlarda ve hepatosellüler karsinomda Glutamin sentetaz ve HSP 70 belirteçleri değerlendirilmiştir. Laennec fibrozis skorları ile hastaların asit, varis, kanama durumu ve evre arasında istatistiksel olarak anlamlı farklılık saptanmıştır. Nodül içi nekroinflamatuar aktivite derecesi ile asit, kollateral oluşumu, dalak boyutu ve evre arasında; portal/septal inflamasyon ve interfaz aktivite derecesi ile etyoloji arasında istatistiksel olarak anlamlı farklılık saptanmıştır. Siroz hastalarından 17'sinde saptanan toplam 45 adet nodüler lezyonda GS ve HSP 70 sitoplazmik boyanması ile nodül tipleri arasında anlamlı fark saptanmış, ancak HSP 70 nükleer boyanması ile fark saptanmamıştır. Nodül çapları ile hastaların AFP düzeyinin sirotik nodülden hepatosellüler karsinoma doğru ilerledikçe arttığı dikkati çekmiş olup, nodül çapı ile nodül tipleri arasında anlamlı fark saptanmıştır.Sonuçta, rezeksiyon materyallerinde de iğne biyopsilerinde olduğu gibi Laennec Fibrozis skorlarının, klinik verilerde anlamlı farklılıklar gösteren alt grupları temsil ettiği görülmüştür. Sirozun alt klasifikasyonunun prognozun ve tedaviye cevabın belirlenmesinde yararlı olabileceği düşünülmüştür. Ayrıca 2 cm'in altındaki nodüler lezyonlara tanı verirken literatürde de yer aldığı gibi HSP 70, GS ve Glipican-3'ü içeren immünhistokimyasal panel uygulanması gerektiği sonucuna varılmıştır.Anahtar kelimeler: Siroz, Laennec, Displazi, Hepatosellüler Karsinom, İmmünhistokimya Cirrhosis is the end result of chronic liver disease which has etiologic and clinic diversity. Current histologic staging systems evaluate cirrhosis in a single category. Recently regression in fibrosis has been noticed and some highlighted histologic features has been realized in cirrhotic patients suffering from portal hipertension and liver failure. Therefore a new histologic classification of cirrhosis has been challanged.In this study, 43 resection materials having cirrhosis had been enrolled. The Laennec fibrosis scores were applied and found to be correlated with clinical and radiological parameters. Furthermore, Glutamine synthetase and HSP 70 stainings were evaluated in the materials having precancerous lesions and hepatocellular carcinoma. Laennec fibrosis scores were significantly correlated with the presence of ascites and variceal bleeding. Statistically significant differences were detected in between the degree of intranodular necroinflammatory activity and decompansation parameters. There were also statistically significant differences in between the etiology and degree of portal inflamation and interface activity. A total of 45 nodular lesions were detected in 17 patients. The cytoplasmic staining of GS and HSP70 in these nodules with showed significant differences according to the type of the nodules. However nuclear staining of HSP70 was not significant. The size of the nodule and AFP levels were found to be increased throught to progression of benign nodule to HCC. As a conclusion, Laennec fibrosis scores were found to be correlated significantly with the clinical subgroups of cirrhosis. Subclassification of cirrhosis is thought to be useful in determining the prognosis and evaluating the response to treatment. Furthermore, GS and HSP 70 are found to be useful markers in the diagnosis of nodular lesions smaller than 2 cm.Keywords: Cirrhosis, Laennec, Dysplasia, Hepatocellular carcinoma, Immunohıstochemistry 133
- Published
- 2014
37. Vulvar Înflamatuar Lineer Verrüköz Epidermal Nevüs: Nonsteroidal Antiinflamatuar Krem ile Remisyon.
- Author
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G0KALP, Hilal and ARMUTLU, Ayşe
- Abstract
Inflammatory linear verrucous epidermal nevus (ILVEN) is usually accompanied by persistent and severe pruritus. It is mostly located in the lower left limb as hyperpigmented or erythematous hyperkeratotic linear papules and/or plaques. Genital/perigenital involvement is extremely rare. It varies in size from very small lesions to the involvement of the whole extremity. The differential diagnosis is broad, including but not limited to lineer psoriasis, lichen striatus, verrucous epidermal nevus, lichen simplex chronicus, linear lichen planus and linear Darier disease and, prognosis is poor. In this report, we present a case of vulvar ILVEN that responded to topical nonsteroidal anti-inflammatory cream. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
38. Nasopharyngeal Glial Heterotopia with Intracranial Extension: A Case Report.
- Author
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Gökler, Ozan, Karanfil, Işıl, Koçak, İlker, Altuntaş, Muzaffer Ozan, Armutlu, Ayşe, and Ünal, Ömer Faruk
- Subjects
NASOPHARYNX tumors ,RESPIRATORY distress syndrome ,CANCER histopathology ,ONCOLOGIC surgery ,ENDOSCOPIC surgery - Abstract
Copyright of Turkish Archives of Otolaryngology / Türk Otolarengoloji Arsivi is the property of Turkish Otorhinolaryngology & Head & Neck Surgery Foundation and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2018
- Full Text
- View/download PDF
39. Quantitative phosphoproteomics analysis uncovers PAK2 and CDK1 mediated malignant signaling pathways in clear cell Renal Cell Carcinoma
- Author
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Aydanur Senturk, Ayse T. Sahin, Ayse Armutlu, Murat Can Kiremit, Omer Acar, Selcuk Erdem, Sidar Bagbudar, Tarik Esen, Nurhan Ozlu, Şentürk, Aydanur, Şahin, Ayşe Tuğçe, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Kiremit, Murat Can (ORCID 0000-0002-6676-9205 & YÖK ID 222920), Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530), Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536), Özlü, Nurhan (ORCID 0000-0002-5157-8780 & YÖK ID 105301), Erdem, Selçuk, Bağbudar, Sidar, Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Graduate School of Sciences and Engineering, College of Sciences, School of Medicine, and Department of Molecular Biology and Genetics
- Subjects
Male ,Vascular Endothelial Growth Factor A ,Phosphopeptides ,Phosphoproteomics ,Renal cell carcinoma ,PAK2 ,Drug targets ,Signaling pathways ,Biochemistry ,Kidney Neoplasms ,Analytical Chemistry ,Gene Expression Regulation, Neoplastic ,p21-Activated Kinases ,Cell Line, Tumor ,CDC2 Protein Kinase ,Humans ,Biochemistry and molecular biology ,Female ,Molecular Biology ,Carcinoma, Renal Cell ,Signal Transduction ,Cell Proliferation - Abstract
Clear cell Renal Cell Carcinoma (ccRCC) is among the 10 most common cancers in both men and women and causes more than 140,000 deaths worldwide every year. In order to elucidate the underlying molecular mechanisms orchestrated by phosphorylation modifications, we per-formed a comprehensive quantitative phosphoproteomics characterization of ccRCC tumor and normal adjacent tissues. Here, we identified 16,253 phosphopeptides, of which more than 9000 were singly quantified. Our in-depth analysis revealed 600 phosphopeptides to be significantly differentially regulated between tumor and normal tissues. Moreover, our data revealed that significantly up -regu-lated phosphoproteins are associated with protein syn-thesis and cytoskeletal re-organization which suggests proliferative and migratory behavior of renal tumors. This is supported by a mesenchymal profile of ccRCC phos-phorylation events. Our rigorous characterization of the renal phosphoproteome also suggests that both epidermal growth factor receptor and vascular endothelial growth factor receptor are important mediators of phos-pho signaling in RCC pathogenesis. Furthermore, we determined the kinases p21-activated kinase 2, cyclin-dependent kinase 1 and c-Jun N-terminal kinase 1 to be master kinases that are responsible for phosphorylation of many substrates associated with cell proliferation, inflammation and migration. Moreover, high expression of p21-activated kinase 2 is associated with worse survival outcome of ccRCC patients. These master kinases are targetable by inhibitory drugs such as fostamatinib, min-ocycline, tamoxifen and bosutinib which can serve as novel therapeutic agents for ccRCC treatment., NO acknowledges the Royal Society Newton Advanced Fellowship (NA170389) .
- Published
- 2022
40. Quantitative proteomics identifies secreted diagnostic biomarkers as well as tumor-dependent prognostic targets for clear cell Renal Cell Carcinoma
- Author
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Tarık Esen, Murat Can Kiremit, Ömer Acar, Nurhan Özlü, Nurcan Tuncbag, Aydanur Senturk, Ayse Armutlu, Ayse Tugce Sahin, Selcuk Erdem, Sidar Bagbudar, Özlü, Nurhan (ORCID 0000-0002-5157-8780 & YÖK ID 105301), Şenturk, Aydanur, Şahin, Ayşe Tuğçe, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Kiremit, Murat Can, Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530), Esen, Tarık, Tunçbağ, Nurcan (ORCID 0000-0002-0389-9459 & YÖK ID 245513), Erdem, Selçuk, Bağbudar, Sidar, College of Sciences, Graduate School of Sciences and Engineering, Graduate School of Health Sciences, School of Medicine, College of Engineering, Department of Molecular Biology and Genetics, and Department of Chemical and Biological Engineering
- Subjects
Male ,Proteomics ,Cancer Research ,Quantitative proteomics ,02 engineering and technology ,Disease ,Biology ,010402 general chemistry ,01 natural sciences ,FERMT3 ,Biomarkers, Tumor ,Humans ,Medicine ,Diagnostic biomarker ,In patient ,Molecular Biology ,Carcinoma, Renal Cell ,Survival rate ,business.industry ,021001 nanoscience & nanotechnology ,Prognosis ,medicine.disease ,Phenotype ,Kidney Neoplasms ,0104 chemical sciences ,Biomarker (cell) ,Clear cell renal cell carcinoma ,Oncology ,Cell biology ,Cancer research ,Female ,0210 nano-technology ,business ,Biomarkers ,Drug repurposing ,Renal Cell Carcinoma ,Urine - Abstract
Clear cell renal cell carcinoma (ccRCC) is the third most common and most malignant urological cancer, with a 5-year survival rate of 10% for patients with advanced tumors. Here, we identified 10,160 unique proteins by in-depth quantitative proteomics, of which 955 proteins were significantly regulated between tumor and normal adjacent tissues. We verified four putatively secreted biomarker candidates, namely, PLOD2, FERMT3, SPARC, and SIRPa, as highly expressed proteins that are not affected by intratumor and intertumor heterogeneity. Moreover, SPARC displayed a significant increase in urine samples of patients with ccRCC, making it a promising marker for the detection of the disease in body fluids. Furthermore, based on molecular expression profiles, we propose a biomarker panel for the robust classification of ccRCC tumors into two main clusters, which significantly differed in patient outcome with an almost three times higher risk of death for cluster 1 tumors compared with cluster 2 tumors. Moreover, among the most significant dustering proteins, 13 were targets of repurposed inhibitory FDA-approved drugs. Our rigorous proteomics approach identified promising diagnostic and tumor-discriminative biomarker candidates which can serve as therapeutic targets for the treatment of ccRCC. Implications: Our in-depth quantitative proteomics analysis of ccRCC tissues identifies the putatively secreted protein SPARC as a promising urine biomarker and reveals two molecular tumor phenotypes., NA
- Published
- 2021
41. Metastatic liver tumors in surgical pathology: impact of contemporary diagnostic and therapeutic paradigms in a tertiary care center
- Author
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Omer Saeed, Ayse Armutlu, Romil Saxena, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Saeed, Omer, Saxena, Romil, and School of Medicine
- Subjects
medicine.medical_specialty ,Metastatic liver tumors ,Metastatic neuroendocrine carcinoma ,Metastatic colorectal carcinoma ,Metastatic gastrointestinal stromal tumor ,Liver transplantation ,Immunohistochemistry ,business.industry ,General surgery ,medicine.medical_treatment ,Liver Neoplasms ,Tertiary care ,Pathology and Forensic Medicine ,Tertiary Care Centers ,Surgical pathology ,Pathology ,Surgery ,Neuroendocrine Tumors ,Humans ,Medicine ,Anatomy ,Colorectal Neoplasms ,business - Abstract
We analyzed metastatic liver tumors received in the department of pathology in a tertiary care center over a 3-year period. There were 509 metastatic liver tumors; counterintuitively, there were as many resections (235 cases) as biopsies (274 cases). This unexpected finding reflects contemporaneous organ-specific paradigms for diagnosis and management of metastatic liver disease in oncologic practice, and the association of our practice with a National Cancer Institute-designated comprehensive cancer center with expertise and specialization in liver surgery. We receive a large number of resections for metastatic liver tumors because metastasectomy from a variety of primary tumors is associated with improved overall, and in many instances, disease-free, long-term survival. Metastatic colorectal carcinomas, metastatic neuroendocrine tumors, and metastatic gastrointestinal stromal tumors constituted 78% of resections because the largest body of literature and cumulative experience exists for these lesions. In contrast, breast carcinomas and pancreatic carcinomas, which are the next common metastatic liver tumors were biopsied but rarely resected, because metastasectomy is not the standard of care for these tumors. Immunohistochemistry was performed in less than a quarter of the total number of cases (23%), because the primary tumor site was known in the vast majority of cases. Of the 42 cases with unknown primary tumor, it was elucidated in 50% of the cases by immunohistochemical and clinical work-up. Of the cases with known primary tumor, immunohistochemistry was performed mostly in metastatic breast, colon, and lung carcinomas. In these cases, biomarker analyses provided additional information relevant to clinical management., NA
- Published
- 2021
42. Can remote ischemic preconditioning counteract the renal functional deterioration attributable to partial nephrectomy under warm ischemia? results of an animal study
- Author
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Kanbay, Mehmet (ORCID 0000-0002-1297-0675 & YÖK ID 110580), Baydar, Dilek Ertoy (ORCID 0000-0003-0784-8605 & YÖK ID 8025), Acar, Ömer (ORCID 0000-0002-6094-9264 & YÖK ID 237530), Taşkın, Ali Cihan (ORCID 0000-0003-3196-821X & YÖK ID 291296), Esen, Tarık (ORCID 0000-0002-0961-9374 & YÖK ID 50536), Armutlu, Ayşe, İncir, Said, Ertuğlu, Lale Aslıhan, Özel, Melis, Uhlig, Annemarie, Mut, Tuna Till, Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Koç University Hospital, and School of Medicine
- Subjects
Urology and nephrology ,Kidney ,Ischemia ,Function ,Preconditioning ,Remote ,Biomarker - Abstract
Background: to investigate if remote ischemic preconditioning (RIPC) can offer any renoprotective value by counteracting the deleterious effect of partial nephrectomy (PN) under warm ischemia on renal function. Methods: four groups, each with 5 Wistar albino rats, were constructed; RIPC + PN, PN, RIPC and sham. Right nephrectomy was performed to constitute a solitary kidney model. RIPC denoted sequential clamping/declamping of the femoral artery/vein complex. PN was performed under warm-ischemia following RIPC. Blood samples were collected on multiple occasions until euthanasia on day 7. Immunoassays were conducted to measure the serum and tissues levels of kidney injury markers. Kidneys were examined histologically and morphometric analyzes were performed using digital scanning. Results: IL-33 levels did not differ significantly between the groups. Serum levels of KIM-1, NGAL, and aldose reductase in RIPC + PN, PN and RIPC groups were significantly lower than that of sham group. Tissue biomarker levels were similar across groups. The observed trend in mean necrosis area of PN group was higher than that of RIPC + PN group (p > 0.05). The transitional zone between necrosis and healthy tissue showed a trend towards increasing width in the rats subjected to RIPC before PN vs. those who underwent PN without RIPC (p > 0.05). Conclusion: RIPC failed to counteract the renal functional consequences of PN under warm ischemia in a solitary kidney animal model. The supportive but marginal histological findings in favor of RIPC's renoprotective potential were not supplemented with the changes in serum and tissue biomarker levels., University of Gottingen Open Access Publication Funds
- Published
- 2021
43. A novel insight into the pathophysiology of autoimmune hepatitis: an immune activator mutation in the FLT3 receptor
- Author
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Muhammed Yuksel, Cigdem Arikan, Ayse Armutlu, Farinaz Nazmi, Serdar Ceylaner, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Yüksel, Muhammet, Nazmi, Farinaz, Arıkan, Çiğdem (ORCID 0000-0002-0794-2741 & YÖK ID 240198), Koç University Research Center for Translational Medicine (KUTTAM) / Koç Üniversitesi Translasyonel Tıp Araştırma Merkezi (KUTTAM), Koç University Hospital, and School of Medicine
- Subjects
Autoimmune hepatitis ,Liver disease ,Mutation ,Immune system ,business.industry ,Mutation (genetic algorithm) ,Immunology ,Medicine ,Receptor ,business ,medicine.disease ,Pathophysiology - Abstract
Autoimmune hepatitis (AIH) is a chronic progressive autoimmune liver disease characterized by hypergammaglobulinemia, interface hepatitis, a female preponderance, and the presence of autoantibodies in most patients. The presence of HLA-DR3/DR4 and functional impairment in regulatory T cells are associated with AIH. However, AIH is a multifactorial complex disease. This report is a description of a case of seronegative AIH in a girl with chronic hepatitis, a high immunoglobulin E (IgE) level, perforating nodular dermatitis, and sheer eosinophilia. To re-evaluate the diagnosis, whole exon sequencing was performed. It was determined that the patient had ancestral haplotype A1-B8-DR3, which is associated with autoimmunity. Importantly, it was also noted that an undocumented point mutation (Ala627Thr) of the FMS-like tyrosine 3 kinase (FLT3) receptor was present. This FLT3 receptor gain-of-function mutation is associated with the activation of the mechanistic target of rapamycin (mTOR), and dendritic cell activation. In addition, a loss-of-function mutation in the melanocortin-3 receptor gene, which inhibits interleukin 4, was detected. The constellation of these immune deregulatory factors may have propagated auto-aggression of the liver, causing chronic hepatitis with AIH features. The findings of seronegativity with eosinophilia and a high IgE level led us to hypothesize that the pathognomonic mechanism in this case was unlike that of classic AIH pathophysiology. Since mTOR is constitutively activated, mTOR inhibitors may be a useful option to treat AIH and dermatitis., NA
- Published
- 2021
44. Hepatocellular carcinomas with granulomatous inflammation in tumor stroma: clinicopathologic characteristics
- Author
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Burcu Saka, Ferhat Ozden, Gokhan Ertugrul, Ayse Armutlu, Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Saka, B., Özden, F., Ertuğrul, G., and School of Medicine
- Subjects
Pathology ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,medicine.medical_treatment ,Pathology and Forensic Medicine ,Humans ,Medicine ,Stage (cooking) ,Granuloma ,Hepatocellular carcinoma ,Inflammation ,Neoadjuvant therapy ,business.industry ,Liver Neoplasms ,Nodule (medicine) ,Hepatocellular Carcinoma ,Middle Aged ,HCCS ,medicine.disease ,Concomitant ,Etiology ,medicine.symptom ,business ,Clear cell - Abstract
Objective: to determine the frequency of granulomatous inflammation within hepatocellular carcinoma (HCC) and its clinicopathologic associations. Material and method: fifty-eight HCCs (51 explants, 3 lobectomies, and 4 segmentectomies) were reviewed. Results: five (8.6%) cases (F/M=1/4, mean age: 63.6) were identified with granulomas.1/5 had history of neoadjuvant therapy. 4/5 patients presented with early stage (pT1/2). All were well-differentiated (Grade1-2/4). The mean number of tumor foci was 3.6, with a median size of 2.2 cm. All of them had advanced fibrosis. No difference was identified from cases without granulomas (n=53) in terms of prognosis and aforementioned parameters (p> 0.05). Granulomas were mainly concentrated in peripheral parts of the tumors. One case with nodule-in-nodule formation had granulomas lined along the border of the inner nodule. In 2 cases, granulomas were identified in steatohepatitic areas, while another had clear cell change. Only 1 had necrotizing granulomas, none with acid resistant bacilli. Two cases revealed concomitant granulomas in the adjacent liver parenchyma in addition to the tumor stroma. Except for one with a history of tuberculosis, none of the cases had a granulomatous disease.Conclusion: this is the largest case series of HCCs with granulomas by far. Our data revealed neither clinicopathologic and prognostic difference nor definite etiology related to granulomas. Yet, association with steatotic and clear tumor cells suggests the role of cytoplasmic content, while distribution of granulomas points to host immune response., NA
- Published
- 2021
45. Desmoplastic small round cell tumor of the kidney: a case report
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Dilek Ertoy Baydar, Oguz Aydin, Ayse Armutlu, Yarkın Kamil Yakupoğlu, Ayhan Dagdemir, Baydar, Dilek Ertoy (ORCID 0000-0003-0784-8605 & YÖK ID 8025), Armutlu, Ayşe, Aydın, Oğuz, Dağdemir, Ayhan, Yakupoğlu, Yarkın Kamil, and School of Medicine
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Histology ,Desmoplastic small-round-cell tumor ,Case Report ,Sarcoma, Ewing ,Desmoplastic Small Round Cell Tumor ,Case report ,Desmoplastic small round cell tumor ,EWSR1 ,Kidney ,WT1 ,Wilms Tumor ,Pathology and Forensic Medicine ,Diagnosis, Differential ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,medicine ,lcsh:Pathology ,Neoplasm ,Humans ,Neuroectodermal Tumors, Primitive ,Child ,business.industry ,Wilms' tumor ,General Medicine ,medicine.disease ,Kidney Neoplasms ,Desmoplasia ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Primitive neuroectodermal tumor ,Immunohistochemistry ,Female ,Clear-cell sarcoma ,medicine.symptom ,business ,lcsh:RB1-214 - Abstract
Background: desmoplastic small round cell tumor (DSRCT) is a rare, aggressive neoplasm seen in children and young adults, usually manifested by involvement of abdominal serosa. Here, we present an unusual case of primary DSRCT of kidney. Case presentation: the patient was an 8-year-old girl with a large renal mass which was confused with primitive neuroectodermal tumor (PNET) in the needle biopsy. The tumor had a variegated histology revealing frequent pseudo-rosette formations, pseudopapillary architecture, rhabdoid, clear or pleomorphic cells in addition to typical small round cell morphology and desmoplasia. It showed immunohistochemical features of DSRCT, and EWSR1 re-arrangement. Conclusions: proffering this diagnosis is particularly difficult for tumors of viscera because of the incognizance of the entity in these locations. Moreover, DSRCT is a great mimicker and may get easily confused with more common kidney malignancies of childhood such as Wilms tumor, PNET/EWS, rhabdoid tumor, clear cell sarcoma, and other small round cell tumors as well as renal cell carcinomas. The distinction is critical as the accurate therapeutic approach will require correct diagnosis., NA
- Published
- 2020
46. Endobronşiyal ultrasonografi elastografinin maligniteyi öngörmedeki rolü
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Pinar Bulutay, Isil Uzel, Ayse Armutlu, Benan Caglayan, Sinem Iliaz, Ayşe Bilge Öztürk, Çağlayan, Benan Niku (ORCID 0000-0002-6131-157X & YÖK ID 230719), İliaz, Sinem (ORCID & YÖK ID 168584), Bulutay, Pınar (ORCID 0000-0001-5497-1513 & YÖK ID 133565), Armutlu, Ayşe (ORCID 0000-0001-9804-0454 & YÖK ID 133567), Uzel, Işıl, Öztürk, Ayşe Bilge (ORCID 0000-0003-0166-424X & YÖK ID 147629), Koç University Hospital, and School of Medicine
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Pulmonary and Respiratory Medicine ,Endobronchial ultrasonography ,medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Bronchoscopy ,Lung cancer ,Lymphadenopathy ,Transbronchial needle aspiration biopsy ,Malignancy ,medicine.disease ,medicine.anatomical_structure ,Positron emission tomography ,Medicine ,Surgery ,Original Article ,Lymph ,Radiology ,Elastography ,Cardiology and Cardiovascular Medicine ,business ,Lymph node - Abstract
Background: this study aims to investigate the role of endobronchial ultrasonography elastography in predicting malignancy. Methods: between January 2016 and December 2016, a total of 221 lymph nodes were biopsied using the endobronchial ultrasonography-guided transbronchial needle aspiration from 119 consecutive patients (69 males, 50 females; mean age 63.2±12.4 years; range, 16 to 86 years) were included. Lymph nodes were scored by elastography according to their colors in four categories before the procedure. The strain ratio was calculated based on the region of interest after three measurements. Results: of the patients, 93 were diagnosed with a malignancy through endobronchial ultrasonography-guided transbronchial needle aspiration biopsy. The mean lymph node score of benign versus malignant lesions was 2.2±1.0 and 3.2±1, respectively (p, NA
- Published
- 2020
47. Three consequent pediatric liver transplant deaths in the COVID-19 era
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Imam, Ashraf, Karataş, Cihan, Imam, R., Armutlu, Ayşe, Meciti, N., Karakaya, Afak Durur, Kalayoğlu, Münci, Kanmaz, Turan, and Koç University Hospital
- Subjects
Medicine ,Transplantation ,Pediatric liver transplant ,COVID-19 ,Respiratory failure - Abstract
The effect of COVID-19 on the transplant recipients is not well-established. Many reports underestimate the effect of COVID-19 on the immunosuppressed population. Herein, we report on 3 pediatric liver transplant recipients who were transplanted at our center between February 11 and March 10, 2020-during the COVID-19 pandemic era. The 3 patients aged between 5 and 10 months, had a rapid and aggressive respiratory deterioration that necessitated mechanical ventilation and extracorporeal life support; and eventually died. The clinical and pathological pictures likely represent COVID-19 pneumonia. Chest x-rays showed progressive infiltrates. Lung autopsies showed diffuse alveolar damage in two cases. We concluded that COVID-19 is very likely to have catastrophic effects on transplant recipients., NA
- Published
- 2020
48. Can the Briganti 2019 nomogram be modified to predict lymph node metastasis risk in patients with prostate cancer detected with in-bore biopsy?
- Author
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Madendere S, Kılıç M, Gürses B, Vural M, Armutlu A, Kulaç İ, Tarım K, Esen B, Aykanat İC, Veznikli M, Canda AE, Balbay D, Baydar DE, Kordan Y, and Esen T
- Abstract
Objectives: We aimed to modify the Briganti 2019 nomogram and to test whether it is valid for patients who were diagnosed with prostate cancer through in-bore prostate biopsies., Methods: Data for 204 patients with positive multiparametric prostate MRI and prostate cancer identified either by mpMRI-cognitive/software fusion or in-bore biopsy and who underwent robot-assisted radical prostatectomy and extended pelvic lymph node dissection between 2012 and 2023 were retrospectively analyzed. The Briganti 2019 nomogram was applied to the mpMRI-cognitive/software fusion biopsy group (142 patients) in the original form, and then, two modifications were tested for the targeted component. Original and modified scores were compared. These modifications were adapted for the in-bore biopsy group (62 patients). The final histopathologic stage was regarded as the gold standard., Results: Nodal metastases were identified in 18/142 (12.6%) of mpMRI-cognitive/software fusion biopsy patients and 8/62 (12.9%) of the in-bore biopsy patients. In the mpMRI-cognitive/software fusion biopsy group, tumor size/core size (%) of targeted biopsy cores and positive core percentage on systematic biopsy were significant parameters for lymph node metastasis based on univariate logistic regression analyses (p < 0.05). With the modifications of these parameters for the in-bore biopsy group, V1 modification of the Briganti 2019 nomogram provided 100% sensitivity and 31.5% specificity (AUC:0.627), while V2 modification provided 75% sensitivity and 46.3% specificity (AUC:0.645)., Conclusions: Briganti 2019 nomogram may be modified by utilizing tumor size/core size (%) for targeted biopsy cores instead of positive core percentage on systematic biopsy or by not taking both parameters into consideration to detect node metastasis risk of patients diagnosed with in-bore biopsies., (© 2024 The Japanese Urological Association.)
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- 2024
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- View/download PDF
49. Liver Transplantation for Nijmegen Breakage Syndrome With Hepatic Malignancy and Hepatopulmonary Syndrome After Bone Marrow Transplantation: A Case Report.
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Şal O, Erbey F, Armutlu A, Karasu G, Demir B, Kızılkan NU, Akbulut A, Kanmaz T, and Alim A
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- Humans, Adolescent, Female, Bone Marrow Transplantation adverse effects, Living Donors, Liver Transplantation, Liver Neoplasms surgery, Nijmegen Breakage Syndrome complications, Hepatopulmonary Syndrome surgery, Hepatopulmonary Syndrome etiology, Hepatopulmonary Syndrome therapy
- Abstract
Background: Nijmegen breakage syndrome (NBS) is an autosomal recessive DNA repair disorder that manifests through increased genomic instability, malignancy, and cellular and humoral immunodeficiencies. The prognosis for NBS patients is poor due to their increased susceptibility to fatal infections and lymphoproliferative malignancies. Currently, there is no specific treatment for NBS, though allogeneic hematopoietic stem cell transplantation (HSCT) has been performed and documented as case series to demonstrate the utility of transplantation., Methods: A 14-year-old girl with NBS and haploidentical HSCT from her older brother due to recurrent lung infection was referred for liver transplantation (LT) due to liver cirrhosis, hepatopulmonary syndrome (HPS), and suspicion of liver malignancy. It was decided to perform LT using the living donor who had previously donated for HSCT., Results: Living donor left lobe LT was successfully performed from her brother. The patient experienced no complications in the early postoperative period and was discharged on the seventh postoperative day. Pathological examination of extracted liver has shown "intermediate cell carcinoma" in two foci. After 1 year LT, the patient has had an uneventful course in terms of LT complications and infection, with minimal immunosuppression., Conclusions: NBS patients have an increased prevalence of malignancies, including primary hepatic malignancy, but most are managed medically or with limited resections. Transplantation in these patients can be curative for hepatic malignancy with a favorable safety profile., (© 2024 Wiley Periodicals LLC.)
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- 2024
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- View/download PDF
50. Can Extraprostatic Extension Be Predicted by Tumor-Capsule Contact Length in Prostate Cancer? Relationship With International Society of Urological Pathology Grade Groups.
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Bakir B, Onay A, Vural M, Armutlu A, Yıldız SÖ, and Esen T
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- Aged, Contrast Media, Diffusion Magnetic Resonance Imaging, Humans, Image Interpretation, Computer-Assisted, Image-Guided Biopsy, Male, Middle Aged, Neoplasm Grading, Prostatectomy, Prostatic Neoplasms surgery, Retrospective Studies, Sensitivity and Specificity, Magnetic Resonance Imaging methods, Neoplasm Invasiveness diagnostic imaging, Neoplasm Invasiveness pathology, Prostatic Neoplasms diagnostic imaging, Prostatic Neoplasms pathology
- Abstract
OBJECTIVE. The objective of our study was to evaluate the relationship between the tumor-capsule contact length, defined as tumor contact length (TCL), and extraprostatic extension (EPE) using the MRI-based TCL measurements and the real TCL measurements from pathology and to determine whether the International Society of Urological Pathology (ISUP) grade group of the tumors influenced this relationship. MATERIALS AND METHODS. In this retrospective study, we reviewed prostate multiparametric MRI (mpMRI) studies performed between 2012 and 2018 of 1576 patients and found that 134 patients also underwent radical prostatectomy (RP) after mpMRI. Finally, 86 patients with index lesions in contact with the prostate capsule in RP specimens were enrolled in the study. ROC analysis was used to evaluate the cutoff values of TCLs measured at pathology and TCLs measured on MRI in terms of EPE according to ISUP grade groups. RESULTS. There was no statistically significant cutoff value for pathology-based TCL measurements in individual ISUP grade groups and subgroups. Although not statistically significant, pathology-based TCL cutoff values decreased (from 21.0 to 11.0 mm) as ISUP grade group increased in terms of EPE positivity. When the relationship between MRI-based TCL measurements and EPE was considered, statistically significant cutoff values (range, 14.5-16.6 mm) could be determined in many groups and subgroups with low ISUP grades (sensitivity, 66.7-100%; specificity, 52.8-93.0%; p = 0.006-0.042). However, no statistically significant cutoff value was found for high ISUP grades. CONCLUSION. ISUP grade groups may have an effect on the TCL-EPE relationship. When the MRI-based TCL and EPE relationship is evaluated independent of ISUP grade group, a cutoff value around 15-16 mm may be usable to predict EPE.
- Published
- 2020
- Full Text
- View/download PDF
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