23 results on '"AZİZOVA, Aynur"'
Search Results
2. Performance of amide proton transfer imaging to differentiate true progression from therapy-related changes in gliomas and metastases
- Author
-
Essed, Rajeev A., Prysiazhniuk, Yeva, Wamelink, Ivar J., Azizova, Aynur, and Keil, Vera C.
- Published
- 2024
- Full Text
- View/download PDF
3. Ethanol Sclerotherapy in the Management of Ovarian Endometrioma: Technical Considerations for Catheter- and Needle-Directed Sclerotherapy
- Author
-
Azizova, Aynur, Ciftci, Turkmen Turan, Gultekin, Murat, Unal, Emre, Akhan, Okan, Bozdag, Gurkan, and Akinci, Devrim
- Published
- 2024
- Full Text
- View/download PDF
4. The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI
- Author
-
Moawad, Ahmed W., Janas, Anastasia, Baid, Ujjwal, Ramakrishnan, Divya, Saluja, Rachit, Ashraf, Nader, Maleki, Nazanin, Jekel, Leon, Yordanov, Nikolay, Fehringer, Pascal, Gkampenis, Athanasios, Amiruddin, Raisa, Manteghinejad, Amirreza, Adewole, Maruf, Albrecht, Jake, Anazodo, Udunna, Aneja, Sanjay, Anwar, Syed Muhammad, Bergquist, Timothy, Chiang, Veronica, Chung, Verena, Conte, Gian Marco, Dako, Farouk, Eddy, James, Ezhov, Ivan, Khalili, Nastaran, Farahani, Keyvan, Iglesias, Juan Eugenio, Jiang, Zhifan, Johanson, Elaine, Kazerooni, Anahita Fathi, Kofler, Florian, Krantchev, Kiril, LaBella, Dominic, Van Leemput, Koen, Li, Hongwei Bran, Linguraru, Marius George, Liu, Xinyang, Meier, Zeke, Menze, Bjoern H, Moy, Harrison, Osenberg, Klara, Piraud, Marie, Reitman, Zachary, Shinohara, Russell Takeshi, Wang, Chunhao, Wiestler, Benedikt, Wiggins, Walter, Shafique, Umber, Willms, Klara, Avesta, Arman, Bousabarah, Khaled, Chakrabarty, Satrajit, Gennaro, Nicolo, Holler, Wolfgang, Kaur, Manpreet, LaMontagne, Pamela, Lin, MingDe, Lost, Jan, Marcus, Daniel S., Maresca, Ryan, Merkaj, Sarah, Pedersen, Gabriel Cassinelli, von Reppert, Marc, Sotiras, Aristeidis, Teytelboym, Oleg, Tillmans, Niklas, Westerhoff, Malte, Youssef, Ayda, Godfrey, Devon, Floyd, Scott, Rauschecker, Andreas, Villanueva-Meyer, Javier, Pfluger, Irada, Cho, Jaeyoung, Bendszus, Martin, Brugnara, Gianluca, Cramer, Justin, Perez-Carillo, Gloria J. Guzman, Johnson, Derek R., Kam, Anthony, Kwan, Benjamin Yin Ming, Lai, Lillian, Lall, Neil U., Memon, Fatima, Krycia, Mark, Patro, Satya Narayana, Petrovic, Bojan, So, Tiffany Y., Thompson, Gerard, Wu, Lei, Schrickel, E. Brooke, Bansal, Anu, Barkhof, Frederik, Besada, Cristina, Chu, Sammy, Druzgal, Jason, Dusoi, Alexandru, Farage, Luciano, Feltrin, Fabricio, Fong, Amy, Fung, Steve H., Gray, R. Ian, Ikuta, Ichiro, Iv, Michael, Postma, Alida A., Mahajan, Amit, Joyner, David, Krumpelman, Chase, Letourneau-Guillon, Laurent, Lincoln, Christie M., Maros, Mate E., Miller, Elka, Moron, Fanny, Nimchinsky, Esther A., Ozsarlak, Ozkan, Patel, Uresh, Rohatgi, Saurabh, Saha, Atin, Sayah, Anousheh, Schwartz, Eric D., Shih, Robert, Shiroishi, Mark S., Small, Juan E., Tanwar, Manoj, Valerie, Jewels, Weinberg, Brent D., White, Matthew L., Young, Robert, Zohrabian, Vahe M., Azizova, Aynur, Bruseler, Melanie Maria Theresa, Ghonim, Mohanad, Ghonim, Mohamed, Okar, Abdullah, Pasquini, Luca, Sharifi, Yasaman, Singh, Gagandeep, Sollmann, Nico, Soumala, Theodora, Taherzadeh, Mahsa, Vollmuth, Philipp, Foltyn-Dumitru, Martha, Malhotra, Ajay, Abayazeed, Aly H., Dellepiane, Francesco, Lohmann, Philipp, Perez-Garcia, Victor M., Elhalawani, Hesham, de Verdier, Maria Correia, Al-Rubaiey, Sanaria, Armindo, Rui Duarte, Ashraf, Kholod, Asla, Moamen M., Badawy, Mohamed, Bisschop, Jeroen, Lomer, Nima Broomand, Bukatz, Jan, Chen, Jim, Cimflova, Petra, Corr, Felix, Crawley, Alexis, Deptula, Lisa, Elakhdar, Tasneem, Shawali, Islam H., Faghani, Shahriar, Frick, Alexandra, Gulati, Vaibhav, Haider, Muhammad Ammar, Hierro, Fatima, Dahl, Rasmus Holmboe, Jacobs, Sarah Maria, Hsieh, Kuang-chun Jim, Kandemirli, Sedat G., Kersting, Katharina, Kida, Laura, Kollia, Sofia, Koukoulithras, Ioannis, Li, Xiao, Abouelatta, Ahmed, Mansour, Aya, Maria-Zamfirescu, Ruxandra-Catrinel, Marsiglia, Marcela, Mateo-Camacho, Yohana Sarahi, McArthur, Mark, McDonnell, Olivia, McHugh, Maire, Moassefi, Mana, Morsi, Samah Mostafa, Munteanu, Alexander, Nandolia, Khanak K., Naqvi, Syed Raza, Nikanpour, Yalda, Alnoury, Mostafa, Nouh, Abdullah Mohamed Aly, Pappafava, Francesca, Patel, Markand D., Petrucci, Samantha, Rawie, Eric, Raymond, Scott, Roohani, Borna, Sabouhi, Sadeq, Sanchez-Garcia, Laura M., Shaked, Zoe, Suthar, Pokhraj P., Altes, Talissa, Isufi, Edvin, Dhemesh, Yaseen, Gass, Jaime, Thacker, Jonathan, Tarabishy, Abdul Rahman, Turner, Benjamin, Vacca, Sebastiano, Vilanilam, George K., Warren, Daniel, Weiss, David, Worede, Fikadu, Yousry, Sara, Lerebo, Wondwossen, Aristizabal, Alejandro, Karargyris, Alexandros, Kassem, Hasan, Pati, Sarthak, Sheller, Micah, Link, Katherine E., Calabrese, Evan, Tahon, Nourel hoda, Nada, Ayman, Velichko, Yuri S., Bakas, Spyridon, Rudie, Jeffrey D., and Aboian, Mariam
- Subjects
Quantitative Biology - Other Quantitative Biology ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and benchmarking algorithms using rigorously annotated internationally compiled real-world datasets. This study presents the results of the segmentation challenge and characterizes the challenging cases that impacted the performance of the winning algorithms. Untreated brain metastases on standard anatomic MRI sequences (T1, T2, FLAIR, T1PG) from eight contributed international datasets were annotated in stepwise method: published UNET algorithms, student, neuroradiologist, final approver neuroradiologist. Segmentations were ranked based on lesion-wise Dice and Hausdorff distance (HD95) scores. False positives (FP) and false negatives (FN) were rigorously penalized, receiving a score of 0 for Dice and a fixed penalty of 374 for HD95. Eight datasets comprising 1303 studies were annotated, with 402 studies (3076 lesions) released on Synapse as publicly available datasets to challenge competitors. Additionally, 31 studies (139 lesions) were held out for validation, and 59 studies (218 lesions) were used for testing. Segmentation accuracy was measured as rank across subjects, with the winning team achieving a LesionWise mean score of 7.9. Common errors among the leading teams included false negatives for small lesions and misregistration of masks in space.The BraTS-METS 2023 challenge successfully curated well-annotated, diverse datasets and identified common errors, facilitating the translation of BM segmentation across varied clinical environments and providing personalized volumetric reports to patients undergoing BM treatment.
- Published
- 2023
5. JointNET: A Deep Model for Predicting Active Sacroiliitis from Sacroiliac Joint Radiography
- Author
-
Turk, Sevcan, Demirkaya, Ahmet, Turali, M Yigit, Hepdurgun, Cenk, Dar, Salman UH, Karabulut, Ahmet K, Azizova, Aynur, Orman, Mehmet, Tamsel, Ipek, Aydingoz, Ustun, Argin, Mehmet, and Cukur, Tolga
- Subjects
Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Purpose: To develop a deep learning model that predicts active inflammation from sacroiliac joint radiographs and to compare the success with radiologists. Materials and Methods: A total of 1,537 (augmented 1752) grade 0 SIJs of 768 patients were retrospectively analyzed. Gold-standard MRI exams showed active inflammation in 330 joints according to ASAS criteria. A convolutional neural network model (JointNET) was developed to detect MRI-based active inflammation labels solely based on radiographs. Two radiologists blindly evaluated the radiographs for comparison. Python, PyTorch, and SPSS were used for analyses. P<0.05 was considered statistically significant. Results: JointNET differentiated active inflammation from radiographs with a mean AUROC of 89.2 (95% CI:86.8%, 91.7%). The sensitivity was 69.0% (95% CI:65.3%, 72.7%) and specificity 90.4% (95% CI:87.8 % 92.9%). The mean accuracy was 90.2% (95% CI: 87.6%, 92.8%). The positive predictive value was 74.6% (95% CI: 72.5%, 76.7%) and negative predictive value was 87.9% (95% CI: 85.4%, 90.5%) when prevalence was considered 1%. Statistical analyses showed a significant difference between active inflammation and healthy groups (p<0.05). Radiologists accuracies were less than 65% to discriminate active inflammation from sacroiliac joint radiographs. Conclusion: JointNET successfully predicts active inflammation from sacroiliac joint radiographs, with superior performance to human observers.
- Published
- 2023
6. Craniocervical junction involvement in inflammatory arthritis: a single-center radiologic study.
- Author
-
Yalçinkaya, Fatma, Parlak Sağol, Şafak, Azizova, Aynur, Bilgin, Emre, Karli Oğuz, Kader, and Kalyoncu, Umut
- Subjects
Spondyloarthritis ,craniocervical junction ,radiography ,rheumatoid arthritis ,Humans ,Female ,Male ,Middle Aged ,Retrospective Studies ,Arthritis ,Rheumatoid ,Adult ,Magnetic Resonance Imaging ,Tomography ,X-Ray Computed ,Spondylarthritis ,Aged ,Arthritis ,Psoriatic ,Atlanto-Axial Joint ,Cervical Vertebrae ,Odontoid Process - Abstract
BACKGROUND/AIM: Craniocervical junction (CCJ) can be involved in inflammatory arthritis. We aimed to define types of CCJ involvement in rheumatoid arthritis (RA), spondyloarthritis (SpA), and psoriatic arthritis (PsA) and compare them with patients without inflammatory arthritides. MATERIALS AND METHODS: In this retrospective analysis, cervical CT or MRIs of patients with RA, SpA, or PsA, taken for any reason between 2010 and 2020, according to ICD-10 codes, were scanned. Demographic data of the patients were recorded. CCJ involvements (atlantoaxial, vertical, or subaxial subluxation, odontoid process involvement) were reevaluated by an experienced radiologist. The control group consisted of consecutive patients without inflammatory arthritis. RESULTS: Exactly 459 patients (204 RA, 200 SpA, and 55 PsA) and 78 patients in the control group were included in the study. CCJ involvement was detected in 101 (49.5%) RA, 53 (26.5%) SpA, 10 (18.2%) PsA, and 4 patients (5.1%) in the control group (p < 0.001). The odontoid process was one of the main targets, especially in RA patients (69 (33.8%)), which was significantly higher than in the SpA, PsA, and control groups. Although vertical subluxation (VS) was numerically higher in the RA and SpA groups compared to the control group, VS-related brainstem compression was relatively uncommon: 6 (2.9%) in RA, 1 (0.5%) in AS, and none in the PsA and control groups. CONCLUSION: CCJ involvement can often be detected in patients with inflammatory arthritis, especially in RA and SpA patients. The odontoid process is the main target of inflammation.
- Published
- 2023
7. Human performance in predicting enhancement quality of gliomas using gadolinium‐free MRI sequences.
- Author
-
Azizova, Aynur, Wamelink, Ivar J. H. G., Prysiazhniuk, Yeva, Cakmak, Marcus, Kaya, Elif, Petr, Jan, Barkhof, Frederik, and Keil, Vera C.
- Subjects
- *
MAGNETIC resonance imaging , *CONTRAST media , *DECISION trees , *STATISTICS , *GLIOMAS - Abstract
Background and Purpose: To develop and test a decision tree for predicting contrast enhancement quality and shape using precontrast magnetic resonance imaging (MRI) sequences in a large adult‐type diffuse glioma cohort. Methods: Preoperative MRI scans (development/optimization/test sets: n = 31/38/303, male = 17/22/189, mean age = 52/59/56.7 years, high‐grade glioma = 22/33/249) were retrospectively evaluated, including pre‐ and postcontrast T1‐weighted, T2‐weighted, fluid‐attenuated inversion recovery, and diffusion‐weighted imaging sequences. Enhancement prediction decision tree (EPDT) was developed using development and optimization sets, incorporating four imaging features: necrosis, diffusion restriction, T2 inhomogeneity, and nonenhancing tumor margins. EPDT accuracy was assessed on a test set by three raters of variable experience. True enhancement features (gold standard) were evaluated using pre‐ and postcontrast T1‐weighted images. Statistical analysis used confusion matrices, Cohen's/Fleiss' kappa, and Kendall's W. Significance threshold was p <.05. Results: Raters 1, 2, and 3 achieved overall accuracies of.86 (95% confidence interval [CI]:.81‐.90),.89 (95% CI:.85‐.92), and.92 (95% CI:.89‐.95), respectively, in predicting enhancement quality (marked, mild, or no enhancement). Regarding shape, defined as the thickness of enhancing margin (solid, rim, or no enhancement), accuracies were.84 (95% CI:.79‐.88),.88 (95% CI:.84‐.92), and.89 (95% CI:.85‐.92). Intrarater intergroup agreement comparing predicted and true enhancement features consistently reached substantial levels (≥.68 [95% CI:.61‐.75]). Interrater comparison showed at least moderate agreement (group: ≥.42 [95% CI:.36‐.48], pairwise: ≥.61 [95% CI:.50‐.72]). Among the imaging features in the EPDT, necrosis assessment displayed the highest intra‐ and interrater consistency (≥.80 [95% CI:.73‐.88]). Conclusion: The proposed EPDT has high accuracy in predicting enhancement patterns of gliomas irrespective of rater experience. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
8. Renal Cystic Echinococcosis: Long-Term Outcomes of Percutaneous Treatment
- Author
-
Ciftci, Turkmen Turan, Unal, Emre, Azizova, Aynur, Ayyildiz, Veysel Atilla, Akinci, Devrim, and Akhan, Okan
- Published
- 2021
- Full Text
- View/download PDF
9. Ten Years of VASARI Glioma Features: Systematic Review and Meta-Analysis of Their Impact and Performance.
- Author
-
Azizova, Aynur, Prysiazhniuk, Yeva, Wamelink, Ivar J. H. G., Petr, Jan, Barkhof, Frederik, and Keil, Vera C.
- Published
- 2024
- Full Text
- View/download PDF
10. Repeat Resection for Recurrent Glioblastoma in the WHO 2021 Era: A Prospective Matched Case-Control Study
- Author
-
Askun, Melike Mut, primary, Zengin, Yagmur, additional, Azizova, Aynur, additional, Karli-Oguz, Kader, additional, Saydam, Okay, additional, Strobel, Thomas, additional, and Soylemezoglu, Figen, additional
- Published
- 2024
- Full Text
- View/download PDF
11. Brain Tumor Imaging without Gadolinium-based Contrast Agents: Feasible or Fantasy?
- Author
-
Wamelink, Ivar J. H. G., primary, Azizova, Aynur, additional, Booth, Thomas C., additional, Mutsaerts, Henk J. M. M., additional, Ogunleye, Afolabi, additional, Mankad, Kshitij, additional, Petr, Jan, additional, Barkhof, Frederik, additional, and Keil, Vera C., additional
- Published
- 2024
- Full Text
- View/download PDF
12. Correction to: Persistent left superior vena cava: clinical importance and differential diagnoses
- Author
-
Azizova, Aynur, Onder, Omer, Arslan, Sevtap, Ardali, Selin, and Hazirolan, Tuncay
- Published
- 2021
- Full Text
- View/download PDF
13. Errors, discrepancies and underlying bias in radiology with case examples: a pictorial review
- Author
-
Onder, Omer, Yarasir, Yasin, Azizova, Aynur, Durhan, Gamze, Onur, Mehmet Ruhi, and Ariyurek, Orhan Macit
- Published
- 2021
- Full Text
- View/download PDF
14. Persistent left superior vena cava: clinical importance and differential diagnoses
- Author
-
Azizova, Aynur, Onder, Omer, Arslan, Sevtap, Ardali, Selin, and Hazirolan, Tuncay
- Published
- 2020
- Full Text
- View/download PDF
15. Imaging findings and classification of the common and uncommon male breast diseases
- Author
-
Önder, Ömer, Azizova, Aynur, Durhan, Gamze, Elibol, Funda Dinç, Akpınar, Meltem Gülsün, and Demirkazık, Figen
- Published
- 2020
- Full Text
- View/download PDF
16. Flow diverter stents in the treatment of recanalized intracranial aneurysms
- Author
-
Akgul, Erol, primary, Onan, Hasan Bilen, additional, Islek, Irem, additional, Tonge, Mehmet, additional, Durmus, Yavuz, additional, Barburoglu, Mehmet, additional, Azizova, Aynur, additional, Erol, Cengiz, additional, Hakyemez, Bahattin, additional, Sencer, Serra, additional, Aydin, Kubilay, additional, and Arat, Anil, additional
- Published
- 2021
- Full Text
- View/download PDF
17. Investigation of the relationship between CE cyst characteristics and genetic diversity of Echinococcus granulosus sensu lato in humans from Turkey
- Author
-
Örsten, Serra, primary, Çiftçi, Türkmen, additional, Azizova, Aynur, additional, Yüce, Gökhan, additional, Uysal, Aycan, additional, İmamoğlu, Çetin, additional, Karaağaoğlu, Ergun, additional, Akıncı, Devrim, additional, Akyön, Yakut, additional, Casulli, Adriano, additional, and Akhan, Okan, additional
- Published
- 2020
- Full Text
- View/download PDF
18. Ultrasonography Findings of Breast Microcalcifications without Accompanying Mass and Evaluation of Ultrasound-Guided Biopsy Results
- Author
-
Durhan, Gamze, primary, Önder, Ömer, primary, Azizova, Aynur, primary, Karakaya, Jale, primary, Kösemehmetoğlu, Kemal, primary, Akpınar, Meltem, primary, and Demirkazık, Figen, primary
- Published
- 2020
- Full Text
- View/download PDF
19. Everything you need to know about thickening of the tracheal wall
- Author
-
Azizova, Aynur
- Subjects
genetic structures ,Neoplasia ,education ,Mediastinum ,Thorax ,Infection ,Imaging sequences ,Trauma ,Respiratory system ,CT - Abstract
Learning objectives Background Findings and procedure details Conclusion Personal information References, Learning objectives: To review the reasons of thickening of the tracheal wall with a systematic approach. To be familiar with the imaging findings of the tracheal wall diseases. To be able to differentiate tracheal tumors from tumorlike...
- Published
- 2019
- Full Text
- View/download PDF
20. Imaging Findings and Clinicopathological Correlation of Breast Cancer in Women under 40 Years Old.
- Author
-
Durhan, Gamze, Azizova, Aynur, Önder, Ömer, Kösemehmetoğlu, Kemal, Karakaya, Jale, Akpınar, Meltem Gülsün, Demirkazık, Figen, and Üner, Ayşegül
- Subjects
- *
BREAST cancer diagnosis , *BREAST cancer treatment , *HISTOPATHOLOGY , *MAGNETIC resonance imaging , *ULTRASONIC imaging - Abstract
Objective: The aim of this study was to evaluate the clinical, imaging and histopathological features of breast cancer in patients aged under 40 years of age. The relationship between radiological characteristics and histopathological features was also investigated. Materials and Methods: The study included 131 patients aged under 40 years, diagnosed pathologically with breast cancer. A retrospective evaluation was made of the imaging and clinicopathological findings and the relationship between pathological and imaging findings was investigated. Results: Most of the cancers were detected from clinical symptoms, especially a palpable mass (76.3%). The most common histological type of tumor was invasive ductal carcinoma and 64.8% of the tumors were high grade tumors. The predominant features were irregular borders (92.4%), microlobulated-angulated contours (43.5%), hypo-homogeneous internal echogenicity (80.9%) on ultrasonography, and the presence of a mass (41.2%) and suspicious microcalcifications (40.2%) on mammography. Magnetic resonance imaging commonly showed mass enhancement (66.7%) with type 2 or 3 dynamic curve (92.6%). High-grade tumors were associated with posterior acoustic enhancement (p: 0.03) while low-grade tumors presented with spiculated margins more than high grade tumors (p: 0.04). Conclusion: Breast cancer in women aged under 40 years usually presents with a self-detected palpable mass and can show different imaging findings according to the histological grade. Ultrasonography is the main modality for the diagnosis of breast cancer in young women, but mammography and magnetic resonance imaging can help in both diagnosis and evaluation of the extent of disease. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
21. Can Radiologist and Pathologist Reach The Truth Together in The Diagnosis of Benign Fibroepithelial Lesions?
- Author
-
Durhan, Gamze, Önder, Ömer, Azizova, Aynur, Karakaya, Jale, Kösemehmetoğlu, Kemal, Akpınar, Meltem Gülsün, and Demirkazık, Figen
- Subjects
FIBROEPITHELIAL tumors ,CORE needle biopsy ,FIBROADENOMAS ,PHYLLODES tumors ,RADIOLOGY - Abstract
Objective: Benign fibroepithelial lesions (BFL) lesions of the breast are various and predominantly benign, although a few can be locally aggressive. Definitive diagnosis of some BFL can be challenging from core needle biopsy (CNB). Radiological findings can help guide the management of the lesions. The aim of this study was to investigate the accuracy rate of CNB results and evaluate the radiological findings of the most common BFL according to the final excision pathology results. The secondary aim was to assess the contribution of the imaging findings to CNB results. Materials and Methods: A retrospective review was made of 266 patients diagnosed with suspicious BFL, conventional fibroadenoma, complex fibroadenoma, cellular fibroadenoma and benign phyllodes tumor (PT). The study included 132 patients who underwent surgical excision. The radiological and histopathological findings were evaluated. Results: While 66 patients were diagnosed with more descriptive results on CNB, the other 66 patients were diagnosed with suspicious BFL. Agreement between CNB and excisional pathology was good, when CNB provided a definite diagnosis. While conventional and complex fibroadenoma were observed to have hypo or normal vascularity, cellular fibroadenoma and PT showed hypervascularity. Oval shaped and homogeneous internal echo pattern were significantly associated with conventional fibroadenoma. A heterogeneous internal echo pattern was seen in complex fibroadenomas and PT. Conclusion: CNB often reaches the correct diagnosis alone when it gives a definite diagnosis. The radiological findings which help in the differentiation of BFL are hypervascularity, oval shape and internal heterogeneity. More accurate results can be obtained when histopathological and radiological findings are evaluated together. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
22. The Brain Tumor Segmentation - Metastases (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI.
- Author
-
Moawad AW, Janas A, Baid U, Ramakrishnan D, Saluja R, Ashraf N, Maleki N, Jekel L, Yordanov N, Fehringer P, Gkampenis A, Amiruddin R, Manteghinejad A, Adewole M, Albrecht J, Anazodo U, Aneja S, Anwar SM, Bergquist T, Chiang V, Chung V, Conte GM, Dako F, Eddy J, Ezhov I, Khalili N, Farahani K, Iglesias JE, Jiang Z, Johanson E, Kazerooni AF, Kofler F, Krantchev K, LaBella D, Van Leemput K, Li HB, Linguraru MG, Liu X, Meier Z, Menze BH, Moy H, Osenberg K, Piraud M, Reitman Z, Shinohara RT, Wang C, Wiestler B, Wiggins W, Shafique U, Willms K, Avesta A, Bousabarah K, Chakrabarty S, Gennaro N, Holler W, Kaur M, LaMontagne P, Lin M, Lost J, Marcus DS, Maresca R, Merkaj S, Cassinelli Pedersen G, von Reppert M, Sotiras A, Teytelboym O, Tillmans N, Westerhoff M, Youssef A, Godfrey D, Floyd S, Rauschecker A, Villanueva-Meyer J, Pflüger I, Cho J, Bendszus M, Brugnara G, Cramer J, Perez-Carillo GJG, Johnson DR, Kam A, Kwan BYM, Lai L, Lall NU, Memon F, Krycia M, Patro SN, Petrovic B, So TY, Thompson G, Wu L, Schrickel EB, Bansal A, Barkhof F, Besada C, Chu S, Druzgal J, Dusoi A, Farage L, Feltrin F, Fong A, Fung SH, Gray RI, Ikuta I, Iv M, Postma AA, Mahajan A, Joyner D, Krumpelman C, Letourneau-Guillon L, Lincoln CM, Maros ME, Miller E, Morón FEA, Nimchinsky EA, Ozsarlak O, Patel U, Rohatgi S, Saha A, Sayah A, Schwartz ED, Shih R, Shiroishi MS, Small JE, Tanwar M, Valerie J, Weinberg BD, White ML, Young R, Zohrabian VM, Azizova A, Brüßeler MMT, Ghonim M, Ghonim M, Okar A, Pasquini L, Sharifi Y, Singh G, Sollmann N, Soumala T, Taherzadeh M, Vollmuth P, Foltyn-Dumitru M, Malhotra A, Abayazeed AH, Dellepiane F, Lohmann P, Pérez-García VM, Elhalawani H, de Verdier MC, Al-Rubaiey S, Armindo RD, Ashraf K, Asla MM, Badawy M, Bisschop J, Lomer NB, Bukatz J, Chen J, Cimflova P, Corr F, Crawley A, Deptula L, Elakhdar T, Shawali IH, Faghani S, Frick A, Gulati V, Haider MA, Hierro F, Dahl RH, Jacobs SM, Hsieh KJ, Kandemirli SG, Kersting K, Kida L, Kollia S, Koukoulithras I, Li X, Abouelatta A, Mansour A, Maria-Zamfirescu RC, Marsiglia M, Mateo-Camacho YS, McArthur M, McDonnell O, McHugh M, Moassefi M, Morsi SM, Munteanu A, Nandolia KK, Naqvi SR, Nikanpour Y, Alnoury M, Nouh AMA, Pappafava F, Patel MD, Petrucci S, Rawie E, Raymond S, Roohani B, Sabouhi S, Sanchez-Garcia LM, Shaked Z, Suthar PP, Altes T, Isufi E, Dhemesh Y, Gass J, Thacker J, Tarabishy AR, Turner B, Vacca S, Vilanilam GK, Warren D, Weiss D, Worede F, Yousry S, Lerebo W, Aristizabal A, Karargyris A, Kassem H, Pati S, Sheller M, Link KEE, Calabrese E, Tahon NH, Nada A, Velichko YS, Bakas S, Rudie JD, and Aboian M
- Abstract
The translation of AI-generated brain metastases (BM) segmentation into clinical practice relies heavily on diverse, high-quality annotated medical imaging datasets. The BraTS-METS 2023 challenge has gained momentum for testing and benchmarking algorithms using rigorously annotated internationally compiled real-world datasets. This study presents the results of the segmentation challenge and characterizes the challenging cases that impacted the performance of the winning algorithms. Untreated brain metastases on standard anatomic MRI sequences (T1, T2, FLAIR, T1PG) from eight contributed international datasets were annotated in stepwise method: published UNET algorithms, student, neuroradiologist, final approver neuroradiologist. Segmentations were ranked based on lesion-wise Dice and Hausdorff distance (HD95) scores. False positives (FP) and false negatives (FN) were rigorously penalized, receiving a score of 0 for Dice and a fixed penalty of 374 for HD95. The mean scores for the teams were calculated. Eight datasets comprising 1303 studies were annotated, with 402 studies (3076 lesions) released on Synapse as publicly available datasets to challenge competitors. Additionally, 31 studies (139 lesions) were held out for validation, and 59 studies (218 lesions) were used for testing. Segmentation accuracy was measured as rank across subjects, with the winning team achieving a LesionWise mean score of 7.9. The Dice score for the winning team was 0.65 ± 0.25. Common errors among the leading teams included false negatives for small lesions and misregistration of masks in space. The Dice scores and lesion detection rates of all algorithms diminished with decreasing tumor size, particularly for tumors smaller than 100 mm3. In conclusion, algorithms for BM segmentation require further refinement to balance high sensitivity in lesion detection with the minimization of false positives and negatives. The BraTS-METS 2023 challenge successfully curated well-annotated, diverse datasets and identified common errors, facilitating the translation of BM segmentation across varied clinical environments and providing personalized volumetric reports to patients undergoing BM treatment., Competing Interests: Conflicts of Interest No conflicts of interest to disclose.
- Published
- 2024
23. Ten Years of VASARI Glioma Features: Systematic Review and Meta-Analysis of Their Impact and Performance.
- Author
-
Azizova A, Prysiazhniuk Y, Wamelink IJHG, Petr J, Barkhof F, and Keil VC
- Subjects
- Humans, Magnetic Resonance Imaging, Brain Neoplasms diagnostic imaging, Brain Neoplasms genetics, Brain Neoplasms mortality, Brain Neoplasms pathology, Glioma diagnostic imaging, Glioma genetics, Glioma pathology, Glioma mortality
- Abstract
Background: Visually Accessible Rembrandt (Repository for Molecular Brain Neoplasia Data) Images (VASARI) features, a vocabulary to establish reproducible terminology for glioma reporting, have been applied for a decade, but a systematic performance evaluation is lacking., Purpose: Our aim was to conduct a systematic review and meta-analysis of the performance of the VASARI features set for glioma assessment., Data Sources: MEDLINE, Web of Science, EMBASE, and the Cochrane Library were systematically searched until September 26, 2023., Study Selection: Original articles predicting diagnosis, progression, and survival in patients with glioma were included., Data Analysis: The modified Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2) tool was applied to evaluate the risk-of-bias. The meta-analysis used a random effects model and forest plot visualizations, if ≥5 comparable studies with a low or medium risk of bias were provided., Data Synthesis: Thirty-five studies (3304 patients) were included. Risk-of-bias scores were medium ( n = 33) and low ( n = 2). Recurring objectives were overall survival ( n = 18) and isocitrate dehydrogenase mutation ( IDH ; n = 12) prediction. Progression-free survival was examined in 7 studies. In 4 studies (glioblastoma n = 2, grade 2/3 glioma n = 1, grade 3 glioma n = 1), a significant association was found between progression-free survival and single VASARI features. The single features predicting overall survival with the highest pooled hazard ratios were multifocality (hazard ratio = 1.80; 95%-CI, 1.21-2.67; I
2 = 53%), ependymal invasion (hazard ratio = 1.73; 95% CI, 1.45-2.05; I2 = 0%), and enhancing tumor crossing the midline (hazard ratio = 2.08; 95% CI, 1.35-3.18; I2 = 52%). IDH mutation-predicting models combining VASARI features rendered a pooled area under the receiver operating characteristic curve of 0.82 (95% CI, 0.76-0.88) at considerable heterogeneity (I2 = 100%). Combined input models using VASARI plus clinical and/or radiomics features outperformed single data-type models in all relevant studies ( n = 17)., Limitations: Studies were heterogeneously designed and often with a small sample size. Several studies used The Cancer Imaging Archive database, with likely overlapping cohorts. The meta-analysis for IDH was limited due to a high study heterogeneity., Conclusions: Some VASARI features perform well in predicting overall survival and IDH mutation status, but combined models outperform single features. More studies with less heterogeneity are needed to increase the evidence level., (© 2024 by American Journal of Neuroradiology.)- Published
- 2024
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.