In Indonesia, priority setting questions have arisen in the context of HIV/AIDS control as it faces one of Asia's fastest growing HIV/AIDS epidemics and resources are scarce. In 2013, an estimated 610,000 people were living with HIV/AIDS (PLWHA) and it is estimated that this number will increase to 1,500,000 by 2020 if the right measures are not taken (1;2). While the government seems to have the epidemic among people who inject drugs (PWID) under control, the prevalence is increasing among female sex workers (FSW) and their clients, men having sex with men (MSM), and the general population. The budget for HIV/AIDS control is far from sufficient; in 2010, only US$ 69 million was spent on HIV/AIDS, while US$ 152 million was estimated to be needed (3;4). Both issues urge for a wise choice between HIV/AIDS interventions and allocation of resources. Based on the National AIDS Spending Assessment, most resources on national level were spent on curative services (36 percent compared with 28 percent on preventive services) in 2012 (5). At provincial and district level, the allocation of domestic resources is poorly reported and the process of priority setting of interventions could be improved (6). The AIDS commissions (established at national, provincial and district level) is challenged to coordinate the HIV/AIDS response among multiple stakeholders. It aims to develop strategic plans to guide the local planning board on how to allocate the local budget among different government offices. However, the involvement of stakeholders opinion in the strategic planning process could be improved. Also, while various criteria seemed to guide the HIV/AIDS priorities in Indonesia (for example, the impact of interventions on the HIV/AIDS epidemic, adherence to national guidelines and cultural and political acceptability) these remain implicit. Systematic analysis of how different stakeholders value the importance of various criteria could contribute to more systematic, transparent, and accountable priority setting of the HIV/AIDS response and thereby improve the allocation of resources. Most methods that were introduced to guide resource allocation decisions in health (that is, evidence-based medicine, cost-effectiveness analysis, burden of disease, and equity analysis, rely on one single criteria (mostly cost and cost-effectiveness), while in reality many criteria can play a role (for example, feasibility, equity, cultural, and political factors) (7). Therefore, multi-criteria decision analysis (MCDA) is put forward as one of the most important methods for priority setting, and it provides a systematic process for clarifying what is being taken into account (the “criteria”), how each of those criteria should be measured, and how much importance (“weight”) to put on each (7). It has been successful in various case studies, for example in Ghana, Nepal, and Thailand, where it contributed to transparent and accountable policy making and brought a step forward in rational decision making. However, only a few empirical priority setting studies have included the views of different stakeholders, such as patients and the general population, besides those of policy makers (8;9). In HIV/AIDS field, the recognition of multiple criteria has risen and is reflected in the WHO programmatic guidance for antiretroviral therapy (ART) that recommends taking besides health impact also equity and feasibility criteria into consideration (10). However, only a few studies have tried to measure explicitly the importance of multiple criteria for HIV/AIDS priority setting (11;12) and worldwide, the main focus remains on how to reduce new infections and AIDS related death. Against this background, this study aims to describe the views of multiple stakeholders on the importance of various criteria for priority setting in HIV/AIDS control in Indonesia.