24 results on '"Agaram N"'
Search Results
2. Adenosquamous Carcinoma of the Pancreas: A Multi-Institutional Study
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Matos, J., primary, Grützmann, R., additional, Turrini, O., additional, Agaram, N., additional, Lillemoe, K.D., additional, and Schmidt, M., additional
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- 2010
- Full Text
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3. Novel Kinase Mutations in KDR/VEGFR2, TIE1, and SNRK in Angiosarcoma (AS) Patients
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Antonescu, C. R., Yoshida, A., Agaram, N. P., Chang, N. E., and Robert G. Maki
4. PD-LI expression and immune infiltrates in sarcoma
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D Angelo, S. P., Alexander Shoushtari, Agaram, N. P., Kuk, D., Qin, L. X., Carvajal, R. D., Dickson, M. A., Gounder, M. M., Keohan, M. L., Schwartz, G. K., and Tap, W. D.
5. BRAF mutations are present in a subset of small bowel gastrointestinal stromal tumors (GISTs)
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Agaram, N. P., Wong, G. C., Tianhua Guo, Besmer, P., and Antonescu, C. R.
6. Genomic and functional analysis of myxofibrosarcoma identifies HGF/MET and integrin alpha 10 as potential prognostic biomarkers and novel therapeutic targets
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Lee, A. Y., Agaram, N. P., Qin, L., Crago, A. M., Rachael O'Connor, Socci, N. D., Okada, T., and Singer, S.
7. Comparative gene expression profiling of chordoma and chondrosarcoma
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Agaram, N., Schwab, J., Boland, P., Socci, N., Tianhua Guo, Doty, S., Ferrone, S., Healey, J., and Antonescu, C.
8. Detection of GRM1 gene rearrangements in chondromyxoid fibroma: a comparison of fluorescence in-situ hybridisation, RNA sequencing and immunohistochemical analysis.
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Torrence D, Dermawan JK, Zhang Y, Vanderbilt C, Hwang S, Mullaney K, Jungbluth A, Rao M, Gao K, Sukhadia P, Linos K, Agaram N, and Hameed M
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- Humans, Female, Adult, Male, Young Adult, Adolescent, Fibroma genetics, Fibroma pathology, Fibroma diagnosis, Fibroma metabolism, Middle Aged, Biomarkers, Tumor genetics, Biomarkers, Tumor analysis, In Situ Hybridization, Fluorescence, Immunohistochemistry methods, Receptors, Metabotropic Glutamate genetics, Receptors, Metabotropic Glutamate metabolism, Sequence Analysis, RNA, Gene Rearrangement, Bone Neoplasms genetics, Bone Neoplasms pathology, Bone Neoplasms diagnosis, Bone Neoplasms metabolism
- Abstract
Aims: Chondromyxoid fibroma (CMF) is a rare, benign bone tumour which arises primarily in young adults and is occasionally diagnostically challenging. Glutamate metabotropic receptor 1 (GRM1) gene encodes a metabotropic glutamate receptor and was recently shown to be up-regulated in chondromyxoid fibroma through gene fusion and promoter swapping. The aim of this study was to interrogate cases of CMF for the presence of GRM1 gene rearrangements, gene fusions and GRM1 protein overexpression., Methods and Results: Selected cases were subjected to testing by fluorescent in-situ hybridisation (FISH) with a GRM1 break-apart probe, a targeted RNA sequencing method and immunohistochemical study with an antibody to GRM1 protein. Two cases were subjected to whole transcriptomic sequencing. In 13 of 13 cases, GRM1 protein overexpression was detected by immunohistochemistry using the GRM1 antibody. Of the 12 cases successfully tested by FISH, nine of 12 showed GRM1 rearrangements by break-apart probe assay. Targeted RNA sequencing analysis did not detect gene fusions in any of the eight cases tested, but there was an increase in GRM1 mRNA expression in all eight cases. Two cases subjected to whole transcriptomic sequencing (WTS) showed elevated GRM1 expression and no gene fusions., Conclusion: GRM1 gene rearrangements can be detected using FISH break-apart probes in approximately 75% of cases, and immunohistochemical detection of GRM1 protein over-expression is a sensitive diagnostic method. The gene fusion was not detected by targeted RNA sequencing, due most probably to the complexity of fusion mechanism, and is not yet a reliable method for confirming a diagnosis of CMF in the clinical setting., (© 2024 John Wiley & Sons Ltd.)
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- 2024
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9. Cytopathologic features of epithelioid hemangioendothelioma including touch imprints for rapid on-site evaluation.
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Lahori M, Dehghani A, Wilson C, Law W, Agaram N, Murali R, and Sigel C
- Abstract
Objectives: Epithelioid hemangioendothelioma (EHE) is a vascular tumor of intermediate malignant potential, which presents as infiltrative lesions involving multiple organs. We reviewed our institutional experience with the cytologic diagnosis of this neoplasm including the performance of rapid on-site evaluation (ROSE)., Material and Methods: From our institutional database, we identified 29 cytology specimens, obtained between 2012 and 2020, from 21 patients with biopsy confirmation of EHE. ROSE and final diagnosis were compared. All cytology slides were reviewed, and selected cytologic features were recorded., Results: The cohort included 29 specimens comprising 17 (59%) from liver, 6 (21%) from lung, 2 (7%) from lymph node, and 4 (14%) from other sites. At ROSE, 8/27 (30%) were reported inadequate, yet on review, all cases contained scattered cells typical of EHE in the touch imprint air-dried slides including two cases reported with a final diagnosis of non-diagnostic. All cases contained epithelioid and plasmacytoid cells with ovoid nuclei, fine chromatin, delicate (or biphasic) cytoplasm, and scattered cells with delicate, elongated cytoplasmic tails. The majority 26/29 (90%) of cases had multi-nucleated and multi-lobated nuclei. Intracytoplasmic lumens/blister cells were in 17/29 (59%), and a subset had erythrocytes therein (4/29, 14%). Metachromatic fibromyxoid or fibrotic stroma fragments were commonly seen (23/29, 79%). Mitoses and necrosis were absent in all cases. Of 11 tested cases, WWTR1::CAMTA1 and YAP1::TFE3 fusions were detected in nine and two cases, respectively., Conclusion: EHE has distinctive cytologic features which are often under-recognized during ROSE., Competing Interests: The authors have no conflicts of interest or financial disclosures., (© 2023 Cytopathology Foundation Inc, Published by Scientific Scholar.)
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- 2023
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10. Diagnostic features of low- and high-grade mucinous neoplasms in pancreatic cyst FNA cytology.
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Sigel C, Wei XJ, Agaram N, Sigel K, Raza R, Andrade R, Rao R, Shah P, Soares K, and Goyal A
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- Humans, Biopsy, Fine-Needle, Mucins, Cyst Fluid, Neoplasms, Cystic, Mucinous, and Serous, Pancreatic Cyst diagnosis, Pancreatic Cyst pathology, Pancreatic Neoplasms diagnosis, Pancreatic Neoplasms pathology
- Abstract
Background: Pancreatic cyst cytology evaluates for neoplastic mucin and epithelial grade. This study describes cytological features of low- and high-grade mucinous neoplasms (MNs) using gastrointestinal contaminants for comparison., Methods: Histologically confirmed pancreatic cystic neoplasms were reviewed by a panel of cytopathologists to identify which, among 26 selected cytologic features, correlate significantly with low- and high-grade MN. A test for greater than or equal to four of eight high-grade features (three-dimensional architecture, high nuclear:cytoplasmic ratio, moderate nuclear membrane abnormalities, loss of nuclear polarity, hyperchromasia, >4:1 nuclear size variation in one cluster, karyorrhexis, and necrosis) was assessed for identifying a high-grade neoplasms. Additional characteristics of the cohort such as cyst fluid carcinoembryonic antigen results, molecular testing, Papanicolaou Society of Cytopathology classification, and select high-risk clinical features are described., Results: Endoscopic ultrasound fine-needle aspirations from 134 MN and 17 serous cystadenomas containing gastrointestinal contaminants were included. The MN consisted of 112 (84%) intraductal papillary MNs (low-grade = 69, 62%; high-grade = 24, 21%; and invasive = 19, 17%) and mucinous cystic neoplasms (low-grade = 20, 90%; high-grade = 2, 10%). Half had greater than five clusters of epithelium for analysis. Compared with gastrointestinal contaminants, mucin from MN was thick and colloid-like (40% vs. 6%, p < .01), covered >20% of the smear area (32% vs. none, p < .01), and contained histiocytes (46% vs. 18%, p = .04). Greater than or equal to four of eight select high-grade features was present in 36% of high-grade MN with sensitivity 37% and 98% specificity., Conclusion: Colloid-like features, >20% of smear, and histiocytes correlated with MN. Testing for greater than or equal to four high-grade features had low sensitivity and high specificity for high-grade MN., (© 2023 American Cancer Society.)
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- 2023
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11. A Phase Ib/II Randomized Study of RO4929097, a Gamma-Secretase or Notch Inhibitor with or without Vismodegib, a Hedgehog Inhibitor, in Advanced Sarcoma.
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Gounder MM, Rosenbaum E, Wu N, Dickson MA, Sheikh TN, D'Angelo SP, Chi P, Keohan ML, Erinjeri JP, Antonescu CR, Agaram N, Hameed MR, Martindale M, Lefkowitz RA, Crago AM, Singer S, Tap WD, Takebe N, Qin LX, and Schwartz GK
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- Amyloid Precursor Protein Secretases, Anilides adverse effects, Benzazepines, Fluorocarbons, Humans, Pyridines, Hedgehog Proteins, Sarcoma
- Abstract
Purpose: Because the Hedgehog and Notch pathways are often overexpressed in mesenchymal malignancies, we evaluated the efficacy of concurrent inhibition of Notch and Hedgehog signaling using the gamma-secretase inhibitor (GSI) RO4929097 and the smoothened antagonist vismodegib in unresectable or metastatic sarcoma., Patients and Methods: In this investigator-initiated trial, phase Ib used standard 3+3 dose escalation in which patients first received vismodegib once daily for 21 days, followed by the combination of RO4929097 concurrently with vismodegib in 21-day cycles. In phase II, patients were randomized to RO4929097 alone or in combination with vismodegib., Results: Nine patients were treated in phase Ib with no dose-limiting toxicities. RO4929097 at 15 mg daily in combination with 150 mg daily of vismodegib was declared the recommended phase II dose. Most adverse events were grade ≤ 2. In phase II (closed early due to discontinuation of RO4929097 evaluation), 34 patients were randomized to RO4929097 alone and 33 to RO4929097 plus vismodegib. RO4929097 did not interfere with the steady-state concentration of vismodegib, while vismodegib reduced the plasma concentration of RO492909. No patients had an objective response. Neither progression-free nor overall survival differed significantly between treatment arms. Paired tumor biopsies from a subset of patients demonstrated inhibition of cleaved Notch., Conclusions: The combination of RO4929097 plus vismodegib was generally well tolerated. Although accrual to this study was not completed, vismodegib did not meaningfully enhance the clinical efficacy of RO4929097 in an unplanned analysis. GSIs and GSIs plus vismodegib can inhibit intratumoral Notch and downstream phosphorylated Akt signaling., (©2022 American Association for Cancer Research.)
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- 2022
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12. Myositis ossificans-like soft tissue aneurysmal bone cyst: a clinical, radiological, and pathological study of seven cases with COL1A1-USP6 fusion and a novel ANGPTL2-USP6 fusion.
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Zhang L, Hwang S, Benayed R, Zhu GG, Mullaney KA, Rios KM, Sukhadia PY, Agaram N, Zhang Y, Bridge JA, Healey JH, Athanasian EA, and Hameed M
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- Adolescent, Adult, Angiopoietin-Like Protein 2, Bone Cysts, Aneurysmal genetics, Collagen Type I, alpha 1 Chain, Female, Gene Fusion, Humans, Male, Middle Aged, Young Adult, Angiopoietin-like Proteins genetics, Bone Cysts, Aneurysmal pathology, Collagen Type I genetics, Myositis Ossificans genetics, Myositis Ossificans pathology, Ubiquitin Thiolesterase genetics
- Abstract
Herein we described the clinical, radiological, histological, and molecular characteristics of seven soft tissue aneurysmal bone cysts (STABCs) diagnosed and managed at a tertiary cancer center and to elucidate their relationship with myositis ossificans (MO). All cases had established imaging and histopathological diagnosis of STABC and were subject to fluorescence in situ hybridization (FISH) for USP6 rearrangement and Archer® FusionPlex® targeted RNA sequencing (RNASeq) analysis to identify the fusion partner. A thorough literature review of STABC and MO was conducted. The patients presented with painful masses unpreceded by trauma, occurring most commonly in the deep soft tissue of the thigh/gluteus (4/7), and also in the supraclavicular region, the axilla, and the hand. On imaging, the lesions were frequently associated with peripheral calcification on conventional radiographs and CT (6/7), cystic components on ultrasound, as well as perilesional edema (7/7) and fluid levels (3/7) on MRI. Bone scan (1/1) showed intense radiotracer uptake. Histologically, 6/7 cases demonstrated zonal arrangements reminiscent of MO. USP6 rearrangement was found in all seven cases by FISH and/or RNASeq. RNASeq further detected COL1A1-USP6 fusion in six cases and a novel ANGPTL2-USP6 fusion in one case. Four patients underwent resection of the tumors and were disease free at their last follow-up. Three patients who underwent incisional or needle biopsies had no evidence of disease progression on imaging studies. In conclusion, the clinical, radiological, and pathological overlap between STABC and MO suggests that they are closely related entities. A novel fusion ANGPTL2-USP6 is associated with distinct clinical and pathological presentation.
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- 2020
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13. Genomic Profiling Identifies Association of IDH1/IDH2 Mutation with Longer Relapse-Free and Metastasis-Free Survival in High-Grade Chondrosarcoma.
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Zhu GG, Nafa K, Agaram N, Zehir A, Benayed R, Sadowska J, Borsu L, Kelly C, Tap WD, Fabbri N, Athanasian E, Boland PJ, Healey JH, Berger MF, Ladanyi M, and Hameed M
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- Adolescent, Adult, Aged, Bone Neoplasms genetics, Bone Neoplasms secondary, Chondrosarcoma genetics, Chondrosarcoma pathology, Cyclin-Dependent Kinase Inhibitor p16 genetics, Female, Genomics, High-Throughput Nucleotide Sequencing methods, Humans, Male, Middle Aged, Neoplasm Grading, Neoplasm Metastasis, Neoplasm Recurrence, Local genetics, Neoplasm Recurrence, Local pathology, Survival Rate, Telomerase genetics, Tumor Suppressor Protein p53 genetics, Young Adult, Biomarkers, Tumor genetics, Bone Neoplasms mortality, Chondrosarcoma mortality, Isocitrate Dehydrogenase genetics, Mutation, Neoplasm Recurrence, Local mortality
- Abstract
Purpose: Chondrosarcomas are the second most common primary malignant bone tumors. Although histologic grade is the most important factor predicting the clinical outcome of chondrosarcoma, it is subject to interobserver variability. Isocitrate dehydrogenase 1 ( IDH1 ) and IDH2 hotspot mutations were recently found to be frequently mutated in central chondrosarcomas. However, a few published articles have been controversial regarding the association between IDH1/IDH2 mutation status and clinical outcomes in chondrosarcomas., Experimental Design: We performed hotspot sequencing of IDH1 and IDH2 genes in 89 central chondrosarcomas and targeted next-generation sequencing in 54 of them, and then correlated the IDH1/IDH2 mutation status with the patient's clinical outcome., Results: Although no association was discovered between IDH mutation status and the patient's overall survival, IDH1 / IDH2 mutation was found to be associated with longer relapse-free and metastasis-free survival in high-grade chondrosarcomas. Genomic profiling reveals TERT gene amplification and ATRX mutation, for the first time, in addition to TERT promoter mutation in a subset (6/30, 20%) of high-grade and dedifferentiated chondrosarcomas. These abnormalities in telomere genes are concurrent with IDH1 / IDH2 mutation and with CDKN2A/2B deletion or TP53 mutation, suggesting a possible association and synergy among these genes in chondrosarcoma progression. We found 21% of patients with chondrosarcoma also had histories of second malignancies unrelated to cartilaginous tumors, suggesting possible unknown genetic susceptibility to chondrosarcoma., Conclusions: IDH1/IDH2 mutations are associated with longer relapse-free and metastasis-free survival in high-grade chondrosarcomas, and they tend to co-occur with TERT mutations and with CDKN2A/2B and TP53 alterations in a subset of high-grade chondrosarcomas., (©2019 American Association for Cancer Research.)
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- 2020
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14. Integrin-α10 Dependency Identifies RAC and RICTOR as Therapeutic Targets in High-Grade Myxofibrosarcoma.
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Okada T, Lee AY, Qin LX, Agaram N, Mimae T, Shen Y, O'Connor R, López-Lago MA, Craig A, Miller ML, Agius P, Molinelli E, Socci ND, Crago AM, Shima F, Sander C, and Singer S
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- Animals, Cell Line, Tumor, Fibrosarcoma drug therapy, Fibrosarcoma metabolism, Fibrosarcoma pathology, Gene Expression Profiling, Gene Expression Regulation, Neoplastic, Guanine Nucleotide Exchange Factors genetics, Humans, Integrin alpha Chains metabolism, Mice, Molecular Targeted Therapy, Neoplasm Grading, Neoplasm Transplantation, Protein Serine-Threonine Kinases genetics, Proto-Oncogene Proteins c-akt genetics, Rapamycin-Insensitive Companion of mTOR Protein, Signal Transduction, TOR Serine-Threonine Kinases genetics, Up-Regulation, Carrier Proteins genetics, Fibrosarcoma genetics, Integrin alpha Chains genetics, rac GTP-Binding Proteins genetics
- Abstract
Myxofibrosarcoma is a common mesenchymal malignancy with complex genomics and heterogeneous clinical outcomes. Through gene-expression profiling of 64 primary high-grade myxofibrosarcomas, we defined an expression signature associated with clinical outcome. The gene most significantly associated with disease-specific death and distant metastasis was ITGA10 (integrin-α10). Functional studies revealed that myxofibrosarcoma cells strongly depended on integrin-α10, whereas normal mesenchymal cells did not. Integrin-α10 transmitted its tumor-specific signal via TRIO and RICTOR, two oncoproteins that are frequently co-overexpressed through gene amplification on chromosome 5p. TRIO and RICTOR activated RAC/PAK and AKT/mTOR to promote sarcoma cell survival. Inhibition of these proteins with EHop-016 (RAC inhibitor) and INK128 (mTOR inhibitor) had antitumor effects in tumor-derived cell lines and mouse xenografts, and combining the drugs enhanced the effects. Our results demonstrate the importance of integrin-α10/TRIO/RICTOR signaling for driving myxofibrosarcoma progression and provide the basis for promising targeted treatment strategies for patients with high-risk disease., Significance: Identifying the molecular pathogenesis for myxofibrosarcoma progression has proven challenging given the highly complex genomic alterations in this tumor type. We found that integrin-α10 promotes tumor cell survival through activation of TRIO-RAC-RICTOR-mTOR signaling, and that inhibitors of RAC and mTOR have antitumor effects in vivo, thus identifying a potential treatment strategy for patients with high-risk myxofibrosarcoma. Cancer Discov; 6(10); 1148-65. ©2016 AACR.This article is highlighted in the In This Issue feature, p. 1069., Competing Interests: The authors disclose no potential conflicts of interest, (©2016 American Association for Cancer Research.)
- Published
- 2016
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15. Symplastic/pseudoanaplastic giant cell tumor of the bone.
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Sarungbam J, Agaram N, Hwang S, Lu C, Wang L, Healey J, and Hameed M
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- Adult, Denosumab, Female, Humans, Male, Middle Aged, Neoplasm Recurrence, Local, Retrospective Studies, Bone Neoplasms diagnostic imaging, Bone Neoplasms genetics, Giant Cell Tumor of Bone diagnostic imaging, Giant Cell Tumor of Bone genetics, Histones genetics
- Abstract
Objective: Giant cell tumor of bone (GCTB) is a locally aggressive primary bone tumor. Its malignant counterpart is quite rare. Rarely, a conventional GCTB shows marked nuclear atypia, referred to as symplastic/pseudoanaplastic change, which can mimic sarcomatous transformation. Recently, somatic driver mutations of histone H3.3 exclusively in H3F3A have been described in GCTB. We report a series of 9 cases of GCTB with symplastic/pseudoanaplastic change, along with analysis of H3F3A variants., Materials and Methods: Nine cases of GCTB with symplastic change were identified. Clinico-radiological features, morphological features, and immunohistochemical stain for Ki-67 stain were reviewed. H3F3A variants were also analyzed using Sanger sequencing., Results: Histologically, conventional giant cell tumor areas with scattered foci of markedly atypical cells were seen in all of the cases and all showed rare if any Ki-67 labeling. One patient had received denosumab treatment and another radiation therapy. Radiological features were characteristic of conventional GCTB. Mutation in H3F3A (p.Gly34Trp [G34W]) was found in 6 of the 7 cases. Clinical follow-up ranged from 6 to 208 months. Local recurrences were seen in 4 cases (44 %)., Conclusions: GCTB with symplastic/pseudoanaplastic change is an uncommon variant of conventional GCTB, which can mimic primary sarcoma or sarcomatous transformation. These tumors possess the same missense mutation in histone H3.3 as conventional GCTB.
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- 2016
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16. Osteosarcoma With Apparent Ewing Sarcoma Gene Rearrangement.
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Mathias MD, Chou AJ, Meyers P, Shukla N, Hameed M, Agaram N, Wang L, Berger MF, Walsh M, and Kentsis A
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- Adolescent, Calmodulin-Binding Proteins genetics, Diagnosis, Differential, Female, Humans, Osteosarcoma genetics, RNA-Binding Protein EWS, RNA-Binding Proteins genetics, Sarcoma, Ewing genetics, Sequence Analysis, DNA, Tibia pathology, Gene Rearrangement genetics, Osteosarcoma diagnosis, Sarcoma, Ewing diagnosis
- Abstract
Poorly differentiated round cell sarcomas present diagnostic challenges because of their variable morphology and lack of specific immunophenotypic markers. We present a case of a 15-year-old female with a tibial tumor that exhibited features of Ewing-like sarcoma, including apparent rearrangement of the EWSR1 gene. Hybridization capture-based next-generation DNA sequencing showed evidence of complex genomic rearrangements, absence of known pathogenic Ewing-like chromosome translocations, and deletions RB1, PTCH1, and ATRX, supporting the diagnosis of osteosarcoma. This illustrates the potential of clinical genomic profiling to improve diagnosis and enable specifically targeted therapies for cancers with complex pathologies.
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- 2016
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17. Impact of surgery, radiation and systemic therapy on the outcomes of patients with dendritic cell and histiocytic sarcomas.
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Gounder M, Desai V, Kuk D, Agaram N, Arcila M, Durham B, Keohan ML, Dickson MA, D'Angelo SP, Shukla N, Moskowitz C, Noy A, Maki RG, Herrera DA, Sanchez A, Krishnan A, Pourmoussa A, Qin LX, and Tap WD
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- Adult, Aged, Aged, 80 and over, Chemotherapy, Adjuvant, Dendritic Cell Sarcoma, Follicular mortality, Dendritic Cell Sarcoma, Follicular pathology, Dendritic Cell Sarcoma, Interdigitating mortality, Dendritic Cell Sarcoma, Interdigitating pathology, Disease Progression, Disease-Free Survival, Female, Histiocytic Sarcoma mortality, Histiocytic Sarcoma pathology, Humans, Kaplan-Meier Estimate, Male, Middle Aged, Neoplasm Metastasis, New York City, Proportional Hazards Models, Radiotherapy, Adjuvant, Retrospective Studies, Risk Factors, Time Factors, Treatment Outcome, Dendritic Cell Sarcoma, Follicular therapy, Dendritic Cell Sarcoma, Interdigitating therapy, Histiocytic Sarcoma therapy, Neoadjuvant Therapy
- Abstract
Background: Neoplasms of histiocytic and dendritic cell origin, including follicular dendritic cell sarcoma (FDCS), histiocytic sarcoma (HS) and interdigitating dendritic cell sarcoma (IDCS), are extremely rare, and data on their natural history and treatment outcomes are sparse. We evaluated the impact of surgery, radiation and systemic therapies on overall survival (OS)., Methods: We conducted a retrospective chart review of patients with FDCS, IDCS and HS treated at Memorial Sloan Kettering Cancer Center between 1995 and 2014., Results: We identified 31, 15 and 7 patients with FDCS, HS and IDCS, respectively. Median age was 48.7, 42.3 and 58.8years for FDCS, HS and IDCS, respectively. Only a slight disparity in gender distribution existed for FDCS and HS; however, IDCS predominantly affected males (6:1). The most common sites of presentation were abdomen and pelvis (42%), extremities (33%) and head and neck (57%) for FDCS, HS and IDCS, respectively. At diagnosis, 74%, 40% and 86% of patients presented with localised disease in FDCS, HS and IDCS, respectively. Patients with localised disease had significantly improved OS than those with metastatic disease in FDCS (P=0.04) and IDCS (P=0.014) but not in HS (P=0.95). In FDCS and HS, adjuvant or neo-adjuvant therapy was not associated with improved OS compared with observation. In IDCS, surgery alone provided a 5-year overall survival rate of 71%., Conclusions: Adjuvant or neo-adjuvant treatment in FDCS and HS did not affect OS. Patients with IDCS had an excellent outcome with surgery. In the metastatic setting, chemotherapy and small molecule inhibitors may provide benefit., Competing Interests: statement None declared., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
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- 2015
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18. Consistent copy number changes and recurrent PRKAR1A mutations distinguish Melanotic Schwannomas from Melanomas: SNP-array and next generation sequencing analysis.
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Wang L, Zehir A, Sadowska J, Zhou N, Rosenblum M, Busam K, Agaram N, Travis W, Arcila M, Dogan S, Berger MF, Cheng DT, Ladanyi M, Nafa K, and Hameed M
- Abstract
Melanotic Schwannomas (MS) are rare tumors that share histological features with melanocytic tumors and schwannomas. However, their genetics are poorly understood. To elucidate the genetic characteristics of MS, we performed genome-wide studies in a series of cases. Twelve MS cases were available for the study. Genomic DNAs extracted from formalin-fixed paraffin embedded tumor tissues were subjected to copy number (CN) and allelic imbalance (AI) analysis by Single Nucleotide Polymorphism (SNP)-array and screened for mutations in coding exons of 341 key cancer-associated genes using a hybrid capture-based next-generation sequencing (NGS) assay. Sanger sequencing was used to further verify recurrent mutations detected by NGS study. SNP-array analysis revealed remarkably stereotypic chromosomal abnormalities in MS. Hypodiploidy was common, typically involving monosomies of chromosomes 1, 2, and 17. All 12 samples showed mutations in PRKAR1A gene, including 2 cases with 2 mutations each. The 14 mutations were scattered across PRKAR1A, and most were inactivating mutations. AI on 17q, presenting as loss of heterozygosity with or without CN losses, combined with a PRKAR1A mutation was observed in 9/12 MS cases. The remaining 3 cases included the two samples harboring two mutations in PRKAR1A. MS exhibits a stereotypic pattern of chromosomal losses. In contrast, melanomas are typically characterized by the presence of multiple CN aberrations, without demonstrable differences in the frequency of losses and gains. Inactivation of both alleles of PRKAR1A by "two hits" observed in almost all cases underscores the central role of PRKAR1A in the pathogenesis of this neoplasm. © 2015 Wiley Periodicals, Inc., (© 2015 Wiley Periodicals, Inc.)
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- 2015
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19. Vascular endothelial growth factor, a novel and highly accurate pancreatic fluid biomarker for serous pancreatic cysts.
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Yip-Schneider MT, Wu H, Dumas RP, Hancock BA, Agaram N, Radovich M, and Schmidt CM
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- Adult, Aged, Aged, 80 and over, Biomarkers metabolism, Blotting, Western, Carcinoma, Pancreatic Ductal metabolism, Carcinoma, Pancreatic Ductal surgery, Diagnosis, Differential, Enzyme-Linked Immunosorbent Assay, Female, Humans, Immunohistochemistry, Male, Middle Aged, Pancreas metabolism, Pancreas surgery, Pancreatectomy, Pancreatic Cyst metabolism, Pancreatic Cyst surgery, Pancreatic Neoplasms metabolism, Pancreatic Neoplasms surgery, Pancreatic Pseudocyst diagnosis, Pancreatic Pseudocyst metabolism, Pancreatic Pseudocyst surgery, Precancerous Conditions metabolism, Precancerous Conditions surgery, Prospective Studies, Sensitivity and Specificity, Vascular Endothelial Growth Factor Receptor-2 metabolism, Carcinoma, Pancreatic Ductal diagnosis, Pancreatic Cyst diagnosis, Pancreatic Neoplasms diagnosis, Precancerous Conditions diagnosis, Vascular Endothelial Growth Factor A metabolism
- Abstract
Background: Mucinous pancreatic cysts (intraductal papillary mucinous neoplasm and mucinous cystic neoplasm) have the potential to progress to invasive pancreatic adenocarcinoma, presenting an opportunity for early detection, prevention, and cure. Serous cystic neoplasms (SCN) have no malignant potential, but can mimic mucinous pancreatic cysts on imaging. Therefore, identification of biomarkers that can distinguish between cystic lesions is critically important. We hypothesize that vascular endothelial growth factor (VEGF)-A levels in pancreatic fluid correlate with pathologic diagnosis., Study Design: Pancreatic cyst/duct fluid samples were prospectively collected from patients undergoing pancreatic resection and correlated with surgical pathology. VEGF levels were detected by ELISA. VEGF-A and VEGF receptor 2 expression in pancreatic tissue was localized by immunohistochemistry. Genetic alterations of the von Hippel-Lindau gene were determined by targeted next-generation sequencing., Results: Eighty-seven patients met inclusion criteria for enrollment. Final pathologic diagnoses included pseudocyst (n = 9), SCN (n = 17), mucinous cystic neoplasm (n = 24), low/moderate grade intraductal papillary mucinous neoplasm (n = 16), high-grade/invasive intraductal papillary mucinous neoplasm (n = 10), and pancreatic ductal adenocarcinoma (n = 11). VEGF-A was significantly upregulated in SCN cyst fluid compared with all other diagnoses (p < 0.0001). With a cut-off of 8,500 pg/mL, VEGF-A has 100% sensitivity and 97% specificity as an SCN biomarker. VEGF-A and VEGF receptor 2 are overexpressed in SCN cyst tissue. VEGF-C was also significantly elevated in SCN cyst fluid (p < 0.0001). With a cut-off set at 200 pg/mL, VEGF-C identifies SCN with 100% sensitivity and 90% specificity. The presence of a von Hippel-Lindau mutation in SCN cyst tissue correlates with elevated cyst fluid VEGF levels., Conclusions: This is the first report of a cyst fluid protein biomarker that can positively identify SCN. The ability to distinguish SCN from premalignant/malignant pancreatic cysts can spare the cost and risk of surveillance and surgical intervention in select patients., (Copyright © 2014 American College of Surgeons. Published by Elsevier Inc. All rights reserved.)
- Published
- 2014
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20. Dimethylaminoparthenolide and gemcitabine: a survival study using a genetically engineered mouse model of pancreatic cancer.
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Yip-Schneider MT, Wu H, Stantz K, Agaram N, Crooks PA, and Schmidt CM
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- Adenocarcinoma metabolism, Adenocarcinoma pathology, Animals, Cytokines blood, Deoxycytidine administration & dosage, Deoxycytidine analogs & derivatives, Disease Models, Animal, Immunohistochemistry, Mice, Mice, Mutant Strains, NF-kappa B antagonists & inhibitors, Pancreatic Neoplasms metabolism, Sesquiterpenes administration & dosage, Gemcitabine, Adenocarcinoma drug therapy, Antineoplastic Combined Chemotherapy Protocols therapeutic use, Pancreatic Neoplasms drug therapy, Pancreatic Neoplasms pathology
- Abstract
Background: Pancreatic cancer remains one of the deadliest cancers due to lack of early detection and absence of effective treatments. Gemcitabine, the current standard-of-care chemotherapy for pancreatic cancer, has limited clinical benefit. Treatment of pancreatic cancer cells with gemcitabine has been shown to induce the activity of the transcription factor nuclear factor-kappaB (NF-κB) which regulates the expression of genes involved in the inflammatory response and tumorigenesis. It has therefore been proposed that gemcitabine-induced NF-κB activation may result in chemoresistance. We hypothesize that NF-κB suppression by the novel inhibitor dimethylaminoparthenolide (DMAPT) may enhance the effect of gemcitabine in pancreatic cancer., Methods: The efficacy of DMAPT and gemcitabine was evaluated in a chemoprevention trial using the mutant Kras and p53-expressing LSL-KrasG12D/+; LSL-Trp53R172H; Pdx-1-Cre mouse model of pancreatic cancer. Mice were randomized to treatment groups (placebo, DMAPT [40 mg/kg/day], gemcitabine [50 mg/kg twice weekly], and the combination DMAPT/gemcitabine). Treatment was continued until mice showed signs of ill health at which time they were sacrificed. Plasma cytokine levels were determined using a Bio-Plex immunoassay. Statistical tests used included log-rank test, ANOVA with Dunnett's post-test, Student's t-test, and Fisher exact test., Results: Gemcitabine or the combination DMAPT/gemcitabine significantly increased median survival and decreased the incidence and multiplicity of pancreatic adenocarcinomas. The DMAPT/gemcitabine combination also significantly decreased tumor size and the incidence of metastasis to the liver. No significant differences in the percentages of normal pancreatic ducts or premalignant pancreatic lesions were observed between the treatment groups. Pancreata in which no tumors formed were analyzed to determine the extent of pre-neoplasia; mostly normal ducts or low grade pancreatic lesions were observed, suggesting prevention of higher grade lesions in these animals. While gemcitabine treatment increased the levels of the inflammatory cytokines interleukin 1α (IL-1α), IL-1β, and IL-17 in mouse plasma, DMAPT and DMAPT/gemcitabine reduced the levels of the inflammatory cytokines IL-12p40, monocyte chemotactic protein-1 (MCP-1), macrophage inflammatory protein-1 beta (MIP-1β), eotaxin, and tumor necrosis factor-alpha (TNF-α), all of which are NF-κB target genes., Conclusion: In summary, these findings provide preclinical evidence supporting further evaluation of agents such as DMAPT and gemcitabine for the prevention and treatment of pancreatic cancer.
- Published
- 2013
- Full Text
- View/download PDF
21. Diffusion-weighted imaging in characterization of cystic pancreatic lesions.
- Author
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Sandrasegaran K, Akisik FM, Patel AA, Rydberg M, Cramer HM, Agaram NP, and Schmidt CM
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Observer Variation, Pancreatic Cyst pathology, Precancerous Conditions pathology, Reference Standards, Reproducibility of Results, Retrospective Studies, Sensitivity and Specificity, Diffusion Magnetic Resonance Imaging methods, Pancreatic Cyst diagnosis, Precancerous Conditions diagnosis
- Abstract
Aim: To evaluate whether apparent diffusion coefficient (ADC) measurements from diffusion-weighted imaging (DWI) can characterize or predict the malignant potential of cystic pancreatic lesions., Materials and Methods: Retrospective review of the magnetic resonance imaging (MRI) database over a 2-year period revealed 136 patients with cystic pancreatic lesions. Patients with DWI studies and histological confirmation of cystic mass were included. In patients with known pancreatitis, lesions with amylase content of >1000 IU/l that resolved on subsequent scans were included as pseudocysts. ADC of cystic lesions was measured by two independent reviewers. These values were then compared to categorize these lesions as benign or malignant using conventional MRI sequences., Results: Seventy lesions were analysed: adenocarcinoma (n=4), intraductal papillary mucinous neoplasm (IPMN; n=28), mucinous cystic neoplasm (MCN; n=9), serous cystadenoma (n=16), and pseudocysts (n=13). There was no difference between ADC values of malignant and non-malignant lesions (p=0.06), between mucinous and serous tumours (p=0.12), or between IPMN and MCN (p=0.42). ADC values for low-grade IPMN were significantly higher than those for high-grade or invasive IPMN (p=0.03)., Conclusion: ADC values may be helpful in deciding the malignant potential of IPMN. However, they are not useful in differentiating malignant from benign lesions or for characterizing cystic pancreatic lesions., (Copyright © 2011 The Royal College of Radiologists. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2011
- Full Text
- View/download PDF
22. Atypical ductal hyperplasia: interobserver and intraobserver variability.
- Author
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Jain RK, Mehta R, Dimitrov R, Larsson LG, Musto PM, Hodges KB, Ulbright TM, Hattab EM, Agaram N, Idrees MT, and Badve S
- Subjects
- Biomarkers, Tumor analysis, Breast Neoplasms epidemiology, Breast Neoplasms metabolism, Carcinoma in Situ diagnosis, Carcinoma in Situ metabolism, Carcinoma, Ductal, Breast diagnosis, Carcinoma, Ductal, Breast metabolism, Female, Humans, Hyperplasia epidemiology, Hyperplasia metabolism, Hyperplasia pathology, Immunohistochemistry, Keratins analysis, Keratins biosynthesis, Observer Variation, Precancerous Conditions diagnosis, Precancerous Conditions metabolism, Reproducibility of Results, Breast Neoplasms diagnosis, Carcinoma in Situ epidemiology, Carcinoma, Ductal, Breast epidemiology, Precancerous Conditions epidemiology
- Abstract
Interobserver reproducibility in the diagnosis of benign intraductal proliferative lesions has been poor. The aims of the study were to investigate the inter- and intraobserver variability and the impact of the addition of an immunostain for high- and low-molecular weight keratins on the variability. Nine pathologists reviewed 81 cases of breast proliferative lesions in three stages and assigned each of the lesions to one of the following three diagnoses: usual ductal hyperplasia, atypical ductal hyperplasia and ductal carcinoma in situ. Hematoxylin and eosin slides and corresponding slides stained with ADH-5 cocktail (cytokeratins (CK) 5, 14. 7, 18 and p63) by immunohistochemistry were evaluated. Concordance was evaluated at each stage of the study. The interobserver agreement among the nine pathologists for diagnosing the 81 proliferative breast lesions was fair (κ-value=0.34). The intraobserver κ-value ranged from 0.56 to 0.88 (moderate to strong). Complete agreement among nine pathologists was achieved in only nine (11%) cases, at least eight agreed in 20 (25%) cases and seven or more agreed in 38 (47%) cases. Following immunohistochemical stain, a significant improvement in the interobserver concordance (overall κ-value=0.50) was observed (P=0.015). There was a significant reduction in the total number of atypical ductal hyperplasia diagnosis made by nine pathologists after the use of ADH-5 immunostain. Atypical ductal hyperplasia still remains a diagnostic dilemma with wide variation in both inter- and intraobserver reproducibility among pathologists. The addition of an immunohistochemical stain led to a significant improvement in the concordance rate. More importantly, there was an 8% decrease in the number of lesions classified as atypical ductal hyperplasia in favor of usual hyperplasia; in clinical practice, this could lead to a decrease in the number of surgeries carried out for intraductal proliferative lesions.
- Published
- 2011
- Full Text
- View/download PDF
23. Clonal evidence for the progression of a testicular germ cell tumor to angiosarcoma.
- Author
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Idrees MT, Kuhar M, Ulbright TM, Zhang S, Agaram N, Wang M, Grignon DJ, Eble JN, and Cheng L
- Subjects
- Clone Cells, DNA, Neoplasm analysis, Disease Progression, Disease-Free Survival, Hemangiosarcoma genetics, Humans, In Situ Hybridization, Fluorescence, Loss of Heterozygosity, Male, Mediastinal Neoplasms genetics, Microdissection, Microsatellite Repeats genetics, Teratoma drug therapy, Teratoma genetics, Testicular Neoplasms drug therapy, Testicular Neoplasms genetics, Hemangiosarcoma pathology, Mediastinal Neoplasms pathology, Neoplasms, Second Primary pathology, Teratoma secondary, Testicular Neoplasms pathology
- Abstract
Testicular germ cell tumors may have multiple histologic subtypes. Teratoma components are capable of transformation into somatic malignancies. An alternative hypothesis for the development of angiosarcoma in a patient with germ cell tumors is secondary to radiation or chemotherapy. We report a patient with a mixed testicular germ cell tumor who presented with retroperitoneal, mediastinal, and pulmonary metastases after chemotherapy. Forty months after his original diagnosis, a mediastinal angiosarcoma was diagnosed. Using tissue microdissection-loss of heterozygosity analysis and fluorescence in situ hybridization, we analyzed the clonality of the primary germ cell tumor, angiosarcoma, and metastatic teratoma. Six microsatellite polymorphic markers from 3 different chromosomes were used to examine the pattern of allelic loss; chromosome 12p alterations, including isochromosome 12p and 12p overrepresentation, were investigated. Loss of heterozygosity was demonstrated for microsatellite loci of all 3 chromosomes, and completely concordant loss of heterozygosity patterns were observed among primary germ cell tumor components, metastatic teratoma, and angiosarcoma. Isochromosome 12p and 12p overrepresentations were consistently found in the primary germ cell tumor components, metastatic teratoma, and angiosarcoma. The results indicated a clonal origin of the tumors, which supports that angiosarcoma, as well as the teratomas, arose from the testicular germ cell tumors.
- Published
- 2010
- Full Text
- View/download PDF
24. Globular hepatic amyloid: a diagnostic peculiarity that bears clinical significance.
- Author
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Agaram N, Shia J, Klimstra DS, Lau N, Lin O, Erlandson RA, Filippa DA, and Godwin TA
- Subjects
- Amyloidosis etiology, Hepatitis C, Chronic complications, Hepatitis C, Chronic pathology, Humans, Immunoglobulin lambda-Chains blood, Inclusion Bodies metabolism, Liver metabolism, Liver Diseases etiology, Liver Diseases metabolism, Lymphoma, B-Cell complications, Lymphoma, B-Cell pathology, Male, Middle Aged, Amyloid metabolism, Amyloidosis pathology, Inclusion Bodies pathology, Liver pathology, Liver Diseases pathology
- Abstract
Hepatic amyloid deposition in the form of globular inclusions is a rare occurrence. Only 24 such cases have been reported to date. Its clinical and pathological significance are undefined. Unawareness of such a pattern can cause diagnostic confusion. We herein describe a case of globular hepatic amyloid in a patient with a B-cell lymphoma and chronic hepatitis C. The findings in our case support the literature data in that (1) it is often an incidental finding during workup for other coexisting conditions and (2) its morphology is peculiar but can be recognized with ease if one is aware of its existence. Our case also provides new insights into this condition. First, it represents the first nonautopsy case to demonstrate that globular hepatic amyloid is an indication of systemic amyloidosis, thus emphasizing the clinical importance of the recognition of this condition. Second, in our case, there was a coexisting B-cell lymphoma, the constituent cells of which showed immunoglobulin lambda light chain restriction, and patient's serum lambda light chain was elevated. However, light chain restriction was not demonstrated in the globular inclusions, and there was no evidence of monoclonal gammopathy by serum electrophoresis. Whether immunoglobulin light-chain abnormality played a causal role in this condition is to be determined.
- Published
- 2005
- Full Text
- View/download PDF
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