Search

Predicting ATP-Protein Binding sites in genes is of great significance in the field of Biology and Medicine. The majority of research in this field has been conducted through time- and resource-intensive 'wet experiments' in laboratories. Over the years, researchers have been investigating computational methods computational methods to accomplish the same goals, utilising the strength of advanced Deep Learning and NLP algorithms. In this paper, we propose to develop methods to classify ATP-Protein binding sites. We conducted various experiments mainly using PSSMs and several word embeddings as features. We used 2D CNNs and LightGBM classifiers as our chief Deep Learning Algorithms. The MP3Vec and BERT models have also been subjected to testing in our study. The outcomes of our experiments demonstrated improvement over the state-of-the-art benchmarks., Comment: Published at 3rd Annual AAAI Workshop on AI to Accelerate Science and Engineering (AI2ASE)

Representational Similarity Analysis is a method from cognitive neuroscience, which helps in comparing representations from two different sources of data. In this paper, we propose using Representational Similarity Analysis to probe the semantic grounding in language models of code. We probe representations from the CodeBERT model for semantic grounding by using the data from the IBM CodeNet dataset. Through our experiments, we show that current pre-training methods do not induce semantic grounding in language models of code, and instead focus on optimizing form-based patterns. We also show that even a little amount of fine-tuning on semantically relevant tasks increases the semantic grounding in CodeBERT significantly. Our ablations with the input modality to the CodeBERT model show that using bimodal inputs (code and natural language) over unimodal inputs (only code) gives better semantic grounding and sample efficiency during semantic fine-tuning. Finally, our experiments with semantic perturbations in code reveal that CodeBERT is able to robustly distinguish between semantically correct and incorrect code., Comment: Under review at ADMA 2022

Propaganda spreads the ideology and beliefs of like-minded people, brainwashing their audiences, and sometimes leading to violence. SemEval 2020 Task-11 aims to design automated systems for news propaganda detection. Task-11 consists of two sub-tasks, namely, Span Identification - given any news article, the system tags those specific fragments which contain at least one propaganda technique; and Technique Classification - correctly classify a given propagandist statement amongst 14 propaganda techniques. For sub-task 1, we use contextual embeddings extracted from pre-trained transformer models to represent the text data at various granularities and propose a multi-granularity knowledge sharing approach. For sub-task 2, we use an ensemble of BERT and logistic regression classifiers with linguistic features. Our results reveal that the linguistic features are the strong indicators for covering minority classes in a highly imbalanced dataset., Comment: Accepted at SemEval-2020 workshop

Research shows that over the last decade, malware has been growing exponentially, causing substantial financial losses to various organizations. Different anti-malware companies have been proposing solutions to defend attacks from these malware. The velocity, volume, and the complexity of malware are posing new challenges to the anti-malware community. Current state-of-the-art research shows that recently, researchers and anti-virus organizations started applying machine learning and deep learning methods for malware analysis and detection. We have used opcode frequency as a feature vector and applied unsupervised learning in addition to supervised learning for malware classification. The focus of this tutorial is to present our work on detecting malware with 1) various machine learning algorithms and 2) deep learning models. Our results show that the Random Forest outperforms Deep Neural Network with opcode frequency as a feature. Also in feature reduction, Deep Auto-Encoders are overkill for the dataset, and elementary function like Variance Threshold perform better than others. In addition to the proposed methodologies, we will also discuss the additional issues and the unique challenges in the domain, open research problems, limitations, and future directions., Comment: 11 Pages and 3 Figures

Word obfuscation or substitution means replacing one word with another word in a sentence to conceal the textual content or communication. Word obfuscation is used in adversarial communication by terrorist or criminals for conveying their messages without getting red-flagged by security and intelligence agencies intercepting or scanning messages (such as emails and telephone conversations). ConceptNet is a freely available semantic network represented as a directed graph consisting of nodes as concepts and edges as assertions of common sense about these concepts. We present a solution approach exploiting vast amount of semantic knowledge in ConceptNet for addressing the technically challenging problem of word substitution in adversarial communication. We frame the given problem as a textual reasoning and context inference task and utilize ConceptNet's natural-language-processing tool-kit for determining word substitution. We use ConceptNet to compute the conceptual similarity between any two given terms and define a Mean Average Conceptual Similarity (MACS) metric to identify out-of-context terms. The test-bed to evaluate our proposed approach consists of Enron email dataset (having over 600000 emails generated by 158 employees of Enron Corporation) and Brown corpus (totaling about a million words drawn from a wide variety of sources). We implement word substitution techniques used by previous researches to generate a test dataset. We conduct a series of experiments consisting of word substitution methods used in the past to evaluate our approach. Experimental results reveal that the proposed approach is effective., Comment: This paper is an extended and detailed version of our (same authors) previous paper (regular paper) published at COMSNETS2015

Research shows that many like-minded people use popular microblogging websites for posting hateful speech against various religions and race. Automatic identification of racist and hate promoting posts is required for building social media intelligence and security informatics based solutions. However, just keyword spotting based techniques cannot be used to accurately identify the intent of a post. In this paper, we address the challenge of the presence of ambiguity in such posts by identifying the intent of author. We conduct our study on Tumblr microblogging website and develop a cascaded ensemble learning classifier for identifying the posts having racist or radicalized intent. We train our model by identifying various semantic, sentiment and linguistic features from free-form text. Our experimental results shows that the proposed approach is effective and the emotion tone, social tendencies, language cues and personality traits of a narrative are discriminatory features for identifying the racist intent behind a post., Comment: This paper is an extended and detailed version of our (same authors') short paper published in EISIC 2016

Tumblr is one of the largest and most popular microblogging website on the Internet. Studies shows that due to high reachability among viewers, low publication barriers and social networking connectivity, microblogging websites are being misused as a platform to post hateful speech and recruiting new members by existing extremist groups. Manual identification of such posts and communities is overwhelmingly impractical due to large amount of posts and blogs being published every day. We propose a topic based web crawler primarily consisting of multiple phases: training a text classifier model consisting examples of only hate promoting users, extracting posts of an unknown tumblr micro-blogger, classifying hate promoting bloggers based on their activity feeds, crawling through the external links to other bloggers and performing a social network analysis on connected extremist bloggers. To investigate the effectiveness of our approach, we conduct experiments on large real world dataset. Experimental results reveals that the proposed approach is an effective method and has an F-score of 0.80. We apply social network analysis based techniques and identify influential and core bloggers in a community., Comment: 8 Pages, 7 Figures including 9 images, 2 Tables, 3 Algorithms, Extended version of our work Agarwal et. al., Micropost 2015

Research shows that various social media platforms on Internet such as Twitter, Tumblr (micro-blogging websites), Facebook (a popular social networking website), YouTube (largest video sharing and hosting website), Blogs and discussion forums are being misused by extremist groups for spreading their beliefs and ideologies, promoting radicalization, recruiting members and creating online virtual communities sharing a common agenda. Popular microblogging websites such as Twitter are being used as a real-time platform for information sharing and communication during planning and mobilization if civil unrest related events. Applying social media intelligence for predicting and identifying online radicalization and civil unrest oriented threats is an area that has attracted several researchers' attention over past 10 years. There are several algorithms, techniques and tools that have been proposed in existing literature to counter and combat cyber-extremism and predicting protest related events in much advance. In this paper, we conduct a literature review of all these existing techniques and do a comprehensive analysis to understand state-of-the-art, trends and research gaps. We present a one class classification approach to collect scholarly articles targeting the topics and subtopics of our research scope. We perform characterization, classification and an in-depth meta analysis meta-anlaysis of about 100 conference and journal papers to gain a better understanding of existing literature., Comment: 18 pages, 16 figures, 4 tables. This paper is a comprehensive and detailed literature survey to understand current state-of-the-art of Online Social Media Intelligence to counter and combat ISI related threats