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Noroviruses have been reported as being a common cause of acute gastroenteritis both in children and adults worldwide. Genotyping and nomenclature of noroviruses was based on the partial capsid gene of the ORF2. Due to frequent reported recombination activities in the ORF1/ORF2 junction, a new dual nomenclature has been proposed based on genotyping of two genes – the capsid and polymerase genes. This study identified recombinant noroviruses circulating in Cameroon between 2010 and 2013. RT-PCR –based methods, next generation sequencing and phylogenetic analysis were used to genotype samples from hospitalized children. The combined RdRp/capsid dual genotype was determined for 19 GII strains including 5 RdRp genotypes (GII.P4, GII.P7, GII.P17, GII.P21, and GII.P31) and 5 capsid genotypes (GII.2, GII.3, GII.4, GII.6, GII.17). They had 17(89.5%) recombinants and 2 (112.5%) non recombinants. 17 were recombinants. The most prevalent noroviruses were GII.4 (76.5%) consisting of GII.4 Sydney [P31] (41.2%) and GII.4 Sydney [P4 New Orleans] (35.3%), followed by GII.6 [P7] (11.8%), GII.2 [P21] (5.9%) and GII.3 [P21] (5.9%). This is the first study of norovirus dual genotyping and recombinants in Cameroon. Recombination activity is high and contributes to ongoing evolution of circulating noroviruses in Cameroon.

Norovirus is a common cause of acute gastroenteritis (AGE) among children in developing countries. Limited data on the prevalence and genetic variability of norovirus are available in Cameroon, where early childhood mortality due to AGE is common. We tested 902 fecal specimens from children younger than 5 years of age hospitalized with AGE between January 2010 and December 2013. Overall, 76 (8.4%) samples tested positive for norovirus, of which 83% (63/76) were among children below 12 months old. Most of the noroviruses detected were in children infected between July and December of each year. All norovirus-positive specimens were genotyped, with 80% (61/76) being GII.4 (three variants detected). Genotypes GI.2, GI.6, GII.1, GII.2, GII.3, GII.6, GII.16, GII.17, and GII.21 were also detected. Interestingly, GII.4 Sydney and GII.17 Kawasaki viruses were found as early as 2010, years before their emergence globally. This study suggests norovirus is a significant cause of moderate to severe gastroenteritis among young children in Cameroon. The results are important to highlight appropriate prevention and control strategies for reducing the burden of norovirus disease.

Background Despite the global roll-out of rotavirus vaccines (RotaTeq/Rotarix / ROTAVAC/Rotasiil), mortality and morbidity due to group A rotavirus (RVA) remains high in sub-Saharan Africa, causing 104,000 deaths and 600,000 hospitalizations yearly. In Cameroon, Rotarix™ was introduced in March 2014, but, routine laboratory diagnosis of rotavirus infection is not yet a common practice, and vaccine effectiveness studies to determine the impact of vaccine introduction have not been done. Thus, studies examining RVA prevalence post vaccine introduction are needed. The study aim was to determine RVA prevalence in severe diarrhoea cases in Littoral region, Cameroon and investigate the role of other diarrheagenic pathogens in RVA-positive cases. Methods We carried out a study among hospitalized children Results The ELISA assay detected RVA antigen in 54.6% (71/130) of specimens, with 45, positive by VP6 RT-PCR and 54, positive using Luminex xTAG GPP. Luminex GPP was able to detect all 45 VP6 RT-PCR positive samples. Co-infections were found in 63.0% (34/54) of Luminex positive RVA infections, with Shigella (35.3%; 12/34) and ETEC (29.4%; 10/34) detected frequently. Of the 71 ELISA positive RVA cases, 57.8% (41/71) were fully vaccinated, receiving two doses of Rotarix. Conclusion This study provides insight on RVA prevalence in Cameroon, which could be useful for post-vaccine epidemiological studies, highlights higher than expected RVA prevalence in vaccinated children hospitalized for diarrhoea and provides the trend of RVA co-infection with other enteric pathogens. RVA genotyping is needed to determine circulating rotavirus genotypes in Cameroon, including those causing disease in vaccinated children.