14 results on '"Alan R. Mardinly"'
Search Results
2. A thin-film optogenetic visual prosthesis
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Eric B Knudsen, Kara Zappitelli, Jennifer Brown, Jonathan Reeder, Kevin Sean Smith, Marat Rostov, Jaebin Choi, Amy Rochford, Nate Slager, Satoru K Miura, Kyle Rodgers, Ansel Reed, Yonatan R Lewis Israeli, Seton Shiraga, Kyung Jin Seo, Corey Wolin, Paul Dawson, Mohamed Eltaeb, Arvind Dasgupta, Max Rothman, Eugene Yoon, Paul Chong, Seleipiri Charles, Jay M. Stewart, Ruwan A Silva, Tyson Kim, Yifan Kong, Alan R Mardinly, and Max Hodak
- Abstract
Retinitis pigmentosa and macular degeneration lead to photoreceptor death and loss of visual perception. Despite recent progress, restorative technologies for photoreceptor degeneration remain largely unavailable. Here, we describe a novel optogenetic visual prosthesis (FlexLED) based on a combination of a thin-film retinal display and optogenetic activation of retinal ganglion cells (RGCs). The FlexLED implant is a 30 µm thin, flexible, wireless µLED display with 8,192 pixels, each with an emission area of 66 µm2. The display is affixed to the retinal surface, and the electronics package is mounted under the conjunctiva in the form factor of a conventional glaucoma drainage implant. In a rabbit model of photoreceptor degeneration, optical stimulation of the retina using the FlexLED elicits activity in visual cortex. This technology is readily scalable to hundreds of thousands of pixels, providing a route towards an implantable optogenetic visual prosthesis capable of generating vision by stimulating RGCs at near-cellular resolution.
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- 2023
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3. Partially Coherent Holographic Temporal Focusing for 3D Light Sculpting with Single Neuron Resolution
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Laura Waller, Hillel Adesnik, Ian A. Oldenburg, Nicolas C. Pégard, and Alan R. Mardinly
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0301 basic medicine ,Physics ,business.industry ,Resolution (electron density) ,Holography ,Speckle noise ,Optogenetics ,law.invention ,Photostimulation ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Optics ,medicine.anatomical_structure ,law ,High spatial resolution ,medicine ,Neuron ,business ,Image resolution ,030217 neurology & neurosurgery - Abstract
We propose a two-photon optogenetic photostimulation method that combines partially coherent 3D holography and temporal focusing for precise targeting of individual neurons. Experimental results demonstrate simultaneous illumination of 200 targets with high spatial resolution.
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- 2018
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4. Precise multimodal optical control of neural ensemble activity
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Alan R. Mardinly, Stephen G. Brohawn, Kirill Chesnov, Hillel Adesnik, Evan H Lyall, Savitha Sridharan, Laura Waller, Ian A. Oldenburg, and Nicolas C. Pégard
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0301 basic medicine ,Patch-Clamp Techniques ,Computer science ,Cell Survival ,Interface (computing) ,Holography ,Mice, Transgenic ,Optogenetics ,03 medical and health sciences ,Neural activity ,Mice ,0302 clinical medicine ,High fidelity ,Neural ensemble ,Pregnancy ,Animals ,Brain function ,Cerebral Cortex ,Neurons ,Mice, Inbred ICR ,Opsins ,General Neuroscience ,Brain ,Cortical neurons ,Electrophysiological Phenomena ,030104 developmental biology ,Optical control ,Female ,Nerve Net ,Neuroscience ,030217 neurology & neurosurgery ,Photic Stimulation - Abstract
Understanding brain function requires technologies that can control the activity of large populations of neurons with high fidelity in space and time. We developed a multiphoton holographic approach to activate or suppress the activity of ensembles of cortical neurons with cellular resolution and sub-millisecond precision. Since existing opsins were inadequate, we engineered new soma-targeted (ST) optogenetic tools, ST-ChroME and IRES-ST-eGtACR1, optimized for multiphoton activation and suppression. Employing a three-dimensional all-optical read-write interface, we demonstrate the ability to simultaneously photostimulate up to 50 neurons distributed in three dimensions in a 550 × 550 × 100-µm3 volume of brain tissue. This approach allows the synthesis and editing of complex neural activity patterns needed to gain insight into the principles of neural codes.
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- 2017
5. Holographic Temporal Focusing for 3D Photo-activation With Single Neuron Resolution
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Hillel Adesnik, Jingzhao Zhang, Laura Waller, Savitha Sridharan, Alan R. Mardinly, and Nicolas C. Pégard
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0301 basic medicine ,Physics ,business.industry ,Resolution (electron density) ,Holography ,Optogenetics ,law.invention ,Photostimulation ,03 medical and health sciences ,030104 developmental biology ,Optics ,medicine.anatomical_structure ,law ,Temporal resolution ,medicine ,Neuron ,business ,Image resolution ,Diffraction grating - Abstract
We propose a new technique for two-photon optogenetic photostimulation that combines 3D holography and temporal focusing to enable single neuron spatial resolution throughout a large volume. Experiments are done in mouse brain tissue.
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- 2017
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6. The Nogo Receptor Family Restricts Synapse Number in the Developing Hippocampus
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Alan R. Mardinly, Michael E. Greenberg, Roman J. Giger, Caleigh Mandel-Brehm, Zachary P. Wills, and Alejandra E. McCord
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RHOA ,Neuroscience(all) ,Green Fluorescent Proteins ,Synaptogenesis ,Mice, Transgenic ,Receptors, Cell Surface ,Dendrite ,GPI-Linked Proteins ,Transfection ,Hippocampus ,Receptors, Tumor Necrosis Factor ,Article ,Synapse ,Mice ,Organ Culture Techniques ,Excitatory synapse ,Microscopy, Electron, Transmission ,Postsynaptic potential ,Nogo Receptor 1 ,medicine ,Animals ,RNA, Small Interfering ,Cells, Cultured ,Neurons ,Microscopy, Confocal ,biology ,Glutamate Decarboxylase ,General Neuroscience ,Age Factors ,Gene Expression Regulation, Developmental ,Membrane Proteins ,Dendrites ,Cell biology ,medicine.anatomical_structure ,Animals, Newborn ,Synapses ,Silent synapse ,biology.protein ,Signal transduction ,rhoA GTP-Binding Protein ,Disks Large Homolog 4 Protein ,Guanylate Kinases ,Neuroscience ,Myelin Proteins ,Signal Transduction - Abstract
SummaryNeuronal development is characterized by a period of exuberant synaptic growth that is well studied. However, the mechanisms that restrict this process are less clear. Here we demonstrate that glycosylphosphatidylinositol-anchored cell-surface receptors of the Nogo Receptor family (NgR1, NgR2, and NgR3) restrict excitatory synapse formation. Loss of any one of the NgRs results in an increase in synapse number in vitro, whereas loss of all three is necessary for abnormally elevated synaptogenesis in vivo. We show that NgR1 inhibits the formation of new synapses in the postsynaptic neuron by signaling through the coreceptor TROY and RhoA. The NgR family is downregulated by neuronal activity, a response that may limit NgR function and facilitate activity-dependent synapse development. These findings suggest that NgR1, a receptor previously shown to restrict axon growth in the adult, also functions in the dendrite as a barrier that limits excitatory synapse number during brain development.
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- 2012
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7. High-speed 3D brain activity quantification with Compressive Light-Field Microscopy
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Evan H Lyall, Laura Waller, Hillel Adesnik, Nicolas C. Pégard, Alan R. Mardinly, and Nick Antipa
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Fluorescence-lifetime imaging microscopy ,Materials science ,Optics ,business.industry ,Scattering ,Microscopy ,Fluorescence microscope ,Time domain ,Iterative reconstruction ,Deconvolution ,business ,Light scattering ,Biomedical engineering - Abstract
We present a non-imaging light-field microscopy method for volume quantification of neural activity in scattering brain tissue. Individual neuron fluorescence is computed directly by independent component identification in the phase-space time domain, without deconvolution.
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- 2015
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8. Sensory experience regulates cortical inhibition by inducing IGF1 in VIP neurons
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Alan R. Mardinly, Michela Fagiolini, Jeremy E. Bazinet, Annarita Patrizi, David A. Harmin, Ivo Spiegel, Caleigh Mandel-Brehm, Hillel Adesnik, Eleonora Centofante, Christopher P. Tzeng, and Michael E. Greenberg
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0301 basic medicine ,Male ,medicine.medical_specialty ,Vasoactive intestinal peptide ,Neural Inhibition ,Biology ,Inhibitory postsynaptic potential ,Article ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Cellular neuroscience ,Neurotrophic factors ,Internal medicine ,Neural Pathways ,medicine ,Biological neural network ,Animals ,Insulin-Like Growth Factor I ,Vision, Ocular ,Visual Cortex ,Neurons ,Multidisciplinary ,Neuronal Plasticity ,Pyramidal Cells ,Mice, Inbred C57BL ,030104 developmental biology ,Endocrinology ,nervous system ,Synaptic plasticity ,Synapses ,Female ,Neuroscience ,Non-spiking neuron ,hormones, hormone substitutes, and hormone antagonists ,030217 neurology & neurosurgery ,Vasoactive Intestinal Peptide - Abstract
Inhibitory neurons regulate the adaptation of neural circuits to sensory experience, but the molecular mechanisms by which experience controls the connectivity between different types of inhibitory neuron to regulate cortical plasticity are largely unknown. Here we show that exposure of dark-housed mice to light induces a gene program in cortical vasoactive intestinal peptide (VIP)-expressing neurons that is markedly distinct from that induced in excitatory neurons and other subtypes of inhibitory neuron. We identify Igf1 as one of several activity-regulated genes that are specific to VIP neurons, and demonstrate that IGF1 functions cell-autonomously in VIP neurons to increase inhibitory synaptic input onto these neurons. Our findings further suggest that in cortical VIP neurons, experience-dependent gene transcription regulates visual acuity by activating the expression of IGF1, thus promoting the inhibition of disinhibitory neurons and affecting inhibition onto cortical pyramidal neurons.
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- 2014
9. Npas4 regulates excitatory-inhibitory balance within neural circuits through cell-type-specific gene programs
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Jeremy E. Bazinet, Alan R. Mardinly, Christopher P. Tzeng, Cameron H. Couch, Harrison W. Gabel, Ivo Spiegel, David A. Harmin, and Michael E. Greenberg
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Nervous system ,Transcription, Genetic ,Cell Culture Techniques ,Biology ,Inhibitory postsynaptic potential ,Bioinformatics ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Cellular neuroscience ,medicine ,Biological neural network ,Basic Helix-Loop-Helix Transcription Factors ,Premovement neuronal activity ,Animals ,030304 developmental biology ,Mice, Knockout ,Neurons ,0303 health sciences ,Biochemistry, Genetics and Molecular Biology(all) ,Embryo, Mammalian ,medicine.anatomical_structure ,nervous system ,Gene Expression Regulation ,Synaptic plasticity ,Synapses ,Excitatory postsynaptic potential ,Neuroscience ,Non-spiking neuron ,030217 neurology & neurosurgery - Abstract
SummaryThe nervous system adapts to experience by inducing a transcriptional program that controls important aspects of synaptic plasticity. Although the molecular mechanisms of experience-dependent plasticity are well characterized in excitatory neurons, the mechanisms that regulate this process in inhibitory neurons are only poorly understood. Here, we describe a transcriptional program that is induced by neuronal activity in inhibitory neurons. We find that, while neuronal activity induces expression of early-response transcription factors such as Npas4 in both excitatory and inhibitory neurons, Npas4 activates distinct programs of late-response genes in inhibitory and excitatory neurons. These late-response genes differentially regulate synaptic input to these two types of neurons, promoting inhibition onto excitatory neurons while inducing excitation onto inhibitory neurons. These findings suggest that the functional outcomes of activity-induced transcriptional responses are adapted in a cell-type-specific manner to achieve a circuit-wide homeostatic response.
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- 2013
10. Loss of Inhibitory Interneurons in the Dorsal Spinal Cord and Elevated Itch in Bhlhb5 Mutant Mice
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Erin M. Savner, Roman Corfas, Roderick R. McInnes, Linda Hu, Alan R. Mardinly, Frank L. Rice, Gabriel Corfas, Stephanie I. Mok, Cynthia C. Jung, Clifford J. Woolf, Sonia Cohen, Anar Shah, Perrine Inquimbert, Jonathan Zurawski, Michael E. Greenberg, Christos S. Tolias, Alejandra E. McCord, Qiufu Ma, Sarah E. Ross, Suzhen Chen, Yi Xu, Institut des Neurosciences Cellulaires et Intégratives (INCI), and Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)
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Cell Survival ,Neuroscience(all) ,DEVBIO ,Biology ,Inhibitory postsynaptic potential ,MOLNEURO ,Article ,03 medical and health sciences ,Mice ,Mice, Neurologic Mutants ,0302 clinical medicine ,Interneurons ,Sensation ,medicine ,Biological neural network ,Basic Helix-Loop-Helix Transcription Factors ,Animals ,Gene Knock-In Techniques ,skin and connective tissue diseases ,Posterior Horn Cell ,Transcription factor ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Mice, Knockout ,0303 health sciences ,General Neuroscience ,Pruritus ,Neural Inhibition ,Scratching ,Spinal cord ,Posterior Horn Cells ,medicine.anatomical_structure ,Spinal Cord ,GDF7 ,Neuroscience ,030217 neurology & neurosurgery ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
SummaryItch is the least well understood of all the somatic senses, and the neural circuits that underlie this sensation are poorly defined. Here we show that the atonal-related transcription factor Bhlhb5 is transiently expressed in the dorsal horn of the developing spinal cord and appears to play a role in the formation and regulation of pruritic (itch) circuits. Mice lacking Bhlhb5 develop self-inflicted skin lesions and show significantly enhanced scratching responses to pruritic agents. Through genetic fate-mapping and conditional ablation, we provide evidence that the pruritic phenotype in Bhlhb5 mutants is due to selective loss of a subset of inhibitory interneurons in the dorsal horn. Our findings suggest that Bhlhb5 is required for the survival of a specific population of inhibitory interneurons that regulate pruritis, and provide evidence that the loss of inhibitory synaptic input results in abnormal itch.
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- 2010
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11. The Angelman Syndrome protein Ube3A regulates synapse development by ubiquitinating arc
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David M. Lipton, Alan R. Mardinly, Brenda L. Bloodgood, Steven W. Flavell, Eric C. Griffith, René Maehr, Judith A. Steen, Hidde L. Ploegh, Paul L. Greer, Paul F. Worley, Rikinari Hanayama, Tae Kyung Kim, Shoaib Chowdhury, Zachary Waldon, Michael E. Greenberg, Massachusetts Institute of Technology. Department of Biology, Whitehead Institute for Biomedical Research, Ploegh, Hidde, and Maehr, Rene
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congenital, hereditary, and neonatal diseases and abnormalities ,Ubiquitin-Protein Ligases ,HUMDISEASE ,Nerve Tissue Proteins ,AMPA receptor ,MOLNEURO ,General Biochemistry, Genetics and Molecular Biology ,Synapse ,Mice ,Cognition ,Excitatory synapse ,Angelman syndrome ,UBE3A ,medicine ,Animals ,Humans ,Receptors, AMPA ,Cells, Cultured ,Mice, Knockout ,Genetics ,biology ,Biochemistry, Genetics and Molecular Biology(all) ,Ubiquitination ,Glutamate receptor ,medicine.disease ,Ubiquitin ligase ,Cytoskeletal Proteins ,Synapses ,Silent synapse ,biology.protein ,Angelman Syndrome ,Neuroscience - Abstract
SummaryAngelman Syndrome is a debilitating neurological disorder caused by mutation of the E3 ubiquitin ligase Ube3A, a gene whose mutation has also recently been associated with autism spectrum disorders (ASDs). The function of Ube3A during nervous system development and how Ube3A mutations give rise to cognitive impairment in individuals with Angleman Syndrome and ASDs are not clear. We report here that experience-driven neuronal activity induces Ube3A transcription and that Ube3A then regulates excitatory synapse development by controlling the degradation of Arc, a synaptic protein that promotes the internalization of the AMPA subtype of glutamate receptors. We find that disruption of Ube3A function in neurons leads to an increase in Arc expression and a concomitant decrease in the number of AMPA receptors at excitatory synapses. We propose that this deregulation of AMPA receptor expression at synapses may contribute to the cognitive dysfunction that occurs in Angelman Syndrome and possibly other ASDs.
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- 2009
12. MICROGLIA AND THE COMPLEMENT CASCADE: SHAPING NEURAL CIRCUITS IN THE DEVELOPING BRAIN
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Emily K. Lehrman, Alan R. Mardinly, Ryuta Koyama, Dorothy P. Schafer, Ben A. Barres, Michael E. Greenberg, Amanda G. Kautzman, and Beth Stevens
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Psychiatry and Mental health ,medicine.anatomical_structure ,Microglia ,Computer science ,medicine ,Biological neural network ,Neuroscience ,Biological Psychiatry ,Complement system - Published
- 2012
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13. Microglia Sculpt Postnatal Neural Circuits in an Activity and Complement-Dependent Manner
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Ben A. Barres, Beth Stevens, Emily K. Lehrman, Dorothy P. Schafer, Ryuta Koyama, Michael E. Greenberg, Ryo Yamasaki, Richard M. Ransohoff, Amanda G. Kautzman, and Alan R. Mardinly
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Dependent manner ,Microglia ,General Neuroscience ,Synaptic pruning ,Neuroscience(all) ,Complement receptor 3 ,Biology ,Article ,medicine.anatomical_structure ,Immune system ,nervous system ,Extracellular ,medicine ,Biological neural network ,Signal transduction ,Neuroscience - Abstract
SummaryMicroglia are the resident CNS immune cells and active surveyors of the extracellular environment. While past work has focused on the role of these cells during disease, recent imaging studies reveal dynamic interactions between microglia and synaptic elements in the healthy brain. Despite these intriguing observations, the precise function of microglia at remodeling synapses and the mechanisms that underlie microglia-synapse interactions remain elusive. In the current study, we demonstrate a role for microglia in activity-dependent synaptic pruning in the postnatal retinogeniculate system. We show that microglia engulf presynaptic inputs during peak retinogeniculate pruning and that engulfment is dependent upon neural activity and the microglia-specific phagocytic signaling pathway, complement receptor 3(CR3)/C3. Furthermore, disrupting microglia-specific CR3/C3 signaling resulted in sustained deficits in synaptic connectivity. These results define a role for microglia during postnatal development and identify underlying mechanisms by which microglia engulf and remodel developing synapses.
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14. EphB-Mediated Degradation of the RhoA GEF Ephexin5 Relieves a Developmental Brake on Excitatory Synapse Formation
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Linda Hu, Michael J. Soskis, Jay B. Bikoff, Caleigh Mandel-Brehm, Seth S. Margolis, Zachary P. Wills, Hsin-Yi Henry Ho, Paul L. Greer, Alan R. Mardinly, John Salogiannis, Mustafa Sahin, David M. Lipton, and Michael E. Greenberg
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0303 health sciences ,RHOA ,biology ,Biochemistry, Genetics and Molecular Biology(all) ,HUMDISEASE ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,MOLNEURO ,Ubiquitin ligase ,Cell biology ,03 medical and health sciences ,0302 clinical medicine ,Excitatory synapse ,Ubiquitin ,Biochemistry ,Angelman syndrome ,Silent synapse ,biology.protein ,UBE3A ,medicine ,Guanine nucleotide exchange factor ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
SummaryThe mechanisms that promote excitatory synapse formation and maturation have been extensively studied. However, the molecular events that limit excitatory synapse development so that synapses form at the right time and place and in the correct numbers are less well understood. We have identified a RhoA guanine nucleotide exchange factor, Ephexin5, which negatively regulates excitatory synapse development until EphrinB binding to the EphB receptor tyrosine kinase triggers Ephexin5 phosphorylation, ubiquitination, and degradation. The degradation of Ephexin5 promotes EphB-dependent excitatory synapse development and is mediated by Ube3A, a ubiquitin ligase that is mutated in the human cognitive disorder Angelman syndrome and duplicated in some forms of Autism Spectrum Disorders (ASDs). These findings suggest that aberrant EphB/Ephexin5 signaling during the development of synapses may contribute to the abnormal cognitive function that occurs in Angelman syndrome and, possibly, ASDs.
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