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A new population analysis, ADCHα-I, based on the interpolation between the Hirshfeld (H) and the iterative Hirshfeld (H-I) methods through a parameter α and on the atomic dipole moment corrected Hirshfeld (ADCH) methodology is proposed, in combination with the constrained dipole moment density functional theory (CD-DFT) previously developed, to determine the charge distributions of force fields. Following this approach, the electronic density of the isolated molecule is determined for the value of the dipole moment that reproduces the experimental dielectric constant, in order to incorporate through this property the effects of the surrounding molecules in the liquid, and to carry on this information to the molecular simulation, the new population analysis is built to obtain the set of charges that reproduces this dipole moment. By selecting α = 1/2, one is led to charges that are larger than the ones obtained through H and ADCH and smaller than those of H-I and that incorporate, at the local level, information about the response of isolated atoms to donate or to accept charge, which is not considered in ADCH. The results obtained for several liquid properties indicate that the combination of CD-DFT with this population analysis leads to a good description of the charge distributions in force fields used in molecular simulations. [ABSTRACT FROM AUTHOR]

The use of molecular simulation methods to reproduce and predict experimental information has become an excellent option for designing new experiments. The success of these methods depends on the force field used. Their quality depends on the interaction parameters and the target properties used to obtain them. In this work, we review and extend the methodology developed by our group to obtain interaction parameters of polar liquids. In addition, an automated workflow is developed to obtain new force field parameters and the analysis of physical properties. It is applied to small molecules of various functional groups in organic chemistry. The dielectric constant, surface tension, liquid density, self-diffusion coefficient and solubility of a solute in water are used as target properties. The simulations are developed in liquid phase, liquid–vapour and liquid–liquid equilibriums. The procedure can be extended to include other target properties and has the advantage that the parameters can be obtained in shorter times. It also opens the possibility of studying a wide range of problems of scientific and technological interest. [ABSTRACT FROM AUTHOR]

The implementation of the cyclic cluster model (CCM) for molecular mechanics is presented in the framework of the computational chemistry program deMon2k. Because the CCM is particularly well-suited for the description of periodic systems with defects, it can be used for periodic QM/MM approaches where the non-periodic QM part is treated as a defect in a periodic MM surrounding. To this end, we present here the explicit formulae for the evaluation of the Ewald sum and its first- and second-order derivatives as implemented in deMon2k. The outlined implementation was tested in molecular dynamics (MD) simulations and periodic structure optimization calculations. MD simulations of an argon system were carried out using the Nosé-Hoover chain (NHC) thermostat and the Martyna-Tobias-Klein (MTK) barostat to control the temperature and pressure of the system, respectively. For the validation of CCM structure optimization a set of molecular crystals were optimized using the Ewald method for the evaluation of the electrostatic interactions. Two optimization procedures for the determination of the atomic positions and CCM cell parameters were tested. Our results show that the simultaneous optimization of the atomic positions and cell parameters is most efficient. [ABSTRACT FROM AUTHOR]

A new procedure, based on electronic structure calculations that only requires a dipole moment value for a given molecule as input and, from which the charges for all the atoms in it are uniquely determined, is developed and applied to the study of molecular fluids with classical dynamics. The dipole moment value considered for the isolated molecule is the one that reproduces the dielectric constant of its corresponding fluid. Following previous work, the Lennard-Jones parameters are determined to reproduce the liquid density and the surface tension at the liquid–vapor interface. The force field thus obtained leads to a reasonable description of several properties such as heats of vaporization, self-diffusion coefficients, shear viscosities, isothermal compressibilities, and volumetric expansion coefficients of pure substances. [ABSTRACT FROM AUTHOR]

Molecular dynamics simulations are performed to clarify the reasons for the disagreement found in a previous publication [G. A. Chapela, F. del Río, and J. Alejandre, J. Chem. Phys. 138(5), 054507 (2013)] regarding the metastability of liquid-vapor coexistence on equimolar charged binary mixtures of fluids interacting with a soft Yukawa potential with κσ = 6. The fluid-solid separation obtained with the two-phase simulation method is found to be in agreement with previous works based on free energy calculations [A. Fortini, A.-P. Hynninen, and M. Dijkstra, J. Chem. Phys. 125, 094502 (2006)] only when the CsCl structure of the solid is used. It is shown that when pressure is increased at constant temperature, the solids are amorphous having different structures, densities, and the diagonal components of the pressure tensor are not equal. A stable low density fluid-solid phase separation is not observed for temperatures above the liquid-vapor critical point. In addition, Monte Carlo and discontinuous molecular dynamics simulations are performed on the square well model of range 1.15σ. A stable fluid-solid transition is observed above the vapor-liquid critical temperature only when the solid has a face centered cubic crystalline structure. [ABSTRACT FROM AUTHOR]

The liquid-vapor phase diagrams of equal size diameter σ binary mixtures of screened potentials have been reported for several ranges of interaction using Monte Carlo simulation methods [J. B. Caballero, A. M. Puertas, A. Fernandez-Barbero, F. J. de las Nieves, J. M. Romero-Enrique, and L. F. Rull, J. Chem. Phys. 124, 054909 (2006); A. Fortini, A.-P. Hynninen, and M. Dijkstra, J. Chem. Phys. 125, 094502 (2006)]. Both works report controversial results about the stability of the phase diagram with the inverse Debye screening length κ. Caballero found stability for values of κσ up to 20 while Fortini reported stability for κσ up to 20 while Fortini reported stability for κσ <= 4. In this work a spinodal decomposition process where the liquid and vapor phases coexist through an interface in a slab geometry is used to obtain the phase equilibrium and surface properties using a discontinuous molecular dynamics simulations for mixtures of equal size particles carrying opposite charge and interacting with a mixture of attractive and repulsive Yukawa potentials at different values of κσ. An crude estimation of the triple point temperatures is also reported. The isothermal-isobaric method was also used to determine the phase stability using one phase simulations. We found that liquid-vapor coexistence is stable for values of κσ > 20 and that the critical temperatures have a maximum value at around κσ = 10, in agreement with Caballero et al. calculations. There also exists a controversy about the liquid-vapor envelope stability of the pure component attractive Yukawa model which is also discussed in the text. In addition, details about the equivalence between continuous and discontinuous molecular dynamics simulations are given, in the Appendix, for Yukawa and Lennard-Jones potentials. [ABSTRACT FROM AUTHOR]

The adsorption of sulphur dioxide (SO2) in CAU-10 is obtained with the use of advanced experimental and computational tools to gain insight into the molecular mechanisms responsible for the adsorption of SO2. It is shown that the adsorption by CAU-10 is highly energy efficient and that van der Waals interactions are the driving force that controls adsorption in this system. [ABSTRACT FROM AUTHOR]

Direct molecular dynamics simulations on interfaces at constant temperature are performed to obtain the liquid-vapor phase diagram of the two-dimensional soft primitive model, an equimolar mixture of equal size spheres carrying opposite charges. Constant temperature and pressure simulations are also carried out to check consistency with interface simulations results. In addition, an analysis of the cluster formation of mixtures of particles with charge asymmetry in the range 1:1 to 1:36 at low and high densities is performed. The number of free ions, when plotted as a function of the positive ion charge, Z+, has an oscillatory behavior and is independent of the density. The formation of aggregates is analyzed in terms of the attraction and repulsion between ions. [ABSTRACT FROM AUTHOR]

Liquid-vapor interfacial properties of square well chains are calculated. Surface tension, orthobaric densities, and vapor pressures are reported. Spinodal decomposition with a discontinuous molecular dynamics simulation program is used to obtain the results which are compared to previously published data for orthobaric densities and vapor pressures. In order to analyze the effect of the chain stiffness results for near tangent and overlapping linear chains as well as angled chains are obtained. Properties are calculated for linear chains of 2, 4, and 8 spheres for intramolecular distances of 0.97, 0.6, and 0.4 as well as for angled chains of 4 and 8 spheres and intramolecular distances of 0.4. The complete series of fully flexible near tangent square well chains is also studied (chains of 2, 4, 8, 12, and 16 particles with intramolecular distances of 0.97). The corresponding states principle applies to most of the systems considered. Critical properties values are reported as obtained from orthobaric densities, surface tensions, and vapor pressures. For the near tangent chains the critical temperatures increase with chain length but the rate of increment tends to zero for the longest chains considered. When the stiffness of the chain increases (intramolecular distance from 1 , 0.6, and 0.4) this saturation effect is either not present or reverses itself. The surface tension increases with the length of the chain while the width of the interface decreases. [ABSTRACT FROM AUTHOR]

Molecular aggregates are formed by heteronuclear vibrating square-well dumbbells. In a recent article [G. A. Chapela and J. Alejandre, J. Chem. Phys., 132(10), 104704 (2010)], it is shown that heteronuclear vibrating square-well dumbbells with a diameter ratio between particles of 1/2 and interacting potential ratio of 4 form micelles of different sizes and shapes which manifest themselves in both the liquid and vapor phases, up to and above the critical point. This means that micellization and phase separation are present simultaneously in this simple model. These systems present a maximum in the critical temperature when plotted against the potential well depth of the second particle [variant_greek_epsilon]2. In the same publication, it was speculated that the formation of micelles was responsible for the appearance of the maximum. A thorough study on this phenomena is presented here and it is found that there is a threshold on the size of the second particle and its corresponding depth of interaction potential, where the micelles are formed. If the diameter and well depth of the second particle are small enough for the first and deep enough for the second, micelles are formed. For σ2/σ1 between 0.25 and 0.65 and [variant_greek_epsilon]2/[variant_greek_epsilon]1 larger than 5.7, micelles are formed up to and above the critical temperature. Outside these ranges micelles appear only at temperatures lower than the critical point. There is a strong temperature dependence on the formation and persistence of the aggregates. For the deepest wells and large enough second particles, a gel interconnected aggregate is obtained. In this work, the micelles are formed at temperatures as low as the triple point and as high as the critical point and, in some cases, persist well above it. The presence of these maxima in critical temperatures Tc when plotted against [variant_greek_epsilon]2 as follows. At lower values of [variant_greek_epsilon]2, an increase of Tc is obtained as is expected by the increase of the attractive volume as indicated by the principle of corresponding states. As [variant_greek_epsilon]2 increases further, the formation of molecular aggregates produce a saturation effect of the deepening of the potential well by encapsulating the particles of the second kind inside the micelles, so the resulting Tc represents a new poly disperse system of molecular aggregates and not the original heteronuclear vibrating square-well dumbbells. The surface tension is also analyzed for these systems, and it is shown that decreases with increasing attraction due to the formation of molecular aggregates. [ABSTRACT FROM AUTHOR]

Discrete perturbation theory (DPT) is a powerful tool to study systems interacting with potentials that are continuous but can be approximated by a piecewise continuous function composed of horizontal segments. The main goal of this work is to analyze the effect of several variables to improve the representation of continuous potentials in order to take advantage of DPT. The main DPT parameters chosen for the purpose are the starting location and size of the horizontal segments used to divide the full range of the potential and its maximum reach. We also studied the effect of having each segment aligned to the left, to the right, or centered on the continuous function. The properties selected to asses the success of this strategy are the orthobaric densities and their corresponding critical points. Critical parameters and orthobaric densities were evaluated by DPT for each of an ample set of variables and compared with their values calculated via discontinuous molecular dynamics. The best sets of DPT parameters are chosen so as to give equations of state that represent accurately the Lennard-Jones and Yukawa fluids. [ABSTRACT FROM AUTHOR]

Surface tensions and liquid-vapor orthobaric densities are calculated for a wide variety of vibrating square well dumbbells using discontinuous molecular dynamics simulations. The size of the vibration well, the elongation or bond distance of the two particles of the dumbbell, the asymmetry in size (and interaction range) of the two particles, and the depth of the interaction well are the variables whose effects are systematically evaluated in this work. Extensive molecular dynamics simulations were carried out and the orthobaric liquid-vapor densities are compared with those obtained previously by other authors using different methods of simulation for rigid and vibrating square well dumbbells. Surface tension values are reported for the first time for homonuclear and heteronuclear vibrating square well dumbbells as well as for all the simulated series. The molecular dynamics results of tangent homonuclear dumbbells are compared with those from Monte Carlo simulations also obtained in this work, as a way of checking the order of magnitude of the molecular dynamics results. The size of the vibration well is shown to have a small influence on the resulting properties. Decreasing elongation and the size of the second particle increase critical temperatures, liquid densities, and surface tensions. Moderate increases in the depth of the interaction well have the same effect. For larger asymmetries of the depth of the interaction well on the dumbbell particles, a strong association phenomenon is observed and the main effects are a maximum on the critical temperature for increasing well depth and a decrease in the surface tension. [ABSTRACT FROM AUTHOR]

The liquid-vapor phase equilibria and surface tension of the TIP4P/2005 water model is obtained by using the Ewald summation method to determine the long range Lennard-Jones and electrostatic interactions. The method is implemented in a straightforward manner into standard simulation programs. The computational cost of using Ewald sums in dispersion interactions of water is estimated in direct simulation of interfaces. The results of this work at 300 K show a dramatic change in surface tension with an oscillatory behavior for surface areas smaller than 5×5σ2, where σ is the Lennard-Jones oxygen diameter. The amplitude of such oscillations substantially decreases with temperature. Finite size effects are less important on coexisting densities. Phase equilibria and interfacial properties can be determined using a small number of water molecules; their fluctuations are around the same size of simulation error at all temperatures, even in systems where the interfaces are separated a few molecular diameters only. The difference in surface tension of this work compared to the results of other authors is not significant (on the contrary, there is a good agreement). What should be stressed is the different and more consistent approach to obtain the surface tension using the Ewald sums for dispersion interactions. There are two relevant aspects at the interface: An adsorption of water molecules is observed at small surface areas and its thickness systematically increases with system size. [ABSTRACT FROM AUTHOR]

The crystal formation of NaCl in water is studied by extensive molecular dynamics simulations. Ionic solutions at room temperature and various concentrations are studied using the SPC/E and TIP4P/2005 water models and seven force fields of NaCl. Most force fields of pure NaCl fail to reproduce the experimental density of the crystal, and in solution some favor dissociation at saturated conditions, while others favor crystal formation at low concentration. A new force field of NaCl is proposed, which reproduces the experimental phase diagram in the solid, liquid, and vapor regions. This force field overestimates the solubility of NaCl in water at saturation conditions when used with standard Lorentz–Berthelot combining rules for the ion-water pair potentials. It is shown that precipitation of ions is driven by the short range interaction between Cl–H pairs, a term which is generally missing in the simulation of ionic solutions. The effects of intramolecular flexibility of water on the solubility of NaCl ions are analyzed and is found to be small compared to rigid models. A flexible water model, extending the rigid SPC/E, is proposed, which incorporates Lennard-Jones interactions centered on the hydrogen atoms. This force field gives liquid-vapor coexisting densities and surface tensions in better agreement with experimental data than the rigid SPC/E model. The Cl–H, Na–O, and Cl–O pair distribution functions of the rigid and flexible models agree well with experiment. The predicted concentration dependence of the electric conductivity is in fair agreement with available experimental data. [ABSTRACT FROM AUTHOR]

The Wolf method for the calculation of electrostatic interactions is applied in a liquid phase and at the liquid-vapor interface of water and its results are compared with those from the Ewald sums method. Molecular dynamics simulations are performed to calculate the radial distribution functions at room temperature. The interface simulations are used to obtain the coexisting densities and surface tension along the coexistence curve. The water model is a flexible version of the extended simple point charge model. The Wolf method gives good structural results, fair coexistence densities, and poor surface tensions as compared with those obtained using the Ewald sums method. [ABSTRACT FROM AUTHOR]

We have performed molecular dynamics simulations of dense liquids using nonconformal and Gaussian potential models. We investigate the effect of the softness of the potential on the pressure tensor of liquids and dense fluids when the simulations are carried out using parallelepiped cells. The combination of periodic boundary conditions and small cross sectional areas induces an anisotropy in the diagonal components of the pressure tensor. This anisotropy results in an artificial stress in the system that has to be taken into account in simulations of explicit interfaces, where the artificial stress introduces errors in the computation of the surface tension. At high liquid densities the stress anisotropy exhibits an oscillatory dependence with the cross sectional area of the simulation box. We find that the softness of the potential has a dramatic effect on the amplitude of the oscillations, which can be significantly reduced in soft potentials, such as those used in the modeling of hydrocarbon liquids or polymers. [ABSTRACT FROM AUTHOR]

The electrostatic interactions in dissipative particle dynamics (DPD) simulations are calculated using the standard Ewald [Ann. Phys. 64, 253 (1921)] sum method. Charge distributions on DPD particles are included to prevent artificial ionic pair formation. This proposal is an alternative method to that introduced recently by Groot [J. Chem. Phys. 118, 11265 (2003)] where the electrostatic field was solved locally on a lattice. The Ewald method is applied to study a bulk electrolyte and polyelectrolyte-surfactant solutions. The structure of the fluid is analyzed through the radial distribution function between charged particles. The results are in good agreement with those reported by Groot for the same systems. We also calculated the radius of gyration of a polyelectrolyte in salt solution as a function of solution pH and degree of ionization of the chain. The radius of gyration increases with the net charge of the polymer in agreement with the trend found in static light scattering experiments of polystyrene sulfonate solutions. [ABSTRACT FROM AUTHOR]

An operational procedure to obtain the intrinsic structure of liquid surfaces is applied here to a molecular dynamics simulation of water, with a model of point charges for the molecular interactions. The method, which had been recently proposed and used for simple fluids, is successfully extended to a molecular liquid with the complex bond structure of water. The elimination of the capillary wave fluctuations, in the intrinsic density and orientation profiles, gives a new overall view of the water surface, at the sharpest molecular level, and without the size-dependent broadening observed in the mean profiles. The molecules belonging to the outer liquid layer are clearly identified, and we find that only these molecules exhibit a clear preferential orientation to lie flat on the surface. Moreover, there is a strong correlation between the dipolar structure and the local curvatures of the intrinsic surface, so that at the extrusions of the intrinsic surface the molecular dipoles point preferentially toward the vapor side of the interface. Finally, we have found an intrinsic density layering structure, although the inner structure is strongly damped beyond the second layer. [ABSTRACT FROM AUTHOR]

We have performed dissipative particle dynamics (DPD) simulations to evaluate the effect that finite size of transversal area has on stress anisotropy and interfacial tension. The simulations were carried out in one phase and two phases in parallelepiped cells. In one-phase simulations there is no finite-size effect on stress anisotropy when the simulation is performed using repulsive forces. However, an oscillatory function of stress anisotropy is found for attractive-repulsive interactions. In the case of liquid-liquid interfaces with repulsive interaction between molecules, there is only a small effect of surface area on interfacial tension when the simulations are performed using the Monte Carlo method at constant temperature and normal pressure. An important but artificial finite-size effect of interfacial area on surface tension is found in simulations in the canonical ensemble. Reliable results of interfacial tension from DPD simulations can be obtained using small systems, less than 2000 particles, when they interact exclusively with repulsive forces. [ABSTRACT FROM AUTHOR]

The simulation results of surface tension at the liquid-vapor interface are presented for fluids interacting with Lennard Jones and square-well potentials. From the simulation of liquids we have reported [M. González-Melchor et al., J. Chem. Phys. 122, 4503 (2005)] that the components of pressure tensor in parallelepiped boxes are not the same when periodic boundary conditions and small transversal areas are used. This fact creates an artificial oscillatory stress anisotropy in the system with even negative values. By doing direct simulations of interfaces we show in this work that surface tension has also an oscillatory decay at small surface areas; this behavior is opposite to the monotonic decay reported previously for the Lennard Jones fluid. It is shown that for small surface areas, the surface tension of the square-well potential artificially takes negative values and even increases with temperature. The calculated surface tension using a direct simulation of interfaces might have two contributions: one from finite-size effects of interfacial areas due to box geometry and another from the interface. Thus, it is difficult to evaluate the true surface tension of an interface when small surface areas are used. Care has to be taken to use the direct simulation method of interfaces to evaluate the predicted surface tension as a function of interfacial area from capillary-wave theory. The oscillations of surface tension decay faster at temperatures close to the critical point. It is also discussed that a surface area does not show any important effect on coexisting densities, making this method reliable to calculate bulk coexisting properties using small systems. [ABSTRACT FROM AUTHOR]

We report molecular dynamics computer simulations of the surface tension and interfacial thickness of ionic liquid-vapor interfaces modeled with a soft core primitive model potential. We find that the surface tension shows an anomalous oscillatory behavior with interfacial area. This observation is discussed in terms of finite size effects introduced by the periodic boundary conditions employed in computer simulations. Otherwise we show that the thickness of the liquid-vapor interface increases with surface area as predicted by the capillary wave theory. Data on the surface tension of size-asymmetric ionic liquids are reported and compared with experimental data of molten salts. Our data suggest that the surface tensions of size-asymmetric ionic liquids do not follow a corresponding states law. [ABSTRACT FROM AUTHOR]

Finite size effects due to periodic boundary conditions are investigated using computer simulations in the canonical ensemble. We study liquids with densities corresponding to typical liquid coexistence densities, and temperatures between the triple and critical points. The components of the pressure tensor are computed in order to analyze the finite size effects arising from the size and geometry of the simulation box. Two different box geometries are considered: cubic and parallelepiped. As expected the pressure tensor is isotropic in cubic boxes, but it becomes anisotropic for small noncubic boxes. We argue this is the origin of the anomalous behavior observed recently in the computation of the surface tension of liquid-vapor interfaces. Otherwise, we find that the bulk pressure is sensitive to the box geometry when small simulation boxes are considered. These observations are general and independent of the model liquid considered. We report results for liquids interacting through short range forces, square well and Lennard-Jones, and also long range Coulombic interactions. The effect that small surface areas have on the surface tension is discussed, and some preliminary results at the liquid vapor-interface for the square well potential are given. [ABSTRACT FROM AUTHOR]

Properties of the liquid–vapor interface of square-well fluids with ranges of interaction λ=1.5, 2.0, and 3.0 are obtained by Monte Carlo simulations and from square-gradient theories that combine the Carnahan–Starling equation of state for hard spheres with the second and third virial coefficients. The predicted surface tensions show good agreement with the simulation results for λ=2 and for λ=3 in a temperature range reasonably close to the critical point, 0.8≤T/Tc≤0.95. As expected, the surface tension increases with the range of interaction and decreases monotonically with temperature. A comparison between theory and simulation results is also given for the width of the interface and for the coexistence curves for the different interaction ranges. © 2004 American Institute of Physics. [ABSTRACT FROM AUTHOR]

Canonical Monte Carlo (NVT-MC) simulations were performed to obtain surface tension and coexistence densities at the liquid–vapor interface of one-site associating Lennard-Jones and hard-core Yukawa fluids, as functions of association strength and temperature. The method to obtain the components of the pressure tensor from NVT-MC simulations was validated by comparing the equation of state of the associative hard sphere system with that coming from isothermal–isobaric Monte Carlo simulations. Surface tension of the associative Lennard-Jones fluid determined from NVT-MC is compared with previously reported results obtained by molecular dynamics simulations of a pseudomixture model of monomers and dimers. A good agreement was found between both methods. Values of surface tension of associative hard-core Yukawa fluids are presented here for the first time. © 2004 American Institute of Physics. [ABSTRACT FROM AUTHOR]

We performed Monte Carlo simulations in the canonical ensemble on the liquid-vapor interface of a square well fluid with interaction range of λ = 1.5σ. The system contains a liquid slab surrounded by vapor. The surface tension is calculated during simulations by using an original procedure that allows the calculation of the pressure tensor components. The surface tension decreases monotonically with temperature. Coexisting densities and pressure along the liquid-vapor coexistence line have also been obtained and good agreement is found with results calculated from bulk simulations. [ABSTRACT FROM AUTHOR]

The formation of cavities in ionic liquids in the vicinity of the liquid binodal curve is investigated by means of Monte Carlo simulations of the restricted primitive model (RPM). Analysis of the cavity size distribution functions provides a quantitative view of the hole sizes arising in ionic liquids when approaching the coexistence region. Cavities of sizes 0.1–1 nm are formed, the larger cavities being favored by the Coulombic forces. The mean cavity size grows with the square root of the temperature. We compute the reversible work needed to create a cavity in the ionic liquid and it is used to estimate the surface tension of the ionic liquid–vapor interface. The accuracy of theoretical approaches based on the scaled particle theory and Ornstein–Zernike equation to estimate the cavity work of formation in ionic liquids is discussed. We find that both simulations and integral equations predict density depletion with increasing cavity size, suggesting the existence of surface drying in ionic liquids. © 2003 American Institute of Physics. [ABSTRACT FROM AUTHOR]