141 results on '"Alexander Shestopalov"'
Search Results
2. Are circadian rhythms in disarray in patients with chronic critical illness?
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Mikhail Kanarskii, Julia Nekrasova, Ekaterina Kondratieva, Ilya Borisov, Elena Simenel, Yurii Sviryaev, Pranil Pradhan, Kirill Gorshkov, Alexander Shestopalov, and Marina Petrova
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Specialties of internal medicine ,RC581-951 - Abstract
Annotation (Abstract): Aim: The aim of our study is to assess circadian rhythms in patients with chronic critical illness due to severe brain injury in intensive care unit by establishing the relation between melatonin and cortisol secretion, considering astronomical time and the sleep-wake cycle in chronic critical illness. Materials and methods: The study included 54 adult patients with chronic critical illness who resided in the intensive care unit for at least 30 days. The level of consciousness was determined using the CRS-R scale. We did the continuous electroencephalographic (EEG) monitoring with polygraphic leads for 24 h. Also, we determined the serum levels of cortisol and melatonin using the tandem mass spectrometry method with ultra-performance liquid chromatography. Results: 90.74 % of patients had one acrophase in melatonin secretion curve, which suggests the preservation of the rhythmic secretion of melatonin. These acrophases of the melatonin rhythm occurred during the night time in 91.8 % of patients. Most of the patients (69.3 %) slept during the period from 2:00 to 4:00 a.m. The evening levels of cortisol and melatonin had an inverse relation (rs=0.61, p
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- 2024
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3. Pinnipeds and avian influenza: a global timeline and review of research on the impact of highly pathogenic avian influenza on pinniped populations with particular reference to the endangered Caspian seal (Pusa caspica)
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Alimurad Gadzhiev, Guy Petherbridge, Kirill Sharshov, Ivan Sobolev, Alexander Alekseev, Marina Gulyaeva, Kirill Litvinov, Ivan Boltunov, Abdulgamid Teymurov, Alexander Zhigalin, Madina Daudova, and Alexander Shestopalov
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pinnipeds ,Caspian seal ,avian influenza viruses ,HPAI H5N1 ,Caspian Sea nature conservation ,marine mammals ,Microbiology ,QR1-502 - Abstract
This study reviews chronologically the international scientific and health management literature and resources relating to impacts of highly pathogenic avian influenza (HPAI) viruses on pinnipeds in order to reinforce strategies for the conservation of the endangered Caspian seal (Pusa caspica), currently under threat from the HPAI H5N1 subtype transmitted from infected avifauna which share its haul-out habitats. Many cases of mass pinniped deaths globally have occurred from HPAI spill-overs, and are attributed to infected sympatric aquatic avifauna. As the seasonal migrations of Caspian seals provide occasions for contact with viruses from infected migratory aquatic birds in many locations around the Caspian Sea, this poses a great challenge to seal conservation. These are thus critical locations for the surveillance of highly pathogenic influenza A viruses, whose future reassortments may present a pandemic threat to humans.
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- 2024
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4. Highly Pathogenic Avian Influenza A(H5N1) Virus–Induced Mass Death of Wild Birds, Caspian Sea, Russia, 2022
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Ivan Sobolev, Alimurad Gadzhiev, Kirill Sharshov, Olesia Ohlopkova, Kristina Stolbunova, Artem Fadeev, Nikita Dubovitskiy, Alexandra Glushchenko, Victor Irza, Maxim Perkovsky, Kirill Litvinov, Natalia Meshcheriakova, Guy Petherbridge, and Alexander Shestopalov
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highly pathogenic avian influenza ,H5N1 ,HPAI virus ,waterbirds ,wild birds ,outbreak ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
In May 2022, we observed a substantial die-off of wild migratory waterbirds on Maliy Zhemchuzhniy Island in the Caspian Sea, Russia. The deaths were caused by highly pathogenic avian influenza A(H5N1) clade 2.3.4.4.b virus. Continued surveillance of influenza viruses in wild bird populations is needed to predict virus spread over long distances.
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- 2023
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5. Avian Influenza Virus and Avian Paramyxoviruses in Wild Waterfowl of the Western Coast of the Caspian Sea (2017–2020)
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Tatyana Murashkina, Kirill Sharshov, Alimurad Gadzhiev, Guy Petherbridge, Anastasiya Derko, Ivan Sobolev, Nikita Dubovitskiy, Arina Loginova, Olga Kurskaya, Nikita Kasianov, Marsel Kabilov, Junki Mine, Yuko Uchida, Ryota Tsunekuni, Takehiko Saito, Alexander Alekseev, and Alexander Shestopalov
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avian influenza viruses ,phylogenetics ,avian paramyxoviruses ,avian avulaviruses ,NDV ,APMV-4 ,Microbiology ,QR1-502 - Abstract
The flyways of many different wild waterfowl pass through the Caspian Sea region. The western coast of the middle Caspian Sea is an area with many wetlands, where wintering grounds with large concentrations of birds are located. It is known that wild waterfowl are a natural reservoir of the influenza A virus. In the mid-2000s, in the north of this region, the mass deaths of swans, gulls, and pelicans from high pathogenicity avian influenza virus (HPAIV) were noted. At present, there is still little known about the presence of avian influenza virus (AIVs) and different avian paramyxoviruses (APMVs) in the region’s waterfowl bird populations. Here, we report the results of monitoring these viruses in the wild waterfowl of the western coast of the middle Caspian Sea from 2017 to 2020. Samples from 1438 individuals of 26 bird species of 7 orders were collected, from which 21 strains of AIV were isolated, amounting to a 1.46% isolation rate of the total number of samples analyzed (none of these birds exhibited external signs of disease). The following subtypes were determined and whole-genome nucleotide sequences of the isolated strains were obtained: H1N1 (n = 2), H3N8 (n = 8), H4N6 (n = 2), H7N3 (n = 2), H8N4 (n = 1), H10N5 (n = 1), and H12N5 (n = 1). No high pathogenicity influenza virus H5 subtype was detected. Phylogenetic analysis of AIV genomes did not reveal any specific pattern for viruses in the Caspian Sea region, showing that all segments belong to the Eurasian clades of classic avian-like influenza viruses. We also did not find the amino acid substitutions in the polymerase complex (PA, PB1, and PB2) that are critical for the increase in virulence or adaptation to mammals. In total, 23 hemagglutinating viruses not related to influenza A virus were also isolated, of which 15 belonged to avian paramyxoviruses. We were able to sequence 12 avian paramyxoviruses of three species, as follows: Newcastle disease virus (n = 4); Avian paramyxovirus 4 (n = 5); and Avian paramyxovirus 6 (n = 3). In the Russian Federation, the Newcastle disease virus of the VII.1.1 sub-genotype was first isolated from a wild bird (common pheasant) in the Caspian Sea region. The five avian paramyxovirus 4 isolates obtained belonged to the common clade in Genotype I, whereas phylogenetic analysis of three isolates of Avian paramyxovirus 6 showed that two isolates, isolated in 2017, belonged to Genotype I and that an isolate identified in 2020 belonged to Genotype II. The continued regular monitoring of AIVs and APMVs, the obtaining of data on the biological properties of isolated strains, and the accumulation of information on virus host species will allow for the adequate planning of epidemiological measures, suggest the most likely routes of spread of the virus, and assist in the prediction of the introduction of the viruses in the western coastal region of the middle Caspian Sea.
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- 2024
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6. Coexistence of superior mesenteric artery syndrome and nutcracker phenomenon
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Hasan Khan, MD, Esraa Al-Jabbari, MD, Neel Shroff, MD, Maggie Barghash, MD, Alexander Shestopalov, MD, and Peeyush Bhargava, MD, MBA
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Superior mesenteric artery syndrome ,Nutcracker syndrome ,Tomography ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Superior mesenteric artery (SMA) syndrome is a rare cause of upper gastrointestinal obstruction. Nutcracker syndrome occurs as the result of external compression of the left renal vein. Although they share a similar pathophysiology, SMA and nutcracker syndrome occurring simultaneously is rare. In this case report, we discuss the pathophysiology and unique computed tomography findings in a 25-year-old female patient diagnosed with SMA syndrome who was also incidentally found to have a coexisting nutcracker phenomenon. Due to similar pathogenesis, radiologists should consider the possibility of coexistence of these rare syndromes in appropriate patients.
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- 2022
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7. Features of SARS-CoV-2 Replication in Various Types of Reptilian and Fish Cell Cultures
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Yulia Kononova, Lyubov Adamenko, Evgeniya Kazachkova, Mariya Solomatina, Svetlana Romanenko, Anastasia Proskuryakova, Yaroslav Utkin, Marina Gulyaeva, Anastasia Spirina, Elena Kazachinskaia, Natalia Palyanova, Oksana Mishchenko, Alexander Chepurnov, and Alexander Shestopalov
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SARS-CoV-2 ,aquatic ecosystems ,fish cells ,reptile cells ,TH-1 cell culture ,Microbiology ,QR1-502 - Abstract
Background: SARS-CoV-2 can enter the environment from the feces of COVID-19 patients and virus carriers through untreated sewage. The virus has shown the ability to adapt to a wide range of hosts, so the question of the possible involvement of aquafauna and animals of coastal ecosystems in maintaining its circulation remains open. Methods: the aim of this work was to study the tropism of SARS-CoV-2 for cells of freshwater fish and reptiles, including those associated with aquatic and coastal ecosystems, and the effect of ambient temperature on this process. In a continuous cell culture FHM (fathead minnow) and diploid fibroblasts CGIB (silver carp), SARS-CoV-2 replication was not maintained at either 25 °C or 29 °C. At 29 °C, the continuous cell culture TH-1 (eastern box turtle) showed high susceptibility to SARS-CoV-2, comparable to Vero E6 (development of virus-induced cytopathic effect (CPE) and an infectious titer of 7.5 ± 0.17 log10 TCID50/mL on day 3 after infection), and primary fibroblasts CNI (Nile crocodile embryo) showed moderate susceptibility (no CPE, infectious titer 4.52 ± 0.14 log10 TCID50/mL on day 5 after infection). At 25 °C, SARS-CoV-2 infection did not develop in TH-1 and CNI. Conclusions: our results show the ability of SARS-CoV-2 to effectively replicate without adaptation in the cells of certain reptile species when the ambient temperature rises.
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- 2023
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8. Highly Pathogenic Avian Influenza A(H5N8) Virus Clade 2.3.4.4b, Western Siberia, Russia, 2020
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Ivan Sobolev, Kirill Sharshov, Nikita Dubovitskiy, Olga Kurskaya, Alexander Alekseev, Sergey Leonov, Yuriy Yushkov, Victor Irza, Andrey Komissarov, Artem Fadeev, Daria Danilenko, Junki Mine, Ryota Tsunekuni, Yuko Uchida, Takehiko Saito, and Alexander Shestopalov
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influenza ,H5N8 ,reassortment ,avian influenza virus ,clade 2.3.4.4b ,Western Siberia ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Two variants of highly pathogenic avian influenza A(H5N8) virus were detected in dead poultry in Western Siberia, Russia, during August and September 2020. One variant was represented by viruses of clade 2.3.4.4b and the other by a novel reassortant between clade 2.3.4.4b and Eurasian low pathogenicity avian influenza viruses circulating in wild birds.
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- 2021
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9. Does Avian Coronavirus Co-Circulate with Avian Paramyxovirus and Avian Influenza Virus in Wild Ducks in Siberia?
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Kirill Sharshov, Nikita Dubovitskiy, Anastasiya Derko, Arina Loginova, Ilya Kolotygin, Dmitry Zhirov, Ivan Sobolev, Olga Kurskaya, Alexander Alekseev, Alexey Druzyaka, Pavel Ktitorov, Olga Kulikova, Guimei He, Zhenghuan Wang, Yuhai Bi, and Alexander Shestopalov
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avian coronaviruses ,Gammacoronavirus ,Deltacoronavirus ,ACoV ,wild birds ,co-circulation ,Microbiology ,QR1-502 - Abstract
Avian coronaviruses (ACoV) have been shown to be highly prevalent in wild bird populations. More work on avian coronavirus detection and diversity estimation is needed for the breeding territories of migrating birds, where the high diversity and high prevalence of Orthomyxoviridae and Paramyxoviridae have already been shown in wild birds. In order to detect ACoV RNA, we conducted PCR diagnostics of cloacal swab samples from birds, which we monitored during avian influenza A virus surveillance activities. Samples from two distant Asian regions of Russia (Sakhalin region and Novosibirsk region) were tested. Amplified fragments of the RNA-dependent RNA-polymerase (RdRp) of positive samples were partially sequenced to determine the species of Coronaviridae represented. The study revealed a high presence of ACoV among wild birds in Russia. Moreover, there was a high presence of birds co-infected with avian coronavirus, avian influenza virus, and avian paramyxovirus. We found one case of triple co-infection in a Northern Pintail (Anas acuta). Phylogenetic analysis revealed the circulation of a Gammacoronavirus species. A Deltacoronavirus species was not detected, which supports the data regarding the low prevalence of deltacoronaviruses among surveyed bird species.
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- 2023
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10. Dominant subtype switch in avian influenza viruses during 2016–2019 in China
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Yuhai Bi, Juan Li, Shanqin Li, Guanghua Fu, Tao Jin, Cheng Zhang, Yongchun Yang, Zhenghai Ma, Wenxia Tian, Jida Li, Shuqi Xiao, Liqiang Li, Renfu Yin, Yi Zhang, Lixin Wang, Yantao Qin, Zhongzi Yao, Fanyu Meng, Dongfang Hu, Delong Li, Gary Wong, Fei Liu, Na Lv, Liang Wang, Lifeng Fu, Yang Yang, Yun Peng, Jinmin Ma, Kirill Sharshov, Alexander Shestopalov, Marina Gulyaeva, George F. Gao, Jianjun Chen, Yi Shi, William J. Liu, Dong Chu, Yu Huang, Yingxia Liu, Lei Liu, Wenjun Liu, Quanjiao Chen, and Weifeng Shi
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Science - Abstract
In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of variants have emerged since 2016 that pose an increased risk to humans. They highlight the importance of continuous genome surveillance of circulating influenza strains.
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- 2020
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11. Virological and Genetic Characterization of the Unusual Avian Influenza H14Nx Viruses in the Northern Asia
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Nikita Dubovitskiy, Anastasiya Derko, Ivan Sobolev, Elena Prokopyeva, Tatyana Murashkina, Maria Solomatina, Olga Kurskaya, Andrey Komissarov, Artem Fadeev, Daria Danilenko, Polina Petrova, Junki Mine, Ryota Tsunekuni, Yuko Uchida, Takehiko Saito, Alexander Shestopalov, and Kirill Sharshov
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Influenza A virus ,Avian influenza ,H14 subtype ,H14N9 ,Siberia ,wild birds ,Microbiology ,QR1-502 - Abstract
Wild aquatic birds are generally identified as a natural reservoir of avian influenza viruses (AIVs), where a high diversity of subtypes has been detected. Some AIV subtypes are considered to have relatively low prevalence in wild bird populations. Six-year AIV surveillance in Siberia revealed sporadic cases of the rarely identified H14-subtype AIV circulation. Complete genome sequencing of three H14 isolates were performed, and the analysis indicated interconnections between low pathogenic avian influenza (LPAI) viruses. We conducted hemagglutination inhibition and virus neutralization assays, estimated the susceptibility of isolates to neuraminidase inhibitors, and characterized receptor specificity. Our study revealed circulation of a new H14N9 subtype described for the first time. However, the low prevalence of the H14-subtype AIV population may be the reason for the underestimation of the diversity of H14-subtype AIVs. According to the available data, a region in which H14-subtype viruses were detected several times in 2007–2022 in the Eastern Hemisphere is Western Siberia, while the virus was also detected once in South Asia (Pakistan). Phylogenetic analysis of HA segment sequences revealed the circulation of two clades of H14-subtype viruses originated from initial 1980s Eurasian clade; the first was detected in Northern America and the second in Eurasia.
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- 2023
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12. Genomic and Epidemiological Features of COVID-19 in the Novosibirsk Region during the Beginning of the Pandemic
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Natalia Palyanova, Ivan Sobolev, Alexander Alekseev, Alexandra Glushenko, Evgeniya Kazachkova, Alexander Markhaev, Yulia Kononova, Marina Gulyaeva, Lubov Adamenko, Olga Kurskaya, Yuhai Bi, Yuhua Xin, Kirill Sharshov, and Alexander Shestopalov
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SARS-CoV-2 ,first wave ,Russia ,epidemiology ,COVID-19 ,phylogeny ,Microbiology ,QR1-502 - Abstract
In this retrospective, single-center study, we conducted an analysis of 13,699 samples from different individuals obtained from the Federal Research Center of Fundamental and Translational Medicine, from 1 April to 30 May 2020 in Novosibirsk region (population 2.8 million people). We identified 6.49% positive for SARS-CoV-2 cases out of the total number of diagnostic tests, and 42% of them were from asymptomatic people. We also detected two asymptomatic people, who had no confirmed contact with patients with COVID-19. The highest percentage of positive samples was observed in the 80+ group (16.3%), while among the children and adults it did not exceed 8%. Among all the people tested, 2423 came from a total of 80 different destinations and only 27 of them were positive for SARS-CoV-2. Out of all the positive samples, 15 were taken for SARS-CoV-2 sequencing. According to the analysis of the genome sequences, the SARS-CoV-2 variants isolated in the Novosibirsk region at the beginning of the pandemic belonged to three phylogenetic lineages according to the Pangolin classification: B.1, B.1.1, and B.1.1.129. All Novosibirsk isolates contained the D614G substitution in the Spike protein, two isolates werecharacterized by an additional M153T mutation, and one isolate wascharacterized by the L5F mutation.
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- 2022
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13. Detection of New H5N1 High Pathogenicity Avian Influenza Viruses in Winter 2021–2022 in the Far East, Which Are Genetically Close to Those in Europe
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Norikazu Isoda, Manabu Onuma, Takahiro Hiono, Ivan Sobolev, Hew Yik Lim, Kei Nabeshima, Hisako Honjyo, Misako Yokoyama, Alexander Shestopalov, and Yoshihiro Sakoda
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bird migration ,genetic profile ,high pathogenicity avian influenza ,H5N1 ,wild birds ,Microbiology ,QR1-502 - Abstract
Many high pathogenicity avian influenza (HPAI) cases in wild birds due to H5N1 HPAI virus (HPAIV) infection were reported in northern Japan in the winter of 2021–2022. To investigate the epidemiology of HPAIVs brought to Japan from surrounding areas, a genetic analysis of H5 HPAIVs isolated in northern Japan was performed, and the pathogenicity of the HPAIV in chickens was assessed by experimental infection. Based on the genetic analysis of the hemagglutinin gene, pathogenic viruses detected in northern Japan as well as one in Sakhalin, the eastern part of Russia, were classified into the same subgroup as viruses prevalent in Europe in the same season but distinct from those circulating in Asia in winter 2020–2021. High identities of all eight segment sequences of A/crow/Hokkaido/0103B065/2022 (H5N1) (Crow/Hok), the representative isolates in northern Japan in 2022, to European isolates in the same season could also certify the unlikeliness of causing gene reassortment between H5 HPAIVs and viruses locally circulating in Asia. According to intranasal challenge results in six-week-old chickens, 50% of the chicken-lethal dose of Crow/Hok was calculated as 104.5 times of the 50% egg-infectious dose. These results demonstrated that the currently prevalent H5 HPAIVs could spread widely from certain origins throughout the Eurasian continent, including Europe and the Far East, and implied a possibility that contagious viruses are gathered in lakes in the northern territory via bird migration. Active monitoring of wild birds at the global level is essential to estimate the geographical source and spread dynamics of HPAIVs.
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- 2022
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14. Novel reassortant of H1N1 swine influenza virus detected in pig population in Russia
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Ivan Sobolev, Olga Kurskaya, Sergey Leonov, Marsel Kabilov, Tatyana Alikina, Alexander Alekseev, Yuriy Yushkov, Takehiko Saito, Yuko Uchida, Junki Mine, Alexander Shestopalov, and Kirill Sharshov
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Swine ,influenza ,reassortant ,phylogeny ,H1N1 ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
ABSTRACTPigs play an important role in interspecies transmission of the influenza virus, particularly as “mixing vessels” for reassortment. Two influenza A/H1N1 virus strains, A/swine/Siberia/1sw/2016 and A/swine/Siberia/4sw/2017, were isolated during a surveillance of pigs from private farms in Russia from 2016 to 2017. There was a 10% identity difference between the HA and NA nucleotide sequences of isolated strains and the most phylogenetically related sequences (human influenza viruses of 1980s). Simultaneously, genome segments encoding internal proteins were found to be phylogenetically related to the A/H1N1pdm09 influenza virus. In addition, two amino acids (129–130) were deleted in the HA of A/swine/Siberia/4sw/2017 compared to that of A/swine/Siberia/1sw/2016 HA.
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- 2019
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15. Anti-Influenza Activity of Medicinal Material Extracts from Qinghai–Tibet Plateau
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Olga Kurskaya, Elena Prokopyeva, Hongtao Bi, Ivan Sobolev, Tatyana Murashkina, Alexander Shestopalov, Lixin Wei, and Kirill Sharshov
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extract ,A. sativa ,H. vulgare ,H. rhamnoides ,L. ruthenicum ,N. tangutorum ,Microbiology ,QR1-502 - Abstract
To discover sources for novel anti-influenza drugs, we evaluated the antiviral potential of nine extracts from eight medicinal plants and one mushroom (Avena sativa L., Hordeum vulgare Linn. var. nudum Hook. f., Hippophae rhamnoides Linn., Lycium ruthenicum Murr., Nitraria tangutorum Bobr., Nitraria tangutorum Bobr. by-products, Potentilla anserina L., Cladina rangiferina (L.) Nyl., and Armillaria luteo-virens) from the Qinghai–Tibetan plateau against the influenza A/H3N2 virus. Concentrations lower than 125 μg/mL of all extracts demonstrated no significant toxicity in MDCK cells. During screening, seven extracts (A. sativa, H. vulgare, H. rhamnoides, L. ruthenicum, N. tangutorum, C. rangiferina, and A. luteo-virens) exhibited antiviral activity, especially the water-soluble polysaccharide from the fruit body of the mushroom A. luteo-virens. These extracts significantly reduced the infectivity of the human influenza A/H3N2 virus in vitro when used at concentrations of 15.6–125 μg/mL. Two extracts (N. tangutorum by-products and P. anserina) had no A/H3N2 virus inhibitory activity. Notably, the extract obtained from the fruits of N. tangutorum and N. tangutorum by-products exhibited different anti-influenza effects. The results suggest that extracts of A. sativa, H. vulgare, H. rhamnoides, L. ruthenicum, N. tangutorum, C. rangiferina, and A. luteo-virens contain substances with antiviral activity, and may be promising sources of new antiviral drugs.
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- 2022
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16. IgG Study of Blood Sera of Patients with COVID-19
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Elena Kazachinskaia, Alexander Chepurnov, Dmitry Shcherbakov, Yulia Kononova, Teresa Saroyan, Marina Gulyaeva, Daniil Shanshin, Valeriya Romanova, Olga Khripko, Michail Voevoda, and Alexander Shestopalov
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SARS-CoV-2 ,COVID-19 ,antibody specificity ,recombinant proteins ,virus neutralization ,Medicine - Abstract
The COVID-19 pandemic, which began at the end of 2019 in Wuhan, has affected 220 countries and territories to date. In the present study, we studied humoral immunity in samples of the blood sera of COVID-19 convalescents of varying severity and patients who died due to this infection, using native SARS-CoV-2 and its individual recombinant proteins. The cross-reactivity with SARS-CoV (2002) was also assessed. We used infectious and inactivated SARS-CoV-2/human/RUS/Nsk-FRCFTM-1/2020 strain, inactivated SARS-CoV strain (strain Frankfurt 1, 2002), recombinant proteins, and blood sera of patients diagnosed with COVID-19. The blood sera from patients were analyzed by the Virus Neutralization test, Immunoblotting, and ELISA. The median values and mean ± SD of titers of specific and cross-reactive antibodies in blood sera tested in ELISA were mainly distributed in the following descending order: N > trimer S > RBD. ELISA and immunoblotting revealed a high cross-activity of antibodies specific to SARS-CoV-2 with the SARS-CoV antigen (2002), mainly with the N protein. The presence of antibodies specific to RBD corresponds with the data on the neutralizing activity of blood sera. According to the neutralization test in a number of cases, higher levels of antibodies that neutralize SARS-CoV-2 were detected in blood serum taken from patients several days before their death than in convalescents with a ranging disease severity. This high level of neutralizing antibodies specific to SARS-CoV-2 in the blood sera of patients who subsequently died in hospital from COVID-19 requires a thorough study of the role of humoral immunity as well as comorbidity and other factors affecting the humoral response in this disease.
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- 2021
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17. Author Correction: Data mining and model-predicting a global disease reservoir for low-pathogenic Avian Influenza (AI) in the wider Pacific Rim using big data sets
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Marina Gulyaeva, Falk Huettmann, Alexander Shestopalov, Masatoshi Okamatsu, Keita Matsuno, Duc‑Huy Chu, Yoshihiro Sakoda, Alexandra Glushchenko, Elaina Milton, and Eric Bortz
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Medicine ,Science - Abstract
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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- 2021
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18. Biological Properties and Genetic Characterization of Novel Low Pathogenic H7N3 Avian Influenza Viruses Isolated from Mallard Ducks in the Caspian Region, Dagestan, Russia
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Marina Gulyaeva, Maria Alessandra De Marco, Ganna Kovalenko, Eric Bortz, Tatiana Murashkina, Kseniya Yurchenko, Marzia Facchini, Mauro Delogu, Ivan Sobolev, Alimurad Gadzhiev, Kirill Sharshov, and Alexander Shestopalov
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avian influenza virus ,H7N3 ,Caspian region ,wild waterfowl ,Biology (General) ,QH301-705.5 - Abstract
Avian influenza viruses (AIVs) are maintained in wild bird reservoirs, particularly in mallard ducks and other waterfowl. Novel evolutionary lineages of AIV that arise through genetic drift or reassortment can spread with wild bird migrations to new regions, infect a wide variety of resident bird species, and spillover to domestic poultry. The vast continental reservoir of AIVs in Eurasia harbors a wide diversity of influenza subtypes, including both highly pathogenic (HP) and low pathogenic (LP) H7 AIV. The Caspian Sea region is positioned at the intersection of major migratory flyways connecting Central Asia, Europe, the Black and Mediterranean Sea regions and Africa and holds a rich wetland and avian ecology. To understand genetic reservoirs present in the Caspian Sea region, we collected 559 cloacal swabs from Anseriformes and other species during the annual autumn migration periods in 2017 and 2018. We isolated two novel H7N3 LPAIV from mallard ducks whose H7 hemagglutinin (HA) gene was phylogenetically related to contemporaneous strains from distant Mongolia, and more closely Georgia and Ukraine, and predated the spread of this H7 LPAIV sublineage into East Asia in 2019. The N3 neuraminidase gene and internal genes were prototypical of AIV widely dispersed in wild bird reservoirs sampled along flyways connected to the Caspian region. The polymerase and nucleoprotein segments clustered with contemporaneous H5 HPAI (clade 2.3.4.4b) isolates, suggesting the wide dispersal of H7 LPAIV and the potential of this subtype for reassortment. These findings highlight the need for deeper surveillance of AIV in wild birds to better understand the extent of infection spread and evolution along spatial and temporal flyways in Eurasia.
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- 2021
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19. Phylogeographic evidence for the inter- and intracontinental dissemination of avian influenza viruses via migration flyways.
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Junki Mine, Yuko Uchida, Kirill Sharshov, Ivan Sobolev, Alexander Shestopalov, and Takehiko Saito
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Medicine ,Science - Abstract
Genetically related highly pathogenic avian influenza viruses (HPAIVs) of H5N6 subtype caused outbreaks simultaneously in East Asia and Europe-geographically distinct regions-during winter 2017-2018. This situation prompted us to consider whether the application of phylogeographic analysis to a particular gene segment of AIVs could provide clues for understanding how AIV had been disseminated across the continent. Here, the N6 NA genes of influenza viruses isolated across the world were subjected to phylogeographic analysis to illustrate the inter- and intracontinental dissemination of AIVs. Those isolated in East Asia during winter and in Mongolia/Siberia during summer were comingled within particular clades of the phylogeographic tree. For AIVs in one clade, their dissemination in eastern Eurasia extended from Yakutia, Russia, in the north to East Asia in the south. AIVs in western Asia, Europe, and Mongolia were also comingled within other clades, indicating that Mongolia/Siberia plays an important role in the dissemination of AIVs across the Eurasian continent. Mongolia/Siberia may therefore have played a role in the simultaneous outbreaks of H5N6 HPAIVs in Europe and East Asia during the winter of 2017-2018. In addition to the long-distance intracontinental disseminations described above, intercontinental disseminations of AIVs between Eurasia and Africa and between Eurasia and North America were also observed. Integrating these results and known migration flyways suggested that the migration of wild birds and the overlap of flyways, such as that observed in Mongolia/Siberia and along the Alaskan Peninsula, contributed to the long-distance intra- and intercontinental dissemination of AIVs. These findings highlight the importance of understanding the movement of migratory birds and the dynamics of AIVs in breeding areas-especially where several migration flyways overlap-in forecasting outbreaks caused by HPAIVs.
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- 2019
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20. Experimental Infection Using Mouse-Adapted Influenza B Virus in a Mouse Model
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Elena Prokopyeva, Olga Kurskaya, Ivan Sobolev, Mariia Solomatina, Tatyana Murashkina, Anastasia Suvorova, Alexander Alekseev, Daria Danilenko, Andrey Komissarov, Artem Fadeev, Edward Ramsay, Alexander Shestopalov, Alexander Dygai, and Kirill Sharshov
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influenza B virus ,mouse-adapted ,amino acid substitutions ,pathogenicity ,influenza model ,virulence ,Microbiology ,QR1-502 - Abstract
Every year, influenza B viruses (IBVs) contribute to annual illness, and infection can lead to serious respiratory disease among humans. More attention is needed in several areas, such as increasing virulence or pathogenicity of circulating B viruses and developing vaccines against current influenza. Since preclinical trials of anti-influenza drugs are mainly conducted in mice, we developed an appropriate infection model, using an antigenically-relevant IBV strain, for furtherance of anti-influenza drug testing and influenza vaccine protective efficacy analysis. A Victoria lineage (clade 1A) IBV was serially passaged 17 times in BALB/c mice, and adaptive amino acid substitutions were found in hemagglutinin (HA) (T214I) and neuraminidase (NA) (D432N). By electron microscopy, spherical and elliptical IBV forms were noted. Light microscopy showed that mouse-adapted IBVs caused influenza pneumonia on day 6 post inoculation. We evaluated the illness pathogenicity, viral load, and histopathological features of mouse-adapted IBVs and estimated anti-influenza drugs and vaccine efficiency in vitro and in vivo. Assessment of an investigational anti-influenza drug (oseltamivir ethoxysuccinate) and an influenza vaccine (Ultrix®, SPBNIIVS, Saint Petersburg, Russia) showed effectiveness against the mouse-adapted influenza B virus.
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- 2020
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21. Viral etiology of acute respiratory infections in hospitalized children in Novosibirsk City, Russia (2013 - 2017).
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Olga Kurskaya, Tatyana Ryabichenko, Natalya Leonova, Weifeng Shi, Hongtao Bi, Kirill Sharshov, Eugenia Kazachkova, Ivan Sobolev, Elena Prokopyeva, Tatiana Kartseva, Alexander Alekseev, and Alexander Shestopalov
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Medicine ,Science - Abstract
BACKGROUND:Acute respiratory infections (ARIs) cause a considerable morbidity and mortality worldwide especially in children. However, there are few studies of the etiological structure of ARIs in Russia. In this work, we analyzed the etiology of ARIs in children (0-15 years old) admitted to Novosibirsk Children's Municipal Clinical Hospital in 2013-2017. METHODS:We tested nasal and throat swabs of 1560 children with upper or lower respiratory infection for main respiratory viruses (influenza viruses A and B, parainfluenza virus types 1-4, respiratory syncytial virus, metapneumovirus, four human coronaviruses, rhinovirus, adenovirus and bocavirus) using a RT-PCR Kit. RESULTS:We detected 1128 (72.3%) samples were positive for at least one virus. The most frequently detected pathogens were respiratory syncytial virus (358/1560, 23.0%), influenza virus (344/1560, 22.1%), and rhinovirus (235/1560, 15.1%). Viral co-infections were found in 163 out of the 1128 (14.5%) positive samples. We detected significant decrease of the respiratory syncytial virus-infection incidence in children with increasing age, while the reverse relationship was observed for influenza viruses. CONCLUSIONS:We evaluated the distribution of respiratory viruses in children with ARIs and showed the prevalence of respiratory syncytial virus and influenza virus in the etiological structure of infections. This study is important for the improvement and optimization of diagnostic tactics, control and prevention of the respiratory viral infections.
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- 2018
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22. Gluteal artery injuries including pseudoaneurysm associated with powered bone marrow biopsies
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Aditi P. Singh, Gopichand Pendurti, Shashi Singh, Alexander Shestopalov, Thomas Pacello, and Louis J. Reed
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Bone marrow biopsy, Gluteal artery injuries, Pseudoaneurysm ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
The bone marrow procedure (BMP) is a frequently performed procedure, with over 700,000 recorded in the U.S. annually. It is a fundamental component in the evaluation and management of both malignant and benign hematologic conditions. Adult patients are generally assured that the BMP is a safe procedure with minimal risk, albeit briefly painful. Traditionally performed using a manual Jamshidi needle, the procedure is increasingly being performed using powered bone marrow kits, which have shown consistently good results. In the current review we describe three cases of gluteal artery injuries following the powered driver procedure, one of which resulted in the formation of a pseudoaneurysm requiring radiology-guided intervention. We highlight the need for both hematologists and patients to be aware of this potentially life threatening complication as well as how to recognize it clinically and institute timely diagnostic and therapeutic measures.
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- 2017
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23. The Emergence of Avian Orthoavulavirus 13 in Wild Migratory Waterfowl in China Revealed the Existence of Diversified Trailer Region Sequences and HN Gene Lengths within this Serotype
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Yidong Fei, Xinxin Liu, Jiaqi Mu, Junjiao Li, Xibing Yu, Jin Chang, Yuhai Bi, Tobias Stoeger, Abdul Wajid, Denys Muzyka, Kirill Sharshov, Alexander Shestopalov, Alongkorn Amonsin, Jianjun Chen, Zhuang Ding, and Renfu Yin
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avian orthoavulavirus 13 ,migratory waterfowl ,HN gene ,trailer ,genetic relationships ,Microbiology ,QR1-502 - Abstract
Avian orthoavulavirus 13 (AOAV-13), also named avian paramyxovirus 13 (APMV-13), has been found sporadically in wild birds around the world ever since the discovery of AOAV-13 (AOAV-13/wild goose/Shimane/67/2000) in a wild goose from Japan in 2000. However, there are no reports of AOAV-13 in China. In the present study, a novel AOAV-13 virus (AOAV-13/wild goose/China/Hubei/V93-1/2015), isolated from a wild migratory waterfowl in a wetland of Hubei province of China, during active surveillance from 2013 to 2018, was biologically and genetically characterized. Phylogenetic analyses demonstrated a very close genetic relationship among all AOAV-13 strains, as revealed by very few genetic variations. Moreover, pathogenicity tests indicated that the V93-1 strain is a low virulent virus for chickens. However, the genome of the V93-1 virus was found to be 16,158 nucleotides (nt) in length, which is 12 nt or 162 nt longer than the other AOAV-13 strains that have been reported to date. The length difference of 12 nt in strain V93-1 is due to the existence of three repeats of the conserved sequence, “AAAAAT”, in the 5′-end trailer of the genome. Moreover, the HN gene of the V93-1 virus is 2070 nt in size, encoding 610 aa, which is the same size as the AOAV-13 strain from Japan, whereas that of two strains from Ukraine and Kazakhstan are 2080 nt in length, encoding 579 aa. We describe a novel AOAV-13 in migratory waterfowl in China, which suggests that diversified trailer region sequences and HN gene lengths exist within serotype AOAV-13, and highlight the need for its constant surveillance in poultry from live animal markets, and especially migratory birds.
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- 2019
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24. Novel Reassortant Clade 2.3.4.4 Avian Influenza A(H5N8) Virus in Wild Aquatic Birds, Russia, 2016
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Dong-Hun Lee, Kirill Sharshov, David E. Swayne, Olga Kurskaya, Ivan Sobolev, Marsel Kabilov, Alexander Alekseev, Victor Irza, and Alexander Shestopalov
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Highly pathogenic avian influenza virus ,HPAI ,reassortment ,Russia ,Siberia ,wild aquatic birds ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
The emergence of novel avian influenza viruses in migratory birds is of concern because of the potential for virus dissemination during fall migration. We report the identification of novel highly pathogenic avian influenza viruses of subtype H5N8, clade 2.3.4.4, and their reassortment with other avian influenza viruses in waterfowl and shorebirds of Siberia.
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- 2017
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25. H5N1 Influenza Virus, Domestic Birds, Western Siberia, Russia
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Alexander Shestopalov, Alexander G. Durimanov, Vasily A. Evseenko, Vladimir A. Ternovoi, Yury. N. Rassadkin, Yulya V. Razumova, Anna V. Zaykovskaya, Sergey I. Zolotykh, and Sergey V. Netesov
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Avian influenza ,H5N1 ,influenza ,domestic birds ,Siberia ,letter ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Published
- 2006
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26. Virological evaluation of avian influenza virus persistence in natural and anthropic ecosystems of Western Siberia (Novosibirsk Region, summer 2012).
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Maria A De Marco, Mauro Delogu, Mariya Sivay, Kirill Sharshov, Alexander Yurlov, Claudia Cotti, and Alexander Shestopalov
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Medicine ,Science - Abstract
BACKGROUND:Wild aquatic birds, reservoir of low-pathogenicity (LP) avian influenza viruses (AIVs), congregate in huge numbers in Western Siberia wetlands, where major intra- and inter-continental bird flyways overlap. In 2005 and 2006, highly pathogenic (HP) AIV H5N1 epizootics affected wild and domestic birds in the Novosibirsk Region. In 2012, we evaluated AIV persistence in Siberian natural and anthropic ecosystems. METHODOLOGY/PRINCIPAL FINDINGS:In Novosibirsk Region, 166 wild birds ecologically linked to aquatic environments and 152 domestic waterfowl were examined for AIV isolation in embryonating chicken eggs. Biological samples were obtained by integrating the conventional cloacal swab collection with the harvesting of samples from birds' plumage. Haemagglutinating allantoic fluids were further characterized by serological and molecular methods. In August-September 2012, 17 AIVs, including three H3N8, eight H4N6, two H4N?, one H2N?, one H?N2, and two unsubtyped LPAIVs, were isolated from 15 wild ducks. Whereas comparable proportions of wild Anseriformes (n.118) tested virus isolation (VI)-positive from cloaca and feathers (5.9% vs 8.5%) were detected, the overall prevalence of virus isolation, obtained from both sampling methods, was 2.4 times higher than that calculated on results from cloacal swab examination only (14.4% vs 5.9%). Unlike previously described in this area, the H4N6 antigenic subtype was found to be the prevalent one in 2012. Both cloacal and feather samples collected from domestic waterfowl tested VI-negative. CONCLUSION/SIGNIFICANCE:We found lack of evidence for the H5N1 HPAIV circulation, explainable by the poor environmental fitness of HPAIVs in natural ecosystems. Our LPAIV isolation data emphasise the importance of Siberia wetlands in influenza A virus ecology, providing evidence of changes in circulation dynamics of HN antigenic subtypes harboured in wild bird reservoirs. Further studies of isolates, based on bioinformatic approaches to virus molecular evolution and phylogenesis, will be needed to better elucidate mechanisms involved in AIV perpetuation in this area.
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- 2014
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27. Monitoring of Potentially Emerging Pathogens in Wild Birds at Baikal Lake Basin in 2019
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Marina Gulyaeva, Evgeniya Badmaeva, Kseniya Yurchenko, Kirill Sharshov, Ivan Sobolev, Yuhai Bi, Jianjun Chen, Weifeng Shi, Iliya Diulin, Tsydypzhap Dorzhiev, and Alexander Shestopalov
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Ecology ,Health, Toxicology and Mutagenesis - Published
- 2022
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28. Age-Specific Etiology of Severe Acute Respiratory Infections and Influenza Vaccine Effectivity in Prevention of Hospitalization in Russia, 2018–2019 Season
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Olga Afanasieva, Maria Pisareva, Tamila Musaeva, Elizaveta Smorodintseva, Ekaterina Golovacheva, Daria Danilenko, Elena Obraztsova, Elena Dondurey, Dmitry Lioznov, Alexander Shestopalov, Anna Sominina, Andrey Komissarov, Mikhail I. Bakaev, Veronica Timonina, Svetlana Sergeyevna Smirnova, Kirill Stolyarov, Olga Kurskaya, Elena Rozhkova, Dmitry Guzhov, and Alexander V. Alimov
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Adult ,medicine.medical_specialty ,Influenza vaccine ,viruses ,Population ,Vaccine Efficacy ,medicine.disease_cause ,Virus ,Antigenic drift ,Influenza A Virus, H1N1 Subtype ,Internal medicine ,Intensive care ,Influenza, Human ,medicine ,Humans ,Metapneumovirus ,Antigenic Drift and Shift ,Child ,education ,Respiratory Tract Infections ,Vaccine effectiveness ,Respiratory viruses ,education.field_of_study ,business.industry ,Influenza A Virus, H3N2 Subtype ,Age Factors ,Infant ,virus diseases ,Influenza ,Hospitalization ,Influenza Vaccines ,Child, Preschool ,Etiology ,Seasons ,Rhinovirus ,business ,Research Article - Abstract
The expansion and standardization of clinical trials, as well as the use of sensitive and specific molecular diagnostics methods, provide new information on the age-specific roles of influenza and other respiratory viruses in development of severe acute respiratory infections (SARI). Here, we present the results of the multicenter hospital-based study aimed to detect age-specific impact of influenza and other respiratory viruses (ORV). The 2018–2019 influenza season in Russia was characterized by co-circulation of influenza A(H1N1)pdm09 and A(H3N2) virus subtypes which were detected among hospitalized patients with SARI in 19.3% and 16.4%, respectively. RSV dominated among ORV (15.1% of total cases and 26.8% in infants aged ≤ 2 years). The most significant SARI agents in intensive care units were RSV and influenza A(H1N1)pdm09 virus, (37.3% and 25.4%, respectively, of PCR-positive cases). Hyperthermia was the most frequently registered symptom for influenza cases. In contrast, hypoxia, decreased blood O2 concentration, and dyspnea were registered more often in RSV, rhinovirus, and metapneumovirus infection in young children. Influenza vaccine effectiveness (IVE) against hospitalization of patients with PCR-confirmed influenza was evaluated using test-negative case–control design. IVE for children and adults was estimated to be 57.0% and 62.0%, respectively. Subtype specific IVE was higher against influenza A(H1N1)pdm09, compared to influenza A(H3N2) (60.3% and 45.8%, respectively). This correlates with delayed antigenic drift of the influenza A(H1N1)pdm09 virus and genetic heterogeneity of the influenza A(H3N2) population. These studies demonstrate the need to improve seasonal influenza prevention and control in all countries as states by the WHO Global Influenza Strategy for 2019–2030 initiative.
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- 2021
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29. Ecology of avian influenza viruses in migratory birds wintering within the Yangtze River wetlands
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Guoxiang Yang, Bilin Liang, Mingxin Li, Marina A. Gulyaeva, Jing Chen, Yong Li, Haizhou Liu, Guang Chen, Alexander Shestopalov, Jianjun Chen, Mengchan Hao, Yuhai Bi, Decheng Wang, Di Liu, Weifeng Shi, Yi Yan, Hanzhong Wang, Jun Zhang, Juefu Hu, and Chaochao Xiong
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geography ,Multidisciplinary ,geography.geographical_feature_category ,Phylogenetic tree ,Ecology ,animal diseases ,Ecology (disciplines) ,Reassortment ,virus diseases ,Wetland ,Biology ,010502 geochemistry & geophysics ,medicine.disease_cause ,01 natural sciences ,Low pathogenic ,Influenza A virus subtype H5N1 ,Gene flow ,Yangtze river ,medicine ,0105 earth and related environmental sciences - Abstract
Migratory birds are considered natural reservoirs of avian influenza A viruses (AIVs). To further our viral ecology knowledge and understand the subsequent risk posed by wild birds, we conducted a 4-year surveillance study of AIVs in the bird wintering wetlands of the Yangtze River, China. We collected over 8000 samples and isolated 122 AIV strains. Analyses were then carried out with 108 novel sequenced genomes and data were deposited in GISAID and other public databases. The results showed that the Yangtze River wintering wetlands functioned as a mixing ground, where various subtypes of AIVs were detected harboring a high diversity of nucleotide sequences; moreover, a portion of AIV gene segments were persistent inter-seasonally. Phylogenetic incongruence presented complex reassortment events and distinct patterns among various subtypes. In addition, we observed that viral gene segments in wintering wetlands were closely related to known North American isolates, indicating that intercontinental gene flow occurred. Notably, highly pathogenic H5 and low pathogenic H9 viruses, which usually circulate in poultry, were found to have crossed the poultry/wild bird interface, with the viruses introduced to wintering birds. Overall, this study represented the largest AIV surveillance effort of wild birds within the Yangtze River wintering wetlands. Surveillance data highlighted the important role of wintering wild birds in the ecology of AIVs and may enable future early warnings of novel AIV emergence.
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- 2021
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30. Highly Pathogenic Avian Influenza A(H5N8) Virus Clade 2.3.4.4b, Western Siberia, Russia, 2020
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Artem Fadeev, Kirill Sharshov, Nikita Dubovitskiy, Junki Mine, Victor Irza, Andrey Komissarov, Olga Kurskaya, Alexander Alekseev, Yuko Uchida, Ivan Sobolev, Takehiko Saito, Sergey Leonov, Ryota Tsunekuni, Daria Danilenko, Alexander Shestopalov, and Yuriy Yushkov
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Microbiology (medical) ,LPAIV ,Epidemiology ,Highly pathogenic ,Reassortment ,Animals, Wild ,Infectious and parasitic diseases ,RC109-216 ,avian influenza virus ,Biology ,medicine.disease_cause ,Virus ,Russia ,Disease Outbreaks ,Birds ,respiratory infections ,H5N8 ,medicine ,Research Letter ,Animals ,viruses ,Influenza A Virus, H5N8 Subtype ,Clade ,Western siberia ,Phylogeny ,Avian influenza virus ,clade 2.3.4.4b ,Western Siberia ,virus diseases ,Pathogenicity ,Virology ,Influenza A virus subtype H5N1 ,zoonoses ,Siberia ,Highly Pathogenic Avian Influenza A(H5N8) Virus Clade 2.3.4.4b, Western Siberia, Russia, 2020 ,Infectious Diseases ,Influenza in Birds ,HPAIV ,Medicine ,reassortment ,influenza ,Reassortant Viruses - Abstract
Two variants of highly pathogenic avian influenza A(H5N8) virus were detected in dead poultry in Western Siberia, Russia, during August and September 2020. One variant was represented by viruses of clade 2.3.4.4b and the other by a novel reassortant between clade 2.3.4.4b and Eurasian low pathogenicity avian influenza viruses circulating in wild birds.
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- 2021
31. Biodiversity and epidemic potential of Chiropteran coronaviruses (Nidovirales: Coronaviridae)
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Yulia V. Kononova, Marina A. Gulyaeva, Alexander Shestopalov, Marandi Mehdi Vasfi, Mikhail Yu Shchelkanov, Jalalutdin M. Jamalutdinov, Alexander Alekseev, and Alimurad A. Gadzhiev
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Deltacoronavirus ,Ecology ,biology ,viruses ,Geography, Planning and Development ,virus diseases ,Outbreak ,Context (language use) ,biology.organism_classification ,medicine.disease_cause ,medicine.disease ,Virology ,Alphacoronavirus ,Nidovirales ,medicine ,Middle East respiratory syndrome ,Coronaviridae ,Ecology, Evolution, Behavior and Systematics ,Coronavirus - Abstract
Aim . The aim of this review is a comprehensive analysis of current literature data on coronaviruses identified in bats. Discussion . Coronaviruses ( Coronaviridae ) constitute the most extensive family of viruses of the order Nidovirales. Coronaviruses have a wide range of hosts, including mammals ( Alphacoronavirus, Betacoronavirus, Deltacoronavirus, Gammacoronavirus ) and birds ( Deltacoronavirus, Gammacoronavirus ), amphibians ( Alphaletovirus ) and are pathogens of respiratory, intestinal, cardiovascular. Until the beginning of this century, only etiological agents of mild and moderate respiratory diseases were known among pathogenic coronaviruses for humans. In the 21st century, new highly pathogenic coronaviruses were discovered that caused outbreaks of severe pneumonia with high mortality: the severe acute respiratory syndrome coronavirus (Severe acute respiratory syndrome ‐ related coronavirus, SARS ‐ CoV; 2002 ‐ 2003, southern provinces of China), the Middle East respiratory coronavirus Syndrome (Middle East respiratory syndrome ‐ related coronavirus, MERS ‐ CoV; 2012, western part of Saudi Arabia) and type 2 acute respiratory syndrome coronavirus (Severe acute respiratory syndrome ‐ related coronavirus 2, SARS ‐ CoV ‐ 2; 2019 ‐ ..., the eastern part of central China). The natural reservoirs of SARS ‐ CoV, SARS ‐ CoV ‐ 2 and MERS ‐ CoV are bats ( Chiroptera ). Coronaviruses circulating in bat populations are not only phylogenetically close to the currently known especially dangerous human viruses but probably have epidemic potential that can be realized in the future. Conclusion . This review presents current data on coronaviruses of bats: taxonomic status, spectrum of potential hosts, distribution. The ecological features of coronaviruses of bats are considered in the context of their epidemiological significance. The origin of pathogenic human coronaviruses is discussed.
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- 2020
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32. Genetics of Japanese H5N8 high pathogenicity avian influenza viruses isolated in winter 2020-2021 and their genetic relationship with avian influenza viruses in Siberia
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Junki Mine, Ryota Tsunekuni, Taichiro Tanikawa, Yuko Uchida, Nikita Dubovitskiy, Anastasiya Derko, Ivan Sobolev, Alexander Shestopalov, Kirill Sharshov, and Takehiko Saito
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General Veterinary ,General Immunology and Microbiology ,Virulence ,Animals, Wild ,General Medicine ,Poultry ,Disease Outbreaks ,Birds ,Siberia ,Hemagglutinins ,Japan ,Influenza A virus ,Influenza in Birds ,Animals ,Influenza A Virus, H5N8 Subtype ,Influenza A Virus, H5N2 Subtype ,Phylogeny - Abstract
In winter 2020-2021, Japan experienced multiple serious outbreaks of H5N8 high pathogenicity avian influenza (HPAI)-52 outbreaks at poultry farms and 58 cases in wild birds or the environment-that occurred simultaneously with outbreaks in Europe. Here, we examined how the H5N8 HPAI viruses (HPAIVs) emerged and spread through Japan and across the Eurasian continent. Phylogenetic and phylogeographic analyses were performed using full genetic sequences of the viruses that caused 52 outbreaks at poultry farms or were isolated from 11 infected wild birds. Genetically, the viruses showed five genotypes (E1, E2, E3, E5 and E7) that have already been reported in Korea. The viruses showing the E3 genotype were found to have caused most of the HPAI outbreaks at poultry farms and were detected over the longest period of time. The internal genes of the viruses were genetically related to those of AIVs isolated through avian influenza surveillance activities in regions of Siberia including Buryatia, Yakutia and Amur regions, suggesting that the Japanese viruses emerged via reassortment events with AIVs genetically related to Siberian AIVs. In addition, H5N2 and H5N8 HPAIVs were isolated from wild birds during surveillance activities conducted in the Novosibirsk region of Siberia in summer 2020. Phylogenetic analyses revealed that these viruses possessed haemagglutinin genes that were related to those of H5N8 HPAIVs that were circulating in Europe in winter 2020-2021. These results suggest that the viruses in wild birds during summer in Siberia most likely spread in both Asia and Europe the following winter. Together, the present results emphasize the importance of continual monitoring of AIVs in Siberia for forecasting outbreaks not only in Asia but also further away in Europe.
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- 2022
33. Biological Properties and Genetic Characterization of Novel Low Pathogenic H7N3 Avian Influenza Viruses Isolated from Mallard Ducks in the Caspian Region, Dagestan, Russia
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Mauro Delogu, Ivan Sobolev, Maria Alessandra De Marco, Tatiana Murashkina, Marina A. Gulyaeva, Alexander Shestopalov, Alimurad A. Gadzhiev, Marzia Facchini, Kirill Sharshov, Ganna Kovalenko, Eric Bortz, Kseniya S. Yurchenko, and Marina Gulyaeva, Maria Alessandra De Marco, Ganna Kovalenko, Eric Bortz,Tatiana Murashkina, Kseniya Yurchenko, Marzia Facchini, Mauro Delogu, Ivan Sobolev, Alimurad Gadzhiev, Kirill Sharshov, Alexander Shestopalov
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Microbiology (medical) ,QH301-705.5 ,animal diseases ,Reassortment ,Zoology ,avian influenza virus ,wild waterfowl ,Biology ,medicine.disease_cause ,Microbiology ,03 medical and health sciences ,Mediterranean sea ,Genetic drift ,Virology ,medicine ,Waterfowl ,Biology (General) ,Clade ,030304 developmental biology ,Caspian region ,0303 health sciences ,030306 microbiology ,Communication ,virus diseases ,Anseriformes ,biology.organism_classification ,Influenza A virus subtype H5N1 ,H7N3 ,avian influenza viru ,Biological dispersal - Abstract
Avian influenza viruses (AIVs) are maintained in wild bird reservoirs, particularly in mallard ducks and other waterfowl. Novel evolutionary lineages of AIV that arise through genetic drift or reassortment can spread with wild bird migrations to new regions, infect a wide variety of resident bird species, and spillover to domestic poultry. The vast continental reservoir of AIVs in Eurasia harbors a wide diversity of influenza subtypes, including both highly pathogenic (HP) and low pathogenic (LP) H7 AIV. The Caspian Sea region is positioned at the intersection of major migratory flyways connecting Central Asia, Europe, the Black and Mediterranean Sea regions and Africa and holds a rich wetland and avian ecology. To understand genetic reservoirs present in the Caspian Sea region, we collected 559 cloacal swabs from Anseriformes and other species during the annual autumn migration periods in 2017 and 2018. We isolated two novel H7N3 LPAIV from mallard ducks whose H7 hemagglutinin (HA) gene was phylogenetically related to contemporaneous strains from distant Mongolia, and more closely Georgia and Ukraine, and predated the spread of this H7 LPAIV sublineage into East Asia in 2019. The N3 neuraminidase gene and internal genes were prototypical of AIV widely dispersed in wild bird reservoirs sampled along flyways connected to the Caspian region. The polymerase and nucleoprotein segments clustered with contemporaneous H5 HPAI (clade 2.3.4.4b) isolates, suggesting the wide dispersal of H7 LPAIV and the potential of this subtype for reassortment. These findings highlight the need for deeper surveillance of AIV in wild birds to better understand the extent of infection spread and evolution along spatial and temporal flyways in Eurasia.
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- 2021
34. First detection of a G1-like H9N2 virus in Russia, 2018
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Takehiko Saito, Junki Mine, Victor Irza, Alexander Alekseev, Alexander Shestopalov, Yuriy Yushkov, Yuko Uchida, Ivan Sobolev, Marsel R. Kabilov, Anastasiya Derko, Kirill Sharshov, Alikina Tatyana, Olga Kurskaya, and Sergey Leonov
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Genotype ,Biology ,Far East ,Virology ,Virus - Published
- 2019
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35. Isolation of a panel of ultra-potent human antibodies neutralizing SARS-CoV-2 and viral variants of concern
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Pavel P. Solodkov, Olga Y. Volkova, Alexander Yu. Alekseyev, Anton N. Chikaev, Alexander Shestopalov, G. M. Yusubalieva, Alexander V. Taranin, Yulia V. Kononova, Sergey Guselnikov, Chikaev Na, Marina A. Gulyaeva, Andrey A. Gorchakov, Konstantin O Baranov, Tatyana N. Belovezhets, Tatiana V. Klypa, Vladimir P. Baklaushev, Vladimir T. Valuev-Elliston, Alexander M. Najakshin, Alexander G. Markhaev, Sergey V. Kulemzin, Alexander V. Ivanov, Victor F. Larichev, and Ludmila V. Mechetina
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QH573-671 ,biology ,Isolation (health care) ,Coronavirus disease 2019 (COVID-19) ,medicine.drug_class ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Biological techniques ,Immunology ,Cell Biology ,Monoclonal antibody ,Biochemistry ,Virology ,In vitro ,Article ,Viral replication ,In vivo ,Genetics ,biology.protein ,medicine ,Antibody ,Cytology ,Molecular Biology - Abstract
In the absence of virus-targeting small-molecule drugs approved for the treatment and prevention of COVID-19, broadening the repertoire of potent SARS-CoV-2-neutralizing antibodies represents an important area of research in response to the ongoing pandemic. Systematic analysis of such antibodies and their combinations can be particularly instrumental for identification of candidates that may prove resistant to the emerging viral escape variants. Here, we isolated a panel of 23 RBD-specific human monoclonal antibodies from the B cells of convalescent patients. A surprisingly large proportion of such antibodies displayed potent virus-neutralizing activity both in vitro and in vivo. Four of the isolated nAbs can be categorized as ultrapotent with an apparent IC100 below 16 ng/mL. We show that individual nAbs as well as dual combinations thereof retain activity against currently circulating SARS-CoV-2 variants of concern (such as B.1.1.7, B.1.351, B.1.617, and C.37), as well as against other viral variants. When used as a prophylactics or therapeutics, these nAbs could potently suppress viral replication and prevent lung pathology in SARS-CoV-2-infected hamsters. Our data contribute to the rational development of oligoclonal therapeutic nAb cocktails mitigating the risk of SARS-CoV-2 escape.
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- 2021
36. Intratumoral Virotherapy with Wild-Type Newcastle Disease Virus in Carcinoma Krebs-2 Cancer Model
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Jianjun Chen, Yuhai Bi, Lyubov S Adamenko, Alexandra V. Glushchenko, Marina A. Gulyaeva, Weifeng Shi, Kseniya S. Yurchenko, and Alexander Shestopalov
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Male ,0301 basic medicine ,Oncolytic Newcastle Disease Virus ,viruses ,lcsh:QR1-502 ,Newcastle disease virus ,Antineoplastic Agents ,Pilot Projects ,tumor progression ,Injections, Intralesional ,Newcastle disease ,Article ,lcsh:Microbiology ,Virus ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Cell Line, Tumor ,Virology ,Carcinoma ,medicine ,carcinoma Krebs-2 ,Animals ,Virotherapy ,Oncolytic Virotherapy ,Mice, Inbred BALB C ,biology ,business.industry ,Endothelial Cells ,medicine.disease ,biology.organism_classification ,Oncolytic virus ,030104 developmental biology ,Infectious Diseases ,Tumor progression ,oncolytic viruses ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,virotherapy ,business - Abstract
The results of experimental and clinical trials of the agents based on oncolytic Newcastle disease virus (NDV) strains provided hope for the development of virotherapy as a promising method for treating human tumors. However, the mechanism of the antitumor effect of NDV and realization of its cytotoxic potential in a cancer cell remains to be elucidated. In the current work, we have studied the antitumor effect of NDV in a syngeneic model of mouse Krebs-2 carcinoma treated with intratumoral injections of a wild-type strain NDV/Altai/pigeon/770/2011. Virological methods were used for preparation of a virus-containing sample. Colorimetric MTS assay was used to assess the viability of Krebs-2 tumor cells infected with a viral strain in vitro. In vivo virotherapy was performed in eight-week-old male BALB/c mice treated with serial intratumoral injections of NDV in an experimental model of Krebs-2 solid carcinoma. Changes in the tumor nodes of Krebs-2 carcinoma after virotherapy were visualized by MRI and immunohistological staining. Light microscopy examination, immunohistochemical and morphometric analyses have shown that intratumoral viral injections contribute to the inhibition of tumor growth, appearance of necrosis-like changes in the tumor tissue and the antiangiogenic effect of the virus. It has been established that a course of intratumoral virotherapy with NDV/Altai/pigeon/770/2011 strain in a mouse Krebs-2 carcinoma resulted in increased destructive changes in the tumor tissue, in the volume density of necrotic foci and numerical density of endothelial cells expressing CD34 and VEGFR. These results indicate that intratumoral NDV injection reduces tumor progression of an aggressive tumor.
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- 2021
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37. Data mining and model-predicting a global disease reservoir for low-pathogenic Avian Influenza (A) in the wider pacific rim using big data sets
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Falk Huettmann, Masatoshi Okamatsu, Alexandra V. Glushchenko, Alexander Shestopalov, Eric Bortz, Yoshihiro Sakoda, Elaina Milton, Marina A. Gulyaeva, Duc-Huy Chu, and Keita Matsuno
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0301 basic medicine ,Disease reservoir ,040301 veterinary sciences ,Mathematics and computing ,animal diseases ,Wildlife ,lcsh:Medicine ,Diseases ,medicine.disease_cause ,Microbiology ,Article ,0403 veterinary science ,03 medical and health sciences ,Medical research ,Pandemic ,medicine ,lcsh:Science ,Ecological niche ,Multidisciplinary ,Ecology ,Pacific Rim ,lcsh:R ,Biological techniques ,Natural hazards ,Health care ,Outbreak ,virus diseases ,04 agricultural and veterinary sciences ,Biogeochemistry ,Influenza research ,Influenza A virus subtype H5N1 ,Computational biology and bioinformatics ,Environmental sciences ,Environmental social sciences ,030104 developmental biology ,Geography ,Risk factors ,lcsh:Q ,Zoology ,Climate sciences ,Biotechnology - Abstract
Avian Influenza (AI) is a complex but still poorly understood disease; specifically when it comes to reservoirs, co-infections, connectedness and wider landscape perspectives. Low pathogenic (Low-path LP) AI in chickens caused by less virulent strains of AI viruses (AIVs)—when compared with highly pathogenic AIVs (HPAIVs)—are not even well-described yet or known how they contribute to wider AI and immune system issues. Co-circulation of LPAIVs with HPAIVs suggests their interactions in their ecological aspects. Here we show for the Pacific Rim an international approach how to data mine and model-predict LP AI and its ecological niche with machine learning and open access data sets and geographic information systems (GIS) on a 5 km pixel size for best-possible inference. This is based on the best-available data on the issue (~ 40,827 records of lab-analyzed field data from Japan, Russia, Vietnam, Mongolia, Alaska and Influenza Research Database (IRD) and U.S. Department of Agriculture (USDA) database sets, as well as 19 GIS data layers). We sampled 157 hosts and 110 low-path AIVs with 32 species as drivers. The prevalence across low-path AIV subtypes is dominated by Muscovy ducks, Mallards, Whistling Swans and gulls also emphasizing industrial impacts for the human-dominated wildlife contact zone. This investigation sets a good precedent for the study of reservoirs, big data mining, predictions and subsequent outbreaks of HPAI and other pandemics.
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- 2020
38. Monitoring of Potentially Emerging Pathogens in Wild Birds at Baikal Lake Basin in 2019
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Marina, Gulyaeva, Evgeniya, Badmaeva, Kseniya, Yurchenko, Kirill, Sharshov, Ivan, Sobolev, Yuhai, Bi, Jianjun, Chen, Weifeng, Shi, Iliya, Diulin, Tsydypzhap, Dorzhiev, and Alexander, Shestopalov
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Birds ,Lakes ,Animals ,Animals, Wild ,Water Pollutants, Chemical - Published
- 2020
39. Experimental Infection of Adapted Influenza B Virus in Mice Model
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Fadeev A, Danilenko D, Kirill Sharshov, Prokopyeva E, T. A. Murashkina, Ivan Sobolev, Kommissarov A, Alexander Shestopalov, A. Alekseev, Dygai A, M. V. Solomatina, Kurskaya O, and Suvorova A
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Animal model ,Virulence ,virus diseases ,Biology ,Pathogenicity ,Virology ,Virus ,virology - Abstract
Over the years influenza B virus (IBV) contribute annual disease and can lead to serious respiratory disease among humans. More attention should be paid to the mammalian adaptive processes of B viruses and development of vaccines against current influenza. Because of preclinical trials of anti-influenza drugs are conducted mainly on mice, we developed adequate animal model using antigenically-relevant IBV strain for testing anti-influenza drugs and protective efficacy of flu vaccines. We serially passaged Victoria lineage (clade 1A) IBV 17 times in BALB/c mice. The adaptive amino acid substitutions were found in HA (T214I) and NA (D432N). By the electron microscopic examination, we showed spherical and elliptical shapes of IBV. Light microscopy showed that mouse-adapted B virus caused influenza pneumonia on day 6 post inoculation. We evaluated the illness pathogenicity, viral load and histopathological features of mouse-adapted IBV and estimated anti-influenza drugs and vaccine efficiency in vitro and in vivo. Assessment of investigational anti-influenza drug oseltamivir ethoxisuccinate and flu vaccine Ultrix® revealed effectivity against our mouse-adapted influenza B virus.
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- 2020
40. Characterization of Avian-like Influenza A (H4N6) Virus Isolated from Caspian Seal in 2012
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Lidia V. Shestopalova, A. V. Kovner, Alexander Alekseev, Olga Kurskaya, Ivan Sobolev, Michael Shchelkanov, Marina A. Gulyaeva, Yuhai Bi, Kirill Sharshov, Weifeng Shi, and Alexander Shestopalov
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Male ,0301 basic medicine ,Letter ,animal diseases ,030106 microbiology ,Immunology ,Zoology ,Phoca ,medicine.disease_cause ,Seal (mechanical) ,Virus ,Russia ,Birds ,Mice ,03 medical and health sciences ,Orthomyxoviridae Infections ,Phylogenetics ,Nasopharynx ,Virology ,parasitic diseases ,medicine ,Animals ,Natural reservoir ,Phylogeny ,Disease Reservoirs ,Mice, Inbred BALB C ,biology ,Host (biology) ,fungi ,virus diseases ,Influenza a ,biology.organism_classification ,Influenza A virus subtype H5N1 ,030104 developmental biology ,Influenza A virus ,Influenza in Birds ,Molecular Medicine ,Harbor seal ,Female - Abstract
Marine mammals are widely distributed and can be found almost in all coastal waters and coastlines around the world. The interface areas between marine and terrestrial environments provide natural habitats for aquatic and semiaquatic mammals as well as for reservoir species of avian influenza viruses (AIV) (Runstadler et al. 2013). Previous studies showed that wild aquatic birds, the natural reservoir of AIV, are able to transmit the virus to various mammals, including seals, swine, horses, muskrats, and humans (Webster et al. 1992; Reperant et al. 2009; Gulyaeva et al. 2017). Close contacts between sea mammals and wild birds on breeding-grounds could promote both interspecies transmission of AIV and virus establishment in a new host (Fereidouni et al. 2014). Various AIV subtypes (A/seal/ Massachusetts/80(H7N7), A/Seal/MA/133/82(H4N5), A/Seal/MA/3807/91(H4N6), A/Seal/MA/3911/92(H3N3), A/harbour seal/Mass/1/2011(H3N8) and A/harbor seal/NL/ PV14-221_ThS/2015(H10N7) etc.) have been isolated from different species of marine mammals during the last 30 years. AIV isolated from marine mammals and wild birds are closely related, which suggests that wild birds are the major source of AIV infection (Fereidouni et al. 2014; Bodewes et al. 2015). In addition, AIV can cross species barrier and replicate well in experimental mammals without prior adaptation (Driskell et al. 2012).
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- 2018
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41. Study of Antiviral Efficiency of Oxidized Dextrans In Vitro and In Vivo
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Olga Kurskaya, Alexander Shestopalov, L. P. Romakh, Kirill Sharshov, A. V. Troitskii, V. A. Shkurupy, T. N. Bystrova, T. A. Murashkina, A. Yu. Alekseev, and Anastasiya Derko
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Male ,0301 basic medicine ,medicine.medical_treatment ,Pharmacology ,Antiviral Agents ,General Biochemistry, Genetics and Molecular Biology ,Virus ,Madin Darby Canine Kidney Cells ,Mice ,03 medical and health sciences ,Dogs ,Influenza A Virus, H1N1 Subtype ,Orthomyxoviridae Infections ,In vivo ,medicine ,Animals ,Saline ,Cytopathic effect ,Mice, Inbred BALB C ,Molecular mass ,Chemistry ,Dextrans ,Influenza a ,General Medicine ,In vitro ,030104 developmental biology ,Female ,Nasal administration ,Oxidation-Reduction - Abstract
Antiviral efficiency of oxidized dextrans (OD) with different molecular weights and oxidation degree (OD40min, OD70min, OD40max, and OD70 max) was studied in vitro and in vivo. Dextrans OD40max and OD70max prevented the development of the cytopathic effect of influenza A(H1N1)pdm09 virus in more than 50% MDCK cells vs. control (no OD). Four intranasal doses of OD40min, OD40max, and OD70min and one intranasal dose of OD70max before infection of BALB/c mice with A(H1N1)pdm09 influenza virus significantly reduced mortality and prolonged life span in comparison with controls receiving saline. These and our previous data attest to clear-cut preventive effect of OD in influenza infection.
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- 2018
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42. ORTHOMYXO- AND PARAMYXOVIRUSES IN MARINE MAMMALS
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Gayirbeg M. Abdurakhmanov, Madina G. Daudova, Kirill Sharshov, Madina Z. Magomedova, Alexander Shestopalov, Marina Gulyaeva, Alimurad A. Gadzhiev, and Alexander Alekseev
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morbillivirus ,Ecology ,viral infections ,Geography, Planning and Development ,Biology ,marine mammals ,influenza virus ,QH540-549.5 ,Ecology, Evolution, Behavior and Systematics ,seals - Abstract
Aim. Marine mammals play the role of "sentries", standing guard over the health and functioning of marine ecosystems. The analysis of data reported in literature was carried out to understand and to evaluate a circulation of representatives of the Orthomyxoviridae and Paramyxoviridae, dangerous pathogens capable to cause morbidity and mortality in marine warm-blooded animals. Discussion. In the population of marine animals, in the available literature, no more than twenty infectious diseases were described. At the same time, according to preliminary estimates, about 15% of marine mammals die from indicated diseases. Previous studies conducted by various groups of scientists have already shown the circulation of various viral pathogens, which cause different infections in these animals. The present fact indicates the important role of marine mammals in the ecology and spreading of a number of viruses. In accordance with a literature data, representatives of Orthomixoviruses and Paramyxoviruses are among the most dangerous pathogens, which may infect this type of animals. Thus, it was suggested that seals may be infected with a wide range of influenza viruses without prior adaptation. It was emphasized that pinnipeds are one of the reservoir of a human influenza B virus in nature. Infections caused by morbilliviruses, can be the reason of epizootics in a population of seals and among the other species of marine mammals. Signs of a disease are similar to the clinic of carnivore plague. Main conclusions. The data presented in literature is extremely not enough for fully understanding a role of marine mammals as hosts or carriers of potential zoonotic pathogens, such as avian influenza virus (AIV), morbilliviruses and others. Thus, this issue requires further more detailed study.
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- 2018
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43. CASCIRE surveillance network and work on avian influenza viruses
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Zhaohui Pan, Xiangdong Li, Shenghu He, Yongchun Yang, Gary Wong, Renfu Yin, Hong Li, Qianfeng Xia, Weifeng Shi, Ying Luo, Quanjiao Chen, Laixing Li, Zhenghai Ma, Guanghua Fu, Haixia Xiao, Alexander Shestopalov, Xuebing Li, Yi Shi, Wen-xia Tian, Lixin Wang, Hui Zeng, Chuansong Quan, William J. Liu, Jinghua Yan, Yingxia Liu, Fumin Lei, Wenjun Liu, Kirill Sharshov, Lianpan Dai, Wen Xu, Qianli Wang, Jianjun Chen, Yuhai Bi, and George F. Gao
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0301 basic medicine ,030106 microbiology ,MEDLINE ,Computational biology ,Biological evolution ,medicine.disease_cause ,General Biochemistry, Genetics and Molecular Biology ,Influenza A virus subtype H5N1 ,03 medical and health sciences ,030104 developmental biology ,Geography ,Work (electrical) ,medicine ,General Agricultural and Biological Sciences ,General Environmental Science - Published
- 2017
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44. Five distinct reassortants of H5N6 highly pathogenic avian influenza A viruses affected Japan during the winter of 2016-2017
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Tsuyoshi Yamaguchi, Hiroshi Ito, Ryota Tsunekuni, Kosuke Soda, Tatsufumi Usui, Yuko Uchida, Ivan Sobolev, Taichiro Tanikawa, Nobuhiro Takemae, Kirill Sharshov, Takehiko Saito, Junki Mine, Alexander Shestopalov, and Toshihiro Ito
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0301 basic medicine ,Wild bird ,Highly pathogenic ,animal diseases ,Biology ,medicine.disease_cause ,Genome ,Virus ,Poultry ,03 medical and health sciences ,Japan ,Virology ,Genotype ,medicine ,Animals ,Clade ,Gene ,Phylogeny ,Genetics ,Clade 2.3.4.4 ,Phylogenetic tree ,Genetic Variation ,virus diseases ,H5N6 ,Influenza A virus subtype H5N1 ,Highly pathogenic avian influenza A viruses ,030104 developmental biology ,Influenza A virus ,Influenza in Birds ,Chickens ,Reassortant Viruses - Abstract
To elucidate the evolutionary pathway, we sequenced the entire genomes of 89 H5N6 highly pathogenic avian influenza viruses (HPAIVs) isolated in Japan during winter 2016–2017 and 117 AIV/HPAIVs isolated in Japan and Russia. Phylogenetic analysis showed that at least 5 distinct genotypes of H5N6 HPAIVs affected poultry and wild birds during that period. Japanese H5N6 isolates shared a common genetic ancestor in 6 of 8 genomic segments, and the PA and NS genes demonstrated 4 and 2 genetic origins, respectively. Six gene segments originated from a putative ancestral clade 2.3.4.4 H5N6 virus that was a possible genetic reassortant among Chinese clade 2.3.4.4 H5N6 HPAIVs. In addition, 2 NS clusters and a PA cluster in Japanese H5N6 HPAIVs originated from Chinese HPAIVs, whereas 3 distinct AIV-derived PA clusters were evident. These results suggest that migratory birds were important in the spread and genetic diversification of clade 2.3.4.4 H5 HPAIVs.
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- 2017
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45. One-pot synthesis of {Mo6 I8 }4+ -doped polystyrene microspheres via a free radical dispersion copolymerisation reaction
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Alexander Shestopalov, Natalya A. Vorotnikova, Yuri V. Mironov, Mariya V. Edeleva, Andrew J. Sutherland, Olga Kurskaya, Konstantin A. Brylev, Michael A. Shestopalov, and Olga A. Efremova
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chemistry.chemical_classification ,Materials science ,Molar mass ,Polymers and Plastics ,Organic Chemistry ,One-pot synthesis ,02 engineering and technology ,Polymer ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Styrene ,chemistry.chemical_compound ,Methacrylic acid ,chemistry ,Polymer chemistry ,Materials Chemistry ,Copolymer ,Polystyrene ,0210 nano-technology ,Dispersion (chemistry) - Abstract
Molybdenum octahedral clusters, when incorporated into an appropriate polymer matrix, are considered as promising agents for a range of biological applications. This work describes the one-pot synthesis, morphology and cellular toxicity of nano-sized polystyrene beads doped with luminescent cluster complexes [(Mo6X8)(NO3)6]2- (X=Cl, Br or I). Specifically, the particles were obtained by free radical dispersion copolymerisation of styrene and methacrylic acid or 4-vinylpyridine in the presence of the cluster complexes. The effects of the cluster loading in the reaction mixture on both the content of the final material and number-average molar mass of the copolymers were evaluated.
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- 2017
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46. Molecular determinants possibly involved in the adaptation of pandemic A(H1N1)09 influenza virus to a new host
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Alesia Romanovskaya, Durymanov Ag, Elena A. Prokopyeva, Alexander Alekseev, Alexander Shestopalov, Kirill Sharshov, and Ivan Sobolev
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0301 basic medicine ,Host (biology) ,viruses ,virus diseases ,Biology ,Virology ,Virus ,respiratory tract diseases ,3. Good health ,03 medical and health sciences ,030104 developmental biology ,Pandemic ,Adaptation - Abstract
Aim: To determine the molecular basis of A(H1N1)pdm09 virus adaptation to a new host. Methods: The pandemic virus A/Russia/01/2009 was adapted to mice by serial lung-to-lung passages. The growth properties, pathogenicity and genome sequences of the mouse-adapted virus were compared with those of the parental strain. Results: The A(H1N1)pdm09 virus caused mouse death after only six lung-to-lung passages. Mutations in the influenza virus antigen were found in the brain, liver, kidney and in intestine by immunohistochemistry. Conclusion: Our findings suggest that multiple mutations in the viral genome promote rapid adaptation of the A(H1N1)pdm09 virus and cause generalized infection in mice.
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- 2017
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47. Genetic characterization of an H2N2 influenza virus isolated from a muskrat in Western Siberia
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Marina A. Gulyaeva, Mizuho Suzuki, Kirill Sharshov, Yoshihiro Sakoda, Alexander Alekseev, Lidia V. Shestopalova, Michael Shchelkanov, Ivan Sobolev, Alexander Shestopalov, and Mariya V. Sivay
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0301 basic medicine ,animal structures ,Hemagglutinin (influenza) ,medicine.disease_cause ,Virus ,influenza virus ,Influenza A Virus, H2N2 Subtype ,03 medical and health sciences ,Orthomyxoviridae Infections ,Virology ,parasitic diseases ,Waterfowl ,medicine ,Animals ,Clade ,Western siberia ,Phylogeny ,General Veterinary ,biology ,Phylogenetic tree ,Arvicolinae ,H2N2 ,phylogenetic analysis ,virus diseases ,Note ,biology.organism_classification ,Influenza A virus subtype H5N1 ,Siberia ,030104 developmental biology ,biology.protein ,muskrat ,Neuraminidase - Abstract
Thirty-two muskrats (Ondatra zibethicus) were captured for surveillance of avian influenza virus in wild waterfowl and mammals near Lake Chany, Western Siberia, Russia. A/muskrat/Russia/63/2014 (H2N2) was isolated from an apparently healthy muskrat using chicken embryos. Based on phylogenetic analysis, the hemagglutinin and neuraminidase genes of this isolate were classified into the Eurasian avian-like influenza virus clade and closely related to low pathogenic avian influenza viruses (LPAIVs) isolated from wild water birds in Italy and Sweden, respectively. Other internal genes were also closely related to LPAIVs isolated from Eurasian wild water birds. Results suggest that interspecies transmission of LPAIVs from wild water birds to semiaquatic mammals occurs, facilitating the spread and evolution of LPAIVs in wetland areas of Western Siberia.
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- 2017
48. A comparative study of hydrophilic phosphine hexanuclear rhenium cluster complexes’ toxicity
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Tatiana N. Pozmogova, L. V. Shestopalova, Marina A. Gulyaeva, Anton A. Ivanov, Alexander Alekseev, Michael A. Shestopalov, Yuri V. Mironov, Konstantin A. Brylev, Olga Kurskaya, Anna A. Krasilnikova, Anastasiya O. Solovieva, Olga A. Efremova, Alexander F. Poveshchenko, and Alexander Shestopalov
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Ligand ,Stereochemistry ,Health, Toxicology and Mutagenesis ,chemistry.chemical_element ,02 engineering and technology ,In vivo toxicity ,Rhenium ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Toxicology ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,Hydrolysis ,Chemistry ,chemistry ,Octahedron ,Toxicity ,Cluster (physics) ,0210 nano-technology ,Phosphine - Abstract
This article evaluates the link between ligands on rhenium clusters and their toxicity., The octahedral rhenium cluster compound Na2H8[{Re6Se8}(P(C2H4CONH2)(C2H4COO)2)6] has recently emerged as a very promising X-ray contrast agent for biomedical applications. However, the synthesis of this compound is rather challenging due to the difficulty in controlling the hydrolysis of the initial P(C2H4CN)3 ligand during the reaction process. Therefore, in this report we compare the in vitro and in vivo toxicity of Na2H8[{Re6Se8}(P(C2H4CONH2)(C2H4COO)2)6] with those of related compounds featuring the fully hydrolysed form of the phosphine ligand, namely Na2H14[{Re6Q8}(P(C2H4COO)3)6] (Q = S or Se). Our results demonstrate that the cytotoxicity and acute in vivo toxicity of the complex Na2H8[{Re6Se8}(P(C2H4CONH2)(C2H4COO)2)6] solutions were considerably lower than those of compounds with the fully hydrolysed ligand P(C2H4COOH)3. Such behavior can be explained by the higher osmolality of Na2H14[{Re6Q8}(P(C2H4COO)3)6] versus Na2H8[{Re6Se8}(P(C2H4CONH2)(C2H4COO)2)6].
- Published
- 2017
49. Comprehensive study of hexarhenium cluster complex Na 4 [{Re 6 Te 8 }(CN) 6 ] – In terms of a new promising luminescent and X-ray contrast agent
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Alexander F. Poveshchenko, L. V. Shestopalova, Anton A. Ivanov, Evgeniy I. Kretov, Yuri V. Mironov, Anna A. Krasilnikova, Alexander Shestopalov, David S. Sergeevichev, Alphiya R. Tsygankova, Tatiana N. Pozmogova, Anastasiya O. Solovieva, Anton I. Smolentsev, Kristina E. Trifonova, and Michael A. Shestopalov
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Biodistribution ,Singlet oxygen ,Stereochemistry ,Biomedical Engineering ,Pharmaceutical Science ,Medicine (miscellaneous) ,Bioengineering ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Combinatorial chemistry ,Median lethal dose ,In vitro ,0104 chemical sciences ,chemistry.chemical_compound ,Membrane ,chemistry ,In vivo ,Toxicity ,Molecular Medicine ,General Materials Science ,0210 nano-technology ,Cytotoxicity - Abstract
Octahedral rhenium cluster complexes may have considerable potential as therapeutic and diagnostic drugs due to their luminescent and X-ray contrast properties, as well as their ability to generate singlet oxygen upon photoirradiation. However, their potential biological effects and toxicity in vitro and in vivo are rather far from being understood. Thus, the aim of our research was to study cytotoxicity, intracellular localization and cellular uptake/elimination kinetics in vitro, biodistribution and acute intravenous toxicity in vivo of a complex Na4[{Re6Te8}(CN)6] as the promising compound for biomedical application. The results have demonstrated that the complex penetrates through cell membranes with the maximum accumulation in cells in 24 h of incubation and have low toxic effects in vitro and in vivo. The median lethal dose (LD50) of intravenously administrated Na4[{Re6Te8}(CN)6] is equal to 1082 ± 83 mg/kg. These findings will be useful for future development of cluster-based agents for different biomedical applications.
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- 2017
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50. Nearly Complete Genome Sequence of a Newcastle Disease Virus Strain Isolated from a Wild Garganey (Spatula querquedula) in Russia
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Marina A. Gulyaeva, Egor V. Shekunov, Alexandra V. Glushchenko, Masatoshi Okamatsu, Keita Matsuno, Tatyana Alikina, Marsel R. Kabilov, Alexander Shestopalov, and Kseniya S. Yurchenko
- Subjects
Whole genome sequencing ,animal structures ,biology ,Strain (biology) ,animal diseases ,viruses ,Genome Sequences ,biochemical phenomena, metabolism, and nutrition ,Common ancestry ,biology.organism_classification ,Newcastle disease ,Virology ,Virus ,Immunology and Microbiology (miscellaneous) ,Virus strain ,Genotype ,embryonic structures ,Genetics ,Molecular Biology ,Western siberia - Abstract
This work describes the nearly complete genome sequence of Newcastle disease virus (NDV) strain NDV/Novosibirsk/garganey/27/2014, which was isolated from a wild garganey in western Siberia, Russia. The NDV strain was classified as belonging to class II of genotype I and was identified as having recent common ancestry with isolates from wild and domestic birds in China and South Korea.
- Published
- 2019
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