11 results on '"Alexander van der Bourg"'
Search Results
2. Layer-Specific Refinement of Sensory Coding in Developing Mouse Barrel Cortex
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Fritjof Helmchen, Balazs Laurenczy, Alexander van der Bourg, Martin Wieckhorst, Heiko J. Luhmann, Vicente Reyes-Puerta, Jenq-Wei Yang, Maik C. Stüttgen, University of Zurich, and Luhmann, Heiko J
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2805 Cognitive Neuroscience ,Male ,0301 basic medicine ,Neurogenesis ,Cognitive Neuroscience ,Period (gene) ,2804 Cellular and Molecular Neuroscience ,610 Medicine & health ,Sensory system ,Stimulation ,Biology ,Somatosensory system ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Calcium imaging ,Physical Stimulation ,Animals ,Premovement neuronal activity ,Neurons ,Afferent Pathways ,Neuronal Plasticity ,10242 Brain Research Institute ,Whisking in animals ,Somatosensory Cortex ,Barrel cortex ,Mice, Inbred C57BL ,030104 developmental biology ,Animals, Newborn ,Vibrissae ,570 Life sciences ,biology ,Female ,Sensory Deprivation ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Rodent rhythmic whisking behavior matures during a critical period around 2 weeks after birth. The functional adaptations of neocortical circuitry during this developmental period remain poorly understood. Here, we characterized stimulus-evoked neuronal activity across all layers of mouse barrel cortex before, during, and after the onset of whisking behavior. Employing multi-electrode recordings and 2-photon calcium imaging in anesthetized mice, we tested responses to rostro-caudal whisker deflections, axial "tapping" stimuli, and their combination from postnatal day 10 (P10) to P28. Within this period, whisker-evoked activity of neurons displayed a general decrease in layer 2/3 (L2/3) and L4, but increased in L5 and L6. Distinct alterations in neuronal response adaptation during the 2-s period of stimulation at ~5 Hz accompanied these changes. Moreover, single-unit analysis revealed that response selectivity in favor of either lateral deflection or axial tapping emerges in deeper layers within the critical period around P14. For superficial layers we confirmed this finding using calcium imaging of L2/3 neurons, which also exhibited emergence of response selectivity as well as progressive sparsification and decorrelation of evoked responses around P14. Our results demonstrate layer-specific development of sensory responsiveness and response selectivity in mouse somatosensory cortex coinciding with the onset of exploratory behavior.
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- 2021
3. The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue
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Rahel Kastli, Hanns Ulrich Zeilhofer, Evgenia Platonova, Ladan Egolf, Stéphane Pagès, Laura Batti, Karen Haenraets, Paola Perin, Alexander van der Bourg, Thomas Topilko, Christian Lüscher, Theofanis Karayannis, Botond Roska, Daniel Kirschenbaum, Noémie Frezel, Urs Ziegler, Fabian F. Voigt, Anna Schueth, Sven Hildebrand, Philipp Bethge, Alard Roebroeck, Roberto Pizzala, Nicolas Renier, Martina Schaettin, Esther T. Stoeckli, Robert A. A. Campbell, Adriano Aguzzi, Daniel Hillier, Fritjof Helmchen, Anthony Holtmaat, University of Zurich, Voigt, Fabian F, RS: FPN CN 11, and Multiscale Imaging of Brain Connectivity
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ORGANS ,1303 Biochemistry ,Microscope ,10208 Institute of Neuropathology ,10050 Institute of Pharmacology and Toxicology ,610 Medicine & health ,Chick Embryo ,Biochemistry ,Article ,law.invention ,1307 Cell Biology ,03 medical and health sciences ,Optics ,law ,Microscopy ,1312 Molecular Biology ,Animals ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,10242 Brain Research Institute ,business.industry ,Cell Biology ,10124 Institute of Molecular Life Sciences ,ddc:616.8 ,Open source ,Microscopy, Fluorescence ,Light sheet fluorescence microscopy ,1305 Biotechnology ,570 Life sciences ,biology ,business ,Software ,Biotechnology ,Clearance - Abstract
Light-sheet microscopy is an ideal technique for imaging large cleared samples; however, the community is still lacking instruments capable of producing volumetric images of centimeter-sized cleared samples with near-isotropic resolution within minutes. Here, we introduce the mesoscale selective plane-illumination microscopy (mesoSPIM) initiative, an open-hardware project for building and operating a light sheet microscope that addresses these challenges and is compatible with any type of cleared or expanded sample (www.mesospim.org).
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- 2019
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4. Developmental divergence of sensory stimulus representation in cortical interneurons
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Daniel Kirschenbaum, Fabian F. Voigt, Theofanis Karayannis, Rasmus Vighagen, Alexander van der Bourg, Fritjof Helmchen, Ali Ozgur Argunsah, Rahel Kastli, Adriano Aguzzi, Asim Iqbal, University of Zurich, and Karayannis, Theofanis
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0301 basic medicine ,Male ,General Physics and Astronomy ,Nervous System ,Mice ,0302 clinical medicine ,Thalamus ,Image Processing, Computer-Assisted ,10064 Neuroscience Center Zurich ,lcsh:Science ,Neurons ,Multidisciplinary ,Microscopy, Confocal ,Whisking in animals ,3100 General Physics and Astronomy ,Electrophysiology ,medicine.anatomical_structure ,Models, Animal ,Cortex ,Female ,Rabbits ,Barrel cortex ,Somatostatin ,hormones, hormone substitutes, and hormone antagonists ,Vasoactive Intestinal Peptide ,Cell type ,Interneuron ,Science ,10208 Institute of Neuropathology ,Sensory system ,610 Medicine & health ,1600 General Chemistry ,Biology ,Stimulus (physiology) ,Neural circuits ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Interneurons ,1300 General Biochemistry, Genetics and Molecular Biology ,medicine ,Biological neural network ,Animals ,10242 Brain Research Institute ,Development of the nervous system ,General Chemistry ,030104 developmental biology ,nervous system ,Vibrissae ,570 Life sciences ,biology ,lcsh:Q ,Calcium ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Vasocative-intestinal-peptide (VIP+) and somatostatin (SST+) interneurons are involved in modulating barrel cortex activity and perception during active whisking. Here we identify a developmental transition point of structural and functional rearrangements onto these interneurons around the start of active sensation at P14. Using in vivo two-photon Ca2+ imaging, we find that before P14, both interneuron types respond stronger to a multi-whisker stimulus, whereas after P14 their responses diverge, with VIP+ cells losing their multi-whisker preference and SST+ neurons enhancing theirs. Additionally, we find that Ca2+ signaling dynamics increase in precision as the cells and network mature. Rabies virus tracings followed by tissue clearing, as well as photostimulation-coupled electrophysiology reveal that SST+ cells receive higher cross-barrel inputs compared to VIP+ neurons at both time points. In addition, whereas prior to P14 both cell types receive direct input from the sensory thalamus, after P14 VIP+ cells show reduced inputs and SST+ cells largely shift to motor-related thalamic nuclei., Sensory neuronal circuits adapt during maturation when animals start to actively interact with the external world. The authors reveal structural and functional rearrangements of the input cortical interneurons receive around the time the animals start active sensation.
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- 2020
5. The mesoSPIM initiative: open-source light-sheet mesoscopes for imaging in cleared tissue
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Urs Ziegler, Laura Batti, Adriano Aguzzi, Christian Lüscher, Robert A. Campbell, Fritjof Helmchen, Theofanis Karayannis, Anthony Holtmaat, Ladan Egolf, Alexander van der Bourg, Daniel Kirschenbaum, Thomas Topilko, Noémie Frezel, Karen Haenraets, Hanns Ulrich Zeilhofer, Fabian F. Voigt, Daniel Hillier, Evgenia Platonova, Esther T. Stoeckli, Rahel Kastli, Stéphane Pagès, Roberto Pizzala, Nicolas Renier, Anna Schueth, Philipp Bethge, Alard Roebroeck, Paola Perin, Botond Roska, Martina Schaettin, and Sven Hildebrand
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0303 health sciences ,Microscope ,Tissue clearing ,Optical sectioning ,business.industry ,Computer science ,01 natural sciences ,law.invention ,010309 optics ,03 medical and health sciences ,Optics ,Open source ,law ,0103 physical sciences ,business ,030304 developmental biology ,Clearance - Abstract
Over the course of the past decade, tissue clearing methods have reached a high level of sophistication with a wide variety of approaches now available[1][1]. To image large cleared samples, light-sheet microscopes have proven to be ideal due to their excellent optical sectioning capability in
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- 2019
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6. Temporal refinement of sensory-evoked activity across layers in developing mouse barrel cortex
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Maik C. Stüttgen, Heiko J. Luhmann, Jenq-Wei Yang, Vicente Reyes-Puerta, Alexander van der Bourg, and Fritjof Helmchen
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Male ,animal structures ,Stimulation ,Sensory system ,Stimulus (physiology) ,Somatosensory system ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Evoked Potentials, Somatosensory ,medicine ,Premovement neuronal activity ,Animals ,030304 developmental biology ,Neurons ,0303 health sciences ,Neuronal Plasticity ,Chemistry ,General Neuroscience ,Whisking in animals ,Somatosensory Cortex ,Barrel cortex ,medicine.anatomical_structure ,Cerebral cortex ,Vibrissae ,Female ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Rhythmic whisking behavior in rodents fully develops during a critical period about 2 weeks after birth, in parallel with the maturation of other sensory modalities and the onset of exploratory locomotion. How whisker-related sensory processing develops during this period in the primary somatosensory cortex (S1) remains poorly understood. Here, we characterized neuronal activity evoked by single- or dual-whisker stimulation patterns in developing S1, before, during and after the occurrence of active whisking. Employing multi-electrode recordings in all layers of barrel cortex in urethane-anesthetized mice, we find layer-specific changes in multi-unit activity for principal and neighboring barrel columns. While whisker stimulation evoked similar early responses (0-50 ms post-stimulus) across development, the late response (50-150 ms post-stimulus) decreased in all layers with age. Furthermore, peak onset times and the duration of the late response decreased in all layers across age groups. Responses to paired-pulse stimulation showed increases in spiking precision and in paired-pulse ratios in all cortical layers during development. Sequential activation of two neighboring whiskers with varying stimulus intervals evoked distinct response profiles in the activated barrel columns, depending on the direction and temporal separation of the stimuli. In conclusion, our findings indicate that the temporal sharpening of sensory-evoked activity coincides with the onset of active whisking.
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- 2018
7. Multiphoton microscopy in every lab: the promise of ultrafast semiconductor disk lasers
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Sandro M. Link, Ursula Keller, Fritjof Helmchen, Alexander van der Bourg, Stefano Carta, Florian Emaury, Philipp Bethge, Fabian F. Voigt, and Dominik Waldburger
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Materials science ,business.industry ,Laser ,Vertical-external-cavity surface-emitting-laser ,Semiconductor laser theory ,law.invention ,Optics ,law ,Microscopy ,Femtosecond ,Sapphire ,Optoelectronics ,Disk laser ,business ,Ultrashort pulse - Abstract
We use an ultrafast diode-pumped semiconductor disk laser (SDL) to demonstrate several applications in multiphoton microscopy. The ultrafast SDL is based on an optically pumped Vertical External Cavity Surface Emitting Laser (VECSEL) passively mode-locked with a semiconductor saturable absorber mirror (SESAM) and generates 170-fs pulses at a center wavelength of 1027 nm with a repetition rate of 1.63 GHz. We demonstrate the suitability of this laser for structural and functional multiphoton in vivo imaging in both Drosophila larvae and mice for a variety of fluorophores (including mKate2, tdTomato, Texas Red, OGB-1, and R-CaMP1.07) and for endogenous second-harmonic generation in muscle cell sarcomeres. We can demonstrate equivalent signal levels compared to a standard 80-MHz Ti:Sapphire laser when we increase the average power by a factor of 4.5 as predicted by theory. In addition, we compare the bleaching properties of both laser systems in fixed Drosophila larvae and find similar bleaching kinetics despite the large difference in pulse repetition rates. Our results highlight the great potential of ultrafast diode-pumped SDLs for creating a cost-efficient and compact alternative light source compared to standard Ti:Sapphire lasers for multiphoton imaging.
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- 2017
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8. Multiphoton in vivo imaging with a femtosecond semiconductor disk laser
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Sandro M. Link, Ursula Keller, Fabian F. Voigt, Alexander van der Bourg, Dominik Waldburger, Florian Emaury, Fritjof Helmchen, Stefano Carta, Philipp Bethge, and University of Zurich
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0301 basic medicine ,610 Medicine & health ,3107 Atomic and Molecular Physics, and Optics ,01 natural sciences ,Article ,law.invention ,010309 optics ,03 medical and health sciences ,Optics ,law ,Fiber laser ,0103 physical sciences ,10242 Brain Research Institute ,business.industry ,Laser ,Vertical-external-cavity surface-emitting-laser ,Atomic and Molecular Physics, and Optics ,030104 developmental biology ,Semiconductor ,Femtosecond ,1305 Biotechnology ,Sapphire ,570 Life sciences ,biology ,Optoelectronics ,Disk laser ,business ,Ultrashort pulse ,Biotechnology - Abstract
We use an ultrafast diode-pumped semiconductor disk laser (SDL) to demonstrate several applications in multiphoton microscopy. The ultrafast SDL is based on an optically pumped Vertical External Cavity Surface Emitting Laser (VECSEL) passively mode-locked with a semiconductor saturable absorber mirror (SESAM) and generates 170-fs pulses at a center wavelength of 1027 nm with a repetition rate of 1.63 GHz. We demonstrate the suitability of this laser for structural and functional multiphoton in vivo imaging in both Drosophila larvae and mice for a variety of fluorophores (including mKate2, tdTomato, Texas Red, OGB-1, and R-CaMP1.07) and for endogenous second-harmonic generation in muscle cell sarcomeres. We can demonstrate equivalent signal levels compared to a standard 80-MHz Ti:Sapphire laser when we increase the average power by a factor of 4.5 as predicted by theory. In addition, we compare the bleaching properties of both laser systems in fixed Drosophila larvae and find similar bleaching kinetics despite the large difference in pulse repetition rates. Our results highlight the great potential of ultrafast diode-pumped SDLs for creating a cost-efficient and compact alternative light source compared to standard Ti:Sapphire lasers for multiphoton imaging.
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- 2017
9. Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance
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Alexander van der Bourg, Maya Mills, Amy S. Chuong, Adrian Cheng, Andrea Benucci, Atsushi Miyawaki, Ladan Egolf, Matteo Carandini, Nathan C. Klapoetke, Fritjof Helmchen, Bosiljka Tasic, Edward S. Boyden, Susan M. Sunkin, Lu Li, R. Clay Reid, Yusuke Niino, Andras Nagy, Claudio Monetti, Ruth M. Empson, Hong Gu, Linda Madisen, Thomas Knöpfel, Thuc Nghi Nguyen, Aleena R. Garner, Hongkui Zeng, Daisuke Shimaoka, University of Zurich, Zeng, Hongkui, Massachusetts Institute of Technology. Media Laboratory, McGovern Institute for Brain Research at MIT, Chuong, Amy S, Klapoetke, Nathan Cao, and Boyden, Edward
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Genetically modified mouse ,0303 health sciences ,10242 Brain Research Institute ,Effector ,General Neuroscience ,Transgene ,Neuroscience(all) ,2800 General Neuroscience ,Locus (genetics) ,610 Medicine & health ,Computational biology ,Optogenetics ,Biology ,3. Good health ,Viral vector ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,Recombinase ,570 Life sciences ,biology ,Neuroscience ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
available in PMC 2016 March 04, An increasingly powerful approach for studying brain circuits relies on targeting genetically encoded sensors and effectors to specific cell types. However, current approaches for this are still limited in functionality and specificity. Here we utilize several intersectional strategies to generate multiple transgenic mouse lines expressing high levels of novel genetic tools with high specificity. We developed driver and double reporter mouse lines and viral vectors using the Cre/Flp and Cre/Dre double recombinase systems and established a new, retargetable genomic locus, TIGRE, which allowed the generation of a large set of Cre/tTA-dependent reporter lines expressing fluorescent proteins, genetically encoded calcium, voltage, or glutamate indicators, and optogenetic effectors, all at substantially higher levels than before. High functionality was shown in example mouse lines for GCaMP6, YCX2.60, VSFP Butterfly 1.2, and Jaws. These novel transgenic lines greatly expand the ability to monitor and manipulate neuronal activities with increased specificity., National Institutes of Health (U.S.) (NIH grant DA028298), Wellcome Trust (London, England) (Grant), National Institutes of Health (U.S.) (NIH grant MH085500)
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- 2015
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10. Nogo-A deletion increases the plasticity of the optokinetic response and changes retinal projection organization in the adult mouse visual system
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Alexander van der Bourg, Flora Vajda, Franziska Christ, Anna Guzik-Kornacka, Martin E. Schwab, Sandrine Joly, and Vincent Pernet
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0301 basic medicine ,Male ,Histology ,Time Factors ,genetic structures ,Genotype ,Nogo Proteins ,Visual system ,Biology ,Blindness ,Retina ,Contrast Sensitivity ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,mental disorders ,Neuroplasticity ,medicine ,Animals ,Visual Pathways ,Nystagmus, Optokinetic ,Vision, Ocular ,Visual Cortex ,Mice, Knockout ,Neuronal Plasticity ,General Neuroscience ,Retinal ,Optic Nerve ,Optokinetic reflex ,Mice, Inbred C57BL ,Monocular deprivation ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,Visual cortex ,Phenotype ,chemistry ,Optic nerve ,Anatomy ,Neuroscience ,psychological phenomena and processes ,030217 neurology & neurosurgery ,Gene Deletion ,Myelin Proteins ,Photic Stimulation ,Spatial Navigation - Abstract
The inhibitory action of Nogo-A on axonal growth has been well described. However, much less is known about the effects that Nogo-A could exert on the plasticity of neuronal circuits under physiological conditions. We investigated the effects of Nogo-A knock-out (KO) on visual function of adult mice using the optokinetic response (OKR) and the monocular deprivation (MD)-induced OKR plasticity and analyzed the anatomical organization of the eye-specific retinal projections. The spatial frequency sensitivity was higher in intact Nogo-A KO than in wild-type (WT) mice. After MD, Nogo-A KO mice reached a significantly higher spatial frequency and contrast sensitivity. Bilateral ablation of the visual cortex did not affect the OKR sensitivity before MD but reduced the MD-induced enhancement of OKR by approximately 50% in Nogo-A KO and WT mice. These results suggest that cortical and subcortical brain structures contribute to the OKR plasticity. The tracing of retinal projections to the dorsal lateral geniculate nucleus (dLGN) revealed that the segregation of eye-specific terminals was decreased in the adult Nogo-A KO dLGN compared with WT mice. Strikingly, MD of the right eye led to additional desegregation of retinal projections in the left dLGN of Nogo-A KO but not in WT mice. In particular, MD promoted ectopic varicosity formation in Nogo-A KO dLGN axons. The present data show that Nogo-A restricts visual experience-driven plasticity of the OKR and plays a role in the segregation and maintenance of retinal projections to the brain.
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- 2014
11. Layer-Specific Refinement of Sensory Coding in Developing Mouse Barrel Cortex
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Alexander van der Bourg, Jw, Yang, Reyes-Puerta V, Laurenczy B, Wieckhorst M, Mc, Stüttgen, Hj, Luhmann, and Helmchen F
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