92 results on '"Alexei F. Licea-Navarro"'
Search Results
2. First pan-specific vNAR against human TGF-β as a potential therapeutic application: in silico modeling assessment
- Author
-
Mirna Burciaga-Flores, Ana Laura Márquez-Aguirre, Salvador Dueñas, Jahaziel Gasperin-Bulbarela, Alexei F. Licea-Navarro, and Tanya A. Camacho-Villegas
- Subjects
Medicine ,Science - Abstract
Abstract Immunotherapies based on antibody fragments have been developed and applied to human diseases, describing novel antibody formats. The vNAR domains have a potential therapeutic use related to their unique properties. This work used a non-immunized Heterodontus francisci shark library to obtain a vNAR with recognition of TGF-β isoforms. The isolated vNAR T1 selected by phage display demonstrated binding of the vNAR T1 to TGF-β isoforms (-β1, -β2, -β3) by direct ELISA assay. These results are supported by using for the first time the Single-Cycle kinetics (SCK) method for Surface plasmon resonance (SPR) analysis for a vNAR. Also, the vNAR T1 shows an equilibrium dissociation constant (K D ) of 9.61 × 10–8 M against rhTGF-β1. Furthermore, the molecular docking analysis revealed that the vNAR T1 interacts with amino acid residues of TGF-β1, which are essential for interaction with type I and II TGF-β receptors. The vNAR T1 is the first pan-specific shark domain reported against the three hTGF-β isoforms and a potential alternative to overcome the challenges related to the modulation of TGF-β levels implicated in several human diseases such as fibrosis, cancer, and COVID-19.
- Published
- 2023
- Full Text
- View/download PDF
3. Unleashing the power of shark variable single domains (VNARs): broadly neutralizing tools for combating SARS-CoV-2
- Author
-
Olivia Cabanillas-Bernal, Blanca J. Valdovinos-Navarro, Karla E. Cervantes-Luevano, Noemi Sanchez-Campos, and Alexei F. Licea-Navarro
- Subjects
VNAR ,single-domain antibody ,phage display ,SARS-CoV-2 ,COVID-19 ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The pandemic caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) generated a joint global effort to develop vaccines and other treatments that could mitigate the negative effects and the rapid spread of the virus. Single-domain antibodies derived from various sources, including cartilaginous fish, camelids, and humans, have gained attention as promising therapeutic tools against coronavirus disease 2019. Shark-derived variable new antigen receptors (VNARs) have emerged as the smallest naturally occurring antigen-binding molecules. Here, we compile and review recent published studies on VNARs with the capacity to recognize and/or neutralize SARS-CoV-2. We found a close balance between the use of natural immune libraries and synthetic VNAR libraries for the screening against SARS-CoV-2, with phage display being the preferred display technology for the selection of VNARs against this virus. In addition, we discuss potential modifications and engineering strategies employed to improve the neutralization potential of VNARs, such as exploring fusion with the Fc domain of human Immunoglobulin G (IgG) to increase avidity and therapeutic potential. This research highlights the potential of VNARs as powerful molecular tools in the fight against infectious diseases.
- Published
- 2023
- Full Text
- View/download PDF
4. Detection of human pathogenic bacteria in rectal DNA samples from Zalophus californianus in the Gulf of California, Mexico
- Author
-
Francesco Cicala, David Ramírez-Delgado, Ricardo Gómez-Reyes, Marcel Martínez-Porchas, Jorge Rojas-Vargas, Liliana Pardo-López, and Alexei F. Licea-Navarro
- Subjects
Medicine ,Science - Abstract
Abstract Human intrusions into undisturbed wildlife areas greatly contribute to the emergence of infectious diseases. To minimize the impacts of novel emerging infectious diseases (EIDs) on human health, a comprehensive understanding of the microbial species that reside within wildlife species is required. The Gulf of California (GoC) is an example of an undisturbed ecosystem. However, in recent decades, anthropogenic activities within the GoC have increased. Zalophus californianus has been proposed as the main sentinel species in the GoC; hence, an assessment of sea lion bacterial microbiota may reveal hidden risks for human health. We evaluated the presence of potential human pathogenic bacterial species from the gastrointestinal (GI) tracts of wild sea lions through a metabarcoding approach. To comprehensively evaluate this bacterial consortium, we considered the genetic information of six hypervariable regions of 16S rRNA. Potential human pathogenic bacteria were identified down to the species level by integrating the RDP and Pplacer classifier outputs. The combined genetic information from all analyzed regions suggests the presence of at least 44 human pathogenic bacterial species, including Shigella dysenteriae and Bacillus anthracis. Therefore, the risks of EIDs from this area should be not underestimated.
- Published
- 2022
- Full Text
- View/download PDF
5. Chimeric Peptides from Californiconus californicus and Heterodontus francisci with Antigen-Binding Capacity: A Conotoxin Scaffold to Create Non-Natural Antibodies (NoNaBodies)
- Author
-
Salvador Dueñas, Teresa Escalante, Jahaziel Gasperin-Bulbarela, Johanna Bernáldez-Sarabia, Karla Cervantes-Luévano, Samanta Jiménez, Noemí Sánchez-Campos, Olivia Cabanillas-Bernal, Blanca J. Valdovinos-Navarro, Angélica Álvarez-Lee, Marco A. De León-Nava, and Alexei F. Licea-Navarro
- Subjects
NoNaBody ,miniprotein design ,VNAR and conotoxin fusion ,chimeric peptide ,protein scaffold ,Medicine - Abstract
Research into various proteins capable of blocking metabolic pathways has improved the detection and treatment of multiple pathologies associated with the malfunction and overexpression of different metabolites. However, antigen-binding proteins have limitations. To overcome the disadvantages of the available antigen-binding proteins, the present investigation aims to provide chimeric antigen-binding peptides by binding a complementarity-determining region 3 (CDR3) of variable domains of new antigen receptors (VNARs) with a conotoxin. Six non-natural antibodies (NoNaBodies) were obtained from the complexes of conotoxin cal14.1a with six CDR3s from the VNARs of Heterodontus francisci and two NoNaBodies from the VNARs of other shark species. The peptides cal_P98Y vs. vascular endothelial growth factor 165 (VEGF165), cal_T10 vs. transforming growth factor beta (TGF-β), and cal_CV043 vs. carcinoembryonic antigen (CEA) showed in-silico and in vitro recognition capacity. Likewise, cal_P98Y and cal_CV043 demonstrated the capacity to neutralize the antigens for which they were designed.
- Published
- 2023
- Full Text
- View/download PDF
6. Smart Nanoformulation Based on Stimuli-Responsive Nanogels and Curcumin: Promising Therapy against Colon Cancer
- Author
-
Lizbeth A. Manzanares-Guevara, Angel Licea-Claverie, Irasema Oroz-Parra, Johanna Bernaldez-Sarabia, Fernando Diaz-Castillo, and Alexei F. Licea-Navarro
- Subjects
Chemistry ,QD1-999 - Published
- 2020
- Full Text
- View/download PDF
7. Conotoxin Patenting Trends in Academia and Industry
- Author
-
Noemi Sanchez-Campos, Johanna Bernaldez-Sarabia, and Alexei F. Licea-Navarro
- Subjects
Conus patents ,conotoxin patent ,conopeptide patent ,Conus ,patent ,Orbit ,Biology (General) ,QH301-705.5 - Abstract
Sea snails of the genus Conus produce toxins that have been the subjects of numerous studies, projects, publications, and patents over the years. Since Conus toxins were discovered in the 1960s, their biological activity has been thought to have high pharmaceutical potential that could be explored beyond the limits of academic laboratories. We reviewed 224 patent documents related to conotoxins and conopeptides globally to determine the course that innovation and development has taken over the years, their primary applications, the technological trends over the last six years, and the leaders in the field, since the only previous patent review was performed in 2015 and focused in USA valid patents. In addition, we explored which countries/territories protect their inventions and patents and the most relevant collaborations among assignees. We also evaluated whether academia or pharmaceutical companies are the future of conotoxin research. We concluded that the 224 conotoxin patents reviewed in this study have more academic value than industrial value, which was noted by the number of active patents that have not yet been licensed and the contributions to medical research, especially as tools to study neuropathic pain, inflammation, immunology, drug design, receptor binding sites, cancer, neurotransmission, epilepsy, peptide biosynthesis, and depression. The aim of this review is to provide an overview of the current state of conotoxin patents, their main applications, and success based on the number of licensing and products in the market.
- Published
- 2022
- Full Text
- View/download PDF
8. COVID-19 Neutralizing Antibodies in Breast Milk of Mothers Vaccinated with Three Different Vaccines in Mexico
- Author
-
Olivia Cabanillas-Bernal, Karla Cervantes-Luevano, Gonzalo Isai Flores-Acosta, Johanna Bernáldez-Sarabia, and Alexei F. Licea-Navarro
- Subjects
breast milk ,neutralizing antibodies ,vaccines ,COVID-19 ,SARS-CoV-2 ,Medicine - Abstract
Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has caused the largest pandemic of this century, and all aspects of this virus are being studied. The efforts to mitigate the negative effects associated with the SARS-CoV-2 pandemic have culminated in the development of several vaccines that are effective and safe for use to the general population. However, one aspect that remains relatively underexplored is the efficacy of different vaccines technologies (mRNA and Adenovirus) in providing passive immunity to infants through breastmilk of vaccinated mothers, and whether the antibodies passed through breast milk are functional. In this study, using a Micro-neutralization assay, we evaluate the presence of neutralizing antibodies in breast milk of lactating mothers vaccinated against SARS-CoV-2 with the Pfizer-BioNtech, Johnson & Johnson (J&J)/Janssen, and CanSino Biologics vaccines. Our results show the greatest neutralizing effect in breast milk from mothers vaccinated with Pfizer, followed by mothers vaccinated with J&J. CanSino vaccinations yielded the breast milk with the least neutralizing effects. The results found in this study relating to the neutralizing capacity of breast milk against SARS-CoV-2 highlight the importance of corresponding health authorities recommending vaccination to lactating mothers and of the continuance of breastfeeding to infants due to the potential health benefits.
- Published
- 2022
- Full Text
- View/download PDF
9. Potential Therapeutic Applications of Synthetic Conotoxin s-cal14.2b, Derived from Californiconus californicus, for Treating Type 2 Diabetes
- Author
-
Pavel H. Lugo-Fabres, Leslie M. Otero-Sastre, Johanna Bernáldez-Sarabia, Tanya A. Camacho-Villegas, Noemi Sánchez-Campos, Janeth Serrano-Bello, Luis A. Medina, Saé Muñiz-Hernández, Lizbeth de la Cruz, Isabel Arenas, Antonio Barajas-Martínez, David E. Garcia, Linda Nuñez-Garcia, Jorge González-Canudas, and Alexei F. Licea-Navarro
- Subjects
Californiconus californicus ,conotoxins ,s-cal14.2b ,type 2 diabetes ,conodrugs ,Biology (General) ,QH301-705.5 - Abstract
The FDA’s approval of peptide drugs such as Ziconotide or Exendin for pain relief and diabetes treatment, respectively, enhanced the interest to explore novel conotoxins from Conus species venom. In general, conotoxins can be used in pathologies where voltage-gated channels, membrane receptors, or ligands alter normal physiological functions, as in metabolic diseases such as Type 2 diabetes. In this study, the synthetic cal14.2b (s-cal14.2b) from the unusual Californiconus californicus demonstrated bioactivity on NIT-1 insulinoma cell lines stimulating insulin secretion detecting by high performance liquid chromatography (HPLC). Accordingly, s-cal14.2b increased the CaV1.2/1.3 channel-current by 35 ± 4% with a recovery τ of 10.3 ± 4 s in primary cell culture of rat pancreatic β-cells. The in vivo results indicated a similar effect of insulin secretion on mice in the glucose tolerance curve model by reducing the glucose from 500 mg/dL to 106 mg/dL in 60 min, compared to the negative control of 325 mg/dL at the same time. The PET-SCAN with radiolabeling 99mTc-s-cal14.2b demonstrated biodistribution and accumulation in rat pancreas with complete depuration in 24 h. These findings show the potential therapeutic use of s-cal14.2b in endocrinal pathologies such as early stages of Type 2 Diabetes where the pancreas’s capability to produce insulin is still effective.
- Published
- 2021
- Full Text
- View/download PDF
10. Molecular Analysis of Streptomycin Resistance Genes in Clinical Strains of Mycobacterium tuberculosis and Biocomputational Analysis of the MtGidB L101F Variant
- Author
-
Álvaro Rodríguez-García, Rosa E. Mares-Alejandre, Patricia L. A. Muñoz-Muñoz, Samuel Ruvalcaba-Ruiz, Ricardo A. González-Sánchez, Johanna Bernáldez-Sarabia, Samuel G. Meléndez-López, Alexei F. Licea-Navarro, and Marco A. Ramos-Ibarra
- Subjects
Mycobacterium tuberculosis ,streptomycin resistance ,molecular analysis ,biocomputational analysis ,clinical isolates ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Globally, tuberculosis (TB) remains a prevalent threat to public health. In 2019, TB affected 10 million people and caused 1.4 million deaths. The major challenge for controlling this infectious disease is the emergence and spread of drug-resistant Mycobacterium tuberculosis, the causative agent of TB. The antibiotic streptomycin is not a current first-line anti-TB drug. However, WHO recommends its use in patients infected with a streptomycin-sensitive strain. Several mutations in the M. tuberculosisrpsL, rrs and gidB genes have proved association with streptomycin resistance. In this study, we performed a molecular analysis of these genes in clinical isolates to determine the prevalence of known or novel mutations. Here, we describe the genetic analysis outcome. Furthermore, a biocomputational analysis of the MtGidB L101F variant, the product of a novel mutation detected in gidB during molecular analysis, is also reported as a theoretical approach to study the apparent genotype-phenotype association.
- Published
- 2021
- Full Text
- View/download PDF
11. Ca-Alginate-PEGMA Hydrogels for In Situ Delivery of TGF-β Neutralizing Antibodies in a Mouse Model of Wound Healing
- Author
-
Jahaziel Gasperin-Bulbarela, Ana B. Castro-Ceseña, Tanya Camacho-Villegas, Pavel H. Lugo-Fabres, Nestor Emmanuel Díaz-Martínez, Eduardo Padilla-Camberos, Raquel Echavarría, and Alexei F. Licea-Navarro
- Subjects
hydrogel ,wound healing ,Ca-alginate ,poly(ethylene glycol) methyl ether methacrylate ,1D11 ,TGF-β ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Hydrogels provide effective alternatives for drug delivery when therapeutics cannot be applied directly to a wound, or if adverse effects are associated with systemic administration. However, drug delivery vehicles need to be biocompatible and biodegradable and exhibit sufficient mechanical strength to withstand handling and different physiological conditions, such as those encountered during topical administration of a therapeutic. Wound healing can be divided into three phases stimulated by transforming growth factor-beta (TGF-β) and, subsequently, targeted therapeutics have been developed to inhibit this cytokine for the treatment of chronic wounds and to prevent scarring. In this study, the capacity of calcium alginate hydrogels plasticized with poly(ethylene glycol) methyl ether methacrylate (PEGMA) to deliver anti-TGF-β antibodies (1D11.16.8) to a wound was investigated in situ. Three levels of antibodies, 10, 50, and 100 μg, were loaded into calcium-alginate-PEGMA hydrogels and evaluated in an excisional wound model in mice. Hydrogels containing 50 and 100 μg 1D11.16.8 produced less inflammation, accompanied by a marked reduction in collagen deposition and cell infiltration. These findings demonstrate the capacity of calcium-alginate-PEGMA hydrogels to deliver larger proteins, such as antibodies, to the site of a wound.
- Published
- 2021
- Full Text
- View/download PDF
12. DNA Extraction with DNAzol and LAMP, Performed in a Heating Block as a Simple Procedure for Detection of Mycobacterium tuberculosis in Sputum Specimens
- Author
-
Álvaro Rodríguez-García, Rosa E. Mares, Patricia L. A. Muñoz, Samuel G. Meléndez-López, Alexei F. Licea-Navarro, and Marco A. Ramos
- Subjects
tuberculosis ,molecular detection ,loop-mediated isothermal amplification ,Biology (General) ,QH301-705.5 - Abstract
Tuberculosis (TB) remains as a major public health issue in developing countries. Accurate detection is essential for the proper management of patients with active disease. Here, we present a simple DNAzol-LAMP (loop-mediated isothermal amplification) procedure for the detection of Mycobacterium tuberculosis in sputum specimens. Twenty smear-positive sputum samples were analyzed as follows: (i) Genetic material was extracted by a standard DNAzol protocol, and (ii) mycobacterial DNA was detected by a typical TB-specific loop-mediated isothermal amplification method. Results and diagnostic test performance attests to the suitability of the proposed procedure.
- Published
- 2018
- Full Text
- View/download PDF
13. Intraocular Penetration of a vNAR: In Vivo and In Vitro VEGF165 Neutralization
- Author
-
Tanya A. Camacho-Villegas, María Teresa Mata-González, Walter García-Ubbelohd, Linda Núñez-García, Carolina Elosua, Jorge F. Paniagua-Solis, and Alexei F. Licea-Navarro
- Subjects
vNAR ,single chain binding domain ,VEGF165 ,intraocular penetration ,Heterodontus fransisci ,horn shark ,age-related macular degeneration ,diabetic retinopathy ,Biology (General) ,QH301-705.5 - Abstract
Variable new antigen receptor domain (vNAR) antibodies are novel, naturally occurring antibodies that can be isolated from naïve, immune or synthetic shark libraries. These molecules are very interesting to the biotechnology and pharmaceutical industries because of their unique characteristics related to size and tissue penetrability. There have been some approved anti-angiogenic therapies for ophthalmic conditions, not related to vNAR. This includes biologics and chimeric proteins that neutralize vascular endothelial growth factor (VEGF)165, which are injected intravitreal, causing discomfort and increasing the possibility of infection. In this paper, we present a vNAR antibody against human recombinant VEGF165 (rhVEGF165) that was isolated from an immunized Heterodontus francisci shark. A vNAR called V13, neutralizes VEGF165 cytokine starting at 75 μg/mL in an in vitro assay based on co-culture of normal human dermal fibroblasts (NHDFs) and green fluorescence protein (GFP)-labeled human umbilical vein endothelial cells (HUVECs) cells. In the oxygen-induced retinopathy model in C57BL/6:Hsd mice, we demonstrate an endothelial cell count decrease. Further, we demonstrate the intraocular penetration after topical administration of 0.1 μg/mL of vNAR V13 by its detection in aqueous humor in New Zealand rabbits with healthy eyes after 3 h of application. These findings demonstrate the potential of topical application of vNAR V13 as a possible new drug candidate for vascular eye diseases.
- Published
- 2018
- Full Text
- View/download PDF
14. In Vitro Effect of the Synthetic cal14.1a Conotoxin, Derived from Conus californicus, on the Human Parasite Toxoplasma gondii
- Author
-
Marco A. De León-Nava, Eunice Romero-Núñez, Angélica Luna-Nophal, Johanna Bernáldez-Sarabia, Liliana N. Sánchez-Campos, Alexei F. Licea-Navarro, Jorge Morales-Montor, and Saé Muñiz-Hernández
- Subjects
conotoxin ,Conus californicus ,Toxoplasma gondii ,antiparasitic toxin ,parasite replication ,host-cell invasion ,Biology (General) ,QH301-705.5 - Abstract
Toxins that are secreted by cone snails are small peptides that are used to treat several diseases. However, their effects on parasites with human and veterinary significance are unknown. Toxoplasma gondii is an opportunistic parasite that affects approximately 30% of the world’s population and can be lethal in immunologically compromised individuals. The conventional treatment for this parasitic infection has remained the same since the 1950s, and its efficacy is limited to the acute phase of infection. These findings have necessitated the search for new drugs that specifically target T. gondii. We examined the effects of the synthetic toxin cal14.1a (s-cal14.1a) from C. californicus on the tachyzoite form of T. gondii. Our results indicate that, at micromolar concentrations, s-cal14.1a lowers viability and inhibits host cell invasion (by 50% and 61%, respectively) on exposure to extracellular parasites. Further, intracellular replication decreased significantly while viability of the host cell was unaffected. Our study is the first report on the antiparasitic activity of a synthetic toxin of C. californicus.
- Published
- 2016
- Full Text
- View/download PDF
15. Apoptosis Activation in Human Lung Cancer Cell Lines by a Novel Synthetic Peptide Derived from Conus californicus Venom
- Author
-
Irasema Oroz-Parra, Mario Navarro, Karla E. Cervantes-Luevano, Carolina Álvarez-Delgado, Guy Salvesen, Liliana N. Sanchez-Campos, and Alexei F. Licea-Navarro
- Subjects
lung cancer ,synthetic peptide ,apoptotic-related genes ,caspase-3 and -7 ,apoptosis ,pathway ,Medicine - Abstract
Lung cancer is one of the most common types of cancer in men and women and a leading cause of death worldwide resulting in more than one million deaths per year. The venom of marine snails Conus contains up to 200 pharmacologically active compounds that target several receptors in the cell membrane. Due to their diversity and specific binding properties, Conus toxins hold great potential as source of new drugs against cancer. We analyzed the cytotoxic effect of a 17-amino acid synthetic peptide (s-cal14.1a) that is based on a native toxin (cal14.1a) isolated from the sea snail Conus californicus. Cytotoxicity studies in four lung cancer cell lines were complemented with measurement of gene expression of apoptosis-related proteins Bcl-2, BAX and the pro-survival proteins NFκB-1 and COX-2, as well as quantification of caspase activity. Our results showed that H1299 and H1437 cell lines treated with s-call4.1a had decreased cell viability, activated caspases, and reduced expression of the pro-survival protein NFκB-1. To our knowledge, this is the first report describing activation of apoptosis in human lung cancer cell lines by s-cal14.1a and we offer insight into the possible mechanism of action.
- Published
- 2016
- Full Text
- View/download PDF
16. Neutralizing Ability of a Single Domain VNAR Antibody: In Vitro Neutralization of SARS-CoV-2 Variants of Concern
- Author
-
Blanca J. Valdovino-Navarro, Salvador Dueñas, G. Isaí Flores-Acosta, Jahaziel Gasperin-Bulbarela, Johanna Bernaldez-Sarabia, Olivia Cabanillas-Bernal, Karla E. Cervantes-Luevano, and Alexei F. Licea-Navarro
- Subjects
SARS-CoV-2 ,Organic Chemistry ,COVID-19 ,General Medicine ,Single-Domain Antibodies ,Antibodies, Viral ,Antibodies, Neutralizing ,Catalysis ,Computer Science Applications ,COVID-19 neutralizing antibody ,single-domain antibody ,spike protein ,VNAR therapy ,Inorganic Chemistry ,Epitopes ,Neutralization Tests ,Spike Glycoprotein, Coronavirus ,Humans ,Angiotensin-Converting Enzyme 2 ,Physical and Theoretical Chemistry ,Molecular Biology ,Spectroscopy - Abstract
Severe Acute Respiratory Syndrome Coronavirus 2 is the causal pathogen of coronavirus disease 2019 (COVID-19). The emergence of new variants with different mutational patterns has limited the therapeutic options available and complicated the development of effective neutralizing antibodies targeting the spike (S) protein. Variable New Antigen Receptors (VNARs) constitute a neutralizing antibody technology that has been introduced into the list of possible therapeutic options against SARS-CoV-2. The unique qualities of VNARs, such as high affinities for target molecules, capacity for paratope reformatting, and relatively high stability, make them attractive molecules to counteract the emerging SARS-CoV-2 variants. In this study, we characterized a VNAR antibody (SP240) that was isolated from a synthetic phage library of VNAR domains. In the phage display, a plasma with high antibody titers against SARS-CoV-2 was used to selectively displace the VNAR antibodies bound to the antigen SARS-CoV-2 receptor binding domain (RBD). In silico data suggested that the SP240 binding epitopes are located within the ACE2 binding interface. The neutralizing ability of SP240 was tested against live Delta and Omicron SARS-CoV-2 variants and was found to clear the infection of both variants in the lung cell line A549-ACE2-TMPRSS2. This study highlights the potential of VNARs to act as neutralizing antibodies against emerging SARS-CoV-2 variants.
- Published
- 2022
- Full Text
- View/download PDF
17. Improvement of the wound healing properties of hydrogels with N-acetylcysteine through their modification with methacrylate-containing polymers
- Author
-
Nestor Emmanuel Díaz-Martínez, Lesly S Gomez-Aparicio, Pavel H. Lugo-Fabres, Alexei F. Licea-Navarro, Johanna Bernáldez-Sarabia, Tanya A. Camacho-Villegas, Ana B. Castro-Ceseña, and Eduardo Padilla-Camberos
- Subjects
0303 health sciences ,Antioxidant ,integumentary system ,Chemistry ,Regeneration (biology) ,medicine.medical_treatment ,Biomedical Engineering ,Human skin ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Methacrylate ,03 medical and health sciences ,chemistry.chemical_compound ,Hemostasis ,Self-healing hydrogels ,medicine ,General Materials Science ,0210 nano-technology ,Wound healing ,Ethylene glycol ,030304 developmental biology ,Biomedical engineering - Abstract
Hydrogels with antioxidant activity have shown to significantly improve the standard of care, because they promote efficient wound healing, i.e. regeneration. N-Acetylcysteine (NAC) is an antioxidant amino acid derivative that promotes complete tissue restoration. However, NAC has anticoagulant properties that may also hinder blood coagulation, which is crucial for hydrogels for wound healing applications. To take advantage of the regenerative activity of NAC while avoiding hampering the hemostasis stage during wound healing, we modified gelatin-NAC with the methacrylate-containing polymers 2-hydroxyethyl methacrylate (H) and poly(ethylene glycol) methyl ether methacrylate (P) to produce Gel-HP-NAC. These hydrogels clotted more blood and faster than Gel and Gel-NAC hydrogels, while maintaining fluid absorption properties adequate to promote wound healing. Similarly, there were more viable human skin fibroblasts after 10 days cultured in Gel-HP-NAC compared with Gel and Gel-NAC. A mouse full-thickness skin wound model demonstrated that Gel-HP-NAC hydrogels improved the wound healing process as compared to the untreated group as proved by the increased wound closure rates and re-epithelialization. Histology of the biopsied tissues indicated more organized collagen deposits on the wounds treated with either Gel-HP-NAC or Gel-NAC than untreated wounds. Our results show that modification of NAC-containing hydrogels through methacrylate-containing polymers improved their wound healing properties, including blood-clotting, and demonstrate the potential of Gel-HP-NAC hydrogels for wound treatment and tissue regeneration.
- Published
- 2021
- Full Text
- View/download PDF
18. Smart Nanoformulation Based on Stimuli-Responsive Nanogels and Curcumin: Promising Therapy against Colon Cancer
- Author
-
Johanna Bernáldez-Sarabia, Irasema Oroz-Parra, Fernando Diaz-Castillo, Alexei F. Licea-Navarro, Angel Licea-Claverie, and Lizbeth A. Manzanares-Guevara
- Subjects
Stimuli responsive ,business.industry ,Colorectal cancer ,General Chemical Engineering ,General Chemistry ,medicine.disease ,Article ,chemistry.chemical_compound ,Chemistry ,chemistry ,Curcumin ,Cancer research ,Medicine ,business ,QD1-999 - Abstract
Curcumin (CUR) has gained much attention for its widely reported anticancer effect; however, its clinical use is restricted due to its low water solubility and, consequently, its poor bioavailability. Here, we report on the use of a nanoformulation of CUR with cationic nanogels for colon cancer therapy. Cationic stimuli-sensitive nanogels were prepared using a scale-up polymerization methodology based on surfactant-free emulsion polymerization of N,N′-diethylaminoethyl methacrylate (DEAEM) and poly(ethyleneglycol) methacrylate (PEGMA). The obtained nanogels showed a homogeneous size distribution (from 51 to 162 nm, polydispersity index (PDI) < 0.138) and exhibited a spherical form and core–shell morphology as confirmed by dynamic light scattering and electron microscopy, respectively. Nanogels were responsive to and degradable by variations of pH, temperature, or the redox environment, depending on the cross-linker used in the synthesis. Nanogels cross-linked with bis(acryloyl)cystamine incubated in a buffer (pH 7.4) containing 3 mM glutathione degraded in 60 min, while nanogels cross-linked with a divinylacetal cross-linker degraded in 10 min (pH ≤ 6). Nanoformulations of nanogels with CUR were stable as tested up to 30 days at physiological conditions. In vitro studies of the human colon cancer cell line (HCT-116) showed a synergistic effect of CUR and the degradable nanogels. Further, in vivo acute cytotoxicity tests of empty nanogels in mice demonstrate their potential as CUR nanocarriers for colon-anticancer therapies.
- Published
- 2020
19. Treatment with metformin glycinate reduces SARS-CoV-2 viral load: An in vitro model and randomized, double-blind, Phase IIb clinical trial
- Author
-
Claudia Ventura-López, Karla Cervantes-Luevano, Janet S. Aguirre-Sánchez, Juan C. Flores-Caballero, Carolina Alvarez-Delgado, Johanna Bernaldez-Sarabia, Noemí Sánchez-Campos, Laura A. Lugo-Sánchez, Ileana C. Rodríguez-Vázquez, Jose G. Sander-Padilla, Yulia Romero-Antonio, María M. Arguedas-Núñez, Jorge González-Canudas, and Alexei F. Licea-Navarro
- Subjects
Pharmacology ,SARS-CoV-2 ,Humans ,RNA, Viral ,General Medicine ,Prospective Studies ,Viral Load ,Metformin ,COVID-19 Drug Treatment - Abstract
The health crisis caused by the new coronavirus SARS-CoV-2 highlights the need to identify new treatment strategies for this viral infection. During the past year, over 400 coronavirus disease (COVID-19) treatment patents have been registered; nevertheless, the presence of new virus variants has triggered more severe disease presentations and reduced treatment effectiveness, highlighting the need for new treatment options for the COVID-19. This study evaluates the Metformin Glycinate (MG) effect on the SARS-CoV-2 in vitro and in vivo viral load. The in vitro study was conducted in a model of Vero E6 cells, while the in vivo study was an adaptive, two-armed, randomized, prospective, longitudinal, double-blind, multicentric, and phase IIb clinical trial. Our in vitro results revealed that MG effectively inhibits viral replication after 48 h of exposure to the drug, with no cytotoxic effect in doses up to 100 µM. The effect of the MG was also tested against three variants of interest (alpha, delta, and epsilon), showing increased survival rates in cells treated with MG. These results are aligned with our clinical data, which indicates that MG treatment reduces SARS-CoV2-infected patients´ viral load in just 3.3 days and supplementary oxygen requirements compared with the control group. We expect our results can guide efforts to position MG as a therapeutic option for COVID-19 patients.
- Published
- 2022
20. Preparation of Immune and Synthetic VNAR Libraries as Sources of High-Affinity Binders
- Author
-
Jahaziel, Gasperin-Bulbarela, Olivia, Cabanillas-Bernal, Salvador, Dueñas, and Alexei F, Licea-Navarro
- Subjects
Peptide Library ,Sharks ,Animals ,Cell Surface Display Techniques ,Gene Library - Abstract
The shark-derived autonomous variable antibody domains known as VNARs are attractive tools for therapeutic and diagnostic applications due to their favorable properties like small size (approximately 12 kDa), high thermal and chemical stability, and good tissue penetration. Currently, different techniques have been reported to generate VNAR domains against targets of therapeutic interest. Here, we describe methods for the preparation of an immune VNAR library based on bacteriophage display, and for the preparation of a synthetic library of VNAR domains using a modified protocol based on Kunkel mutagenesis. Finally, we describe procedures for in silico maturation of a VNAR using a bioinformatic approach to obtain higher affinity binders.
- Published
- 2022
21. Preparation of Immune and Synthetic VNAR Libraries as Sources of High-Affinity Binders
- Author
-
Jahaziel Gasperin-Bulbarela, Olivia Cabanillas-Bernal, Salvador Dueñas, and Alexei F. Licea-Navarro
- Published
- 2022
- Full Text
- View/download PDF
22. Potential Therapeutic Applications of Synthetic Conotoxin s-cal14.2b, Derived from Californiconus californicus, for Treating Type 2 Diabetes
- Author
-
Leslie M Otero-Sastre, Johanna Bernáldez-Sarabia, Noemi Sánchez-Campos, Janeth Serrano-Bello, Pavel H. Lugo-Fabres, Saé Muñiz-Hernández, Linda Nuñez-Garcia, David E. García, Alexei F. Licea-Navarro, Tanya A. Camacho-Villegas, Antonio Barajas-Martínez, Isabel Arenas, Luis A. Medina, Lizbeth de la Cruz, and Jorge Gonzalez-Canudas
- Subjects
0301 basic medicine ,Biodistribution ,Californiconus californicus ,QH301-705.5 ,medicine.medical_treatment ,conodrugs ,Medicine (miscellaneous) ,030209 endocrinology & metabolism ,Type 2 diabetes ,Pharmacology ,General Biochemistry, Genetics and Molecular Biology ,conotoxins ,03 medical and health sciences ,0302 clinical medicine ,In vivo ,medicine ,s-cal14.2b ,Conotoxin ,Biology (General) ,Insulinoma ,Ziconotide ,Chemistry ,Insulin ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,type 2 diabetes ,Pancreas ,medicine.drug - Abstract
The FDA’s approval of peptide drugs such as Ziconotide or Exendin for pain relief and diabetes treatment, respectively, enhanced the interest to explore novel conotoxins from Conus species venom. In general, conotoxins can be used in pathologies where voltage-gated channels, membrane receptors, or ligands alter normal physiological functions, as in metabolic diseases such as Type 2 diabetes. In this study, the synthetic cal14.2b (s-cal14.2b) from the unusual Californiconus californicus demonstrated bioactivity on NIT-1 insulinoma cell lines stimulating insulin secretion detecting by high performance liquid chromatography (HPLC). Accordingly, s-cal14.2b increased the CaV1.2/1.3 channel-current by 35 ± 4% with a recovery τ of 10.3 ± 4 s in primary cell culture of rat pancreatic β-cells. The in vivo results indicated a similar effect of insulin secretion on mice in the glucose tolerance curve model by reducing the glucose from 500 mg/dL to 106 mg/dL in 60 min, compared to the negative control of 325 mg/dL at the same time. The PET-SCAN with radiolabeling 99mTc-s-cal14.2b demonstrated biodistribution and accumulation in rat pancreas with complete depuration in 24 h. These findings show the potential therapeutic use of s-cal14.2b in endocrinal pathologies such as early stages of Type 2 Diabetes where the pancreas’s capability to produce insulin is still effective.
- Published
- 2021
- Full Text
- View/download PDF
23. Integrated DNA Extraction Protocol to Avoid PCR-Inhibitors from Fecal and Environmental Samples for Next-Generation Sequencing
- Author
-
Alexei F. Licea-Navarro, Ricardo González-Sánchez, Elena Solana-Arellano, and David Ramírez-Delgado
- Subjects
Protocol (science) ,medicine.medical_specialty ,chemistry.chemical_compound ,Medical microbiology ,chemistry ,medicine ,General Medicine ,Computational biology ,Biology ,DNA extraction ,DNA sequencing ,DNA - Abstract
The use of next-generation sequencing (NGS) techniques is ondemand for many biological applications...
- Published
- 2021
- Full Text
- View/download PDF
24. Detection of Alcanivorax spp., Cycloclasticus spp., and Methanomicrobiales in water column and sediment samples in the Gulf of Mexico by qPCR
- Author
-
Marcial Leonardo Lizárraga-Partida, Johanna Bernáldez-Sarabia, Jahaziel Gasperin, Alexei F. Licea-Navarro, Abraham Guerrero, and Edna L. Hernández-López
- Subjects
Geologic Sediments ,Water mass ,Health, Toxicology and Mutagenesis ,Alcanivoraceae ,Deep sea ,Methanomicrobiales ,03 medical and health sciences ,Water column ,Alkanes ,Environmental Chemistry ,Petroleum Pollution ,Alcanivorax ,Oil-degrading bacteria ,Relative species abundance ,030304 developmental biology ,Gulf of Mexico ,0303 health sciences ,Bacteria ,biology ,030306 microbiology ,Sediment ,General Medicine ,Cycloclasticus ,biology.organism_classification ,Hydrocarbonoclastic bacteria ,Pollution ,Hydrocarbons ,Biodegradation, Environmental ,Petroleum ,Environmental chemistry ,Environmental science ,Water Microbiology ,Petroleum biodegradation ,Southern Gulf of Mexico ,Water Pollutants, Chemical ,Environmental Monitoring ,Research Article - Abstract
Water column and sediment samples were collected in the southern Gulf of Mexico (GoMex) during 3 oceanographic cruises: XIXIMI-04 (September 2015), XIXIMI-05 (June 2016), and XIXIMI-06 (August 2017). DNA that was extracted from the samples was analyzed by qPCR to detect and quantify bacterial groups that have been reported to metabolize alkanes (Alcanivorax) and aromatic hydrocarbons (Cycloclasticus) and are involved in methane production (Methanomicrobiales). The results were then analyzed with regard to the water masses that are currently detected in the GoMex. Generally, we observed a decrease in the proportion of Alcanivorax and a rise in those of Cycloclasticus and Methanomicrobiales in samples from the surface to deep waters and in sediment samples. Scatterplots of the results showed that the relative abundance of the 3 groups was higher primarily from the surface to 1000 m, but the levels of Cycloclasticus and Methanomicrobiales were high in certain water samples below 1000 m and in sediments. In conclusion, oil-degrading bacteria are distributed widely from the surface to deep waters and sediments throughout the southern GoMex, representing a potential inoculum of bacteria for various hydrocarbon fractions that are ready for proliferation and degradation in the event of an oil spill from the seafloor or along the water column.
- Published
- 2019
- Full Text
- View/download PDF
25. Marine peptides as immunomodulators: Californiconus californicus-derived synthetic conotoxins induce IL-10 production by regulatory T cells (CD4+Foxp3+)
- Author
-
Daniela Zazueta-Favela, Alexei F. Licea-Navarro, Galileo Escobedo, Johanna Bernáldez-Sarabia, Julián M. Cota-Arce, Kee W.L. Dan, Marco A. De León-Nava, and Luis Donis-Maturano
- Subjects
0301 basic medicine ,Pharmacology ,Regulatory T cell ,Immunology ,FOXP3 ,chemical and pharmacologic phenomena ,hemic and immune systems ,Context (language use) ,General Medicine ,T lymphocyte ,Biology ,Toxicology ,Cell biology ,03 medical and health sciences ,Interleukin 10 ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,medicine ,Immunology and Allergy ,Conotoxin - Abstract
Context: CD4+ T lymphocytes are able to differentiate into distinct subtypes according to several immunological scenarios, including T helper (Th)1, Th2, Th17 and regulatory T (Treg) cells. CD4+ T cells are phenotypically flexible and have specific ion channels, such as the nicotinic acetylcholine receptors (nAChR) that could be modulated by peptides produced by marine snails, known as conotoxins. Their effect on T lymphocytes has not been explored and emerging evidence suggests that these peptides may have immunomodulatory activities. Objective: This study investigated the effect of two Californiconus californicus-derived synthetic conotoxins on the proliferation and differentiation of T lymphocyte subpopulations Th1, Th2, Th17 and Treg. Methods: Cells from lymph nodes of BALB/c mice were cultured in the presence of conotoxins cal14.1b and cal14.2c (5.5 μM), during 96 h. Cell proliferation and intracellular cytokine production (IFN-γ, IL-4, IL-17 and IL-10) were analyzed by flow cytometry. Results and Discussion: cal14.1b and cal14.2c increased intracellular IL-10 production in Treg (CD3+CD4+Foxp3+) cells and decreased intracellular IL-17 production (CD3+CD4+) after 72 h of culture. Conotoxins did not show any effect on T cell proliferation nor Th1/Th2 balance. Conclusion: These results suggest that synthetic conotoxins exert immunomodulatory activity, especially by regulating specific functions on T lymphocytes.
- Published
- 2019
- Full Text
- View/download PDF
26. Evaluation of antimycobacterial activity from marine and freshwater microalgae
- Author
-
Alexei F. Licea-Navarro, M. del Pilar Sánchez-Saavedra, and Duahmet A. Ruiz-Güereca
- Subjects
antimycobacterial activity ,Tuberculosis ,biology ,Traditional medicine ,Chlamydomonas mexicana ,medicine.drug_class ,Chemistry ,microalgae ,Isoniazid ,tetrazolium microplate assay ,Aquatic Science ,crude extract ,Oceanography ,medicine.disease ,biology.organism_classification ,Antimycobacterial ,Isochrysis galbana ,Minimum inhibitory concentration ,Porphyridium cruentum ,medicine ,Rhodomonas ,medicine.drug - Abstract
Tuberculosis is considered one of the most important epidemiological diseases worldwide. The current treatment for tuberculosis is a combination of antituberculosis drugs for at least 9 months. Nowadays, the search for new pharmacological agents for the treatment of tuberculosis is an urgent endeavor. Microalgae produce a wide variety of molecules that possess biological activities of pharmaceutical interest. Therefore, the objective of this work was to evaluate the antimycobacterial activity of hexane crude extracts of 6 microalgae: Chlamydomonas mexicana, Porphyridium cruentum, Isochrysis galbana, Rhodomonas sp., Aphanocapsa marina, and Nitzschia palea. All of the hexane extracts inhibited at least 90% of the growth of Mycobacterium tuberculosis H37Rv at a concentration of 100 μg ml-1. The hexane crude extract of I. galbana had the highest antimycobacterial activity displaying a percentage inhibition that was equal to that of the antituberculosis drug isoniazid and having a minimum inhibitory concentration of 50 μg ml-1. These findings demonstrate that microalgae are an excellent source for the search of novel antimycobacterial compounds.
- Published
- 2019
- Full Text
- View/download PDF
27. Distribution of pathogenic vibrios and Vibrio spp. in the water column and sediment samples from the southern Gulf of Mexico
- Author
-
Edna Sánchez-Castrejón, Edna L. Hernández-López, Marcial Leonardo Lizárraga-Partida, Jahaziel Gasperin-Bulbarela, Alexei F. Licea-Navarro, Andrea Franco-Moreno, Abraham Guerrero, and Johanna Bernáldez-Sarabia
- Subjects
Water mass ,Gulf of Mexico ,biology ,Sediment ,Water ,Aquatic Science ,Oceanography ,biology.organism_classification ,Pollution ,Pathogenic vibrio ,Vibrio ,Deep water ,Genus Vibrio ,Water column ,Metagenomics ,Environmental science ,Vibrio parahaemolyticus ,Vibrio cholerae - Abstract
This study quantified the distribution of Vibrio spp. by qPCR and pathogenic vibrio species by metagenomics, during 2 oceanographic cruises—XIXIMI-04 and XIXIMI-05 —in the southern Gulf of Mexico (GoMex). A total of 708 samples from various levels of the water column and 22 sediment samples were analyzed, according to a designed net of sampling lines. Sampling was focused on reported water masses with distinctive characteristics, to detect the presence-absence of vibrios. The results indicated that the genus Vibrio was detected along the entire water column and in sediments. Pathogenic vibrios, such as V, campbellii, V. parahaemolyticus, V. vulnificus or V. cholerae were also detected in the water column and in sediments, in both oceanographic cruises. Thus, the ecological conditions of the GoMex permit the growth of Vibrio spp. in deep water environments of the GoMex, despite continuous oil input from natural and anthropogenic sources.
- Published
- 2021
28. Neutralizing antibodies levels are increased in individuals with heterologous vaccination and hybrid immunity with Ad5-nCoV in the north of Mexico
- Author
-
Karla Cervantes-Luevano, Astrid N. Espino-Vazquez, Gonzalo Flores-Acosta, Johanna Bernaldez-Sarabia, Olivia Cabanillas-Bernal, Jahaziel Gasperin-Bulbarela, Ricardo Gonzalez-Sanchez, Andreu Comas-Garcia, and Alexei F. Licea-Navarro
- Subjects
Multidisciplinary ,SARS-CoV-2 ,Spike Glycoprotein, Coronavirus ,Vaccination ,Immunization, Secondary ,COVID-19 ,Humans ,RNA, Viral ,Viral Vaccines ,Antibodies, Viral ,Antibodies, Neutralizing ,Mexico - Abstract
The coordinated efforts to stop the spread of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV2) include massive immunization of the population at a global scale. The humoral immunity against COVID-19 is conferred by neutralizing antibodies (NAbs) that occur during the post-infection period and upon vaccination. Here, we provide robust data showing that potent neutralizing antibodies are induced in convalescent patients of SARS-CoV-2 infection who have been immunized with different types of vaccines, and patients with no previous history of COVID-19 immunized with a mixed vaccination schedule regardless of the previous infection. More importantly, we showed that a heterologous prime-boost in individuals with Ad5-nCoV (Cansino) vaccine induces higher NAbs levels in comparison to a single vaccination scheme alone.
- Published
- 2022
- Full Text
- View/download PDF
29. TIE2 Induces Breast Cancer Cell Dormancy and Inhibits the Development of Osteolytic Bone Metastases
- Author
-
Felipe Olvera-Rodriguez, Alexei F. Licea-Navarro, Florian Drescher, Pierrick G.J. Fournier, Patricia Juárez, Nicolás Serafín-Higuera, Danna L. Arellano, and Samanta Jiménez
- Subjects
Cancer Research ,chemotherapy resistance ,dormancy ,lcsh:RC254-282 ,Article ,Receptor tyrosine kinase ,breast cancer ,In vivo ,medicine ,cancer relapse ,bone metastasis ,biology ,Cell growth ,business.industry ,Bone metastasis ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Haematopoiesis ,TIE2 ,Oncology ,embryonic structures ,Cancer research ,biology.protein ,cardiovascular system ,Dormancy ,CDKN1B ,sense organs ,Stem cell ,business - Abstract
Breast cancer (BCa) cells disseminating to the bone can remain dormant and resistant to treatments for many years until relapsing as bone metastases. The tyrosine kinase receptor TIE2 induces the dormancy of hematopoietic stem cells, and could also induce the dormancy of BCa cells. However, TIE2 is also a target for anti-angiogenic treatments in ongoing clinical trials, and its inhibition could then restart the proliferation of dormant BCa cells in bone. In this study, we used a combination of patient data, in vitro, and in vivo models to investigate the effect of TIE2 in the dormancy of bone metastases. In BCa patients, we found that a higher TIE2 expression is associated with an increased time to metastases and survival. In vitro, TIE2 decreased cell proliferation as it increased the expression of cyclin-dependent kinase inhibitors CDKN1A and CDKN1B and arrested cells in the G0/G1 phase. Expression of TIE2 also increased the resistance to the chemotherapeutic 5-Fluorouracil. In mice, TIE2 expression reduced tumor growth and the formation of osteolytic bone metastasis. Together, these results show that TIE2 is sufficient to induce dormancy in vitro and in vivo, and could be a useful prognostic marker for patients. Our data also suggest being cautious when using TIE2 inhibitors in the clinic, as they could awaken dormant disseminated tumor cells.
- Published
- 2020
- Full Text
- View/download PDF
30. Author Correction: Analysis of sequencing strategies and tools for taxonomic annotation: Defining standards for progressive metagenomics
- Author
-
Elizabeth Ernestina Godoy-Lozano, Luciana Raggi, Liliana Pardo-López, Lorenzo Segovia, Rosa María Gutiérrez-Ríos, Alexei F. Licea-Navarro, Alejandra Escobar-Zepeda, Alejandro Sanchez-Flores, Enrique Merino, and Katy Juárez
- Subjects
Multidisciplinary ,Base Sequence ,Computer science ,Published Erratum ,lcsh:R ,MEDLINE ,Computational Biology ,lcsh:Medicine ,Molecular Sequence Annotation ,Sequence Analysis, DNA ,Computational biology ,Annotation ,Metagenomics ,RNA, Ribosomal, 16S ,Databases, Genetic ,Metagenome ,lcsh:Q ,Leptospira interrogans ,Author Correction ,lcsh:Science ,Algorithms ,Software - Abstract
Metagenomics research has recently thrived due to DNA sequencing technologies improvement, driving the emergence of new analysis tools and the growth of taxonomic databases. However, there is no all-purpose strategy that can guarantee the best result for a given project and there are several combinations of software, parameters and databases that can be tested. Therefore, we performed an impartial comparison, using statistical measures of classification for eight bioinformatic tools and four taxonomic databases, defining a benchmark framework to evaluate each tool in a standardized context. Using in silico simulated data for 16S rRNA amplicons and whole metagenome shotgun data, we compared the results from different software and database combinations to detect biases related to algorithms or database annotation. Using our benchmark framework, researchers can define cut-off values to evaluate the expected error rate and coverage for their results, regardless the score used by each software. A quick guide to select the best tool, all datasets and scripts to reproduce our results and benchmark any new method are available at https://github.com/Ales-ibt/Metagenomic-benchmark . Finally, we stress out the importance of gold standards, database curation and manual inspection of taxonomic profiling results, for a better and more accurate microbial diversity description.
- Published
- 2020
- Full Text
- View/download PDF
31. Venom components of the scorpion Centruroides limpidus modulate cytokine expression by T helper lymphocytes: Identification of ion channel-related toxins by mass spectrometry
- Author
-
Nadia L. Caram-Salas, Lourival D. Possani, Marco A. De León-Nava, Alexei F. Licea-Navarro, Johanna Bernáldez-Sarabia, Daniela Zazueta-Favela, Kee W.L. Dan, Julián M. Cota-Arce, Galileo Escobedo, Samanta Jiménez, and Fernando Diaz-Castillo
- Subjects
0301 basic medicine ,Male ,medicine.medical_treatment ,T cell ,Immunology ,Scorpion Venoms ,Venom ,Scorpions ,03 medical and health sciences ,0302 clinical medicine ,Tandem Mass Spectrometry ,medicine ,Immunology and Allergy ,Animals ,Secretion ,Ion channel ,Cells, Cultured ,Cell Proliferation ,Pharmacology ,Mice, Inbred BALB C ,Chemistry ,Effector ,T helper cell ,T lymphocyte ,T-Lymphocytes, Helper-Inducer ,030104 developmental biology ,medicine.anatomical_structure ,Cytokine ,Biochemistry ,030220 oncology & carcinogenesis ,Cytokines ,Chromatography, Liquid - Abstract
The study of the effector mechanisms of T helper cells has revealed different phenotypic characteristics that can be manipulated for designing new therapeutic schemes in different pathological scenarios. Ion channels are significant targets in T lymphocyte modulation since they are closely related to their effector activity. Remarkably, some toxins produced by scorpions specifically affect the function of these membrane proteins. For that reason, these toxins are important candidates in the search for new immunomodulators. Here, the effect of two venom fractions of the scorpion Centruroides limpidus was assessed on T lymphocyte proliferation and cytokine production. The venom fractions ClF8 and ClF9 were separated by reversed-phase high-performance liquid chromatography (RP-HPLC) and cultured at 25 and 35 µg/ml with murine T lymphocytes. The results indicate that the fraction ClF8 increased both production and secretion levels of IFN-γ, IL-4, IL-17A and IL-10 by CD4+ T cells at 24 h. In contrast, fraction ClF9 only promoted the secretion of IL-17A and IL-10 at its highest concentration (35 µg/ml). Both fractions did not show any effect on T cell proliferation. Subsequent analyses by liquid chromatography-tandem mass spectrometry (LC-MS/MS) revealed seventeen toxins in the fraction ClF8 and five toxins in the fraction ClF9, most of them with voltage-gated sodium (NaScTx) and potassium (KScTx) channels as molecular targets. These toxins might probably interact with ion channels involved in T lymphocyte activity. Our findings suggest that the difference in composition between the two fractions could be related to the observed effects, and the components identified could be isolated to search for possible immunomodulatory molecules.
- Published
- 2020
32. Characterization of Enterobacter cloacae BAGM01 Producing a Thermostable and Alkaline-Tolerant Rhamnolipid Biosurfactant from the Gulf of Mexico
- Author
-
A. Berenice Aguilar-Guadarrama, María R. Trejo-Hernández, Nashbly Sarela Rosas-Galván, Nancy Rivera-Gómez, Fernando Martínez-Morales, Brandt Bertrand, Daniel Morales-Guzmán, Rosa María Gutiérrez-Ríos, Nidya Fabiola Curiel-Maciel, and Alexei F. Licea-Navarro
- Subjects
0106 biological sciences ,0301 basic medicine ,Salinity ,Microorganism ,Microbial Consortia ,01 natural sciences ,Applied Microbiology and Biotechnology ,Cultivable bacteria ,03 medical and health sciences ,chemistry.chemical_compound ,Surface-Active Agents ,010608 biotechnology ,Enterobacter cloacae ,Food science ,Gulf of Mexico ,biology ,Strain (chemistry) ,Bacteria ,Rhamnolipid ,biology.organism_classification ,030104 developmental biology ,chemistry ,Metagenomics ,Glycolipids - Abstract
The search for novel biosurfactants (Bs) requires the isolation of microorganisms from different environments. The Gulf of Mexico (GoM) is a geographical area active in the exploration and exploitation of hydrocarbons. Recent metagenomic and microbiologic studies in this area suggested a potential richness for novel Bs microbial producers. In this work, nineteen bacterial consortia from the GoM were isolated at different depths of the water column and marine sediments. Bs production from four bacterial consortia was detected by the CTAB test and their capacity to reduce surface tension (ST), emulsion index (EI24), and hemolytic activity. These bacterial consortia produced Bs in media supplemented with kerosene, diesel, or sucrose. Cultivable bacteria from these consortia were isolated and identified by bacterial polyphasic characterization. In some consortia, Enterobacter cloacae was the predominant specie. E. cloacae BAGM01 presented Bs activity in minimal medium and was selected to improve its Bs production using a Taguchi and Box-Behnken experimental design; this strain was able to grow and presented Bs activity at 35 g L−1 of NaCl. This Bs decreased ST to around 34.5 ± 0.56 mNm−1 and presented an EI24 of 71 ± 1.27%. Other properties of this Bs were thermal stability, stability in alkaline conditions, and stability at high salinity, conferring important and desirable characteristics in multiple industries. The analysis of the genome of E. cloacae BAGM01 showed the presence of rhlAB genes that have been reported in the synthesis of rhamnolipids, and alkAB genes that are related to the degradation of alkanes. The bioactive molecule was identified as a rhamnolipid after HPLC derivatization, 1H NMR, and UPLC-QTOF-MS analysis.
- Published
- 2020
33. On the cytotoxicity of a cationic tertiary amine PEGylated nanogel as nanocarrier for anticancer therapies
- Author
-
Alexei F. Licea-Navarro, Lizbeth A. Manzanares-Guevara, Angel Licea-Claverie, and Irasema Oroz-Parra
- Subjects
Materials science ,Tertiary amine ,technology, industry, and agriculture ,Cationic polymerization ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Methacrylate ,01 natural sciences ,0104 chemical sciences ,Colloidal gold ,PEG ratio ,General Materials Science ,Nanocarriers ,0210 nano-technology ,Cytotoxicity ,Nanogel ,Nuclear chemistry - Abstract
Cationic PEGylated nanogels based on poly(N,N-diethylaminoethyl methacrylate) (PDEAEM) were prepared varying the ratio of PDEAEM to polyethyleneglycol (PEG), the initiator, and the crosslinker; resulting in nanogels of different surface charge (zeta-potential) and hydrodynamic diameter. Nanogels without PEG (100% PDEAEM) and nanogels containing 45 wt.% of PDEAEM were cytotoxic to human colon cancer cell line (HCT-116). Nanogels containing 20 wt.% or less of PDEAEM provided with a PEG shell were non-cytotoxic even at a concentration of 1 mg/mL. These nanogels loaded with 5-fluorouracil turned to be cytotoxic provoking cell death by apoptosis. Nanogels were also studied loaded with gold nanoparticles.
- Published
- 2018
- Full Text
- View/download PDF
34. In silico-designed mutations increase variable new-antigen receptor single-domain antibodies for VEGF165 neutralization
- Author
-
Pierrick G.J. Fournier, Robert M. Hoffman, Patricia L A Muñoz, Dalia Millán-Gómez, Jorge Gonzalez-Canudas, Olivia Cabanillas-Bernal, Marco A Ramos, Alexei F. Licea-Navarro, David Abia, Teresa Escalante, Noemi Sánchez-Campos, Salvador Dueñas, Almudena Perona, Carolina Elosua, Rosa E. Mares, Tanya A. Camacho-Villegas, Jorge F. Paniagua-Solís, Florian Drescher, and Teresa Mata-Gonzalez
- Subjects
0301 basic medicine ,Angiogenesis ,In silico ,Mutant ,VNAR ,medicine.disease_cause ,Oncología ,03 medical and health sciences ,VEGF neutralization ,angiogenesis ,0302 clinical medicine ,Medicina preventiva ,In vivo ,shark antibody ,medicine ,Receptor ,in silico mutation ,Mutation ,Biología molecular ,biology ,Chemistry ,Cáncer ,In vitro ,Cell biology ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,biology.protein ,Antibody ,Research Paper - Abstract
The stability, binding, and tissue penetration of variable new-antigen receptor (VNAR) single-domain antibodies have been tested as part of an investigation into their ability to serve as novel therapeutics. V13 is a VNAR that recognizes vascular endothelial growth factor 165 (VEGF165). In the present study V13 was used as a parental molecule into which we introduced mutations designed in silico. Two of the designed VNAR mutants were expressed, and their ability to recognize VEGF165 was assessed in vitro and in vivo. One mutation (Pro98Tyr) was designed to increase VEGF165 recognition, while the other (Arg97Ala) was designed to inhibit VEGF165 binding. Compared to parental V13, the Pro98Tyr mutant showed enhanced VEGF165 recognition and neutralization, as indicated by inhibition of angiogenesis and tumor growth. This molecule thus appears to have therapeutic potential for neutralizing VEGF165 in cancer treatment. Sin financiación No data JCR 2018 1.575 SJR (2018) Q1, 71/381 Oncology No data IDR 2018 UEM
- Published
- 2018
35. Complete genome sequence of a phage hyperparasite of Candidatus Xenohaliotis californiensis (Rickettsiales) – a pathogen of Haliotis spp (Gasteropoda)
- Author
-
Alexei F. Licea-Navarro, Ricardo Gonzales-Sánchez, Abraham Guerrero, Jorge Cáceres-Martínez, Miguel Ángel Del Río-Portilla, and Roberto Cruz-Flores
- Subjects
0301 basic medicine ,Haliotis rufescens ,Gastropoda ,030106 microbiology ,Gene Expression ,Genome, Viral ,Genome ,Open Reading Frames ,03 medical and health sciences ,Virology ,Animals ,Bacteriophages ,ORFS ,RNA, Double-Stranded ,Whole genome sequencing ,Genetics ,Hyperparasite ,Whole Genome Sequencing ,biology ,Nucleotide transport ,Chromosome Mapping ,Haliotis corrugata ,General Medicine ,biology.organism_classification ,Anaplasmataceae ,030104 developmental biology ,Biological Control Agents ,RNA, Viral ,Rickettsiales - Abstract
Bacteriophages are recognized as major mortality agents of microbes, among them intracellular marine rickettsiales-like bacteria. Recently, a phage hyperparasite of Candidatus Xenohaliotis californiensis (CXc) has been described. This bacterium is considered the causal agent of Withering Syndrome (WS) which is a chronic and potentially lethal disease of abalone species from California, USA and the peninsula of Baja California, Mexico. This hyperparasite which infects CXc could be used as a biocontrol agent for WS. Therefore, it is necessary to obtain genomic information to characterize this phage. In this study, the first complete genome sequence of a novel phage, Xenohaliotis phage (pCXc) was determined. The complete genome of pCXc from red abalone (Haliotis rufescens) is 35,728 bp, while the complete genome of pCXc from yellow abalone (Haliotis corrugata) is 35,736 bp. Both phage genomes consist of double-stranded DNA with a G + C content of 38.9%. In both genomes 33 open reading frames (ORFs) were predicted. Only 10 ORFs encode proteins that have identifiable functional homologues. These 10 ORFs were classified by function, including structural, DNA replication, DNA packaging, nucleotide transport and metabolism, life cycle regulation, recombination and repair, and additional functions. A PCR method for the specific detection of pCXc was developed. This information will help to understand a new group of phages that infect intracellular marine rickettsiales-like bacteria in mollusks.
- Published
- 2018
- Full Text
- View/download PDF
36. Molecular Analysis of Streptomycin Resistance Genes in Clinical Strains of Mycobacterium tuberculosis and Biocomputational Analysis of the MtGidB L101F Variant
- Author
-
Alexei F. Licea-Navarro, Samuel G. Meléndez-López, Samuel Ruvalcaba-Ruiz, Álvaro Rodríguez-García, Marco A. Ramos-Ibarra, Patricia L A Muñoz-Muñoz, Ricardo González-Sánchez, Johanna Bernáldez-Sarabia, and Rosa E. Mares-Alejandre
- Subjects
0301 basic medicine ,Microbiology (medical) ,Tuberculosis ,clinical isolates ,medicine.drug_class ,030106 microbiology ,Antibiotics ,RM1-950 ,Biology ,Biochemistry ,Microbiology ,Genetic analysis ,Mycobacterium tuberculosis ,03 medical and health sciences ,medicine ,molecular analysis ,Pharmacology (medical) ,General Pharmacology, Toxicology and Pharmaceutics ,biocomputational analysis ,Gene ,Strain (biology) ,medicine.disease ,biology.organism_classification ,Virology ,030104 developmental biology ,Infectious Diseases ,streptomycin resistance ,Streptomycin ,Infectious disease (medical specialty) ,Therapeutics. Pharmacology ,medicine.drug - Abstract
Globally, tuberculosis (TB) remains a prevalent threat to public health. In 2019, TB affected 10 million people and caused 1.4 million deaths. The major challenge for controlling this infectious disease is the emergence and spread of drug-resistant Mycobacterium tuberculosis, the causative agent of TB. The antibiotic streptomycin is not a current first-line anti-TB drug. However, WHO recommends its use in patients infected with a streptomycin-sensitive strain. Several mutations in the M. tuberculosisrpsL, rrs and gidB genes have proved association with streptomycin resistance. In this study, we performed a molecular analysis of these genes in clinical isolates to determine the prevalence of known or novel mutations. Here, we describe the genetic analysis outcome. Furthermore, a biocomputational analysis of the MtGidB L101F variant, the product of a novel mutation detected in gidB during molecular analysis, is also reported as a theoretical approach to study the apparent genotype-phenotype association.
- Published
- 2021
- Full Text
- View/download PDF
37. Temperature- and pH-sensitive core–shell nanogels as efficient carriers of doxorubicin with potential application in lung cancer treatment
- Author
-
Victor E. Gomez-Resendiz, Aracely Serrano-Medina, Alexei F. Licea-Navarro, José Manuel Cornejo-Bravo, Angel Licea-Claverie, and Irasema Oroz-Parra
- Subjects
Materials science ,Polymers and Plastics ,General Chemical Engineering ,Emulsion polymerization ,Ether ,macromolecular substances ,02 engineering and technology ,010402 general chemistry ,Methacrylate ,01 natural sciences ,Analytical Chemistry ,Core shell ,chemistry.chemical_compound ,Polymer chemistry ,medicine ,Doxorubicin ,Cytotoxicity ,Benzoic acid ,technology, industry, and agriculture ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,chemistry ,0210 nano-technology ,Ethylene glycol ,Nuclear chemistry ,medicine.drug - Abstract
Temperature- and pH-sensitive core–shell nanogels were prepared by one-pot soapless emulsion polymerization of N-isopropylacrylamide and 2-methacryloyloxy benzoic acid with the aid of a crosslinker (core) using poly(ethylene glycol) methyl ether methacrylate as stabilizer (shell). The size of nanogels depended on the crosslinker used, being considerable smaller (around 100 nm) with the use of the acid-labile crosslinker 9-divinyl-2,4,8,10-tetraoxaspiro[5.5]-undecane (DVA). Doxorubicine (DOX) was loaded in nanogels with good efficiency. The empty nanogels were biocompatible for a lung cancer cell line (NCI-H1437), while the DOX-loaded, DVA-crosslinked nanogels resulted with efficient cytotoxicity for that cell line.
- Published
- 2017
- Full Text
- View/download PDF
38. Microbial prospection of communities that produce biosurfactants from the water column and sediments of the Gulf of Mexico
- Author
-
Nidya Fabiola Curiel-Maciel, Luis Enrique Mazón-Román, Daniel Morales-Guzmán, Nashbly Sarela Rosas-Galván, Brandt Bertrand, Alexei F. Licea-Navarro, María R. Trejo-Hernández, Karla Verónica Teymennet-Ramírez, and Fernando Martínez-Morales
- Subjects
0106 biological sciences ,Geologic Sediments ,Microbacterium ,Biomedical Engineering ,Bioengineering ,Gram-Positive Bacteria ,01 natural sciences ,Applied Microbiology and Biotechnology ,Shewanella ,03 medical and health sciences ,Surface-Active Agents ,Marine bacteriophage ,Pseudoalteromonas ,010608 biotechnology ,Drug Discovery ,Gammaproteobacteria ,Gram-Negative Bacteria ,Food science ,030304 developmental biology ,0303 health sciences ,Gulf of Mexico ,biology ,Chemistry ,Process Chemistry and Technology ,Pseudomonas ,food and beverages ,Water ,General Medicine ,Enterobacter ,biology.organism_classification ,Photobacterium ,Molecular Medicine ,Emulsions ,Biotechnology - Abstract
Microbial communities capable of hydrocarbon degradation linked to biosurfactant (BS) and bioemulsifier (BE) production are basically unexplored in the Gulf of Mexico (GOM). In this work, the BS and BE production of culturable marine bacterial hydrocarbonoclasts consortia isolated from two sites (the Perdido Fold Belt and Coatzacoalcos area) was investigated. The prospection at different locations and depths led to the screening and isolation of a wide variety of bacterial consortia with BS and BE activities, after culture enrichment with crude oil and glycerol as the carbon sources. At least 55 isolated consortia presented reduction in surface tension (ST) and emulsifying activity (EI24 ). After colony purification, bacteria were submitted to polyphasic analysis assays that resulted in the identification of different strains of cultivable Gammaproteobacteria Gram (-) Citrobacter, Enterobacter, Erwinia, Pseudomonas, Vibrio, Shewanella, Thalassospira, Idiomarina, Pseudoalteromonas, Photobacterium, and Gram (+) Staphylococcus, Bacillus, and Microbacterium. Overall, the best results for ST reduction and EI24 were obtained with consortia. Individually, Pseudomonas, Bacillus, and Enterobacter strains showed the best results for the reduction of ST after 6 days, while Thalassospira and Idiomarina strains showed the best results for EI24 (above 68% after 9 days). Consortia isolates from the GOM had the ability to degrade crude oil by up to 40-80% after 24 and 36 months, respectively. In all cases, biodegradation of crude oil was related to the reduction in ST and bioemulsifying activity and was independent from the depth in the water column.
- Published
- 2019
39. Proapoptotic Index Evaluation of Two Synthetic Peptides Derived from the Coneshell
- Author
-
Irasema, Oroz-Parra, Carolina, Álvarez-Delgado, Karla, Cervantes-Luevano, Salvador, Dueñas-Espinoza, and Alexei F, Licea-Navarro
- Subjects
Caspase 7 ,Lung Neoplasms ,Caspase 3 ,Cell Survival ,Carcinoma ,Conus Snail ,apoptosis ,Article ,conotoxins ,lung cancer ,Proto-Oncogene Proteins c-bcl-2 ,caspases ,Cell Line, Tumor ,Bax/Bcl-2 ratio ,Animals ,Humans ,Peptides ,structure alignment - Abstract
Lung cancer is one of the most common types of cancer, accounting for approximately 15% of all cancer cases worldwide. Apoptosis is the dominant defense mechanism against tumor development. The balance between pro- and antiapoptotic members of the Bcl-2 protein family can determine cellular fate. The venom of predatory marine snails Conus is estimated to have 100–400 toxins called conotoxins. The family of α-conotoxins is known to consist of selective antagonists of nicotinic acetylcholine receptors (nAChRs). Lung cancer cells overexpress several subunits of nAChRs and are considered as an excellent target for new anticancer drugs. We compared the cytotoxic effect of two synthetic peptides derived from Californiconus californicus, Cal14.1a, and Cal14.1b, which only differ by one amino acid in their sequence, and compared their proapoptotic balance by Bax and Bcl-2 mRNA expression. We determined the caspase-3 and -7 activation to demonstrate apoptosis induction. Results showed that Cal14.1a induces a high Bax/Bcl-2 ratio in H1299 (lung cancer cells). Although Cal14.1b has a cytotoxic effect on H1299 cells, reducing cell viability by 30%, it does not increase the Bax/Bcl-2 ratio, which could be explained by the Glu in the 15th residue, which is crucial for the ability of Cal14.1a to induce apoptosis.
- Published
- 2019
40. Surface Modification of Polyester-Fabric with Hydrogels and Silver Nanoparticles: Photochemical Versus Gamma Irradiation Methods
- Author
-
Angel Licea-Claverie, Sergio Pérez-Sicairos, Johanna Bernáldez-Sarabia, Emilio Bucio, Alejandro Ramírez-Jiménez, Alexei F. Licea-Navarro, and Kathleen Abigail Montoya-Villegas
- Subjects
silver nanoparticles ,Materials science ,02 engineering and technology ,macromolecular substances ,engineering.material ,010402 general chemistry ,Photochemistry ,Methacrylate ,01 natural sciences ,lcsh:Technology ,Article ,Silver nanoparticle ,chemistry.chemical_compound ,Coating ,stomatognathic system ,antibacterial activity ,General Materials Science ,Thermal analysis ,lcsh:Microscopy ,hydrogels ,lcsh:QC120-168.85 ,lcsh:QH201-278.5 ,lcsh:T ,technology, industry, and agriculture ,021001 nanoscience & nanotechnology ,gamma irradiation ,0104 chemical sciences ,Polyester ,graft polymerization ,chemistry ,lcsh:TA1-2040 ,Self-healing hydrogels ,engineering ,Surface modification ,lcsh:Descriptive and experimental mechanics ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,0210 nano-technology ,lcsh:Engineering (General). Civil engineering (General) ,Ethylene glycol ,surface modification ,lcsh:TK1-9971 - Abstract
A Gamma irradiation and photochemical crosslinking/grafting of poly(2-hydroxyethyl methacrylate) (PHEMA) and poly(2-hydroxyethyl methacrylate-co-poly(ethylene glycol) methacrylate) (poly(HEMA-co-PEGMA)) hydrogels onto polyethyleneterephtalate fabric (PET) surfaces were evaluated, in order to obtain a hydrophilic homogeneous coating onto PET fabrics. The materials were characterized by FTIR-ATR, SEM, EDS, and thermal analysis. Furthermore, silver nanoparticles (AgNPs) were loaded by in situ reduction of AgNO3, and its antibacterial activity against Staphylococcus aureus and Escherichia coli was determined. Results showed a ticker coating of hydrogel using gamma radiation and stronger in deep modification of the fibers, however, by the photochemical method, a thin coating with good coverage of PET surface was obtained. The differences in hydrophilicity, thermal properties, and antibacterial activity of the coated fabrics by using both methods were rather small.
- Published
- 2019
41. Identification of a pore-forming protein from sea anemone Anthopleura dowii Verrill (1869) venom by mass spectrometry
- Author
-
Alexei F. Licea-Navarro, Gustavo Pedraza-Alva, Sandra I Salazar-García, Santos Ramírez-Carreto, Leonor Pérez-Martínez, Claudia Rodríguez-Almazán, Erick I. Pérez-García, Johanna Bernáldez-Sarabia, and Enrique Rudiño-Piñera
- Subjects
0301 basic medicine ,lcsh:Arctic medicine. Tropical medicine ,lcsh:RC955-962 ,sea anemone ,030231 tropical medicine ,Venom ,Toxicology ,Pore forming protein ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,lcsh:RA1190-1270 ,Lactate dehydrogenase ,lcsh:Zoology ,medicine ,lcsh:QL1-991 ,Cytotoxicity ,Ammonium sulfate precipitation ,lcsh:Toxicology. Poisons ,030102 biochemistry & molecular biology ,Molecular mass ,Research ,Anthopleura ,medicine.disease ,Molecular biology ,Hemolysis ,Infectious Diseases ,chemistry ,pore-forming protein ,Animal Science and Zoology ,Parasitology ,Trypan blue ,lung carcinoma - Abstract
Background: Pore-forming proteins (PFP) are a class of toxins abundant in the venom of sea anemones. Owing to their ability to recognize and permeabilize cell membranes, pore-forming proteins have medical potential in cancer therapy or as biosensors. In the present study, we showed the partial purification and sequencing of a pore-forming protein from Anthopleura dowii Verrill (1869). 17. Methods: Cytolytic activity of A. dowii Verrill (1869) venom was determined via hemolysis assay in the erythrocytes of four mammals (sheep, goat, human and rabbit). The cytotoxic activity was analyzed in the human adherent lung carcinoma epithelial cells (A549) by the cytosolic lactate dehydrogenase (LDH) assay, and trypan blue staining. The venom was fractionated via ammonium sulfate precipitation gradient, dialysis, and ion exchange chromatography. The presence of a pore-forming protein in purified fractions was evaluated through hemolytic and cytotoxic assays, and the activity fraction was analyzed using the percent of osmotic protections after polyethylene glycol (PEG) treatment and mass spectrometry. 18. Results: The amount of protein at which the venom produced 50% hemolysis (HU50) was determined in hemolysis assays using erythrocytes from sheep (HU50 = 10.7 ± 0.2 μg), goat (HU50 = 13.2 ± 0.3 μg), rabbit (HU50 = 34.7 ± 0.5 μg), and human (HU50 = 25.6 ± 0.6 μg). The venom presented a cytotoxic effect in A549 cells and the protein amount present in the venom responsible for producing 50% death (IC50) was determined using a trypan blue cytotoxicity assay (1.84 ± 0.40 μg/mL). The loss of membrane integrity in the A549 cells caused by the venom was detected by the release of LDH in proportion to the amount of protein. The venom was fractionated; and the fraction with hemolytic and cytotoxic activities was analyzed by mass spectrometry. A pore-forming protein was identified. The cytotoxicity in the A549 cells produced by the fraction containing the pore-forming protein was osmotically protected by PEG-3350 Da molecular mass, which corroborated that the loss of integrity in the plasma membrane was produced via pore formation. 19. Conclusion: A. dowii Verrill (1869) venom contains a pore-forming protein suitable for designing new drugs for cancer therapy.
- Published
- 2019
42. Stimuli responsive nanogels with intrinsic fluorescence: Promising nanovehicles for controlled drug delivery and cell internalization detection in diverse cancer cell lines
- Author
-
Johanna Bernáldez-Sarabia, Angel Licea-Claverie, Alexei F. Licea-Navarro, Alejandra Gonzalez-Urias, Lizbeth A. Manzanares-Guevara, Iván Zapata-González, and Adrián Ochoa-Terán
- Subjects
Polymers and Plastics ,Chemistry ,media_common.quotation_subject ,Organic Chemistry ,General Physics and Astronomy ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Fluorescence ,0104 chemical sciences ,chemistry.chemical_compound ,Drug delivery ,Materials Chemistry ,Fluorescence microscope ,Biophysics ,Nanomedicine ,Fluorescein ,Nanocarriers ,0210 nano-technology ,Internalization ,Nanogel ,media_common - Abstract
Nanogels are an important class of nanomaterials with a wide field of potential applications in nanomedicine. Fluorescent nanogels have the great advantage of the application in theranostics. In this study, intrinsic fluorescent nanogels, crosslinked with fluorescein O,O′-diacrylate (FDA), were synthetized and studied for first time, via a robust methodology of one–pot, resulting in yields in scale of grams. This new type of nanovehicles avoid the susceptibility to leaching, inhomogeneity, or degradation of the fluorescent moieties, observed in others approaches using encapsulation or conjugation of fluorescent molecules, additionally they show multi-stimuli response to temperature and pH. Both anionic (AFN) and cationic fluorescent nanogels (CFN) were successfully produced, which showed strong fluorescence intensity at neutral pH, the fluorescence was quenched at pH 5. Cisplatin (CDDP) and 5-fluorouracil (5-FU) were loaded into the nanogels, leading to partially quenching of the fluorescence. The kinetics of drug release and cell-viability studies are also reported. Cell-internalization studies were performed by fluorescence microscopy in non-small lung adenocarcinoma cell line NCI-H1437 and human colorectal cancer cell line HCT-116; demonstrating that the AFN were not internalized and CFN were easily internalized at concentrations of 100 µg/mL in 5 min, irrespective of the molecular weight of the Poly(ethylenglycol)-chains. The developed method can be expanded to the preparation of other fluorescent nanogel types; whereas the prepared AFN and CFN could be studied as nanocarriers to be internalized in diverse cell-lines.
- Published
- 2021
- Full Text
- View/download PDF
43. Ca-Alginate-PEGMA Hydrogels for In Situ Delivery of TGF-β Neutralizing Antibodies in a Mouse Model of Wound Healing
- Author
-
Raquel Echavarría, Nestor Emmanuel Díaz-Martínez, Tanya A. Camacho-Villegas, Pavel H. Lugo-Fabres, Eduardo Padilla-Camberos, Alexei F. Licea-Navarro, Ana B. Castro-Ceseña, and Jahaziel Gasperin-Bulbarela
- Subjects
TGF-β ,Calcium alginate ,medicine.medical_treatment ,wound healing ,Inflammation ,Pharmacology ,lcsh:Technology ,lcsh:Chemistry ,030207 dermatology & venereal diseases ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,General Materials Science ,lcsh:QH301-705.5 ,Instrumentation ,030304 developmental biology ,Fluid Flow and Transfer Processes ,0303 health sciences ,integumentary system ,lcsh:T ,Process Chemistry and Technology ,General Engineering ,Ca-alginate ,lcsh:QC1-999 ,Computer Science Applications ,Cytokine ,lcsh:Biology (General) ,lcsh:QD1-999 ,chemistry ,lcsh:TA1-2040 ,1D11 ,Self-healing hydrogels ,Drug delivery ,Systemic administration ,hydrogel ,poly(ethylene glycol) methyl ether methacrylate ,medicine.symptom ,lcsh:Engineering (General). Civil engineering (General) ,Wound healing ,Ethylene glycol ,lcsh:Physics - Abstract
Hydrogels provide effective alternatives for drug delivery when therapeutics cannot be applied directly to a wound, or if adverse effects are associated with systemic administration. However, drug delivery vehicles need to be biocompatible and biodegradable and exhibit sufficient mechanical strength to withstand handling and different physiological conditions, such as those encountered during topical administration of a therapeutic. Wound healing can be divided into three phases stimulated by transforming growth factor-beta (TGF-&beta, ) and, subsequently, targeted therapeutics have been developed to inhibit this cytokine for the treatment of chronic wounds and to prevent scarring. In this study, the capacity of calcium alginate hydrogels plasticized with poly(ethylene glycol) methyl ether methacrylate (PEGMA) to deliver anti-TGF-&beta, antibodies (1D11.16.8) to a wound was investigated in situ. Three levels of antibodies, 10, 50, and 100 &mu, g, were loaded into calcium-alginate-PEGMA hydrogels and evaluated in an excisional wound model in mice. Hydrogels containing 50 and 100 &mu, g 1D11.16.8 produced less inflammation, accompanied by a marked reduction in collagen deposition and cell infiltration. These findings demonstrate the capacity of calcium-alginate-PEGMA hydrogels to deliver larger proteins, such as antibodies, to the site of a wound.
- Published
- 2021
- Full Text
- View/download PDF
44. Effect of starch on the mechanical and in vitro properties of collagen-hydroxyapatite sponges for applications in dentistry
- Author
-
Tanya A. Camacho-Villegas, Ekaterina Novitskaya, Joanna McKittrick, Pavel H. Lugo-Fabres, Alexei F. Licea-Navarro, and Ana B. Castro-Ceseña
- Subjects
Polymers and Plastics ,Starch ,Nanotechnology ,02 engineering and technology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Elastic Modulus ,Materials Chemistry ,Humans ,Viability assay ,Elastic modulus ,biology ,Blood clotting ,Chemistry ,Organic Chemistry ,030206 dentistry ,021001 nanoscience & nanotechnology ,biology.organism_classification ,Microstructure ,In vitro ,Sponge ,Durapatite ,Chemical engineering ,Dentistry ,Starch granule ,0210 nano-technology - Abstract
This study sought to improve the mechanical and blood-absorbing properties of collagen sponges, while keeping them compressible, by incorporating blended hydroxyapatite (HA)-starch. Results were compared with CollaPlug(®) (pure collagen). The elastic modulus increased from 1.5±0.2kPa for CollaPlug(®) to 49±8kPa for sponges with composition 1:4:10 (collagen:HA:starch, by weight). The modified microstructure and surface area provided by the starch granules on the sponges improved cell viability. Sponges with composition 1:4:10 maintained their blood-clotting capability with almost no change from 5 to 15min after contact with blood, while CollaPlug(®) diminished to about half its capacity to absorb blood and form clots. Incorporation of HA-starch into the sponges with composition of 1:4:10, increased the elastic modulus of the collagen-HA sponges, making them more structurally robust. The viability of cells and the blood-clotting capability increased with starch incorporation.
- Published
- 2016
- Full Text
- View/download PDF
45. Decreasing of bacterial content in Isochrysis galbana cultures by using some antibiotics
- Author
-
Alexei F. Licea-Navarro, Ceres A. Molina-Cárdenas, and M. del Pilar Sánchez-Saavedra
- Subjects
0301 basic medicine ,03 medical and health sciences ,030104 developmental biology ,biology ,Chemistry ,Aquatic Science ,Oceanography ,biology.organism_classification ,Molecular biology ,Isochrysis galbana - Abstract
La obtencion de cultivos axenicos es una tarea laboriosa y resultan dificiles de mantener. Los cultivos de microalgas con carga bacteriana reducida pueden ser una alternativa a los cultivos axenicos de microalgas para producir compuestos con potencial biotecnologico y farmaceutico. Tambien estos pueden ser usados para la criopreservacion, y en estudios bioquimicos, fisiologicos, ecologicos y geneticos. El proposito de este estudio fue desarrollar un protocolo para reducir la carga bacteriana en cultivos de Isochrysis galbana por medio de lavados por centrifugacion y la administracion de varios antibioticos (ampicilina, neomicina, kanamicina, cloranfenicol, sulfato G418, estreptomicina y carbencilina), adicionados en varias dosis y combinaciones. Todos los tratamientos fueron realizados por triplicado. La concentracion de bacterias heterotroficas y la densidad de celulas de I. galbana fue evaluada diariamente. Se calculo la concentracion no letal maxima y la concentracion letal (LC50). De forma individual, los antibioticos y los lavados por centrifugacion no fueron efectivos para reducir la carga bacteriana, pero su combinacion removio las bacterias de los cultivos. El maximo de sobrevivencia (84,6 ± 1,4%) y la reduccion de la carga bacteriana en I. galbana fue efectiva con la combinacion de 5 lavados por centrifugacion y la administracion de un coctel de ampicilina, kanamicina, neomicina, y estreptomicina por 48 h. Los valores de concentracion no letal maxima varian entre 75 a 106 µg mL-1 y LC50 se encontro entre 194 y 332 µg mL-1, por lo anterior, este protocolo resulta ser un metodo efectivo y rapido para obtener cultivos de I. galbana con carga bacteriana baja.
- Published
- 2016
- Full Text
- View/download PDF
46. Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico
- Author
-
Alexei F. Licea-Navarro, Estefanía Rodríguez, Enrique Rudiño-Piñera, Claudia Rodríguez-Almazán, and Jorge-Tonatiuh Ayala-Sumuano
- Subjects
0301 basic medicine ,biology ,lcsh:QH426-470 ,Ecology ,De novo transcriptome assembly ,Genomics ,Sea anemone ,Accession number (bioinformatics) ,biology.organism_classification ,Biochemistry ,Transcriptome ,03 medical and health sciences ,lcsh:Genetics ,030104 developmental biology ,Illumina ,Evolutionary biology ,Anthozoa ,Anthopleura dowii ,Genetics ,Molecular Medicine ,Anthopleura ,Identification (biology) ,Biotechnology - Abstract
Next-generation technologies for determination of genomics and transcriptomics composition have a wide range of applications. Moreover, the development of tools for big data set analysis has allowed the identification of molecules and networks involved in metabolism, evolution or behavior. By natural habitats aquatic organisms have implemented molecular strategies for survival, including the production and secretion of toxic compounds for their predators; therefore these organisms are possible sources of proteins or peptides with potential biotechnological application. In the last decade anthozoans, mainly octocorals but also sea anemones, have been proben to be a source of natural products. Members of the genus Anthopleura are one of the best known and most studied sea anemones because they are common constituents of rocky intertidal communities and show interesting ecological and biological phenomena (e.g. intraespecific competition, symbiosis, etc.); however, many aspects of these taxa remain in need to be analyzed. This work describes the transcriptome sequencing of Anthopleura dowii Verrill, 1869 (Cnidaria: Anthozoa: Actiniaria); this is the first report of this kind for these species. The data set used to construct the transcriptome has been deposited on NCBI's database. Illumina sequence reads are available under BioProject accession number PRJNA329297 and Sequence Read Archive under accession number SRP078992.
- Published
- 2017
- Full Text
- View/download PDF
47. Abstract 2651: Characterization of TIE2 function in cancer cell dormancy and bone metastases
- Author
-
Nicolás Serafín Higuera, Florian Drescher, Felipe Olvera-Rodriguez, Patricia Juárez, Samanta Jiménez Flores, Salvador Dueñas, Alexei F. Licea-Navarro, and Pierrick G.J. Fournier
- Subjects
Cancer Research ,Osteolysis ,Cell growth ,Cancer ,Bone metastasis ,Biology ,medicine.disease ,Metastasis ,Prostate cancer ,Oncology ,embryonic structures ,Cancer cell ,cardiovascular system ,medicine ,Cancer research ,Stem cell - Abstract
After arriving in bone, cancer cells can enter a dormancy state that can last for years, during which they are resistant to treatment. The bone microenvironment induces dormancy via mechanisms similar to the ones of hematopoietic stem cells (HSC). The angiopoietin receptor, TIE2, induces the dormancy of HSC and some cancer cells and is a target for anti-angiogenic treatments. However, its inhibition may restart the proliferation of cancer cells, posing the risk of bone metastasis growth, while increasing the sensitivity of cancer cells to chemotherapy. Thus, we aim to characterize the role of TIE2 in dormancy of bone metastases. We found that higher levels of Tie2 in the primary tumor of breast cancer (BCa) patients are associated with a good prognosis in multiple cohorts. However, expression of Tie2 protein or mRNA was either very low or undetected in cultured BCa and prostate cancer (PCa) cell lines. BCa and PCa cells transduced to express TIE2 constitutively showed a gradual loss of TIE2+ cells, despite continuous antibiotic selection. Congruently, in 5 different patient datasets, Tie2 expression is significantly lower in invasive BCa compared to healthy breast tissue. These results suggest that there is no expression of TIE2 in growing cancer cells. In MCF-7 TIE2tet BCa cells conditional TIE2 expression with a Tet-On system caused a significant decrease of cell proliferation and the percentage of cells in S and G2/M phase but not in MCF-7 GFPtet control cells. Expression of TIE2, but not GFP, significantly decreased mRNA levels of the proliferation marker Ki67 while increasing the dormancy markers p21 and p27. Additionally, TIE2 expression increased the resistance to the chemotherapeutic 5-Fluorouracil. 4T1 Tie2tet cells inoculated in the mammary fat pads of Balb/C mice receiving Dox showed significantly reduced tumor volume and weight of excised tumors compared to control mice, suggesting TIE2 caused a growth reduction. When intracardiacally inoculated, 4T1 Tie2tet cells caused bone metastases regardless of TIE2 expression. However, the osteolysis area was significantly decreased when TIE2 was expressed, indicating a delayed bone metastasis development. To reverse dormancy and increase chemotherapy sensitivity, we selected a shark antibody (vNAR) that binds to TIE2 using a synthetic library and phage display. In silico modeling indicated this clone could bind to the FN2 domain and inhibit the multimerization of TIE2, which could prevent signaling. Overall, we found that expression of TIE2 decreases BCa cell growth in vitro and in vivo, and their sensitivity to 5-Fluorouracil, while increasing the expression of dormancy marker in vitro, and the time to the development of metastasis and survival of BCa patients. Our results are then consistent with TIE2 inducing dormancy of cancer cells. Thus, neutralizing TIE2 with a vNAR in combination with cancer therapy could be used for the treatment of patients at risk of bone metastases. Citation Format: Florian Drescher, Salvador Dueñas, Felipe Olvera-Rodriguez, Nicolás Serafín Higuera, Samanta Jiménez Flores, Patricia Juarez, Alexei Licea-Navarro, Pierrick G. Fournier. Characterization of TIE2 function in cancer cell dormancy and bone metastases [abstract]. In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 2651.
- Published
- 2020
- Full Text
- View/download PDF
48. Functional and Mass Spectrometric Evaluation of an Anti-Tick Antigen Based on the P0 Peptide Conjugated to Bm86 Protein
- Author
-
Raúl Mejías, Rafmary Rodríguez Fernández, Gleysin Cabrera, Pedro E. Encinosa Guzmán, Jose L Alvarez, Hilda Garay, Gervásio Henrique Bechara, Alina Rodríguez Mallón, Ania Cabrales, Madelón Portela, Yamil Bello Soto, Mario Pablo Estrada, Alier Fuentes Castillo, Alexei F. Licea-Navarro, Samanta Jiménez, Osmany Guirola, Luis Méndez, Gustavo Seron Sanches, Luis Javier González, Rosario Durán, Fabiola Almeida, Satomy Pousa, Center for Genetic Engineering and Biotechnology (CIGB), CIGB, Pontifícia Universidade Católica do Paraná (PUCPR), Universidade Estadual Paulista (Unesp), Instituto de Ciencia Animal (ICA), National Laboratory for Parasitology, CICESE, Institut Pasteur de Montevideo, and Instituto de Investigaciones Biológicas Clemente Estable (IIBCE)
- Subjects
0301 basic medicine ,Microbiology (medical) ,Immunogen ,Bm86 ,chemical conjugation ,Rhipicephalus sanguineus ,030231 tropical medicine ,lcsh:Medicine ,Peptide ,anti-tick vaccine ,Megathura crenulata ,Article ,Anti-tick vaccine ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,parasitic diseases ,Immunology and Allergy ,Molecular Biology ,cross-linked peptides ,chemistry.chemical_classification ,General Immunology and Microbiology ,biology ,Immunogenicity ,lcsh:R ,Cross-linked peptides ,Chemical conjugation ,P0 ,biology.organism_classification ,peptide ,030104 developmental biology ,Infectious Diseases ,chemistry ,Biochemistry ,biology.protein ,Rhipicephalus microplus ,Keyhole limpet hemocyanin - Abstract
A synthetic 20 amino acid peptide of the ribosomal protein P0 from ticks, when conjugated to keyhole limpet hemocyanin from Megathura crenulata and used as an immunogen against Rhipicephalus microplus and Rhipicephalus sanguineus s.l. species, has shown efficacies of around 90%. There is also experimental evidence of a high efficacy of this conjugate against Amblyomma mixtum and Ixodes ricinus species, which suggest that this antigen could be a good broad-spectrum anti-tick vaccine candidate. In this study, the P0 peptide (pP0) was chemically conjugated to Bm86 as a carrier protein. SDS-PAGE analysis of this conjugate demonstrated that it is highly heterogeneous in size, carrying from 1 to 18 molecules of pP0 per molecule of Bm86. Forty-nine out of the 54 lysine residues and the N-terminal end of Bm86 were found partially linked to pP0 by using LC-MS/MS analysis and the combination of four different softwares. Several post-translational modifications of Bm86 protein were also identified by mass spectrometry. High immunogenicity and efficacy were achieved when dogs and cattle were vaccinated with the pP0&ndash, Bm86 conjugate and challenged with R. sanguineus s.l. and R. microplus, respectively. These results encourage the development of this antigen with promising possibilities as an anti-tick vaccine.
- Published
- 2020
- Full Text
- View/download PDF
49. Insight into the Metabolic Machinery of Deep‐Marine Microbes Grown with Light and Heavy Petroleum
- Author
-
Marla I. Macias-Contreras, Rafael Vazquez-Duhalt, Alexei F. Licea-Navarro, Edna L. Hernández-López, Abraham Guerrero, Aldo Moreno-Ulloa, Ricardo González-Sánchez, Andres Javier Tejeda-Mora, and Luis Donis Maturano
- Subjects
chemistry.chemical_compound ,chemistry ,Environmental chemistry ,Genetics ,Environmental science ,Petroleum ,Molecular Biology ,Biochemistry ,Biotechnology - Published
- 2020
- Full Text
- View/download PDF
50. Effects of Vibrio cholerae on fatty acid profiles in Isochrysis galbana
- Author
-
M. del Pilar Sánchez-Saavedra, Alexei F. Licea-Navarro, and Ceres A. Molina-Cárdenas
- Subjects
0106 biological sciences ,chemistry.chemical_classification ,biology ,Linolenic acid ,Linoleic acid ,Eicosatetraenoic acid ,Fatty acid ,Metabolism ,010501 environmental sciences ,biology.organism_classification ,medicine.disease_cause ,01 natural sciences ,Isochrysis galbana ,chemistry.chemical_compound ,chemistry ,Vibrio cholerae ,010608 biotechnology ,medicine ,lipids (amino acids, peptides, and proteins) ,Food science ,Agronomy and Crop Science ,0105 earth and related environmental sciences ,Polyunsaturated fatty acid - Abstract
We determined the effects on metabolism and fatty acid profiles in Isochrysis galbana when co-cultured with Vibrio cholerae. Monospecific cultures of I. galbana did not experience any changes in cell density, growth rate, organic dry weight, heterotrophic bacteria, chlorophyll a content, maximun electron transport rate (ETRm) or maximum photochemical quantum yield of photosystem II (Fv/Fm) values when co-cultured with V. cholerae. The growth of pathogenic V. cholerae was inhibited in co-cultures and the lipid content was higher compared to the monospecific cultures of I. galbana. The I. galbana-V. cholerae co-cultures had similar total saturated fatty acids (SFAs) content (53.2%) versus I. galbana cultures (55.6%). Total monounsaturated fatty acids (MUFAs) content was higher in monospecific I. galbana cultures than in the co-cultures. The total polyunsaturated fatty acids (PUFAs) content was higher in co-cultures (23.2%) versus monospecific cultures (15.9%). The interaction between I. galbana and V. cholerae altered the fatty acid levels in I. galbana cells and increased the production of linoleic acid (C18:2), linolenic acid (C18:3), gamma-linolenic acid (C18:3n6), eicosatrienoic acid (C20:3n-3), and eicosatetraenoic acid (C20:4).
- Published
- 2020
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.