177 results on '"Amaral, Luís A. Nunes"'
Search Results
2. Spreader events and the limitations of projected networks for capturing dynamics on multipartite networks
- Author
-
Lee, Hyojun A., Alves, Luiz G. A., and Amaral, Luís A. Nunes
- Subjects
Physics - Physics and Society - Abstract
Many systems of scientific interest can be conceptualized as multipartite networks. Examples include the spread of sexually transmitted infections, scientific collaborations, human friendships, product recommendation systems, and metabolic networks. In practice, these systems are often studied after projection onto a single class of nodes, losing crucial information. Here, we address a significant knowledge gap by comparing transmission dynamics on temporal multipartite networks and on their time-aggregated unipartite projections to determine the impact of the lost information on our ability to predict the systems' dynamics. We show that the dynamics of transmission models can be dramatically dissimilar on multipartite networks and on their projections at three levels: final outcome, the magnitude of the variability from realization to realization, and overall shape of the temporal trajectory. We find that the ratio of the number of nodes to the number of active edges over the time aggregation scale determines the ability of projected networks to capture the dynamics on the multipartite network. Finally, we explore which properties of a multipartite network are crucial in generating synthetic networks that better reproduce the dynamical behavior observed in real multipartite networks., Comment: 14 pages, 6 figures, published in Phys. Rev. E (2021)
- Published
- 2021
- Full Text
- View/download PDF
3. Centrality anomalies in complex networks as a result of model over-simplification
- Author
-
Alves, Luiz G. A., Aleta, Alberto, Rodrigues, Francisco A., Moreno, Yamir, and Amaral, Luis A. Nunes
- Subjects
Physics - Physics and Society ,Computer Science - Social and Information Networks - Abstract
Tremendous advances have been made in our understanding of the properties and evolution of complex networks. These advances were initially driven by information-poor empirical networks and theoretical analysis of unweighted and undirected graphs. Recently, information-rich empirical data complex networks supported the development of more sophisticated models that include edge directionality and weight properties, and multiple layers. Many studies still focus on unweighted undirected description of networks, prompting an essential question: how to identify when a model is simpler than it must be? Here, we argue that the presence of centrality anomalies in complex networks is a result of model over-simplification. Specifically, we investigate the well-known anomaly in betweenness centrality for transportation networks, according to which highly connected nodes are not necessarily the most central. Using a broad class of network models with weights and spatial constraints and four large data sets of transportation networks, we show that the unweighted projection of the structure of these networks can exhibit a significant fraction of anomalous nodes compared to a random null model. However, the weighted projection of these networks, compared with an appropriated null model, significantly reduces the fraction of anomalies observed, suggesting that centrality anomalies are a symptom of model over-simplification. Because lack of information-rich data is a common challenge when dealing with complex networks and can cause anomalies that misestimate the role of nodes in the system, we argue that sufficiently sophisticated models be used when anomalies are detected., Comment: 14 pages, including 9 figures. APS style. Accepted for publication in New Journal of Physics
- Published
- 2019
- Full Text
- View/download PDF
4. Forecasting the evolution of fast-changing transportation networks using machine learning
- Author
-
Lei, Weihua, Alves, Luiz G. A., and Amaral, Luís A. Nunes
- Published
- 2022
- Full Text
- View/download PDF
5. The Distribution of the Asymptotic Number of Citations to Sets of Publications by a Researcher or From an Academic Department Are Consistent With a Discrete Lognormal Model
- Author
-
Moreira, João A. G., Zeng, Xiao Han T., and Amaral, Luís A. Nunes
- Subjects
Physics - Physics and Society ,Computer Science - Digital Libraries - Abstract
How to quantify the impact of a researcher's or an institution's body of work is a matter of increasing importance to scientists, funding agencies, and hiring committees. The use of bibliometric indicators, such as the h-index or the Journal Impact Factor, have become widespread despite their known limitations. We argue that most existing bibliometric indicators are inconsistent, biased, and, worst of all, susceptible to manipulation. Here, we pursue a principled approach to the development of an indicator to quantify the scientific impact of both individual researchers and research institutions grounded on the functional form of the distribution of the asymptotic number of citations. We validate our approach using the publication records of 1,283 researchers from seven scientific and engineering disciplines and the chemistry departments at the 106 U.S. research institutions classified as "very high research activity". Our approach has three distinct advantages. First, it accurately captures the overall scientific impact of researchers at all career stages, as measured by asymptotic citation counts. Second, unlike other measures, our indicator is resistant to manipulation and rewards publication quality over quantity. Third, our approach captures the time-evolution of the scientific impact of research institutions., Comment: 20 pages, 11 figures, 3 tables
- Published
- 2015
- Full Text
- View/download PDF
6. Scaling and optimal synergy: Two principles determining microbial growth in complex media
- Author
-
Massucci, Francesco Alessandro, Guimerà, Roger, Amaral, Luís A. Nunes, and Sales-Pardo, Marta
- Subjects
Physics - Biological Physics ,Condensed Matter - Other Condensed Matter ,Quantitative Biology - Cell Behavior ,Quantitative Biology - Molecular Networks - Abstract
High-throughput experimental techniques and bioinformatics tools make it possible to obtain reconstructions of the metabolism of microbial species. Combined with mathematical frameworks such as flux balance analysis, which assumes that nutrients are used so as to maximize growth, these reconstructions enable us to predict microbial growth. Although such predictions are generally accurate, these approaches do not give insights on how different nutrients are used to produce growth, and thus are difficult to generalize to new media or to different organisms. Here, we propose a systems-level phenomenological model of metabolism inspired by the virial expansion. Our model predicts biomass production given the nutrient uptakes and a reduced set of parameters, which can be easily determined experimentally. To validate our model, we test it against in silico simulations and experimental measurements of growth, and find good agreement. From a biological point of view, our model uncovers the impact that individual nutrients and the synergistic interaction between nutrient pairs have on growth, and suggests that we can understand the growth maximization principle as the optimization of nutrient synergies., Comment: 31 pages, 13 figures
- Published
- 2015
- Full Text
- View/download PDF
7. A high-reproducibility and high-accuracy method for automated topic classification
- Author
-
Lancichinetti, Andrea, Sirer, M. Irmak, Wang, Jane X., Acuna, Daniel, Körding, Konrad, and Amaral, Luís A. Nunes
- Subjects
Statistics - Machine Learning ,Computer Science - Information Retrieval ,Computer Science - Learning ,Physics - Physics and Society - Abstract
Much of human knowledge sits in large databases of unstructured text. Leveraging this knowledge requires algorithms that extract and record metadata on unstructured text documents. Assigning topics to documents will enable intelligent search, statistical characterization, and meaningful classification. Latent Dirichlet allocation (LDA) is the state-of-the-art in topic classification. Here, we perform a systematic theoretical and numerical analysis that demonstrates that current optimization techniques for LDA often yield results which are not accurate in inferring the most suitable model parameters. Adapting approaches for community detection in networks, we propose a new algorithm which displays high-reproducibility and high-accuracy, and also has high computational efficiency. We apply it to a large set of documents in the English Wikipedia and reveal its hierarchical structure. Our algorithm promises to make "big data" text analysis systems more reliable., Comment: 23 pages, 24 figures
- Published
- 2014
8. A cautionary tale from the machine scientist
- Author
-
Amaral, Luís A. Nunes
- Published
- 2022
- Full Text
- View/download PDF
9. A universal information theoretic approach to the identification of stopwords
- Author
-
Gerlach, Martin, Shi, Hanyu, and Amaral, Luís A. Nunes
- Published
- 2019
- Full Text
- View/download PDF
10. The Possible Role of Resource Requirements and Academic Career-Choice Risk on Gender Differences in Publication Rate and Impact
- Author
-
Duch, Jordi, Zeng, Xiao Han T., Sales-Pardo, Marta, Radicchi, Filippo, Otis, Shayna, Woodruff, Teresa K., and Amaral, Luis A. Nunes
- Subjects
Physics - Physics and Society ,Computer Science - Digital Libraries ,Physics - Data Analysis, Statistics and Probability - Abstract
Many studies demonstrate that there is still a significant gender bias, especially at higher career levels, in many areas including science, technology, engineering, and mathematics (STEM). We investigated field-dependent, gender-specific effects of the selective pressures individuals experience as they pursue a career in academia within seven STEM disciplines. We built a unique database that comprises 437,787 publications authored by 4,292 faculty members at top United States research universities. Our analyses reveal that gender differences in publication rate and impact are discipline-specific. Our results also support two hypotheses. First, the widely-reported lower publication rates of female faculty are correlated with the amount of research resources typically needed in the discipline considered, and thus may be explained by the lower level of institutional support historically received by females. Second, in disciplines where pursuing an academic position incurs greater career risk, female faculty tend to have a greater fraction of higher impact publications than males. Our findings have significant, field-specific, policy implications for achieving diversity at the faculty level within the STEM disciplines., Comment: 9 figures and 3 tables
- Published
- 2012
- Full Text
- View/download PDF
11. On Universality in Human Correspondence Activity
- Author
-
Malmgren, R. Dean, Stouffer, Daniel B., Campanharo, Andriana S. L. O., and Amaral, Luis A. Nunes
- Subjects
Physics - Physics and Society ,Physics - Data Analysis, Statistics and Probability - Abstract
Identifying and modeling patterns of human activity has important ramifications in applications ranging from predicting disease spread to optimizing resource allocation. Because of its relevance and availability, written correspondence provides a powerful proxy for studying human activity. One school of thought is that human correspondence is driven by responses to received correspondence, a view that requires distinct response mechanism to explain e-mail and letter correspondence observations. Here, we demonstrate that, like e-mail correspondence, the letter correspondence patterns of 16 writers, performers, politicians, and scientists are well-described by the circadian cycle, task repetition and changing communication needs. We confirm the universality of these mechanisms by properly rescaling letter and e-mail correspondence statistics to reveal their underlying similarity., Comment: 17 pages, 3 figures, 1 table
- Published
- 2009
- Full Text
- View/download PDF
12. Validation of a tool for estimating clinician recognition of ARDS using data from the international LUNG SAFE study
- Author
-
Bechel, Meagan A., primary, Madotto, Fabiana, additional, Pah, Adam R., additional, Bellani, Giacomo, additional, Laffey, John G., additional, Pham, Tài, additional, Amaral, Luís A. Nunes, additional, and Weiss, Curtis H., additional
- Published
- 2023
- Full Text
- View/download PDF
13. Detection of node group membership in networks with group overlap
- Author
-
Sawardecker, Erin N., Sales-Pardo, Marta, and Amaral, Luís A. Nunes
- Subjects
Physics - Data Analysis, Statistics and Probability ,Physics - Physics and Society - Abstract
Most networks found in social and biochemical systems have modular structures. An important question prompted by the modularity of these networks is whether nodes can be said to belong to a single group. If they cannot, we would need to consider the role of "overlapping communities." Despite some efforts in this direction, the problem of detecting overlapping groups remains unsolved because there is neither a formal definition of overlapping community, nor an ensemble of networks with which to test the performance of group detection algorithms when nodes can belong to more than one group. Here, we introduce an ensemble of networks with overlapping groups. We then apply three group identification methods--modularity maximization, k-clique percolation, and modularity-landscape surveying--to these networks. We find that the modularity-landscape surveying method is the only one able to detect heterogeneities in node memberships, and that those heterogeneities are only detectable when the overlap is small. Surprisingly, we find that the k-clique percolation method is unable to detect node membership for the overlapping case., Comment: 12 pages, 6 figures. To appear in Euro. Phys. J B
- Published
- 2008
- Full Text
- View/download PDF
14. Functional cartography of complex metabolic networks
- Author
-
Guimera, Roger and Amaral, Luis A. Nunes
- Subjects
Quantitative Biology - Molecular Networks ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
High-throughput techniques are leading to an explosive growth in the size of biological databases and creating the opportunity to revolutionize our understanding of life and disease. Interpretation of these data remains, however, a major scientific challenge. Here, we propose a methodology that enables us to extract and display information contained in complex networks. Specifically, we demonstrate that one can (i) find functional modules in complex networks, and (ii) classify nodes into universal roles according to their pattern of intra- and inter-module connections. The method thus yields a ``cartographic representation'' of complex networks. Metabolic networks are among the most challenging biological networks and, arguably, the ones with more potential for immediate applicability. We use our method to analyze the metabolic networks of twelve organisms from three different super-kingdoms. We find that, typically, 80% of the nodes are only connected to other nodes within their respective modules, and that nodes with different roles are affected by different evolutionary constraints and pressures. Remarkably, we find that low-degree metabolites that connect different modules are more conserved than hubs whose links are mostly within a single module., Comment: 17 pages, 4 figures. Go to http://amaral.northwestern.edu for the PDF file of the reprint
- Published
- 2005
- Full Text
- View/download PDF
15. Scaling Phenomena in the Growth Dynamics of Scientific Output
- Author
-
Matia, Kaushik, Amaral, Luis A. Nunes, Luwel, Marc, Moed, Henk. F., and Stanley, H. Eugene
- Subjects
Physics - Physics and Society - Abstract
We analyze a set of three databases at different levels of aggregation (i) a database of approximately $10^6$ publications of 247 countries in the period between 1980--2001. (ii) A database of 508 academic institutions from European Union (EU) and 408 institutes from USA in the 11 year period between during 1991--2001. (iii) A database comprising of 2330 Flemish authors in the period 1980--2000. At all levels of aggregation we find that the mean annual growth rates of publications is independent of the number of publications of the various units involved. We also find that the standard deviation of the distribution of annual growth rates decays with the number of publications as a power law with exponent $\approx 0.3$. These findings are consistent with those of recent studies of systems such as the size of R&D funding budgets of countries, the research publication volumes of US universities, and the size of business firms.
- Published
- 2005
16. Levels of Complexity in Scale-Invariant Neural Signals
- Author
-
Ivanov, Plamen Ch., Hausdorff, Jeffrey M., Havlin, S., Amaral, Luís A. Nunes, Arai, Kuniharu, Schulte-Frohlinde, Verena, Yoneyama, Mitsuru, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
Many physical and physiological signals exhibit complex scale-invariant features characterized by $1/f$ scaling and long-range power-law correlations, suggesting a possibly common control mechanism. Specifically, it has been suggested that dynamical processes influenced by inputs and feedback on multiple time scales may be sufficient to give rise to $1/f$ scaling and scale invariance. Two examples of physiologic signals that are the output of hierarchical, multi-scale physiologic systems under neural control are the human heartbeat and human gait. Here we show that while both cardiac interbeat interval and gait interstride interval time series under healthy conditions have comparable $1/f$ scaling, they still may belong to different complexity classes. Our analysis of the magnitude series correlations and multifractal scaling exponents of the fluctuations in these two signals demonstrates that in contrast with the nonlinear multifractal behavior found in healthy heartbeat dynamics, gait time series exhibit less complex, close to monofractal behavior and a low degree of nonlinearity. These findings are of interest because they underscore the limitations of traditional two-point correlation methods in fully characterizing physiologic and physical dynamics. In addition, these results suggest that different mechanisms of control may be responsible for varying levels of complexity observed in physiological systems under neural regulation and in physical systems that possess similar $1/f$ scaling., Comment: 9 pages, 3 figures
- Published
- 2004
17. Universal Mechanisms in the Growth of Voluntary Organizations
- Author
-
Liljeros, Fredrik, Amaral, Luis A Nunes, and Stanley, H. Eugene
- Subjects
Nonlinear Sciences - Adaptation and Self-Organizing Systems ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
We analyze the growth statistics of Swedish trade unions and find a universal functional form for the probability distribution of growth rates of union size, and a power law dependence of the standard deviation of this distribution on the number of members of the union. We also find that the typical size and the typical number of local chapters scales as a power law of the union size. Intriguingly, our results are similar to results reported for other human organizations of a quite different nature. Our findings are consistent with the possibility that universal mechanisms may exist governing the growth patterns of human organizations.
- Published
- 2003
18. Heuristic Segmentation of a Nonstationary Time Series
- Author
-
Fukuda, Kensuke, Stanley, H. Eugene, and Amaral, Luis A. Nunes
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
Many phenomena, both natural and human-influenced, give rise to signals whose statistical properties change under time translation, i.e., are nonstationary. For some practical purposes, a nonstationary time series can be seen as a concatenation of stationary segments. Using a segmentation algorithm, it has been reported that for heart beat data and Internet traffic fluctuations--the distribution of durations of these stationary segments decays with a power law tail. A potential technical difficulty that has not been thoroughly investigated is that a nonstationary time series with a (scale-free) power law distribution of stationary segments is harder to segment than other nonstationary time series because of the wider range of possible segment sizes. Here, we investigate the validity of a heuristic segmentation algorithm recently proposed by Bernaola-Galvan et al. by systematically analyzing surrogate time series with different statistical properties. We find that if a given nonstationary time series has stationary periods whose size is distributed as a power law, the algorithm can split the time series into a set of stationary segments with the correct statistical properties. We also find that the estimated power law exponent of the distribution of stationary-segment sizes is affected by (i) the minimum segment size, and (ii) the ratio of the standard deviation of the mean values of the segments, and the standard deviation of the fluctuations within a segment. Furthermore, we determine that the performance of the algorithm is generally not affected by uncorrelated noise spikes or by weak long-range temporal correlations of the fluctuations within segments., Comment: 23 pages, 14 figures
- Published
- 2003
- Full Text
- View/download PDF
19. Distributions of number of sexual partnerships have power law decaying tails and finite variance
- Author
-
Liljeros, Fredrik, Edling, Christofer R., Stanley, H. Eugene, Aberg, Y., and Amaral, Luis A. Nunes
- Subjects
Condensed Matter - Disordered Systems and Neural Networks ,Condensed Matter - Statistical Mechanics - Abstract
In a recent paper, James Holland Jones and Mark Handcock re-analyze two of the four datasets comprising a database, first analyzed by us, which records the number of distinct sexual partners for Swedish men and women. We argue that the claims of Jones and Handcock can be interpreted in a misleading fashion., Comment: 6 pages
- Published
- 2003
20. Power-law temporal auto-correlations in day-long records of human physical activity and their alteration with disease
- Author
-
Amaral, Luis A. Nunes, Soares, Danyel J. Bezerra, da Silva, Luciano R., Lucena, Liacir S., Saito, Mariko, Kumano, Hiroaki, Aoyagi, Naoko, and Yamamoto, Yoshiharu
- Subjects
Condensed Matter ,Quantitative Biology - Abstract
We investigate long-duration time series of human physical activity under three different conditions: healthy individuals in (i) a constant routine protocol and (ii) in regular daily routine, and (iii) individuals diagnosed with multiple chemical sensitivities. We find that in all cases human physical activity displays power law decaying temporal auto-correlations. Moreover, we find that under regular daily routine, time correlations of physical activity are significantly different during diurnal and nocturnal periods but that no difference exists under constant routine conditions. Finally, we find significantly different auto-correlations for diurnal records of patients with multiple chemical sensitivities., Comment: 5 pages with 3 figures (LaTeX, RevTeX4, eps)
- Published
- 2002
21. Extremum statistics in scale-free network models
- Author
-
Moreira, Andre Auto, Andrade Jr, Jose Soares de, and Amaral, Luis A. Nunes
- Subjects
Condensed Matter - Disordered Systems and Neural Networks - Abstract
We investigate the statistics of the most connected nodes in scale-free networks. For a scale-free network model with homogeneous nodes, we show by means of extensive simulations that the exponential truncation--due to the finite size of the network--of the degree distribution governs the scaling of the extreme values. We also find that the distribution of maxima obeys scaling and follows the Gumbel statistics. For a scale-free network model with heterogeneous nodes, we show that scaling no longer holds and that the truncation of the degree distribution no longer controls the maximum distribution. Moreover, we find that neither the Gumbel nor the Frechet statistics describe the data.
- Published
- 2002
22. Non-L\'evy Distribution of Commodity Price Fluctuations
- Author
-
Matia, Kaushik, Amaral, Luis A. Nunes, Goodwin, Stephen P., and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Quantitative Finance - Statistical Finance - Abstract
Price fluctuations of commodities like cotton and wheat are thought to display probability distributions of returns that follow a L\'evy stable distribution. Recent analysis of stocks and foreign exchange markets show that the probability distributions are not L\'evy stable, a plausible result since commodity markets have quite different features than stock markets. We analyze daily returns of 29 commodities over typically 20 years and find that the distributions of returns decay as power laws with exponents $\alpha$ which have values $\alpha > 2$, outside the L\'evy-stable domain. We also find that the amplitudes of the returns display long-range time correlations, like stocks, while the returns themselves are uncorrelated for time lags $\approx$ 2 days, much larger than for stocks ($\approx$ 4 min)., Comment: 4 pages 5 figures
- Published
- 2002
23. Truncation of power law behavior in 'scale-free' network models due to information filtering
- Author
-
Mossa, Stefano, Barthelemy, Marc, Stanley, H. Eugene, and Amaral, Luis A. Nunes
- Subjects
Condensed Matter - Statistical Mechanics ,Condensed Matter - Disordered Systems and Neural Networks - Abstract
We formulate a general model for the growth of scale-free networks under filtering information conditions--that is, when the nodes can process information about only a subset of the existing nodes in the network. We find that the distribution of the number of incoming links to a node follows a universal scaling form, i.e., that it decays as a power law with an exponential truncation controlled not only by the system size but also by a feature not previously considered, the subset of the network ``accessible'' to the node. We test our model with empirical data for the World Wide Web and find agreement., Comment: LaTeX2e and RevTeX4, 4 pages, 4 figures. Accepted for publication in Physical Review Letters
- Published
- 2002
- Full Text
- View/download PDF
24. Dynamics of Sleep-Wake Transitions During Sleep
- Author
-
Lo, Chung-Chuan, Amaral, Luis A. Nunes, Havlin, Shlomo, Ivanov, Plamen Ch., Penzel, Thomas, Peter, Joerg-Hermann, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
We study the dynamics of the awakening during the night for healthy subjects and find that the wake and the sleep periods exhibit completely different behavior: the durations of wake periods are characterized by a scale-free power-law distribution, while the durations of sleep periods have an exponential distribution with a characteristic time scale. We find that the characteristic time scale of sleep periods changes throughout the night. In contrast, there is no measurable variation in the power-law behavior for the durations of wake periods. We develop a stochastic model which agrees with the data and suggests that the difference in the dynamics of sleep and wake states arises from the constraints on the number of microstates in the sleep-wake system., Comment: Final form with some small corrections. To be published in Europhysics Letters, vol. 57, issue no. 5, 1 March 2002, pp. 625-631
- Published
- 2001
- Full Text
- View/download PDF
25. Behavioral-Independent Features of Complex Heartbeat Dynamics
- Author
-
Amaral, Luis A. Nunes, Ivanov, Plamen Ch., Aoyagi, Naoko, Hidaka, Ichiro, Tomono, Shinji, Goldberger, Ary L., Stanley, H. Eugene, and Yamamoto, Yoshiharu
- Subjects
Condensed Matter - Statistical Mechanics ,Condensed Matter - Disordered Systems and Neural Networks ,Quantitative Biology - Abstract
We test whether the complexity of cardiac interbeat interval time series is simply a consequence of the wide range of scales characterizing human behavior, especially physical activity, by analyzing data taken from healthy adult subjects under three conditions with controls: (i) a ``constant routine'' protocol where physical activity and postural changes are kept to a minimum, (ii) sympathetic blockade, and (iii) parasympathetic blockade. We find that when fluctuations in physical activity and other behavioral modifiers are minimized, a remarkable level of complexity of heartbeat dynamics remains, while for neuroautonomic blockade the multifractal complexity decreases., Comment: 4 pages with 6 eps figures. Latex file. For more details or for downloading the PDF file of the published article see http://polymer.bu.edu/~amaral/Heart.html and http://polymer.bu.edu/~amaral/Multifractal.html
- Published
- 2001
- Full Text
- View/download PDF
26. The Web of Human Sexual Contacts
- Author
-
Liljeros, Fredrik, Edling, Christofer R., Amaral, Luis A. Nunes, Stanley, H. Eugene, and Aberg, Yvonne
- Subjects
Condensed Matter - Statistical Mechanics ,Condensed Matter - Disordered Systems and Neural Networks ,Quantitative Biology - Abstract
Many ``real-world'' networks are clearly defined while most ``social'' networks are to some extent subjective. Indeed, the accuracy of empirically-determined social networks is a question of some concern because individuals may have distinct perceptions of what constitutes a social link. One unambiguous type of connection is sexual contact. Here we analyze data on the sexual behavior of a random sample of individuals, and find that the cumulative distributions of the number of sexual partners during the twelve months prior to the survey decays as a power law with similar exponents $\alpha \approx 2.4$ for females and males. The scale-free nature of the web of human sexual contacts suggests that strategic interventions aimed at preventing the spread of sexually-transmitted diseases may be the most efficient approach., Comment: 7 pages with 2 eps figures. Latex file. For more details or for downloading the PDF file of the published article see http://polymer.bu.edu/~amaral/WebofContacts.html . For more results on teh structure of complex networks see http://polymer.bu.edu/~amaral/Networks.html
- Published
- 2001
- Full Text
- View/download PDF
27. Scale Invariance in the Nonstationarity of Physiological Signals
- Author
-
Bernaola-Galvan, Pedro, Ivanov, Plamen Ch., Amaral, Luis A. Nunes, Goldberger, Ary L., and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Physics - Biological Physics ,Quantitative Biology - Abstract
We introduce a segmentation algorithm to probe temporal organization of heterogeneities in human heartbeat interval time series. We find that the lengths of segments with different local values of heart rates follow a power-law distribution. This scale-invariant structure is not a simple consequence of the long-range correlations present in the data. We also find that the differences in mean heart rates between consecutive segments display a common functional form, but with different parameters for healthy individuals and for patients with heart failure. This finding may provide information into the way heart rate variability is reduced in cardiac disease., Comment: 13 pages, 5 figures, corrected typos
- Published
- 2000
- Full Text
- View/download PDF
28. Classes of behavior of small-world networks
- Author
-
Amaral, Luis A. Nunes, Scala, Antonio, Barthelemy, Marc, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
Small-world networks are the focus of recent interest because they appear to circumvent many of the limitations of either random networks or regular lattices as frameworks for the study of interaction networks of complex systems. Here, we report an empirical study of the statistical properties of a variety of diverse real-world networks. We present evidence of the occurrence of three classes of small-world networks: (a) scale-free networks, characterized by a vertex connectivity distribution that decays as a power law; (b) broad-scale networks, characterized by a connectivity distribution that has a power-law regime followed by a sharp cut-off; (c) single-scale networks, characterized by a connectivity distribution with a fast decaying tail. Moreover, we note for the classes of broad-scale and single-scale networks that there are constraints limiting the addition of new links. Our results suggest that the nature of such constraints may be the controlling factor for the emergence of different classes of networks.
- Published
- 2000
- Full Text
- View/download PDF
29. Economic Fluctuations and Diffusion
- Author
-
Plerou, Vasiliki, Gopikrishnan, Parameswaran, Amaral, Luis. A. Nunes, Gabaix, Xavier, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Condensed Matter - Disordered Systems and Neural Networks ,Quantitative Finance - Statistical Finance - Abstract
Stock price changes occur through transactions, just as diffusion in physical systems occurs through molecular collisions. We systematically explore this analogy and quantify the relation between trading activity - measured by the number of transactions $N_{\Delta t}$ - and the price change $G_{\Delta t}$, for a given stock, over a time interval $[t, t+\Delta t]$. To this end, we analyze a database documenting every transaction for 1000 US stocks over the two-year period 1994-1995. We find that price movements are equivalent to a complex variant of diffusion, where the diffusion coefficient fluctuates drastically in time. We relate the analog of the diffusion coefficient to two microscopic quantities: (i) the number of transactions $N_{\Delta t}$ in $\Delta t$, which is the analog of the number of collisions and (ii) the local variance $w^2_{\Delta t}$ of the price changes for all transactions in $\Delta t$, which is the analog of the local mean square displacement between collisions. We study the distributions of both $N_{\Delta t}$ and $w_{\Delta t}$, and find that they display power-law tails. Further, we find that $N_{\Delta t}$ displays long-range power-law correlations in time, whereas $w_{\Delta t}$ does not. Our results are consistent with the interpretation that the pronounced tails of the distribution of $G_{\Delta t} are due to $w_{\Delta t}$, and that the long-range correlations previously found for $| G_{\Delta t} |$ are due to $N_{\Delta t}$., Comment: RevTex 2 column format. 6 pages, 36 references, 15 eps figures
- Published
- 1999
- Full Text
- View/download PDF
30. Ivory Tower Universities and Competitive Business Firms
- Author
-
Plerou, Vasiliki, Amaral, Luis A. Nunes, Gopikrishnan, Parameswaran, Meyer, Martin, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
There is nowadays considerable interest on ways to quantify the dynamics of research activities, in part due to recent changes in research and development (R&D) funding. Here, we seek to quantify and analyze university research activities, and compare their growth dynamics with those of business firms. Specifically, we analyze five distinct databases, the largest of which is a National Science Foundation database of the R&D expenditures for science and engineering of 719 United States (US) universities for the 17-year period 1979--1995. We find that the distribution of growth rates displays a ``universal'' form that does not depend on the size of the university or on the measure of size used, and that the width of this distribution decays with size as a power law. Our findings are quantitatively similar to those independently uncovered for business firms, and consistent with the hypothesis that the growth dynamics of complex organizations may be governed by universal mechanisms., Comment: 5 pages in multicolumn LaTeX format with 11 eps figures. To appear in Nature
- Published
- 1999
- Full Text
- View/download PDF
31. Multifractality in Human Heartbeat Dynamics
- Author
-
Ivanov, Plamen Ch., Amaral, Luís A. Nunes, Goldberger, Ary L., Havlin, Shlomo, Rosenblum, Michael G., Struzik, Zbigniew, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Quantitative Biology - Abstract
Recent evidence suggests that physiological signals under healthy conditions may have a fractal temporal structure. We investigate the possibility that time series generated by certain physiological control systems may be members of a special class of complex processes, termed multifractal, which require a large number of exponents to characterize their scaling properties. We report on evidence for multifractality in a biological dynamical system --- the healthy human heartbeat. Further, we show that the multifractal character and nonlinear properties of the healthy heart rate are encoded in the Fourier phases. We uncover a loss of multifractality for a life-threatening condition, congestive heart failure., Comment: 19 pages, latex2e using rotate and epsf, with 5 ps figures; to appear in Nature, 3 June, 1999
- Published
- 1999
- Full Text
- View/download PDF
32. Scaling of the distribution of fluctuations of financial market indices
- Author
-
Gopikrishnan, Parameswaran, Plerou, Vasiliki, Amaral, Luis A. Nunes, Meyer, Martin, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Condensed Matter - Disordered Systems and Neural Networks ,Quantitative Finance - Statistical Finance - Abstract
We study the distribution of fluctuations over a time scale $\Delta t$ (i.e., the returns) of the S&P 500 index by analyzing three distinct databases. Database (i) contains approximately 1 million records sampled at 1 min intervals for the 13-year period 1984-1996, database (ii) contains 8686 daily records for the 35-year period 1962-1996, and database (iii) contains 852 monthly records for the 71-year period 1926-1996. We compute the probability distributions of returns over a time scale $\Delta t$, where $\Delta t$ varies approximately over a factor of 10^4 - from 1 min up to more than 1 month. We find that the distributions for $\Delta t \leq$ 4 days (1560 mins) are consistent with a power-law asymptotic behavior, characterized by an exponent $\alpha \approx 3$, well outside the stable L\'evy regime $0 < \alpha < 2$. To test the robustness of the S&P result, we perform a parallel analysis on two other financial market indices. Database (iv) contains 3560 daily records of the NIKKEI index for the 14-year period 1984-97, and database (v) contains 4649 daily records of the Hang-Seng index for the 18-year period 1980-97. We find estimates of $\alpha$ consistent with those describing the distribution of S&P 500 daily-returns. One possible reason for the scaling of these distributions is the long persistence of the autocorrelation function of the volatility. For time scales longer than $(\Delta t)_{\times} \approx 4$ days, our results are consistent with slow convergence to Gaussian behavior., Comment: 12 pages in multicol LaTeX format with 27 postscript figures (Submitted to PRE May 20, 1999). See http://polymer.bu.edu/~amaral/Professional.html for more of our work on this area
- Published
- 1999
- Full Text
- View/download PDF
33. Universal and non-universal properties of cross-correlations in financial time series
- Author
-
Plerou, Vasiliki, Gopikrishnan, Parameswaran, Rosenow, Bernd, Amaral, Luis A. Nunes, and Stanley, H. Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Condensed Matter - Disordered Systems and Neural Networks ,Quantitative Finance - Statistical Finance - Abstract
We use methods of random matrix theory to analyze the cross-correlation matrix C of price changes of the largest 1000 US stocks for the 2-year period 1994-95. We find that the statistics of most of the eigenvalues in the spectrum of C agree with the predictions of random matrix theory, but there are deviations for a few of the largest eigenvalues. We find that C has the universal properties of the Gaussian orthogonal ensemble of random matrices. Furthermore, we analyze the eigenvectors of C through their inverse participation ratio and find eigenvectors with large inverse participation ratios at both edges of the eigenvalue spectrum--a situation reminiscent of results in localization theory., Comment: 14 pages, 3 figures, Revtex
- Published
- 1999
- Full Text
- View/download PDF
34. Comment on: Kinetic Roughening in Slow Combustion of Paper
- Author
-
Amaral, Luis A. Nunes and Makse, Hernan A.
- Subjects
Condensed Matter - Disordered Systems and Neural Networks - Abstract
We comment on a recent Letter by Maunuksela et al. [Phys. Rev. Lett. 79, 1515 (1997)]., Comment: 1 page, 1 figure, http://polymer.bu.edu/~hmakse/Home.html
- Published
- 1998
- Full Text
- View/download PDF
35. Inverse Cubic Law for the Probability Distribution of Stock Price Variations
- Author
-
Gopikrishnan, Parameswaran, Meyer, Martin, Amaral, Luis A Nunes, and Stanley, H Eugene
- Subjects
Condensed Matter - Statistical Mechanics ,Quantitative Finance - Statistical Finance - Abstract
The probability distribution of stock price changes is studied by analyzing a database (the Trades and Quotes Database) documenting every trade for all stocks in three major US stock markets, for the two year period Jan 1994 -- Dec 1995. A sample of 40 million data points is extracted, which is substantially larger than studied hitherto. We find an asymptotic power-law behavior for the cumulative distribution with an exponent alpha approximately 3, well outside the Levy regime 0< alpha <2., Comment: 5 pages, 4 figures, RevTex 2 figures added
- Published
- 1998
- Full Text
- View/download PDF
36. Self-organized criticality in a rice-pile model
- Author
-
Amaral, Luis A. Nunes and Lauritsen, Kent B.
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
We present a new model for relaxations in piles of granular material. The relaxations are determined by a stochastic rule which models the effect of friction between the grains. We find power-law distributions for avalanche sizes and lifetimes characterized by the exponents $\tau = 1.53 \pm 0.05$ and $y = 1.84 \pm 0.05$, respectively. For the discharge events, we find a characteristic size that scales with the system size as $L^\mu$, with $\mu = 1.20 \pm 0.05$. We also find that the frequency of the discharge events decrease with the system size as $L^{-\mu'}$ with $\mu' = 1.20 \pm 0.05$., Comment: 4 pages, RevTex, multicol, epsf, rotate (sty files provided). To appear Phys. Rev. E Rapid Communication (Nov or Dec 96)
- Published
- 1996
- Full Text
- View/download PDF
37. Energy avalanches in a rice-pile model
- Author
-
Amaral, Luis A. Nunes and Lauritsen, Kent B.
- Subjects
Condensed Matter - Statistical Mechanics - Abstract
We investigate a one-dimensional rice-pile model. We show that the distribution of dissipated potential energy decays as a power law with an exponent $\alpha=1.53$. The system thus provides a one-dimensional example of self-organized criticality. Different driving conditions are examined in order to allow for comparison with experiments., Comment: 8 pages, elsart sty files (provided)
- Published
- 1996
- Full Text
- View/download PDF
38. Impurity-induced diffusion bias in epitaxial growth
- Author
-
Amaral, Luis A. Nunes and Krug, Joachim
- Subjects
Condensed Matter - Abstract
We introduce two models for the action of impurities in epitaxial growth. In the first, the interaction between the diffusing adatoms and the impurities is ``barrier''-like and, in the second, it is ``trap''-like. For the barrier model, we find a symmetry breaking effect that leads to an overall down-hill current. As expected, such a current produces Edwards-Wilkinson scaling. For the trap model, no symmetry breaking occurs and the scaling behavior appears to be of the conserved-KPZ type., Comment: 5 pages(with the 5 figures), latex, revtex3.0, epsf, rotate, multicol
- Published
- 1996
- Full Text
- View/download PDF
39. Scaling Behavior of Driven Interfaces Above the Depinning Transition
- Author
-
Makse, Hernan A. and Amaral, Luis A. Nunes
- Subjects
Condensed Matter - Abstract
We study the depinning transition for models representative of each of the two universality classes of interface roughening with quenched disorder. For one of the universality classes, the roughness exponent changes value at the transition, while the dynamical exponent remains unchanged. We also find that the prefactor of the width scales with the driving force. We propose several scaling relations connecting the values of the exponents on both sides of the transition, and discuss some experimental results in light of these findings., Comment: Revtex 3.0, 4 pages in PRL format + 5 figures (available at ftp://jhilad.bu.edu/pub/abbhhss/ma-figures.tar.Z ) submitted to Phys Rev Lett
- Published
- 1994
- Full Text
- View/download PDF
40. The Currents beneath the 'Rising Tide' of School Choice: An Analysis of Student Enrollment Flows in the Chicago Public Schools
- Author
-
Sirer, M. Irmak, Maroulis, Spiro, Guimerà, Roger, Wilensky, Uri, and Amaral, Luís A. Nunes
- Abstract
Existing research highlights that families face geographic, social, and psychological constraints that may limit the extent to which competition can take hold in school choice programs. In this paper, we address the implications of such findings by creating a network of student flows from 11 cohorts of eighth-grade students in the Chicago Public Schools (CPS). We applied a custom algorithm to group together schools with similar sending and receiving patterns, and calculated the difference in mean achievement between a student's attended and assigned high schools. For all identified school groupings, we found that the students were on average moving to higher achieving schools. We also found that the movement toward higher achieving schools of the top achievement quartile of students was over twice as large as that of the bottom quartile, but that the flows of both the highest and lowest achieving student quartiles were toward higher achieving destinations. Our results suggest that student movements in CPS between the years of 2001 to 2005 were consistent with creating market pressure for improvement as well as increasing segregation by achievement. However, further research into how schools responded to those movements is required to make inferences about the level or consequences of competition generated by choice-related reforms during that time.
- Published
- 2015
- Full Text
- View/download PDF
41. Reply to: Four personality types may be neither robust nor exhaustive
- Author
-
Gerlach, Martin, Revelle, William, and Amaral, Luís A. Nunes
- Published
- 2019
- Full Text
- View/download PDF
42. THE CURRENTS BENEATH THE "RISING TIDE" OF SCHOOL CHOICE: AN ANALYSIS OF STUDENT ENROLLMENT FLOWS IN THE CHICAGO PUBLIC SCHOOLS
- Author
-
Sirer, M. Irmak, Maroulis, Spiro, Guimerà, Roger, Wilensky, Uri, and Amaral, Luís A. Nunes
- Published
- 2015
43. Cross-evaluation of metrics to estimate the significance of creative works
- Author
-
Wasserman, Max, Zeng, Xiao Han T., and Amaral, Luís A. Nunes
- Published
- 2015
44. Statistical Properties of Commodity Price Fluctuations
- Author
-
Matia, Kaushik, Ashkenazy, Yosef, Amaral, Luis A. Nunes, Goodwin, Stephen P., Stanley, H. Eugene, and Takayasu, Hideki, editor
- Published
- 2004
- Full Text
- View/download PDF
45. Quantifying Empirical Economic Fluctuations using the Organizing Principles of Scale Invariance and Universality
- Author
-
Stanley, H. Eugene, Amaral, Luis A. Nunes, Gopikrishnan, Parameswaran, Plerou, Vasiliki, Rosenow, Bernd, and Takayasu, Hideki, editor
- Published
- 2002
- Full Text
- View/download PDF
46. The role of body mass in diet contiguity and food-web structure
- Author
-
Stouffer, Daniel B., Rezende, Enrico L., and Amaral, Luís A. Nunes
- Published
- 2011
- Full Text
- View/download PDF
47. Physically grounded approach for estimating gene expression from microarray data
- Author
-
McMullen, Patrick D., Morimoto, Richard I., Amaral, Luís A. Nunes, and Stanley, H. Eugene
- Published
- 2010
48. Price Dynamics in Political Prediction Markets
- Author
-
Majumder, Saikat Ray, Diermeier, Daniel, Rietz, Thomas A., Amaral, Luís A. Nunes, and Stanley, H. Eugene
- Published
- 2009
- Full Text
- View/download PDF
49. A Truer Measure of Our Ignorance
- Author
-
Amaral, Luis A. Nunes
- Published
- 2008
- Full Text
- View/download PDF
50. Extracting the Hierarchical Organization of Complex Systems
- Author
-
Sales-Pardo, Marta, Guimerà, Roger, Moreira, André A., and Amaral, Luís A. Nunes
- Published
- 2007
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.