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Objective Serious non-gastrointestinal-tract infections and food poisoning are caused by Bacillus cereus. Vaccination against B. cereus is very important. The aim of this study was to identify and analyze B and T cell epitopes for chromate transporter protein of the bacteria. Methods Multiple sequence alignment with the Clustal Omega method was used to identify conserved regions and Geneious Prime was used to produce a consensus sequence. T and B cell epitopes were predicted by various computational tools from the NetCTL and Immune Epitope Database (IEDB), respectively. Results Altogether, 6 HTL cells and 11 CTL epitopes were predicted. This vaccine's molecular docking is done with Patch Dock and LigPlot to verify interactions. The immune server (C-IMMSIM) was used to develop In silico immune response in order to assess the multi-epitope vaccine's immunogenic profile. Conclusion We designed universal vaccine against B. cereus responsible for food poisoning. The disease may be avoided with the aid of the proposed epitope-based vaccine.

Amylases take part with vital role in industries such as food, fermentation; starch processing, textile and paper etc. Increasing amylases demand, high nutrient expenditure and environmental pollution have forced to utilize agro-industrial residues as a low-cost feedstock for enzyme production. In present study, three soil samples were collected from agro-industrial waste dumping areas in District Faisalabad. Ten thermophilic bacterial isolates were separated at 55 °C on the basis of colonial morphology, three isolates (F6, F11, F17) showed prominent zone of clearance applying iodine test on starch agar plates. Bacterial isolate F-11 showed highest amylase activity with DNS method and molecularly identified through 16S RNA sequencing as Bacillus sp. with Accession number MH917294. Four unconventional food wastes (banana, lemon, mango and potato) pretreated with 0.8% sulphuric acid concentrations taking 1000 g/L weight released the highest sugars contents and phenolic components. Maximum amylase activity i.e. 29.23 mg/ml was achieved in mango waste at, 40 °C, with pH 6.0 and 0.17% nitrogenous source adding 8% inoculum size (2 days old) using Response Surface Methodology (RSM) for optimization. Crude amylase confirmed its efficiency in starch hydrolysis that suggested it as potential candidate for application in starch industries.

For a fungal pathogen to successfully infect, colonize and spread inside a susceptible host, it must have overcome the host immune responses. The early recognition of the fungal pathogen-associated molecular patterns (PAMPS) by the host’s pattern recognition receptors (PRRs) results in the establishment of anti-fungal immunity. Although, our immune system has evolved several processes to combat these pathogens both at the innate and adaptive immune levels. These organisms have developed various escape strategies to evade the recognition by the host\'s innate immune components and thus interfering with host immune mechanisms. In this chapter, we will summarize the major PRRs involved in sensing fungal PAMPS and most importantly the fungal tactics to escape the host\'s innate immune surveillance and protective mechanisms.

The emergence of coronavirus disease 2019 (COVID-19) pandemic in Wuhan city, China at the end of 2019 made it urgent to identify the origin of the causal pathogen and its molecular evolution, to appropriately design an effective vaccine. This study analyzes the evolutionary background of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2 or SARS-2) in accordance with its close relative SARS-CoV (SARS-1), which was emerged in 2002. A comparative genomic and proteomic study was conducted on SARS-2, SARS-1, and Middle East respiratory syndrome coronavirus (MERS), which was emerged in 2012. In silico analysis inferred the genetic variability among the tested viruses. The SARS-1 genome harbored 11 genes encoding 12 proteins, while SARS-2 genome contained only 10 genes encoding for 10 proteins. MERS genome contained 11 genes encoding 11 proteins. The analysis also revealed a slight variation in the whole genome size of SARS-2 comparing to its siblings resulting from sequential insertions and deletions (indels) throughout the viral genome particularly ORF1AB, spike, ORF10 and ORF8. The effective indels were observed in the gene encoding the spike protein that is responsible for viral attachment to the angiotensin-converting enzyme 2 (ACE2) cell receptor and initiating infection. These indels are responsible for the newly emerging COVID-19 variants αCoV, βCoV, γCoV and δCoV. Nowadays, few effective COVID-19 vaccines developed based on spike (S) glycoprotein were approved and become available worldwide. Currently available vaccines can relatively prevent the spread of COVID-19 and suppress the disease. The traditional (killed or attenuated virus vaccine and antibody-based vaccine) and innovated vaccine production technologies (RNA- and DNA-based vaccines and viral vectors) are summarized in this review. We finally highlight the most common questions related to COVID-19 disease and the benefits of getting vaccinated.

The present study was carried out to evaluate the effects of different fungal species on the metal uptake from paper sludge by Hemarthria compressa L. Paper sludge (PS) in various concentrations (0, 30% and 60%) were used with four treatments of two fungal species (F0 = Control, F1 = Aspergillus niger, F2 = Trichoderma pseudokoningii, F3 = A. niger + T. pseudokoningii). Paper sludge as rooting medium steadily influenced growth and physio-biochemical attributes of H. compressa in F0. Results revealed discrete variations in growth attributes with different PS concentrations and each fungal treatment. The maximum damages in ionic homeostasis (Na+, K+, Ca2+, Mg2+) due to PS toxicity were evident in parallel with declined chlorophyll concentration. The highest growth, total chlorophyll and biomass of the plants were observed when PS was treated with combined fungal strains (F3). Translocation factor decreased with F3 that is indicative of changes in Cd, Pb, and Cu movement to shoot from root. The plants with combined fungal treatment also showed greater catalase (CAT), superoxide dismutase (SOD), and peroxidase (POD) activity. Ions, such as Ca, Mg, and Na, also increased gradually with combined fungal treatment. The correlation matrix displayed a close association among diverse fungal and PS levels with multiple plant attributes. PCA-Biplot confirmed the outcome of correlational analyses among different characters of H. compressa. The combined fungal mediate the extraction of heavy metals from the paper sludge by H. compressa recommends the high accumulation of heavy metal (HM) and possible reutilization of metal free sludge as a fertilizer, for application in cultivated fields. Furthermore, the effects of fungal species on HM attenuation in PS are linear and can be used in different habitats. Advancement in such research work will also be helpful in understanding the mechanisms and enhancing the ability of other native microbes to remediate metals.

Pathogenic infestations are significant threats to vegetable yield, and have become an urgent problem to be solved. Rhizoctonia solani is one of the worst fungi affecting tomato crops, reducing yield in some regions. It is a known fact that plants have their own defense against such infestations, however, it is unclear whether any exogenous material can help plants against infestation. Therefore, we performed greenhouse experiments to evaluate the impacts of R. solani on 15- and 30-day old tomato plants after fungal infestation, and estimated the antifungal activity of nanoparticles (NPs) against the pathogen. We observed severe pathogenic impacts on the above-ground tissues of tomato plants which would affect plant physiology and crop production. Pathogenic infection reduced total chlorophyll and anthocyanin contents, which subsequently disturbed plant physiology. Further, total phenolic contents (TPC), total flavonoid contents (TFC), and malondialdehyde (MDA) contents were significantly increased in pathogen treatments. Constitutively, enhanced activities were estimated for catalase (CAT), superoxide dismutase (SOD), and ascorbate peroxidase (APX) in response to reactive oxygen species (ROS)in pathogen-treated plants. Moreover, pathogenesis-related genes, namely, chitinase, plant glutathione S-transferase (GST), phenylalanine ammonia-lyase (PAL1), pathogenesis-related protein (PR12), and pathogenesis-related protein (PR1) were evaluated, with significant differences between treated and control plants. In vitro and greenhouse antifungal activity of silver nanoparticles (Ag NPs), chitosan nanoparticles, and Ag NPs/CHI NPs composites and plant health was studied using transmission electron microscopy (TEM) and Fourier transform infrared (FTIR) spectrophotometry. We found astonishing results, namely, that Ag and CHI have antifungal activities against R. solani. Overall, plant health was much improved following treatment with Ag NPs/CHI NPs composites. In order to manage R. solani pathogenicity and improve tomato health, Ag/CHI NPs composites could be used infield as well as on commercial levels based on recommendations. However, there is an urgent need to first evaluate whether these NP composites have any secondary impacts on human health or the environment.

Resistance to antibiotics is on the rise, and its indiscriminate usage has resulted in human and animal management constraints. In the research for an innovative treatment to diminish antimicrobial resistance, lactic acid bacteria (LAB) throw light on diminishing this problem in public health. As a result, this paper looked at the efficacy of LAB isolates and their active metabolites to combat pathogens, reduce antibiotic use in clinical settings, and explore the anticancer potential of 8 strains of LAB isolated from dairy products. Antifungal and antibacterial potential of LAB isolates against selected crop pathogenic fungi and food pathogenic bacteria had been estimated. Results revealed that all isolates exert antioxidant efficacy relating to DPPH, NO scavenging ability, reducing power, superoxide anion, hydroxyl radical, and anti-lipid peroxidation potential. Additionally, 12B isolate exert the highest anticancer upshot with IC

Environmental stresses hamper the growth and development of plants drastically, limiting their yield to considerable extent. Stresses alter normal metabolism and induce generation of toxic effects which ultimately downregulate growth and productivity. Environmental stresses hamper photosynthesis, mineral uptake and assimilation, and damage major cellular structures and their functioning. Soil microbes include a range of organisms that establish association with the plants and among the beneficial and more explored ones are arbuscular mycorrhizal fungi (AMF) and plant growth promoting rhizobacteria (PGPR). Both AMF and PGPR are believed to enhance plant growth by mediating several benefits to hosts. Mineral solubilization and availability, water content maintenance, modulation of root morphology and physiology, regulation of enzyme activity and sequestration of toxic ions, metals etc. are some of the key functions attributed to these beneficial microbes. The positive role of these microbes have been confirmed through molecular studies also. Their involvement in strengthening the tolerance mechanisms through upregulation of the antioxidant defense pathway, increased osmolyte accumulation, etc. have been well established. This chapter discusses the role of beneficial microbes, mainly AMF and PGPR, in improving the stress tolerance in plants focusing the relevant reports.

The hypersensitive response (HR) is a defense action against pathogen ingression. Typically, HR is predictable with the appearance of the dead, brown cells along with visible lesions. Although death during HR can be limited to the cells in direct contact with pathogens, yet cell death can also spread away from the infection site. The variety in morphologies of plant cell death proposes involvement of different pathways for triggering HR. It is considered that, despite the differences, HR in plants performs the resembling functions like that of animal programmed cell death (PCD) for confining pathogen progression. HR, in fact, crucially initiates systemic signals for activation of defense in distal plant parts that ultimately results in systemic acquired resistance (SAR). Therefore, HR can be separated from other local immune actions/responses at the infection site. HR comprises of serial events inclusive of transcriptional reprograming, Ca2+ influx, oxidative bursts and phyto-hormonal signaling. Although a lot of work has been done on HR in plants but many questions regarding mechanisms and consequences of HRs remain unaddressed.We have summarized the mechanistic roles and cellular events of plant cells during HR in defense regulation. Roles of different genes during HR have been discussed to clarify genetic control of HR in plants. Generally existing ambiguities about HR and programmed cell death at the reader level has been addressed.

This article provides useful information for understanding the specific role of microbes in the pollutant removal process in floating treatment wetlands (FTWs). The current literature is collected and organized to provide an insight into the specific role of microbes toward plants and pollutants. Several aspects are discussed, such as important components of FTWs, common bacterial species, rhizospheric and endophytes bacteria, and their specific role in the pollutant removal process. The roots of plants release oxygen and exudates, which act as a substrate for microbial growth. The bacteria attach themselves to the roots and form biofilms to get nutrients from the plants. Along the plants, the microbial community also influences the performance of FTWs. The bacterial community contributes to the removal of nitrogen, phosphorus, toxic metals, hydrocarbon, and organic compounds. Plant–microbe interaction breaks down complex compounds into simple nutrients, mobilizes metal ions, and increases the uptake of pollutants by plants. The inoculation of the roots of plants with acclimatized microbes may improve the phytoremediation potential of FTWs. The bacteria also encourage plant growth and the bioavailability of toxic pollutants and can alleviate metal toxicity.

Experiments were conducted under laboratory, greenhouse and field conditions to investigate the possible utilization of plant extracts to control Sphaerotheca fuliginea, the causal pathogen of squash powdery mildew. Six air dried plant materials, i.e. anise seeds, blue gum leaves, chamomile flowers, cumin seeds, marjoram herb and thyme herb, as well as three organic solvents (acetone, methanol, and petroleum ether) were used for extraction. Methanolic extracts (ME) of blue gum and thyme gave significant decrease in spore germination of S. fuliginea. Treating detached leaves with the organic solvents extracts (OSE) as preventive and curative treatments proved that the first was more effective than the second in controlling the disease. Spraying with (ME) of blue gum and thyme decreased powdery mildew disease incidence and increased total phenols. Also, spraying squash in greenhouse and field with the (OSE) as preventive and curative treatments gave sufficient control to the disease in most cases. However, the efficiency of the methanolic extract of thyme herb in controlling the disease as curative treatment was always comparable to that of the fungicide Afugan. DOI: 10.5901/mjss.2013.v4n11p39