183 results on '"Anatoliy I. Yashin"'
Search Results
2. The association between rs6859 in NECTIN2 gene and Alzheimer’s disease is partly mediated by pTau
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Aravind Lathika Rajendrakumar, Konstantin G. Arbeev, Olivia Bagley, Anatoliy I. Yashin, and Svetlana Ukraintseva
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Alzheimer’s disease ,NECTIN2 gene ,rs6859 ,pTau-181 ,Causal Mediation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
IntroductionEmerging evidence suggests a connection between vulnerability to infections and Alzheimer’s disease (AD). The nectin cell adhesion molecule 2 (NECTIN2) gene coding for a membrane component of adherens junctions is involved in response to infections, and its single nucleotide polymorphism (SNP) rs6859 was significantly associated with AD risk in several human cohorts. It is unclear, however, how exactly rs6859 influences the development of AD pathology. The aggregation of hyperphosphorylated tau protein (pTau) is a key pathological feature of neurodegeneration in AD, which may be induced by infections, among other factors, and potentially influenced by genes involved in both AD and vulnerability to infections, such as NECTIN2.Materials and methodsWe conducted a causal mediation analysis (CMA) on a sample of 708 participants in the Alzheimer’s disease Neuroimaging Initiative (ADNI). The relationship between rs6859 and Alzheimer’s disease (AD), with AD (yes/no) as the outcome and pTau-181 levels in the cerebrospinal fluid (CSF) acting as a mediator in this association, was assessed. Adjusted estimates from the probit and linear regression models were used in the CMA model, where an additive model considered an increase in dosage of the rs6859 A allele (AD risk factor).ResultsThe increase in dose of allele A of the SNP rs6859 resulted in about 0.144 increase per standard deviation (SD) of pTau-181 (95% CI: 0.041, 0.248, p < 0.01). When included together in the probit model, the change in A allele dose and each standard deviation change in pTau-181 predicted 6.84% and 9.79% higher probabilities for AD, respectively. In the CMA, the proportion of the average mediated effect was 17.05% and was higher for the risk allele homozygotes (AA), at 19.40% (95% CI: 6.20%, 43.00%, p < 0.01). The sensitivity analysis confirmed the evidence of a robust mediation effect.ConclusionThis study reported a new potential causal relationship between pTau-181 and AD. We found that the association between rs6859 in the NECTIN2 gene and AD is partly mediated by pTau-181 levels in CSF. The rest of this association may be mediated by other factors. Our finding sheds light on the complex interplay between genetic susceptibility, protein aggregation, and neurodegeneration in AD. Further research, using other biomarkers, is needed to uncover the remaining mechanisms of the association between the NECTIN2 gene and AD.
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- 2024
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3. Traffic-related air pollution and APOE4 can synergistically affect hippocampal volume in older women: new findings from UK Biobank
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Vladimir A. Popov, Svetlana V. Ukraintseva, Hongzhe Duan, Anatoliy I. Yashin, and Konstantin G. Arbeev
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hippocampal volume ,neurodegeneration ,air pollution ,TRAP ,major road ,APOE ,Medicine - Abstract
A growing research body supports the connection between neurodegenerative disorders, including Alzheimer's disease (AD), and traffic-related air pollution (TRAP). However, the underlying mechanisms are not well understood. A deeper investigation of TRAP effects on hippocampal volume (HV), a major biomarker of neurodegeneration, may help clarify these mechanisms. Here, we explored TRAP associations with the HV in older participants of the UK Biobank (UKB), taking into account the presence of APOE e4 allele (APOE4), the strongest genetic risk factor for AD. Exposure to TRAP was approximated by the distance of the participant's main residence to the nearest major road (DNMR). The left/right HV was measured by magnetic resonance imaging (MRI) in cubic millimeters (mm3). Analysis of variance (ANOVA), Welch test, and regression were used to examine statistical significance. We found significant interactions between DNMR and APOE4 that influenced HV. Specifically, DNMR
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- 2024
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4. The SNP rs6859 in NECTIN2 gene is associated with underlying heterogeneous trajectories of cognitive changes in older adults
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Aravind Lathika Rajendrakumar, Konstantin G. Arbeev, Olivia Bagley, Anatoliy I. Yashin, Svetlana Ukraintseva, and for the Alzheimer’s Disease Neuroimaging Initiative
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MMSE ,NECTIN2 ,rs6859 ,Heterogeneity ,Trajectory analysis ,Latent class ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Functional decline associated with dementia, including in Alzheimer’s disease (AD), is not uniform across individuals, and respective heterogeneity is not yet fully explained. Such heterogeneity may in part be related to genetic variability among individuals. In this study, we investigated whether the SNP rs6859 in nectin cell adhesion molecule 2 (NECTIN2) gene (a major risk factor for AD) influences trajectories of cognitive decline in older participants from the Alzheimer’s Disease Neuroimaging Initiative (ADNI). Methods We retrospectively analyzed records on 1310 participants from the ADNI database for the multivariate analysis. We used longitudinal measures of Mini-Mental State Examination (MMSE) scores in participants, who were cognitively normal, or having AD, or other cognitive deficits to investigate the trajectories of cognitive changes. Multiple linear regression, linear mixed models and latent class analyses were conducted to investigate the association of the SNP rs6859 with MMSE. Results The regression coefficient per one allele dose of the SNP rs6859 was independently associated with MMSE in both cross-sectional (-2.23, p
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- 2024
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5. Prior infections are associated with smaller hippocampal volume in older women
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Vladimir A. Popov, Svetlana Ukraintseva, Hongzhe Duan, Konstantin G. Arbeev, and Anatoliy I. Yashin
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hippocampus ,infection ,verbal ,visual-spatial ,memory ,aging ,Medicine - Abstract
Accumulating evidence suggests that infections may play a major role in Alzheimer's disease (AD), however, mechanism is unclear, as multiple pathways may be involved. One possibility is that infections could contribute to neurodegeneration directly by promoting neuronal death. We explored relationships between history of infections and brain hippocampal volume (HV), a major biomarker of neurodegeneration, in a subsample of the UK Biobank (UKB) participants. Infectious disease diagnoses were based on ICD10 codes. The left/right HV was measured by the magnetic resonance imaging (MRI) in cubic millimeters and normalized. Analysis of variance (ANOVA), Welch test, and regression were used to examine statistical significance. We found that HV was significantly lower in women aged 60–75, as well as 65–80, years, with history of infections, compared to same age women without such history. The effect size increased with age faster for the left vs. right HV. Results for males didn't reach statistical significance. Results of our study support a major role of adult infections in neurodegeneration in women. The detrimental effect of infections on HV became stronger with age, in line with declining resilience and increasing brain vulnerability to stressors due to aging. The faster increase in the effect size observed for the left vs. right HV may indicate that female verbal memory degrades faster over time than visual-spatial memory. The observed sex difference may reflect a higher vulnerability of female brain to infection-related factors, which in turn may contribute to a higher risk of AD in women compared to men.
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- 2024
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6. Interactions between genes involved in physiological dysregulation and axon guidance: role in Alzheimer’s disease
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Konstantin G. Arbeev, Svetlana Ukraintseva, Olivia Bagley, Hongzhe Duan, Deqing Wu, Igor Akushevich, Eric Stallard, Alexander Kulminski, Kaare Christensen, Mary F. Feitosa, Jeffrey R. O’Connell, Daniel Parker, Heather Whitson, and Anatoliy I. Yashin
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aging ,Alzheimer’s disease ,physiological dysregulation ,resilience ,axon guidance ,synaptic function ,Genetics ,QH426-470 - Abstract
Dysregulation of physiological processes may contribute to Alzheimer’s disease (AD) development. We previously found that an increase in the level of physiological dysregulation (PD) in the aging body is associated with declining resilience and robustness to major diseases. Also, our genome-wide association study found that genes associated with the age-related increase in PD frequently represented pathways implicated in axon guidance and synaptic function, which in turn were linked to AD and related traits (e.g., amyloid, tau, neurodegeneration) in the literature. Here, we tested the hypothesis that genes involved in PD and axon guidance/synapse function may jointly influence onset of AD. We assessed the impact of interactions between SNPs in such genes on AD onset in the Long Life Family Study and sought to replicate the findings in the Health and Retirement Study. We found significant interactions between SNPs in the UNC5C and CNTN6, and PLXNA4 and EPHB2 genes that influenced AD onset in both datasets. Associations with individual SNPs were not statistically significant. Our findings, thus, support a major role of genetic interactions in the heterogeneity of AD and suggest the joint contribution of genes involved in PD and axon guidance/synapse function (essential for the maintenance of complex neural networks) to AD development.
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- 2023
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7. Epidemiology of geographic disparities in heart failure among US older adults: a Medicare-based analysis
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Bin Yu, Igor Akushevich, Arseniy P. Yashkin, Anatoliy I. Yashin, H. Kim Lyerly, and Julia Kravchenko
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Heart failure ,Geographic disparities ,Time trend ,Mortality ,Incidence-based mortality ,Incidence ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background There are prominent geographic disparities in the life expectancy (LE) of older US adults between the states with the highest (leading states) and lowest (lagging states) LE and their causes remain poorly understood. Heart failure (HF) has been proposed as a major contributor to these disparities. This study aims to investigate geographic disparities in HF outcomes between the leading and lagging states. Methods The study was a secondary data analysis of HF outcomes in older US adults aged 65+, using Center for Disease Control and Prevention sponsored Wide-Ranging Online Data for Epidemiologic Research (CDC WONDER) database and a nationally representative 5% sample of Medicare beneficiaries over 2000–2017. Empiric estimates of death certificate-based mortality from HF as underlying cause of death (CBM-UCD)/multiple cause of death (CBM-MCD); HF incidence-based mortality (IBM); HF incidence, prevalence, and survival were compared between the leading and lagging states. Cox regression was used to investigate the effect of residence in the lagging states on HF incidence and survival. Results Between 2000 and 2017, HF mortality rates (per 100,000) were higher in the lagging states (CBM-UCD: 188.5–248.6; CBM-MCD: 749.4–965.9; IBM: 2656.0–2978.4) than that in the leading states (CBM-UCD: 79.4–95.6; CBM-MCD: 441.4–574.1; IBM: 1839.5–2138.1). Compared to their leading counterparts, lagging states had higher HF incidence (2.9–3.9% vs. 2.2–2.9%), prevalence (15.6–17.2% vs. 11.3–13.0%), and pre-existing prevalence at age 65 (5.3–7.3% vs. 2.8–4.1%). The most recent rates of one- (77.1% vs. 80.4%), three- (59.0% vs. 60.7%) and five-year (45.8% vs. 49.8%) survival were lower in the lagging states. A greater risk of HF incidence (Adjusted Hazards Ratio, AHR [95%CI]: 1.29 [1.29–1.30]) and death after HF diagnosis (AHR: 1.12 [1.11–1.13]) was observed for populations in the lagging states. The study also observed recent increases in CBMs and HF incidence, and declines in HF prevalence, prevalence at age 65 and survival with a decade-long plateau stage in IBM in both leading and lagging states. Conclusion There are substantial geographic disparities in HF mortality, incidence, prevalence, and survival across the U.S.: HF incidence, prevalence at age 65 (age of Medicare enrollment), and survival of patients with HF contributed most to these disparities. The geographic disparities and the recent increase in incidence and decline in survival underscore the importance of HF prevention strategies.
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- 2022
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8. Does the Chronic Stress of Everyday Discrimination or Race Itself Better Predict AD Onset Risk?
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Katharine M. Gary PhD, Masudul Hoque MS, Arseniy P. Yashkin PhD, Anatoliy I. Yashin PhD, ScD, and Igor Akushevich PhD
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Geriatrics ,RC952-954.6 - Abstract
Using evidence from the Health and Retirement Study, we explore racial disparities in Alzheimer’s Disease (AD) onset risk. From a stress process perspective, there is substantial evidence in the literature that everyday discrimination is a chronic strain for Black individuals that acts as a social determinant of illness. However, few studies have examined specific relationships between this social stressor, race, and AD onset risk. Using Cox Proportional Hazard Models, we examined racial differences in exposure and vulnerability to everyday discrimination. Findings suggest that everyday discrimination predicts AD onset risk, and Black individuals experience more frequent exposure to everyday discrimination as a chronic strain. However, contrary to the stress process model, Black respondents were not more vulnerable to the effect of everyday discrimination on AD onset risk. Racial bias from medical professionals during the diagnostic process and mortality selection bias may explain this effect. Overall, the results of this study provide further evidence that discrimination is a key factor in predicting AD while also considering that many racial minorities with high rates of this type of social stress may not receive an unbiased diagnosis and/or survive to late life to develop AD.
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- 2022
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9. Telomere-length dependent T-cell clonal expansion: A model linking ageing to COVID-19 T-cell lymphopenia and mortality
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James J. Anderson, Ezra Susser, Konstantin G. Arbeev, Anatoliy I. Yashin, Daniel Levy, Simon Verhulst, and Abraham Aviv
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Telomeres ,T-cells ,COVID-19 ,SARS-CoV-2 ,Ageing ,Vaccines ,Medicine ,Medicine (General) ,R5-920 - Abstract
Summary: Background: Severe COVID-19 T-cell lymphopenia is more common among older adults and entails poor prognosis. Offsetting the decline in T-cell count during COVID-19 demands fast and massive T-cell clonal expansion, which is telomere length (TL)-dependent. Methods: We developed a model of TL-dependent T-cell clonal expansion capacity with age and virtually examined the relation of T-cell clonal expansion with COVID-19 mortality in the general population. Findings: The model shows that an individual with average hematopoietic cell TL (HCTL) at age twenty years maintains maximal T-cell clonal expansion capacity until the 6th decade of life when this capacity rapidly declines by more than 90% over the next ten years. The collapse in the T-cell clonal expansion capacity coincides with the steep increase in COVID-19 mortality with age. Interpretation: Short HCTL might increase vulnerability of many older adults, and some younger individuals with inherently short HCTL, to COVID-19 T-cell lymphopenia and severe disease. Funding: A full list of funding bodies that contributed to this study can be found in the Acknowledgements section.
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- 2022
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10. Genome-wide analysis of genetic predisposition to Alzheimer’s disease and related sex disparities
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Alireza Nazarian, Anatoliy I. Yashin, and Alexander M. Kulminski
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Alzheimer’s disease ,Sex disparities ,Genome-wide association study ,Meta-analysis ,Gene-based analysis ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Alzheimer’s disease (AD) is the most common cause of dementia in the elderly and the sixth leading cause of death in the United States. AD is mainly considered a complex disorder with polygenic inheritance. Despite discovering many susceptibility loci, a major proportion of AD genetic variance remains to be explained. Methods We investigated the genetic architecture of AD in four publicly available independent datasets through genome-wide association, transcriptome-wide association, and gene-based and pathway-based analyses. To explore differences in the genetic basis of AD between males and females, analyses were performed on three samples in each dataset: males and females combined, only males, or only females. Results Our genome-wide association analyses corroborated the associations of several previously detected AD loci and revealed novel significant associations of 35 single-nucleotide polymorphisms (SNPs) outside the chromosome 19q13 region at the suggestive significance level of p
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- 2019
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11. Composite Measure of Physiological Dysregulation as a Predictor of Mortality: The Long Life Family Study
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Konstantin G. Arbeev, Olivia Bagley, Svetlana V. Ukraintseva, Hongzhe Duan, Alexander M. Kulminski, Eric Stallard, Deqing Wu, Kaare Christensen, Mary F. Feitosa, Bharat Thyagarajan, Joseph M. Zmuda, and Anatoliy I. Yashin
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physiological dysregulation ,statistical distance ,mortality ,prediction ,Long Life Family Study ,deficits index ,Public aspects of medicine ,RA1-1270 - Abstract
Biological aging results in changes in an organism that accumulate over age in a complex fashion across different regulatory systems, and their cumulative effect manifests in increased physiological dysregulation (PD) and declining robustness and resilience that increase risks of health disorders and death. Several composite measures involving multiple biomarkers that capture complex effects of aging have been proposed. We applied one such approach, the Mahalanobis distance (DM), to baseline measurements of various biomarkers (inflammation, hematological, diabetes-associated, lipids, endocrine, renal) in 3,279 participants from the Long Life Family Study (LLFS) with complete biomarker data. We used DM to estimate the level of PD by summarizing information about multiple deviations of biomarkers from specified “norms” in the reference population (here, LLFS participants younger than 60 years at baseline). An increase in DM was associated with significantly higher mortality risk (hazard ratio per standard deviation of DM: 1.42; 95% confidence interval: [1.3, 1.54]), even after adjustment for a composite measure summarizing 85 health-related deficits (disabilities, diseases, less severe symptoms), age, and other covariates. Such composite measures significantly improved mortality predictions especially in the subsample of participants from families enriched for exceptional longevity (the areas under the receiver operating characteristic curves are 0.88 vs. 0.85, in models with and without the composite measures, p = 2.9 × 10−5). Sensitivity analyses confirmed that our conclusions are not sensitive to different aspects of computational procedures. Our findings provide the first evidence of association of PD with mortality and its predictive performance in a unique sample selected for exceptional familial longevity.
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- 2020
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12. Pleiotropic Meta-Analysis of Age-Related Phenotypes Addressing Evolutionary Uncertainty in Their Molecular Mechanisms
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Alexander M. Kulminski, Yury Loika, Jian Huang, Konstantin G. Arbeev, Olivia Bagley, Svetlana Ukraintseva, Anatoliy I. Yashin, and Irina Culminskaya
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genetic association studies ,pleiotropy ,age-related phenotypes ,genetic heterogeneity ,aging ,health span ,Genetics ,QH426-470 - Abstract
Age-related phenotypes are characterized by genetic heterogeneity attributed to an uncertain role of evolution in establishing their molecular mechanisms. Here, we performed univariate and pleiotropic meta-analyses of 24 age-related phenotypes dealing with such evolutionary uncertainty and leveraging longitudinal information. Our analysis identified 237 novel single nucleotide polymorphisms (SNPs) in 199 loci with phenotype-specific (61 SNPs) and pleiotropic (176 SNPs) associations and replicated associations for 160 SNPs in 68 loci in a modest sample of 26,371 individuals from five longitudinal studies. Most pleiotropic associations (65.3%, 115 of 176 SNPs) were impacted by heterogeneity, with the natural-selection—free genetic heterogeneity as its inevitable component. This pleiotropic heterogeneity was dominated (93%, 107 of 115 SNPs) by antagonistic genetic heterogeneity, a phenomenon that is characterized by antagonistic directions of genetic effects for directly correlated phenotypes. Genetic association studies of age-related phenotypes addressing the evolutionary uncertainty in establishing their molecular mechanisms have power to substantially improve the efficiency of the analyses. A dominant form of heterogeneous pleiotropy, antagonistic genetic heterogeneity, provides unprecedented insight into the genetic origin of age-related phenotypes and side effects in medical care that is counter-intuitive in medical genetics but naturally expected when molecular mechanisms of age-related phenotypes are not due to direct evolutionary selection.
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- 2019
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13. How Well Does the Family Longevity Selection Score Work: A Validation Test Using the Utah Population Database
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Liubov S. Arbeeva, Heidi A. Hanson, Konstantin G. Arbeev, Alexander M. Kulminski, Eric Stallard, Svetlana V. Ukraintseva, Deqing Wu, Robert M. Boudreau, Michael A. Province, Ken R. Smith, and Anatoliy I. Yashin
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exceptional survival ,familial longevity ,Long Life Family Study ,Utah population database ,family longevity selection score ,Public aspects of medicine ,RA1-1270 - Abstract
The Family Longevity Selection Score (FLoSS) was used to select families for the Long Life Family Study (LLFS) but has never been validated in other populations. The goal of this paper is to validate how well the FLoSS-based selection procedure works in an independent dataset. In this paper, we computed FLoSS using the lifespan data of 234,155 individuals from a large comprehensive genealogically-based resource, the Utah Population Database (UPDB), born between 1779 and 1910 with mortality follow-up through 2012–2013. Computations of FLoSS in a specific year (1980) confirmed the survival advantage of the “exceptional” sibships (defined by LLFS FLoSS threshold, FLoSS ≥ 7). We found that the subsample of the UPDB participants born after 1900 who were from the “exceptional” sibships had survival curves similar to that of the US participants from the LLFS probands' generation. Comparisons between the offspring of parents with “exceptional” and “ordinary” survival showed the survival advantage of the “exceptional” offspring. Investigators seeking to explain the extent genetics and environment contribute to exceptional survival will benefit from the use of exceptionally long-lived individuals and their relatives. Appropriate ranking of families by survival exceptionality and their availability for the purposes of providing genetic and phenotypic data is critical for selecting participants into such studies. This study validated the FLoSS as selection criteria in family longevity studies using UPDB.
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- 2018
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14. Corrigendum: Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases
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Liang He, Yelena Kernogitski, Irina Kulminskaya, Yury Loika, Konstantin G. Arbeev, Elena Loiko, Olivia Bagley, Matt Duan, Arseniy Yashkin, Svetlana V. Ukraintseva, Mikhail Kovtun, Anatoliy I. Yashin, and Alexander M. Kulminski
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pleiotropic analysis ,age-related traits ,CVDs ,genetic association study ,mediation analysis ,age-dependent effects ,Genetics ,QH426-470 - Published
- 2018
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15. cophesim: a comprehensive phenotype simulator for testing novel association methods [version 1; referees: 2 approved]
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Ilya Y. Zhbannikov, Konstantin G. Arbeev, and Anatoliy I. Yashin
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Bioinformatics ,Genomics ,Medicine ,Science - Abstract
Simulation is important in evaluating novel methods when input data is not easily obtainable or specific assumptions are needed. We present cophesim, a software to add the phenotype to generated genotype data prepared with a genetic simulator. The output of cophesim can be used as a direct input for different genome wide association study tools. cophesim is available from https://bitbucket.org/izhbannikov/cophesim.
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- 2017
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16. haploR: an R package for querying web-based annotation tools [version 2; referees: 2 approved, 1 approved with reservations]
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Ilya Y. Zhbannikov, Konstantin Arbeev, Svetlana Ukraintseva, and Anatoliy I. Yashin
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Bioinformatics ,Medicine ,Science - Abstract
We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.
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- 2017
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17. Pleiotropic Meta-Analyses of Longitudinal Studies Discover Novel Genetic Variants Associated with Age-Related Diseases
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Liang He, Yelena Kernogitski, Irina Kulminskaya, Yury Loika, Konstantin G. Arbeev, Elena Loiko, Olivia Bagley, Matt Duan, Arseniy Yashkin, Svetlana V. Ukraintseva, Mikhail Kovtun, Anatoliy I. Yashin, and Alexander M. Kulminski
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pleiotropic analysis ,age-related traits ,CVDs ,genetic association study ,mediation analysis ,age-dependent effects ,Genetics ,QH426-470 - Abstract
Age-related diseases may result from shared biological mechanisms in intrinsic processes of aging. Genetic effects on age-related diseases are often modulated by environmental factors due to their little contribution to fitness or are mediated through certain endophenotypes. Identification of genetic variants with pleiotropic effects on both common complex diseases and endophenotypes may reveal potential conflicting evolutionary pressures and deliver new insights into shared genetic contribution to healthspan and lifespan. Here, we performed pleiotropic meta-analyses of genetic variants using five NIH-funded datasets by integrating univariate summary statistics for age-related diseases and endophenotypes. We investigated three groups of traits: (1) endophenotypes such as blood glucose, blood pressure, lipids, hematocrit, and body mass index, (2) time-to-event outcomes such as the age-at-onset of diabetes mellitus (DM), cancer, cardiovascular diseases (CVDs) and neurodegenerative diseases (NDs), and (3) both combined. In addition to replicating previous findings, we identify seven novel genome-wide significant loci (< 5e-08), out of which five are low-frequency variants. Specifically, from Group 2, we find rs7632505 on 3q21.1 in SEMA5B, rs460976 on 21q22.3 (1 kb from TMPRSS2) and rs12420422 on 11q24.1 predominantly associated with a variety of CVDs, rs4905014 in ITPK1 associated with stroke and heart failure, rs7081476 on 10p12.1 in ANKRD26 associated with multiple diseases including DM, CVDs, and NDs. From Group 3, we find rs8082812 on 18p11.22 and rs1869717 on 4q31.3 associated with both endophenotypes and CVDs. Our follow-up analyses show that rs7632505, rs4905014, and rs8082812 have age-dependent effects on coronary heart disease or stroke. Functional annotation suggests that most of these SNPs are within regulatory regions or DNase clusters and in linkage disequilibrium with expression quantitative trait loci, implying their potential regulatory influence on the expression of nearby genes. Our mediation analyses suggest that the effects of some SNPs are mediated by specific endophenotypes. In conclusion, these findings indicate that loci with pleiotropic effects on age-related disorders tend to be enriched in genes involved in underlying mechanisms potentially related to nervous, cardiovascular and immune system functions, stress resistance, inflammation, ion channels and hematopoiesis, supporting the hypothesis of shared pathological role of infection, and inflammation in chronic age-related diseases.
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- 2016
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18. Why does melanoma metastasize into the brain? Genes with pleiotropic effects might be the key
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Anatoliy I. Yashin, Deqing eWu, Konstantin G. Arbeev, Alexander M. Kulminski, Eric eStallard, and Svetlana V. Ukraintseva
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blood brain barrier ,tight junction ,LLFS ,melanoma genetics ,GNA12 gene ,Genetics ,QH426-470 - Published
- 2013
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19. Effect of the APOE Polymorphism and Age Trajectories of Physiological Variables on Mortality: Application of Genetic Stochastic Process Model of Aging
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Konstantin G. Arbeev, Svetlana V. Ukraintseva, Alexander M. Kulminski, Igor Akushevich, Liubov S. Arbeeva, Irina V. Culminskaya, Deqing Wu, and Anatoliy I. Yashin
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Medicine ,Science - Abstract
We evaluated effects of the APOE polymorphism (carriers versus noncarriers of the e4 allele) and age trajectories of total cholesterol (CH) and diastolic blood pressure (DBP) on mortality risk in the Framingham Heart Study (original cohort). We found that long-lived carriers and noncarriers have different average age trajectories and long-lived individuals have consistently higher levels and less steep declines at old ages compared to short-lived individuals. We applied the stochastic process model of aging aimed at joint analyses of genetic and nongenetic subsamples of longitudinal data and estimated different aging-related characteristics for carriers and noncarriers which otherwise cannot be evaluated from data. We found that such characteristics differ in carriers and noncarriers: (1) carriers have better adaptive capacity than noncarriers in case of CH, whereas for DBP the opposite situation is observed; (2) mean allostatic trajectories are higher in carriers and they differ from “optimal” trajectories minimizing mortality risk; (3) noncarriers have lower baseline mortality rates at younger ages but they increase faster than those for carriers resulting in intersection at the oldest ages. Such observations strongly indicate the presence of a genetic component in respective aging-related mechanisms. Such differences may contribute to patterns of allele- and sex-specific mortality rates.
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- 2012
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20. Applying Stochastic Process Model to Imputation of Censored Longitudinal Data.
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Ilya Zhbannikov, Konstantin G. Arbeev, and Anatoliy I. Yashin
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- 2018
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21. Exogenous exposures shape genetic predisposition to lipids, Alzheimer’s, and coronary heart disease in the MLXIPL gene locus
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Yury Loika, Elena Loiko, Fan Feng, Eric Stallard, Anatoliy I. Yashin, Konstantin Arbeev, Allison L. Kuipers, Mary F. Feitosa, Michael A. Province, and Alexander M. Kulminski
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Aging ,Cell Biology - Published
- 2023
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22. stpm: an R package for stochastic process model.
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Ilya Zhbannikov, Konstantin G. Arbeev, Igor Akushevich, Eric Stallard, and Anatoliy I. Yashin
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- 2017
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23. Differences in Risk of Alzheimer's Disease Following Later-Life Traumatic Brain Injury in Veteran and Civilian Populations
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Arseniy P. Yashkin, Galina A. Gorbunova, Larry Tupler, Anatoliy I. Yashin, Murali Doraiswamy, and Igor Akushevich
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Rehabilitation ,Physical Therapy, Sports Therapy and Rehabilitation ,Neurology (clinical) - Published
- 2023
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24. haploR: an R package for querying web-based annotation tools [version 2; referees: 3 approved]
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Ilya Y. Zhbannikov, Konstantin Arbeev, Svetlana Ukraintseva, and Anatoliy I. Yashin
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Software Tool Article ,Articles ,Bioinformatics ,R ,databases ,genomics ,genetic variants ,genome annotation ,data mining - Abstract
We developed haploR, an R package for querying web based genome annotation tools HaploReg and RegulomeDB. haploR gathers information in a data frame which is suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.
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- 2017
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25. Analysis of Time Trends in Alzheimer’s Disease and Related Dementias Using Partitioning Approach
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Arseniy P. Yashkin, Igor Akushevich, Julia Kravchenko, and Anatoliy I. Yashin
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Male ,Time Factors ,Disease ,Medicare ,Article ,Insurance Claim Review ,Alzheimer Disease ,medicine ,Humans ,Dementia ,IBM ,Aged ,Aged, 80 and over ,Relative survival ,Time trends ,business.industry ,General Neuroscience ,Incidence (epidemiology) ,Medicare beneficiary ,General Medicine ,medicine.disease ,United States ,Psychiatry and Mental health ,Clinical Psychology ,Female ,Geriatrics and Gerontology ,business ,Demography ,Rate of growth - Abstract
Background: Understanding the dynamics of epidemiologic trends in Alzheimer’s disease (AD) and related dementias (ADRD) and their epidemiologic causes is vital to providing important insights into reducing the burden associated with these conditions. Objective: To model the time trends in age-adjusted AD/ADRD prevalence and incidence-based mortality (IBM), and identify the main causes of the changes in these measures over time in terms of interpretable epidemiologic quantities. Methods: Trend decomposition was applied to a 5%sample of Medicare beneficiaries between 1991 and 2017. Results: Prevalence of AD was increasing between 1992 and 2011 and declining thereafter, while IBM increased over the study period with a significant slowdown in its rate of growth from 2011 onwards. For ADRD, prevalence and IBM increased through 2014 prior to taking a downwards turn. The primary determinant responsible for declines in prevalence and IBM was the deceleration in the increase and eventual decrease in incidence rates though changes in relative survival began to affect the overall trends in prevalence/IBM in a noticeable manner after 2008. Other components showed only minor effects. Conclusion: The prevalence and IBM of ADRD is expected to continue to decrease. The directions of these trends for AD are not clear because AD incidence, the main contributing component, is decreasing but at a decreasing rate suggesting a possible reversal. Furthermore, emerging treatments may contribute through their effects on survival. Improving ascertainment of AD played an important role in trends of AD/ADRD over the 1991-2009/10 period but this effect has exhausted itself by 2017.
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- 2021
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26. haploR: an R-package for querying web-based annotation tools [version 1; referees: 3 approved with reservations]
- Author
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Ilya Y. Zhbannikov, Konstantin Arbeev, and Anatoliy I. Yashin
- Subjects
Software Tool Article ,Articles ,Bioinformatics ,R ,databases ,genomics ,genetic variants ,genome annotation ,data mining - Abstract
There exists a set of web-based tools for integration and exploring information linked to annotated genetic variants. We developed haploR, an R-package for querying such web-based genome annotation tools (currently implementing on HaploReg and RegulomeDB) and gathering information in a format suitable for downstream bioinformatic analyses. This will facilitate post-genome wide association studies streamline analysis for rapid discovery and interpretation of genetic associations.
- Published
- 2017
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27. Medical Cost Trajectories and Onsets of Cancer and NonCancer Diseases in US Elderly Population.
- Author
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Igor Akushevich, Julia Kravchenko, Lucy Akushevich, Svetlana V. Ukraintseva, Konstantin G. Arbeev, and Anatoliy I. Yashin
- Published
- 2011
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28. Multidimensional Stochastic Process Model and its Applications to Analysis of Longitudinal Data with Genetic Information.
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Ilya Zhbannikov, Konstantin G. Arbeev, and Anatoliy I. Yashin
- Published
- 2016
- Full Text
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29. Genetics of physiological dysregulation: findings from the long life family study using joint models
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Eric Stallard, Kaare Christensen, Joseph M. Zmuda, Anatoliy I. Yashin, Svetlana V. Ukraintseva, Hongzhe Duan, Bharat Thyagarajan, Olivia Bagley, Deqing Wu, Konstantin G. Arbeev, Alexander M. Kulminski, and Joseph H. Lee
- Subjects
Male ,Aging ,Single-nucleotide polymorphism ,Genome-wide association study ,Protein Serine-Threonine Kinases ,Biology ,Models, Biological ,Polymorphism, Single Nucleotide ,Long life family study ,Synapse ,Joint models ,Long Life Family Study ,Neoplasms ,Neural Pathways ,Biological neural network ,Guanine Nucleotide Exchange Factors ,Humans ,SNP ,Gene Regulatory Networks ,Longitudinal Studies ,Mortality ,Chronobiology Phenomena ,Genetics ,Neuronal Plasticity ,joint models ,Hazard ratio ,Cell Biology ,mortality ,Synaptic plasticity ,Female ,Joints ,Axon guidance ,Mahalanobis distance ,Biomarkers ,Research Paper ,Genome-Wide Association Study - Abstract
Recently, Mahalanobis distance (DM) was suggested as a statistical measure of physiological dysregulation in aging individuals. We constructed DM variants using sets of biomarkers collected at the two visits of the Long Life Family Study (LLFS) and performed joint analyses of longitudinal observations of DM and follow-up mortality in LLFS using joint models. We found that DM is significantly associated with mortality (hazard ratio per standard deviation: 1.31 [1.16, 1.48] to 2.22 [1.84, 2.67]) after controlling for age and other covariates. GWAS of random intercepts and slopes of DM estimated from joint models found a genome-wide significant SNP (rs12652543, p=7.2 × 10-9) in the TRIO gene associated with the slope of DM constructed from biomarkers declining in late life. Review of biological effects of genes corresponding to top SNPs from GWAS of DM slopes revealed that these genes are broadly involved in cancer prognosis and axon guidance/synapse function. Although axon growth is mainly observed during early development, the axon guidance genes can function in adults and contribute to maintenance of neural circuits and synaptic plasticity. Our results indicate that decline in axons' ability to maintain complex regulatory networks may potentially play an important role in the increase in physiological dysregulation during aging.
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- 2020
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30. Understanding Alzheimer’s disease in the context of aging: Findings from applications of stochastic process models to the Health and Retirement Study
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Konstantin G. Arbeev, Olivia Bagley, Arseniy P. Yashkin, Hongzhe Duan, Igor Akushevich, Svetlana V. Ukraintseva, and Anatoliy I. Yashin
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Aging ,Developmental Biology - Published
- 2023
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31. Underlying the mechanisms of changes in cancer prevalence among the U.S. Medicare beneficiaries: contributions of incidence, survival, and ascertainment at early stages
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Igor Akushevich, Arseniy Yashkin, Mikhail Kovtun, Anatoliy I. Yashin, and Julia Kravchenko
- Abstract
Purpose: To quantitatively evaluate contributions of trends in incidence, relative survival, and stage at diagnosis to the dynamics in the prevalence of major cancers (lung, prostate, colon, breast, urinary bladder, ovaries, stomach, pancreas, esophagus, kidney, liver, and skin melanoma) among older U.S. adults age 65+. Methods: Trend partitioning was applied to the Surveillance, Epidemiology, and End Results Program data for 1973-2016. Results: Growth of cancer prevalence in older adults decelerated or even decreased over time for all studied cancers due to decreasing incidence and improving survival for most of cancers, with a smaller contribution of the stage at cancer diagnosis. Changes in prevalence of cancers of lung, colon, stomach, and breast were predominantly due to decreasing incidence, increasing survival and more frequent diagnoses at earlier stages. Changes in prevalence of some other cancers demonstrated adverse trends such as decreasing survival in localized and regional stages (urinary bladder and ovarian) and growing impact of late-stage diagnoses (esophageal cancer). Conclusion: While decelerating or decreasing prevalence of many cancers were due to a beneficial combination of decreasing incidence and increasing survival, there are cancers for which decelerating prevalence is due to the lack of improvement in their stage-specific survival and/or increasing frequency of diagnosis at advanced stages. Overall, if the observed trends persist, it is likely that cancer burden due to its prevalence in older U.S. population will be lower than it was projected in earlier studies.
- Published
- 2022
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32. rqt: an R package for gene-level meta-analysis.
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Ilya Y. Zhbannikov, Konstantin G. Arbeev, and Anatoliy I. Yashin
- Published
- 2017
- Full Text
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33. Roles of interacting stress-related genes in lifespan regulation: insights for translating experimental findings to humans
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Anatoliy I, Yashin, Deqing, Wu, Konstantin, Arbeev, Arseniy P, Yashkin, Igor, Akushevich, Olivia, Bagley, Matt, Duan, and Svetlana, Ukraintseva
- Subjects
Integrated stress response ,GxG interactions ,GCN2/EIF2AK4 and CHOP/DDI3T genes ,amino acids starvation ,health and lifespan ,Article - Abstract
Aim: Experimental studies provided numerous evidence that caloric/dietary restriction may improve health and increase the lifespan of laboratory animals, and that the interplay among molecules that sense cellular stress signals and those regulating cell survival can play a crucial role in cell response to nutritional stressors. However, it is unclear whether the interplay among corresponding genes also plays a role in human health and lifespan. Methods: Literature about roles of cellular stressors have been reviewed, such as amino acid deprivation, and the integrated stress response (ISR) pathway in health and aging. Single nucleotide polymorphisms (SNPs) in two candidate genes (GCN2/EIF2AK4 and CHOP/DDIT3) that are closely involved in the cellular stress response to amino acid starvation, have been selected using information from experimental studies. Associations of these SNPs and their interactions with human survival in the Health and Retirement Study data have been estimated. The impact of collective associations of multiple interacting SNP pairs on survival has been evaluated, using a recently developed composite index: the SNP-specific Interaction Polygenic Risk Score (SIPRS). Results: Significant interactions have been found between SNPs from GCN2/EIF2AK4 and CHOP/DDI3T genes that were associated with survival 85+ compared to survival between ages 75 and 85 in the total sample (males and females combined) and in females only. This may reflect sex differences in genetic regulation of the human lifespan. Highly statistically significant associations of SIPRS [constructed for the rs16970024 (GCN2/EIF2AK4) and rs697221 (CHOP/DDIT3)] with survival in both sexes also been found in this study. Conclusion: Identifying associations of the genetic interactions with human survival is an important step in translating the knowledge from experimental to human aging research. Significant associations of multiple SNPxSNP interactions in ISR genes with survival to the oldest old age that have been found in this study, can help uncover mechanisms of multifactorial regulation of human lifespan and its heterogeneity.
- Published
- 2021
34. Polygenic risk score for disability and insights into disability-related molecular mechanisms
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Anatoliy I. Yashin, Alireza Nazarian, Alexander M. Kulminski, Yury Loika, Stanislav A. Kolpakov, Irina Culminskaya, Chansuk Kang, and Eric Stallard
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Male ,Multifactorial Inheritance ,Aging ,Genotype ,Single-nucleotide polymorphism ,Bioinformatics ,Polymorphism, Single Nucleotide ,Disability Evaluation ,Risk Factors ,Humans ,Medicine ,Allele ,Alleles ,Aged ,System development ,Geroscience ,business.industry ,Middle Aged ,Molecular medicine ,Genetic architecture ,Phenotype ,Trait ,Original Article ,Female ,Polygenic risk score ,Geriatrics and Gerontology ,business ,Genome-Wide Association Study - Abstract
Late life disability is a highly devastating condition affecting 20% or more of persons aged 65 years and older in the USA; it is an important determinant of acute medical and long-term care costs which represent a growing burden on national economies. Disability is a multifactorial trait that contributes substantially to decline of health/wellbeing. Accordingly, gaining insights into the genetics of disability could help in identifying molecular mechanisms of this devastating condition and age-related processes contributing to a large fraction of specific geriatric conditions, concordantly with geroscience. We performed a genome-wide association study of disability in a sample of 24,068 subjects from five studies with 12,550 disabled individuals. We identified 30 promising disability-associated polymorphisms in 19 loci at p < 10(−4); four of them attained suggestive significance, p < 10(−5). In contrast, polygenic risk scores aggregating effects of minor alleles of independent SNPs that were adversely or beneficially associated with disability showed highly significant associations in meta-analysis, p = 3.13 × 10(−45) and p = 5.60 × 10(−23), respectively, and were replicated in each study. The analysis of genetic pathways, related diseases, and biological functions supported the connections of genes for the identified SNPs with disabling and age-related conditions primarily through oxidative/nitrosative stress, inflammatory response, and ciliary signaling. We identified musculoskeletal system development, maintenance, and regeneration as important components of gene functions. The beneficial and adverse gene sets may be differently implicated in the development of musculoskeletal-related disability with the beneficial set characterized, e.g., by regulation of chondrocyte proliferation and bone formation, and the adverse set by inflammation and bone loss. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s11357-019-00125-8) contains supplementary material, which is available to authorized users.
- Published
- 2019
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35. Partitioning of time trends in prevalence and mortality of lung cancer
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Julia Kravchenko, Fang Fang, Arseniy P. Yashkin, Igor Akushevich, and Anatoliy I. Yashin
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Male ,Statistics and Probability ,Lung Neoplasms ,Epidemiology ,Prevalence ,Improved survival ,Article ,Sex Factors ,Humans ,Medicine ,Lung cancer ,Neoplasm Staging ,Models, Statistical ,Lung ,Relative survival ,business.industry ,Time trends ,Incidence ,Incidence (epidemiology) ,medicine.disease ,Survival Rate ,medicine.anatomical_structure ,Adenocarcinoma ,Female ,business ,SEER Program ,Demography - Abstract
Background Time trends of lung cancer prevalence and mortality are the result of three competing processes: changes in the incidence rate, stage-specific survival, and ascertainment at early stages. Improvements in these measures act concordantly to improve disease-related mortality, but push the prevalence rate in opposite directions making a qualitative interpretation difficult. The goal of this paper is to evaluate the relative contributions of these components to changes in lung cancer prevalence and mortality. Methods Partitioning of prevalence and mortality trends into their components using SEER data for 1973-2013. Results The prevalence of lung cancer increases for females and decreases for males. In 1998, the former was due to increased incidence (45%-50% of total trend), improved survival (40%-45%), and increased ascertainment at early stages (10%-15%). In males, a rapidly declining incidence rate overpowered the effects of survival and ascertainment resulting in an overall decrease in prevalence over time. Trends in lung cancer mortality are determined by incidence during 1993-2002 with noticeable contribution of survival after 2002. Conclusion Lung cancer incidence was the main driving force behind trends in prevalence and mortality. Improved survival played essential role from 2000 onwards. Trends in stage ascertainment played a small but adverse role. Our results suggest that further improvement in lung cancer mortality can be achieved through advances in early stage ascertainment, especially for males, and that in spite of success in treatment, adenocarcinoma continues to exhibit adverse trends (especially in female incidence) and its role among other histology-specific lung cancers will increase in the near future.
- Published
- 2019
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36. Interactions Between Genes From Aging Pathways May Influence Human Lifespan and Improve Animal to Human Translation
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Svetlana V. Ukraintseva, Konstantin G. Arbeev, Alexander M. Kulminski, Matt Duan, Igor Akushevich, Olivia Bagley, Galina Gorbunova, Deqing Wu, Arseniy P. Yashkin, and Anatoliy I. Yashin
- Subjects
Genetics ,Senescence ,genetic interactions ,Candidate gene ,aging genes ,aging pathways ,QH301-705.5 ,Single-nucleotide polymorphism ,Translation (biology) ,Cell Biology ,stress response ,Brief Research Report ,Biology ,Cell and Developmental Biology ,animal to human translation ,human lifespan ,Epistasis ,statistical epistasis ,Biology (General) ,Gene ,PI3K/AKT/mTOR pathway ,Developmental Biology ,Insulin-like growth factor 1 receptor ,heterogeneity of longevity - Abstract
A major goal of aging research is identifying genetic targets that could be used to slow or reverse aging – changes in the body and extend limits of human lifespan. However, majority of genes that showed the anti-aging and pro-survival effects in animal models were not replicated in humans, with few exceptions. Potential reasons for this lack of translation include a highly conditional character of genetic influence on lifespan, and its heterogeneity, meaning that better survival may be result of not only activity of individual genes, but also gene–environment and gene–gene interactions, among other factors. In this paper, we explored associations of genetic interactions with human lifespan. We selected candidate genes from well-known aging pathways (IGF1/FOXO growth signaling, P53/P16 apoptosis/senescence, and mTOR/SK6 autophagy and survival) that jointly decide on outcomes of cell responses to stress and damage, and so could be prone to interactions. We estimated associations of pairwise statistical epistasis between SNPs in these genes with survival to age 85+ in the Atherosclerosis Risk in Communities study, and found significant (FDR < 0.05) effects of interactions between SNPs in IGF1R, TGFBR2, and BCL2 on survival 85+. We validated these findings in the Cardiovascular Health Study sample, with P < 0.05, using survival to age 85+, and to the 90th percentile, as outcomes. Our results show that interactions between SNPs in genes from the aging pathways influence survival more significantly than individual SNPs in the same genes, which may contribute to heterogeneity of lifespan, and to lack of animal to human translation in aging research.
- Published
- 2021
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37. Short Telomeres and a T-Cell Shortfall in COVID-19: The Aging Effect
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Daniel Levy, Konstantin G. Arbeev, James J. Anderson, Ezra Susser, Anatoliy I. Yashin, Simon Verhulst, and Abraham Aviv
- Subjects
Adult ,Aging ,2019-20 coronavirus outbreak ,Coronavirus disease 2019 (COVID-19) ,T-Lymphocytes ,T cell ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,T cells ,Biology ,Article ,Young Adult ,Immunology and Inflammation ,Lymphopenia ,medicine ,Humans ,Aging effect ,Young adult ,Aged ,Hematopoietic cell ,COVID-19 ,Biological Sciences ,Telomere ,Telomeres ,medicine.anatomical_structure ,Immunology - Abstract
The slow pace of global vaccination and the rapid emergence of SARS-CoV-2 variants suggest recurrent waves of COVID-19 in coming years. Therefore, understanding why deaths from COVID-19 are highly concentrated among older adults is essential for global health. Severe COVID-19 T-cell lymphopenia is more common among older adults, and it entails poor prognosis. Much about the primary etiology of this form of lymphopenia remains unknown, but regardless of its causes, offsetting the decline in T-cell count during SARS-CoV-2 infection demands fast and massive T-cell clonal expansion, which is telomere length (TL)-dependent. We have built a model that captures the effect of age-dependent TL shortening in hematopoietic cells and its effect on T-cell clonal expansion capacity. The model shows that an individual with average hematopoietic cell TL (HCTL) at age twenty years maintains maximal T-cell clonal expansion capacity until the 6th decade of life when this capacity plummets by more than 90% over the next ten years. The collapse coincides with the steep increase in COVID-19 mortality with age. HCTL metrics may thus explain the vulnerability of older adults to COVID-19. That said, the wide inter-individual variation in HCTL across the general population means that some younger adults with inherently short HCTL might be at risk of severe COVID-19 lymphopenia and mortality from the disease.Significance StatementDeclining immunity with advancing age is a general explanation for the increased mortality from COVID-19 among older adults. This mortality far exceeds that from viral illnesses such as the seasonal influenza, and it thus requires specific explanations. One of these might be diminished ability with age to offset the development of severe T-cell lymphopenia (a low T-cell count in the blood) that often complicates COVID-19. We constructed a model showing that age-dependent shortening of telomeres might constrain the ability of T-cells of some older COVID-19 patients to undertake the massive proliferation required to clear the virus that causes the infection. The model predicts that individuals with short telomeres, principally seniors, might be at a higher risk of death from COVID-19.
- Published
- 2021
- Full Text
- View/download PDF
38. Geographic disparities in mortality from Alzheimer's disease and related dementias
- Author
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Igor Akushevich, Anatoliy I. Yashin, Julia Kravchenko, and Arseniy P. Yashkin
- Subjects
Male ,Databases, Factual ,business.industry ,Mortality rate ,Ethnic group ,Disease ,Comorbidity ,United States ,Article ,Total mortality ,03 medical and health sciences ,0302 clinical medicine ,Alzheimer Disease ,Cause of Death ,Medicine ,Humans ,Female ,030212 general & internal medicine ,Death certificate ,Geriatrics and Gerontology ,business ,030217 neurology & neurosurgery ,Cause of death ,Demography ,Retrospective Studies - Abstract
Objectives The regions with highest and lowest Alzheimer's disease (AD) mortality across the United States at state/county levels were identified and their contribution to the differences in total mortality rates between these regions was evaluated. The disease, disease group, sex, race/ethnicity, and place-of-death-related inter-region differences that engender the disparity in mortality were quantitatively described. The hypothesis that inter-regional differences in filling out death certificates are a major contributor to differences in AD mortality was tested. Design Retrospective evaluation of death certificate data. Setting The United States. Participants Deceased US residents, 1999-2018. Methods Region-specific age-adjusted mortality rates and group-specific rate decomposition. Results The county clusters with the highest and lowest AD mortality rates were in Washington (WA) and New York (NY), respectively, with other notable high-mortality clusters on the border of Tennessee, Georgia, and Alabama as well as in North Dakota and South Dakota. These patterns were stable over the 1999-2018 period. AD had the highest contribution to total mortality difference between WA and NY (156%, higher in WA), in contrast circulatory diseases had a contribution of comparable magnitude (154%) but were higher in NY. Differences in cause-of-death certificate coding, either through coding of non-AD dementias, or other conditions accompanying a potential AD death could not account for differences in AD mortality between NY and WA. Conclusions Inter-regional differences in filling out death certificates were not a major contributor to variation in AD mortality between the regions with the highest and lowest rates. The respective mitigation of the effects of neural and circulatory diseases and several other high-impact conditions would not negate the disparity in mortality between NY and WA.
- Published
- 2021
39. Roles of interacting stress related genes in lifespan regulation: insights for translating experimental findings to humans
- Author
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Igor Akushevich, Konstantin G. Arbeev, Svetlana V. Ukraintseva, Deqing Wu, Matt Duan, Olivia Bagley, Arseniy P. Yashkin, and Anatoliy I. Yashin
- Subjects
Genetics ,Candidate gene ,Cellular stress response ,Stressor ,SNP ,Integrated stress response ,Single-nucleotide polymorphism ,CHOP ,Biology ,Gene - Abstract
Aim Experimental studies provided numerous evidence that caloric/dietary restriction may improve health and increase the lifespan of laboratory animals, and that the interplay among molecules that sense cellular stress signals and those regulating cell survival can play a crucial role in cell response to nutritional stressors. However, it is unclear whether the interplay among corresponding genes also plays a role in human health and lifespan. Methods Literature about roles of cellular stressors have been reviewed, such as amino acid deprivation, and the integrated stress response (ISR) pathway in health and aging. Single nucleotide polymorphisms (SNPs) in two candidate genes (GCN2/EIF2AK4 and CHOP/DDIT3) that are closely involved in the cellular stress response to amino acid starvation, have been selected using information from experimental studies. Associations of these SNPs and their interactions with human survival in the Health and Retirement Study data have been estimated. The impact of collective associations of multiple interacting SNP pairs on survival has been evaluated, using a recently developed composite index: the SNP-specific Interaction Polygenic Risk Score (SIPRS). Results Significant interactions have been found between SNPs from GCN2/EIF2AK4 and CHOP/DDI3T genes that were associated with survival 85+ compared to survival between ages 75 and 85 in the total sample (males and females combined) and in females only. This may reflect sex differences in genetic regulation of the human lifespan. Highly statistically significant associations of SIPRS [constructed for the rs16970024 (GCN2/EIF2AK4) and rs697221 (CHOP/DDIT3)] with survival in both sexes also been found in this study. Conclusion Identifying associations of the genetic interactions with human survival is an important step in translating the knowledge from experimental to human aging research. Significant associations of multiple SNPxSNP interactions in ISR genes with survival to the oldest old age that have been found in this study, can help uncover mechanisms of multifactorial regulation of human lifespan and its heterogeneity.
- Published
- 2021
- Full Text
- View/download PDF
40. Lack of consensus on an aging biology paradigm? A global survey reveals an agreement to disagree, and the need for an interdisciplinary framework
- Author
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Otávio de Toledo Nóbrega, Jean-François Lemaître, Svetlana V. Ukraintseva, Luigi Ferrucci, Ulrich Anglas, Andreas Simm, Claudio Franceschi, Marcel G. M. Olde Rikkert, Alistair M. Senior, Véronique Legault, Joris Deelen, Tamas Fulop, Jeremy M. Van Raamsdonk, Sylvie Rheault, Sonja K. Soo, Graham Pawelec, Frédérik Dufour, Andrea B. Maier, Robert Ziman, Daniela Frasca, Bertrand Friguet, Pierrette Gaudreau, Annika Traa, Brian K. Kennedy, Vadim N. Gladyshev, Vera Gorbunova, Anne M. Bronikowski, Quentin Vanhaelen, Efstathios S. Gonos, Jacek M. Witkowski, Anatoliy I. Yashin, Gerardo Ferbeyre, Thomas Liontis, Philipp Gut, Mingxin Liu, Guang-Hui Liu, Alan A. Cohen, Mikhail Ivanchenko, AMS - Ageing & Vitality, Neuromechanics, Biodémographie évolutive, Département écologie évolutive [LBBE], Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Laboratoire de Biométrie et Biologie Evolutive - UMR 5558 (LBBE), Université de Lyon-Université de Lyon-Institut National de Recherche en Informatique et en Automatique (Inria)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), and Ecologie et évolution des populations
- Subjects
0301 basic medicine ,Aging ,Biomedical Research ,Consensus ,Alzheimer`s disease Donders Center for Medical Neuroscience [Radboudumc 1] ,Systematic survey ,media_common.quotation_subject ,[SDV]Life Sciences [q-bio] ,Epidemiology of aging ,Evolution of ageing ,Article ,03 medical and health sciences ,0302 clinical medicine ,Humans ,media_common ,Aged ,Philosophy of science ,Geriatrics gerontology ,Aging mechanisms ,Evolution of aging ,Agreement ,Epistemology ,Biology of aging ,Aging interventions ,030104 developmental biology ,Aging paradigm ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
At a recent symposium on aging biology, a debate was held as to whether or not we know what biological aging is. Most of the participants were struck not only by the lack of consensus on this core question, but also on many basic tenets of the field. Accordingly, we undertook a systematic survey of our 71 participants on key questions that were raised during the debate and symposium, eliciting 37 responses. The results confirmed the impression from the symposium: there is marked disagreement on the most fundamental questions in the field, and little consensus on anything other than the heterogeneous nature of aging processes. Areas of major disagreement included what participants viewed as the essence of aging, when it begins, whether aging is programmed or not, whether we currently have a good understanding of aging mechanisms, whether aging is or will be quantifiable, whether aging will be treatable, and whether many non-aging species exist. These disagreements lay bare the urgent need for a more unified and cross-disciplinary paradigm in the biology of aging that will clarify both areas of agreement and disagreement, allowing research to proceed more efficiently. We suggest directions to encourage the emergence of such a paradigm.
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- 2020
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41. Interplay between stress-related genes may influence Alzheimer's disease development: The results of genetic interaction analyses of human data
- Author
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Svetlana V. Ukraintseva, Matt Duan, Arseniy P. Yashkin, Igor Akushevich, Olivia Bagley, Deqing Wu, Konstantin G. Arbeev, and Anatoliy I. Yashin
- Subjects
0301 basic medicine ,Aging ,Multifactorial Inheritance ,Single-nucleotide polymorphism ,Disease ,Biology ,Protein Serine-Threonine Kinases ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Amyloid beta-Protein Precursor ,0302 clinical medicine ,Alzheimer Disease ,Risk Factors ,Humans ,Association (psychology) ,Gene ,Genetic association ,Genetics ,Epistasis, Genetic ,030104 developmental biology ,Multiple comparisons problem ,Epistasis ,Polygenic risk score ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Emerging evidence from experimental and clinical research suggests that stress-related genes may play key roles in AD development. The fact that genome-wide association studies were not able to detect a contribution of such genes to AD indicates the possibility that these genes may influence AD non-linearly, through interactions of their products. In this paper, we selected two stress-related genes (GCN2/EIF2AK4 and APP) based on recent findings from experimental studies which suggest that the interplay between these genes might influence AD in humans. To test this hypothesis, we evaluated the effects of interactions between SNPs in these two genes on AD occurrence, using the Health and Retirement Study data on white indidividuals. We found several interacting SNP-pairs whose associations with AD remained statistically significant after correction for multiple testing. These findings emphasize the importance of nonlinear mechanisms of polygenic AD regulation that cannot be detected in traditional association studies. To estimate collective effects of multiple interacting SNP-pairs on AD, we constructed a new composite index, called Interaction Polygenic Risk Score, and showed that its association with AD is highly statistically significant. These results open a new avenue in the analyses of mechanisms of complex multigenic AD regulation.
- Published
- 2020
42. Time trends in the prevalence of cancer and non-cancer diseases among older U.S. adults: Medicare-based analysis
- Author
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Anatoliy I. Yashin, Arseniy P. Yashkin, Igor Akushevich, and Julia Kravchenko
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Male ,Aging ,Pediatrics ,medicine.medical_specialty ,Population ,Prevalence ,Disease ,Medicare ,Biochemistry ,Article ,03 medical and health sciences ,Age Distribution ,0302 clinical medicine ,Endocrinology ,Neoplasms ,Diabetes mellitus ,Epidemiology ,Genetics ,medicine ,Humans ,Dementia ,030212 general & internal medicine ,education ,Molecular Biology ,Depression (differential diagnoses) ,Aged ,Aged, 80 and over ,education.field_of_study ,business.industry ,Limb fracture ,Cell Biology ,medicine.disease ,United States ,030220 oncology & carcinogenesis ,Chronic Disease ,Regression Analysis ,Female ,business ,Forecasting - Abstract
Longer lifespan is accompanied by a larger number of chronic diseases among older adults. Because of a growing proportion of older adults in the U.S., this brings the problem of age-related morbidity to the forefront as a major contributor to rising medical expenditures. We evaluated 15-year time trends (from 1998 to 2013) in the prevalence of 48 acute and chronic non-cancer diseases and cancers in older U.S. adults aged 65+ and estimated the annual percentage changes of these prevalence trends using SEER-Medicare and HRS-Medicare data. We found that age-adjusted prevalence of cancers of kidney, pancreas, and melanoma, as well as diabetes, renal disease, limb fracture, depression, anemia, weight deficiency, dementia/Alzheimer's disease, drug/medications abuse and several other diseases/conditions increased over time. Conversely, prevalence of myocardial infarction, heart failure, cardiomyopathy, pneumonia/influenza, peptic ulcer, and gastrointestinal bleeding, among others, decreased over time. There are also diseases whose prevalence did not change substantially over time, e.g., a group of fast progressing cancers and rheumatoid arthritis. Analysis of trends of multiple diseases performed simultaneously within one study design with focus on the same time interval and the same population for all diseases allowed us to provide insight into the epidemiology of these conditions and identify the most alarming and/or unexpected trends and trade-offs. The obtained results can be used for health expenditures planning for growing sector of older adults in the U.S.
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- 2018
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43. Hidden heterogeneity in Alzheimer's disease: Insights from genetic association studies and other analyses
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Anatoliy I. Yashin, Ilya Y. Zhbannikov, Mikhail Kovtun, Igor Akushevich, Eric Stallard, Matt Duan, Arseniy P. Yashkin, Alexander M. Kulminski, Deqing Wu, Svetlana V. Ukraintseva, Konstantin G. Arbeev, Fang Fang, and Irina Culminskaya
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Male ,0301 basic medicine ,Apolipoprotein E ,Aging ,Pathology ,medicine.medical_specialty ,Genome-wide association study ,Disease ,Type 2 diabetes ,Biology ,Bioinformatics ,Logistic regression ,Polymorphism, Single Nucleotide ,Biochemistry ,Article ,Genetic Heterogeneity ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Framingham Heart Study ,Alzheimer Disease ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Longitudinal Studies ,Molecular Biology ,Genetic association ,Cell Biology ,Health and Retirement Study ,medicine.disease ,Logistic Models ,030104 developmental biology ,Case-Control Studies ,Female ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
Despite evident success in clarifying many important features of Alzheimer's disease (AD) the efficient methods of its prevention and treatment are not yet available. The reasons are likely to be the fact that AD is a multifactorial and heterogeneous health disorder with multiple alternative pathways of disease development and progression. The availability of genetic data on individuals participated in longitudinal studies of aging health and longevity, as well as on participants of cross-sectional case-control studies allow for investigating genetic and non-genetic connections with AD and to link the results of these analyses with research findings obtained in clinical, experimental, and molecular biological studies of this health disorder. The objective of this paper is to perform GWAS of AD in several study populations and investigate possible roles of detected genetic factors in developing AD hallmarks and in other health disorders. The data collected in the Framingham Heart Study (FHS), Cardiovascular Health Study (CHS), Health and Retirement Study (HRS) and Late Onset Alzheimer's Disease Family Study (LOADFS) were used in these analyses. The logistic regression and Cox's regression were used as statistical models in GWAS. The results of analyses confirmed strong associations of genetic variants from well-known genes APOE, TOMM40, PVRL2 (NECTIN2), and APOC1 with AD. Possible roles of these genes in pathological mechanisms resulting in development of hallmarks of AD are described. Many genes whose connection with AD was detected in other studies showed nominally significant associations with this health disorder in our study. The evidence on genetic connections between AD and vulnerability to infection, as well as between AD and other health disorders, such as cancer and type 2 diabetes, were investigated. The progress in uncovering hidden heterogeneity in AD would be substantially facilitated if common mechanisms involved in development of AD, its hallmarks, and AD related chronic conditions were investigated in their mutual connection.
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- 2018
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44. 'Physiological Dysregulation' as a Promising Measure of Robustness and Resilience in Studies of Aging and a New Indicator of Preclinical Disease
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Svetlana V. Ukraintseva, Konstantin G. Arbeev, Alan A. Cohen, Anatoliy I. Yashin, Alexander M. Kulminski, Ilya Y. Zhbannikov, and Olivia Bagley
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Adult ,Male ,0301 basic medicine ,Oncology ,Aging ,medicine.medical_specialty ,Health Status ,media_common.quotation_subject ,Longevity ,Disease ,03 medical and health sciences ,0302 clinical medicine ,Framingham Heart Study ,Internal medicine ,medicine ,Humans ,Longitudinal Studies ,Proxy (statistics) ,Aged ,Proportional Hazards Models ,media_common ,Aged, 80 and over ,business.industry ,Robustness (evolution) ,Articles ,Biodemography ,Middle Aged ,Adaptation, Physiological ,United States ,3. Good health ,030104 developmental biology ,Health ,The Journal of Gerontology: Biological Sciences ,Biomarker (medicine) ,Female ,Psychological resilience ,Physiological markers ,Mahalanobis distance ,Geriatrics and Gerontology ,business ,Biomarkers ,030217 neurology & neurosurgery - Abstract
Recently suggested novel implementation of the statistical distance measure (DM) for evaluating “physiological dysregulation” (PD) in aging individuals (based on measuring deviations of multiple biomarkers from baseline or normal physiological states) allows reducing high-dimensional biomarker space into a single PD estimate. Here we constructed DM using biomarker profiles from FRAMCOHORT (Framingham Heart Study) and CHS (Cardiovascular Health Study) Research Materials obtained from the NHLBI Biologic Specimen and Data Repository Information Coordinating Center, and estimated effect of PD on total survival, onset of unhealthy life (proxy for “robustness”) and survival following the onset of unhealthy life (proxy for “resilience”). We investigated relationships between PD and declines in stress resistance and adaptive capacity not directly observed in data. PD was more strongly associated with the onset of unhealthy life than with survival after disease suggesting that declines in robustness and resilience with age may have overlapping as well as distinct mechanisms. We conclude that multiple deviations of physiological markers from their normal states (reflected in higher PD) may contribute to increased vulnerability to many diseases and precede their clinical manifestation. This supports potential use of PD in health care as a preclinical indicator of transition from healthy to unhealthy state.
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- 2018
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45. Identifying the causes of the changes in the prevalence patterns of diabetes in older U.S. adults: A new trend partitioning approach
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Julia Kravchenko, Fang Fang, Konstantin G. Arbeev, Arseniy P. Yashkin, Anatoliy I. Yashin, Igor Akushevich, and Frank A. Sloan
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Younger age ,Databases, Factual ,endocrine system diseases ,Endocrinology, Diabetes and Metabolism ,Improved survival ,030209 endocrinology & metabolism ,Medicare ,Article ,03 medical and health sciences ,Health services ,0302 clinical medicine ,Endocrinology ,Diabetes mellitus ,Prevalence ,Internal Medicine ,medicine ,Humans ,030212 general & internal medicine ,Epidemics ,Aged ,Models, Statistical ,business.industry ,Incidence ,Incidence (epidemiology) ,Policy maker ,nutritional and metabolic diseases ,medicine.disease ,United States ,Administrative claims ,Diabetes Mellitus, Type 2 ,business ,Demography - Abstract
Aims To identify how efforts to control the diabetes epidemic and the resulting changes in diabetes mellitus, type II (T2D) incidence and survival have affected the time-trend of T2D prevalence. Methods A newly developed method of trend decomposition was applied to a 5% sample of Medicare administrative claims filed between 1991 and 2012. Results Age-adjusted prevalence of T2D for adults age 65+ increased at an average annual percentage change of 2.31% between 1992 and 2012. Primary contributors to this trend were (in order of magnitude): improved survival at all ages, increased prevalence of T2D prior to age of Medicare eligibility, decreased incidence of T2D after age of Medicare eligibility. Conclusions Health services supported by the Medicare system, coupled with improvements in medical technology and T2D awareness efforts provide effective care for individuals age 65 and older. However, policy maker attention should be shifted to the prevention of T2D in younger age groups to control the increase in prevalence observed prior to Medicare eligibility.
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- 2018
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46. Genetics of Human Longevity From Incomplete Data: New Findings From the Long Life Family Study
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Thomas T. Perls, Konstantin G. Arbeev, Fang Fang, Anatoliy I. Yashin, Anne B. Newman, Ping An, Mary K. Wojczynski, Irma T. Elo, Deqing Wu, Kaare Christensen, Robert M. Boudreau, Svetlana V. Ukraintseva, Igor Akushevich, Eric Stallard, Olivia Bagley, Liubov Arbeeva, Stephen Thielke, Alexander M. Kulminski, and Michael A. Province
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Male ,0301 basic medicine ,Aging ,Denmark ,Lifespan prediction ,Muscle Proteins ,Genome-wide association study ,0302 clinical medicine ,Gene Frequency ,Mitochondrial Precursor Protein Import Complex Proteins ,rs1927465 ,Medicine ,Longitudinal Studies ,GWAS of human longevity ,media_common ,Aged, 80 and over ,Genetics ,Longevity ,Retinoic Acid 4-Hydroxylase ,Pedigree ,The Journal of Gerontology: Biological Sciences ,Female ,media_common.quotation_subject ,Nectins ,Single-nucleotide polymorphism ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,Apolipoproteins E ,Humans ,Allele frequency ,Gene ,Aged ,Apolipoprotein C-I ,Special design ,Chromosomes, Human, Pair 10 ,business.industry ,Calcium-Binding Proteins ,Membrane Proteins ,Membrane Transport Proteins ,Health and Retirement Study ,United States ,Logistic Models ,030104 developmental biology ,CYP26A1 ,Human longevity ,MYOF ,Geriatrics and Gerontology ,business ,Chromosomes, Human, Pair 19 ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
The special design of the Long Life Family Study provides a unique opportunity to investigate the genetics of human longevity by analyzing data on exceptional lifespans in families. In this article, we performed two series of genome wide association studies of human longevity which differed with respect to whether missing lifespan data were predicted or not predicted. We showed that the use of predicted lifespan is most beneficial when the follow-up period is relatively short. In addition to detection of strong associations of SNPs in APOE, TOMM40, NECTIN2, and APOC1 genes with longevity, we also detected a strong new association with longevity of rs1927465, located between the CYP26A1 and MYOF genes on chromosome 10. The association was confirmed using data from the Health and Retirement Study. We discuss the biological relevance of the detected SNPs to human longevity.
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- 2018
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47. A genetic stochastic process model for genome-wide joint analysis of biomarker dynamics and disease susceptibility with longitudinal data
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Konstantin G. Arbeev, Ilya Y. Zhbannikov, Anatoliy I. Yashin, Alexander M. Kulminski, and Liang He
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Male ,Risk ,0301 basic medicine ,endocrine system diseases ,Epidemiology ,Single-nucleotide polymorphism ,Genome-wide association study ,Disease ,Biology ,Polymorphism, Single Nucleotide ,01 natural sciences ,Article ,Body Mass Index ,010104 statistics & probability ,03 medical and health sciences ,Genetic variation ,Humans ,SNP ,Genetic Predisposition to Disease ,0101 mathematics ,Gene–environment interaction ,Genetics (clinical) ,Genetics ,Stochastic Processes ,Models, Statistical ,Models, Genetic ,Mechanism (biology) ,Computational Biology ,nutritional and metabolic diseases ,030104 developmental biology ,Diabetes Mellitus, Type 2 ,Biomarker (medicine) ,Female ,Gene-Environment Interaction ,Biomarkers ,Genome-Wide Association Study - Abstract
Unraveling the underlying biological mechanisms or pathways behind the effects of genetic variations on complex diseases remains one of the major challenges in the post-GWAS (where GWAS is genome-wide association study) era. To further explore the relationship between genetic variations, biomarkers, and diseases for elucidating underlying pathological mechanism, a huge effort has been placed on examining pleiotropic and gene-environmental interaction effects. We propose a novel genetic stochastic process model (GSPM) that can be applied to GWAS and jointly investigate the genetic effects on longitudinally measured biomarkers and risks of diseases. This model is characterized by more profound biological interpretation and takes into account the dynamics of biomarkers during follow-up when investigating the hazards of a disease. We illustrate the rationale and evaluate the performance of the proposed model through two GWAS. One is to detect single nucleotide polymorphisms (SNPs) having interaction effects on type 2 diabetes (T2D) with body mass index (BMI) and the other is to detect SNPs affecting the optimal BMI level for protecting from T2D. We identified multiple SNPs that showed interaction effects with BMI on T2D, including a novel SNP rs11757677 in the CDKAL1 gene (P = 5.77 × 10-7 ). We also found a SNP rs1551133 located on 2q14.2 that reversed the effect of BMI on T2D (P = 6.70 × 10-7 ). In conclusion, the proposed GSPM provides a promising and useful tool in GWAS of longitudinal data for interrogating pleiotropic and interaction effects to gain more insights into the relationship between genes, quantitative biomarkers, and risks of complex diseases.
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- 2017
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48. Interactions Between Genes From Aging Pathways Significantly Influence Risk of Alzheimer’s Disease
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Svetlana V. Ukraintseva, Konstantin G. Arbeev, Hongzhe Duan, Anatoliy I. Yashin, Mary F. Feitosa, Igor Akushevich, Eric Stallard, and Kaare Christensen
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Genetics ,Abstracts ,Biology of Aging ,Health (social science) ,Session 2880 (Poster) ,Disease ,Biology ,AcademicSubjects/SOC02600 ,Life-span and Life-course Studies ,Health Professions (miscellaneous) ,Gene - Abstract
Age is major risk factor for AD; however, relationships between aging and AD are not well understood. Decline in physiological resilience is universal feature of human aging that may also play role in AD. Aging-related pathways (such as IGF-I/P53/mTOR-mediated) that are involved in tissue resilience work in concert to decide outcomes of cell responses to stress/damage, such as survival, apoptosis, autophagy, etc. We hypothesized that interplay among genes in these pathways may influence AD risk as result of epistasis (GxG). We estimated effects of pairwise epistasis between SNPs in 53 genes from respective pathways on AD risk in the LLFS compared with other data (HRS, CHS, LOADFS). We found significant (fdr
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- 2020
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49. Causes of Time Trends in Prevalence and Mortality of Major Cancers Among U.S. Older Adults
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Julia Kravchenko, Igor Akushevich, Anatoliy I. Yashin, and Arseniy P. Yashkin
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Abstracts ,Session 2881 (Poster) ,Health (social science) ,business.industry ,Time trends ,Medicine ,Life-span and Life-course Studies ,business ,AcademicSubjects/SOC02600 ,Health Professions (miscellaneous) ,Demography ,Cancer - Abstract
The time trend of prevalence and mortality of major cancers is the result of three competing processes: changes in the incidence rate, stage-specific survival, and ascertainment at early stages. Partitioning approach allows for evaluating the relative contribution of each of these competing processes to the overall trend. In this report we applied the partitioning methodology developed for the SEER registry data for prostate, colorectal, lung, female breast, bladder, ovarian, stomach, pancreas, kidney, liver cancers and melanoma. The analysis involves the design and estimation of four models for each cancer site: i) incidence rate using the Armitage-Doll model with individual predisposition modeled by the gamma distribution, ii) probability of relative survival after cancer diagnosis using the Weibull model for time after disease onset, iii) frequencies of stage at onset, and iv) mortality in the general population using the Gompertz model. B-splines are used to fit the time patterns of model parameters obtained for each year Relative contributions of the partitioning components were evaluated for individual cancers (e.g., increase of prevalence in prostate cancer in 2000 was due to increased incidence (59%), improved survival (29%), and improve stage ascertainment (12%)) and compared among all considered cancers. The results were discussed in the light of the effect of the accumulation of survivors occurring in early years (due to improving survival) and their higher mortality (because of higher prevalence of survivors) in later years (i.e., mortality is transferred to latter time periods due to overall improvements in survival).
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- 2020
50. Composite Measure of Physiological Dysregulation as a Predictor of Mortality: The Long Life Family Study
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Alexander M. Kulminski, Svetlana V. Ukraintseva, Olivia Bagley, Deqing Wu, Hongzhe Duan, Mary F. Feitosa, Bharat Thyagarajan, Konstantin G. Arbeev, Kaare Christensen, Eric Stallard, Joseph M. Zmuda, and Anatoliy I. Yashin
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media_common.quotation_subject ,Longevity ,Standard deviation ,03 medical and health sciences ,0302 clinical medicine ,Long Life Family Study ,Covariate ,Humans ,Medicine ,030212 general & internal medicine ,deficits index ,Proportional Hazards Models ,Original Research ,media_common ,Mahalanobis distance ,Receiver operating characteristic ,business.industry ,physiological dysregulation ,030503 health policy & services ,lcsh:Public aspects of medicine ,aging ,Hazard ratio ,Public Health, Environmental and Occupational Health ,lcsh:RA1-1270 ,prediction ,mortality ,Confidence interval ,3. Good health ,ROC Curve ,Biomarker (medicine) ,statistical distance ,Public Health ,0305 other medical science ,business ,Biomarkers ,Demography - Abstract
Biological aging results in changes in an organism that accumulate over age in a complex fashion across different regulatory systems, and their cumulative effect manifests in increased physiological dysregulation (PD) and declining robustness and resilience that increase risks of health disorders and death. Several composite measures involving multiple biomarkers that capture complex effects of aging have been proposed. We applied one such approach, the Mahalanobis distance (DM), to baseline measurements of various biomarkers (inflammation, hematological, diabetes-associated, lipids, endocrine, renal) in 3,279 participants from the Long Life Family Study (LLFS) with complete biomarker data. We used DM to estimate the level of PD by summarizing information about multiple deviations of biomarkers from specified “norms” in the reference population (here, LLFS participants younger than 60 years at baseline). An increase in DM was associated with significantly higher mortality risk (hazard ratio per standard deviation of DM: 1.42; 95% confidence interval: [1.3, 1.54]), even after adjustment for a composite measure summarizing 85 health-related deficits (disabilities, diseases, less severe symptoms), age, and other covariates. Such composite measures significantly improved mortality predictions especially in the subsample of participants from families enriched for exceptional longevity (the areas under the receiver operating characteristic curves are 0.88 vs. 0.85, in models with and without the composite measures, p = 2.9 × 10−5). Sensitivity analyses confirmed that our conclusions are not sensitive to different aspects of computational procedures. Our findings provide the first evidence of association of PD with mortality and its predictive performance in a unique sample selected for exceptional familial longevity.
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- 2020
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