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1. Distinct Escherichia coli transcriptional profiles in the guts of recurrent UTI sufferers revealed by pangenome hybrid selection

2. Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis.

3. A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing.

4. Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL

5. Genome-wide tracking of dCas9-methyltransferase footprints

6. Virus genomes reveal factors that spread and sustained the Ebola epidemic.

7. Figure S5 from Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

8. Table S3 from Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

9. Supplementary Figures and Legends from Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

10. Data from Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

11. Data from Discovery of Candidate DNA Methylation Cancer Driver Genes

12. Supplementary Table S4 from Discovery of Candidate DNA Methylation Cancer Driver Genes

13. Supplementary Data from Discovery of Candidate DNA Methylation Cancer Driver Genes

14. Data from Activation of Notch and Myc Signaling via B-cell–Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia

15. Targets and genomic constraints of ectopic Dnmt3b expression

16. Discovery of Candidate DNA Methylation Cancer Driver Genes

17. Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

18. Activation of Notch and Myc signaling via B cell-restricted depletion of Dnmt3a generates a consistent murine model of chronic lymphocytic leukemia

19. Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia

20. Capturing sequence diversity in metagenomes with comprehensive and scalable probe design

21. Preneoplastic Alterations Define CLL DNA Methylome and Persist through Disease Progression and Therapy

22. Phylogenetic analysis of SARS-CoV-2 in Boston highlights the impact of superspreading events

23. Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect

24. Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events

25. A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing

26. Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to graft-versus-leukemia

27. DNA methylation is a key mechanism for maintaining monoallelic expression on autosomes

28. Genome-wide tracking of dCas9-methyltransferase footprints

29. Genetic determinants and epigenetic effects of pioneer-factor occupancy

30. Genomic distribution and inter-sample variation of non-CpG methylation across human cell types.

31. ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth.

32. Prolonged Mek1/2 suppression impairs the developmental potential of embryonic stem cells

33. Robust Discovery of Candidate DNA Methylation Cancer Drivers

34. Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL

35. TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers

36. Development and Validation of a Mass Spectrometry–Based Assay for the Molecular Diagnosis of Mucin-1 Kidney Disease

37. The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state

38. Targets and genomic constraints of ectopic Dnmt3b expression

39. Comparative genomic analysis of embryonic, lineage-converted and stem cell-derived motor neurons

41. Global delay in nascent strand DNA methylation

42. Capturing diverse microbial sequence with comprehensive and scalable probe design

43. Cancer-Germline Antigen Expression Discriminates Clinical Outcome to CTLA-4 Blockade

44. The African coelacanth genome provides insights into tetrapod evolution

45. Targeted disruption of DNMT1, DNMT3A and DNMT3B in human embryonic stem cells

46. Notch-mediated expansion of cord blood progenitors: maintenance of transcriptional and epigenetic fidelity

47. Transcription factor binding dynamics during human ESC differentiation

48. Virus genomes reveal factors that spread and sustained the Ebola epidemic

49. Multiple introductions of Zika virus into the United States revealed through genomic epidemiology

50. Epigenetic restriction of extraembryonic lineages mirrors the somatic transition to cancer

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