132 results on '"Andreeva NA"'
Search Results
2. Review of methods for determining sorbitol in animal biological fluids
- Author
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Ponamarev Vladimir, Andreeva Nadezhda, Kostrova Anastasia, and Pogodaeva Polina
- Subjects
Microbiology ,QR1-502 ,Physiology ,QP1-981 ,Zoology ,QL1-991 - Abstract
Article analyzes the main sorbitol detecting methods in animal biological fluids. Also it presents a brief methodology for conducting these studies. Respectively the main methods’ advantages and disadvantages are outlined. Upon the conclusion several proposes were made for veterinary practitioners. For example, some prospects for using methods duting laboratory examination.
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- 2024
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3. Formation of marketing clusters in the agro-industrial complex of Russia
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Ugrimova Svetlana, Tukhkanen Tatiana, Andreeva Natalya, and Kabanenko Mikhail
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Environmental sciences ,GE1-350 - Abstract
The topical theoretical issues along with the experience of establishment and functioning of clusters in the agro-industrial complex are analyzed in the article. The theoretical background of their formation and the system of basic concepts of marketing cluster operation in the agro-industrial complex are considered, economic benefits from its formation and expected challenges for cluster functioning are evaluated. The working-out of strategic areas for marketing clusters’ formation in Russia is conducted in the article, which will enable the dynamic development of the country’s economy in complex current conditions. Conceptually, the clustering of economy is based on a combination of national and regional interests and opportunities intended to strengthen the real sector and raise the population’s living standards on this basis. The developed model of marketing cluster in the agro-industrial complex is presented and the principles of its creation and further functioning are described.
- Published
- 2021
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4. The contemporary state of Russian land policy
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Kabanenko Mikhail, Dubrova Lyudmila, Andreeva Natalya, Orekhova Lyudmila, and Ivanova Elena
- Subjects
Environmental sciences ,GE1-350 - Abstract
The topical issues of agricultural lands efficient use and prudent management are considered in the article. The national land policy implementation mechanism, the ways of government influence on the development of land matters in Russia and on the actions of land matters participants are analyzed in the paper. Current legal and regulatory framework applied for land regulation in Russian Federation is considered. The study of Russian land policy state highlighted a number of current problems associated with inefficiency of the existing government system of land regulation and the need to improve the legislative support of agricultural land transactions. Furthermore, the issues of use and care of agricultural lands of all categories remain largely unaddressed. Within the scope of conducted study the ways of improving the national policy applicable to the land proper use are suggested.
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- 2020
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5. Generation and development of the region cluster environment in the agro-industrial complex economy of the Rostov region
- Author
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Ugrimova Svetlana, Andreeva Natalya, and Tuchkanen Tatyana
- Subjects
Environmental sciences ,GE1-350 - Abstract
The issues concerning the study of topical problems of generation and development of the region cluster environment in the agro-industrial complex economy of the Rostov region in current economic conditions are considered in the paper. On the basis of the study, it is proved that the development of a region cluster environment in the agricultural sector can be achieved by the use of the more specific innovation policy in the agro-industrial complex upon the availability of the response strategy for given problems solution integrating structural and product policies.
- Published
- 2020
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6. Assessing the application efficiency of organic fiber filler for foamed fiber concrete
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Golova Tatiana, Magerramova Inna, and Andreeva Natalia
- Subjects
Environmental sciences ,GE1-350 - Abstract
The feasibility of using organic fiber filler as reinforcing fibers for non-autoclaved foamed concrete composites is discussed in the paper. The aim of the research is to analyze the factors affecting the strength and thermal insulation properties of foamed concrete and fiber concrete. Moreover, the study purpose is to obtain correlations for predicting the technological properties of thermal insulation foamed concrete and fiber concrete mixtures. The results of studying the indicators of compressive strength, bending, and thermal conductivity of a foamed fiber concrete composition with organic fiber filler are presented. The optimal sizes and amounts of organic filler made of straw are determined. The introduction of 15-30% of the total mixture mass is the most effective. In this case, the compressive strength increases by 28%, and the value of the thermal conductivity coefficient decreases by 8% compared with the control samples.
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- 2020
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7. STABLE DECREASE IN ATP CONTENTS IN CULTURED CEREBELLAR AND HIPPOCAMPAL-NEURONS DURING AND AFTER GLUTAMATE TOXIC TREATMENT
- Author
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Bogachev, Av, Bykova, Lp, Khodorov, Bi, Andreeva, Na, Khaspekov Leonid, Pinelis, Vg, and Victorov, Iv
8. Assessment of vulnerability to storm induced flood hazard along diverse coastline settings
- Author
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Valchev Nikolay, Andreeva Nataliya, Eftimova Petya, Prodanov Bogdan, and Kotsev Iliyan
- Subjects
Environmental sciences ,GE1-350 - Abstract
European coasts suffer notably from hazards caused by low-probability and high-impact hydrometeorological events. The aim of the study is to assess in probabilistic terms the magnitude of storm‐induced flooding hazard along Varna regional coast (Bulgaria, western Black Sea) and to identify susceptible coastal sectors (hotspots). The study is performed employing the Coastal Risk Assessment Framework (CRAF) developed within EU FP7 RISC-KIT project. It constitutes a screening process that allows estimation of relevant hazard intensities, extents and potential receptors’ exposure vulnerability within predefined sectors. Total water level was the chief property considered for calculation of coastal flooding hazard. It was estimated using Holman model (for sandy beaches) and EurOtop formulation (for artificial or rocky slopes). Resulting values were subjected to Extreme Value Analysis to establish that the best fitting distribution corresponds to Generalized Extreme Value distribution. Furthermore, hazard extents were modelled by means of bathtubbing or overwash estimation in order to form the flooding hazard indicator. Land use, social vulnerability, transport systems, utilities and business settings were considered as exposure indicators. Finally, potential risk was assessed by coastal indices following an index-based methodology, which combines hazard and exposure indicators into a single index, thereby providing base for comparison of coastal sectors’ vulnerability. The study found that the concentration of hotspots is highest in Varna Bay.
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- 2016
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9. Self-healing in dielectric capacitors: a universal method to computationally rate newly introduced energy storage designs.
- Author
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Andreeva NA and Chaban VV
- Abstract
Metalized-film dielectric capacitors provide lump portions of energy on demand. While the capacities of various capacitor designs are comparable in magnitude, their stabilities make a difference. Dielectric breakdowns - micro-discharges - routinely occur in capacitors due to the inevitable presence of localized structure defects. The application of polymeric dielectric materials featuring flexible structures helps obtain more uniform insulating layers. At the modern technological level, it is impossible to completely avoid micro-discharges upon device exploitation. Every micro-discharge results in the formation of a soot channel, which is empirically known to exhibit a semiconductor behavior. Because of its capability to conduct electricity, the emerged soot channels harm the subsequent capacitor performance and decrease the amount of stored energy. The accumulation of the soot throughout a dielectric capacitor ultimately results in irreversible overall failure. We have developed a universal method for predicting the composition and evaluating the properties of the decomposition products obtained after the dielectric breakdown of a metalized film capacitor. This method applies to both existing and newly developed designs of capacitors. In our work, we compared samples based on polypropylene (PP), polyethylene terephthalate (PET), polycarbonate (PC), and Kapton. We found that the decomposition of the PP-based composition yields the greatest number of gaseous products. The corresponding soot has the lowest electrical conductivity compared to other samples. The smallest fraction of gaseous products and the highest conductivity corresponded to the Kapton-based system. According to the electrical conductivity, the obtained soot samples have been ranked in the following order: PP < PET < PC < Kapton. The resulting gas phase content is as follows: PP (12.3 wt%) > PC (6.4 wt%) > PET (6.2 wt%) > Kapton (5.1 wt%). The obtained results are in agreement with the experimental data on the self-healing efficiency of metalized-film capacitors. The novel method qualitatively correctly rates the performances of the known capacitors. The method relies on various electronic-structure simulations and potential landscape explorations. The reported advances open an impressive avenue to computationally probe thousands of hypothetical capacitor designs and boost engineering practices.
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- 2024
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10. Meso-Macroporous Hydroxyapatite Powders Synthesized in Polyvinyl Alcohol or Polyvinylpyrrolidone Media.
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Antonova OS, Goldberg MA, Fomin AS, Kucheryaev KA, Konovalov AA, Sadovnikova MA, Murzakhanov FF, Sitnikov AI, Leonov AV, Andreeva NA, Khayrutdinova DR, Gafurov MR, Barinov SM, and Komlev VS
- Abstract
Mesoporous hydroxyapatite (HA) is widely used in various applications, such as the biomedical field, as a catalytic, as a sensor, and many others. The aim of this work was to obtain HA powders by means of chemical precipitation in a medium containing a polymer-polyvinyl alcohol or polyvinylpyrrolidone (PVP)-with concentrations ranging from 0 to 10%. The HA powders were characterized by X-ray diffraction, Fourier transform infrared spectroscopy, atomic emission spectroscopy with inductively coupled plasma, electron paramagnetic resonance, scanning electron microscopy (SEM), and transmission electron microscopy (TEM). The specific surface area (SSA), pore volume, and pore size distributions were determined by low-temperature nitrogen adsorption measurements, and the zeta potential was established. The formation of macropores in powder agglomerates was determined using SEM and TEM. The synthesis in 10% PVP increased the SSA from 101.3 to 158.0 m
2 /g, while the ripening for 7 days led to an increase from 112.3 to 195.8 m2 /g, with the total pore volume rising from 0.37 to 0.71 cm3 /g. These materials could be classified as meso-macroporous HA. Such materials can serve as the basis for various applications requiring improved textural properties and may lay the foundation for the creation of bulk 3D materials using a technique that allows for the preservation of their unique pore structure.- Published
- 2024
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11. Higher hydrogen fractions in dielectric polymers boost self-healing in electrical capacitors.
- Author
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Chaban VV and Andreeva NA
- Abstract
Electrical capacitors are omnipresent in modern electronic devices, in which they swiftly release large portions of energy on demand. The capacitors may suffer from arc discharges due to local structural heterogeneities in their components and inappropriate exploitation practices. High energies of the arc discharge are transferred as phonons to the electrode and dielectric film, which burn out locally. The dielectric breakdown takes place. The complete burnout leads to the isolation of the failed region and the capacitor's self-healing. The emerging soot can form a semiconducting channel and damage the capacitor. The efficiency of self-healing depends on the dielectric properties of the soot and its amount. We employ reactive molecular dynamics simulations to reveal the regularities of the high-temperature polymer destruction and record by-products emerging during this process. We found the formation of multiple volatile low-molecular compounds and contaminated quantum carbon dots (CQD) designated as soot. The percentage of carbon in soot is higher compared to the polymer. Furthermore, the CQD contains numerous unsaturated C-C bonds and aromatic C
6 -rings suggesting an enhanced electrical conductivity. The size of the CQD depends on the available volume, i.e. , on the spatial scale of the dielectric breakdown. The elemental composition of the soot is unique for each polymer. Polypropylene undergoes the most efficient self-healing thanks to containing a large molar fraction of hydrogen atoms. The results are addressed to the experts in electrical engineering and polymer fine-tuning.- Published
- 2024
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12. [Peripapillary pachychoroid syndrome].
- Author
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Andreeva NA and Sheremet NL
- Subjects
- Humans, Diagnosis, Differential, Syndrome, Tomography, Optical Coherence methods, Fluorescein Angiography methods, Optic Disk diagnostic imaging, Choroid diagnostic imaging, Choroid blood supply, Choroid Diseases diagnosis
- Abstract
Peripapillary pachychoroid syndrome (PPS) is a recently described condition, classified within the pachychoroid disease spectrum characterized by focal or diffuse thickening of the choroid due to dilation of choroidal vessels in the Haller's layer (pachyvessels), thinning of the choriocapillaris and the Sattler's layer, and accompanied by increased choroidal permeability and damage to the retinal pigment epithelium. Unlike other pachychoroid diseases that involve changes in the central retina, PPS presents with choroidal thickening and intra- or subretinal fluid located nasally in the macular region, near the optic disc. This review aims to summarize and analyze current data on the clinical features, pathogenesis, and treatment options for PPS found in the literature. Differentiating PPS is crucial, as its similarity to other conditions with overlapping features may lead to misdiagnosis and ineffective or inappropriate treatment.
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- 2024
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13. Complex Chromosomal Rearrangement Involving Chromosomes 10 and 11, Accompanied by Two Adjacent 11p14.1p13 and 11p13p12 Deletions, Identified in a Patient with WAGR Syndrome.
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Marakhonov AV, Vasilyeva TA, Minzhenkova ME, Sukhanova NV, Sparber PA, Andreeva NA, Teleshova MV, Baybagisova FK, Shilova NV, Kutsev SI, and Zinchenko RA
- Subjects
- Male, Humans, Infant, Chromosome Deletion, Chromosomes, Human, Pair 11 genetics, Chromosome Inversion, WAGR Syndrome diagnosis, WAGR Syndrome genetics, WAGR Syndrome pathology, Aniridia diagnosis, Aniridia genetics, Wilms Tumor genetics, Kidney Neoplasms genetics
- Abstract
Three years ago, our patient, at that time a 16-month-old boy, was discovered to have bilateral kidney lesions with a giant tumor in the right kidney. Chemotherapy and bilateral nephron-sparing surgery (NSS) for Wilms tumor with nephroblastomatosis was carried out. The patient also had eye affection, including glaucoma, eye enlargement, megalocornea, severe corneal swelling and opacity, complete aniridia, and nystagmus. The diagnosis of WAGR syndrome was suspected. De novo complex chromosomal rearrangement with balanced translocation t(10,11)(p15;p13) and a pericentric inversion inv(11)(p13q12), accompanied by two adjacent 11p14.1p13 and 11p13p12 deletions, were identified. Deletions are raised through the complex molecular mechanism of two subsequent rearrangements affecting chromosomes 11 and 10. WAGR syndrome diagnosis was clinically and molecularly confirmed, highlighting the necessity of comprehensive genetic testing in patients with congenital aniridia and/or WAGR syndrome.
- Published
- 2023
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14. Chemical similarity of dialkyl carbonates and carbon dioxide opens an avenue for novel greenhouse gas scavengers: cheap recycling and low volatility via experiments and simulations.
- Author
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Chaban VV, Andreeva NA, Bernard FL, M Dos Santos L, and Einloft S
- Abstract
Global warming linked to the industrial emissions of greenhouse gases may be the end of mankind unless it is adequately and timely handled. To prevent irreversible changes to the climate of the Earth, numerous research groups are striving to develop robust CO
2 sorbents. Dialkyl carbonates (DACs) and CO2 exhibit obvious chemical similarities in their structure and properties. The degrees of oxidation of all atoms composing DACs and CO2 are identical resulting in very similar nucleophilicities and electrophilicities of all interaction centers. While both compounds possess relatively high partial atomic charges on their polar moieties, the molecular geometries prevent tight binding of the head groups. The computed DAC-DAC binding energies are ∼40 kJ mol-1 , whereas the effect of the alkyl chain length is marginal. The phase transition points and shear viscosities of DACs are very low. We herein hypothesize and numerically rationalize that DACs represent noteworthy physical sorbents for CO2 thanks to the similar sorbent-CO2 and sorbent-sorbent interaction energies. By reporting in silico -derived sorption thermodynamics at various conditions, spectral and structural properties, and experimentally derived CO2 capacities and recyclabilities, we highlight the mutual affinity of DACs and CO2 . Indeed, the experimentally determined CO2 sorption capacity of 0.88 mol% (diethyl carbonate) at 278.15 K and 30 bar is competitive. The unprecedentedly low DAC-CO2 binding energies, ∼14 kJ mol-1 , suggest a low-cost desorption process and outstanding recyclability of the sorbent. We also note that DACs possessing long alkyl chains (butyl, hexyl, octyl) exhibit negligible volatilities, while preserving the liquid aggregate state over a practically important temperature range. The reported results may foster the development of a new class of CO2 scavengers with possibly quite peculiar characteristics.- Published
- 2023
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15. [Long-term changes in morphological and functional parameters of the optic nerve in patients with various genetic variants of hereditary optic neuropathies].
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Murakhovskaya YK, Andreeva NA, Tsygankova PG, Krylova TD, and Sheremet NL
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- Humans, Mutation, DNA, Mitochondrial genetics, Prognosis, Optic Nerve, Optic Atrophy, Hereditary, Leber diagnosis, Optic Atrophy, Hereditary, Leber genetics
- Abstract
Leber's hereditary optic neuropathy (LHON) and autosomal recessive optic neuropathy (ARON) are degenerative diseases of the optic nerve caused by mutations in nuclear or mitochondrial DNA (nDNA, mtDNA). The clinical picture of these diseases is similar, but there are some differences in how the visual functions change in patients with different molecular genetic variants of hereditary optic neuropathies (HON)., Purpose: This study evaluates the long-term changes in morphological and functional parameters in patients with different genetic variants of HON., Material and Methods: The study included 84 patients (165 eyes) with a genetically confirmed LHON or ARON diagnosis. The patients underwent best-corrected visual acuity (VA) test, color vision (CV) examination, computerized perimetry using the program for low vision assessment, optical coherence tomography (OCT)., Results: Over the course of the follow-up (60 months or longer) HON patients were revealed to have higher VA in c.152A>G and m.14484T>C mutations compared to mutations m.11778G>A and m.3460G>A. The final VA 0.5 or higher in patients with c.152A>G and m.14484T>C mutations in 54 and 71% of cases, and only in 6 and 13% of cases - with m.11778G>A and m.3460G>A mutations. Direct correlation was determined between minimal VA in the first year after disease onset and the final VA (K=0.67; p <0.001). In all patients with the investigated mutations CV recovered slightly quicker than VA., Conclusion: HON associated with c.152A>G and m.14484T>C mutations have better prognosis compared to LHON caused by m.11778G>A and m.3460G>A mutations. Vision recovery prognosis is worse in patients who had significant decrease of visual acuity at the disease onset. OCT findings reveal preservation of visual functions in all mutations.
- Published
- 2023
- Full Text
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16. [Rare pathogenic nucleotide variants of mitochondrial DNA associated with Leber's hereditary optic neuropathy].
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Andreeva NA, Murakhovskaya YK, Krylova TD, Tsygankova PG, and Sheremet NL
- Subjects
- Humans, Nucleotides, Mutation, DNA, Mitochondrial genetics, Optic Atrophy, Hereditary, Leber diagnosis, Optic Atrophy, Hereditary, Leber genetics
- Abstract
Patients with Leber Hereditary Optic Neuropathy (LHON) in most cases have one of the three most common mutations: m.11778G>A in the ND4 gene, m.3460G>A in the ND1 gene, or m.14484T>C in the ND6 gene. According to the international Mitomap database, in addition to these three most common mutations, there are 16 other primary mutations that are even more rare. There are nucleotide substitutions that are classified as candidate or conditionally pathogenic mutations. Their involvement in the disease development is not proven due to insufficient research. Moreover, in many publications, the authors describe new primary and potential mitochondrial DNA mutations associated with LHON, which are not yet included in the genetic data bases. This makes it possible to expand the diagnostic spectrum during genetic testing in the future. The advancements in genetic diagnostic technologies allow confirmation of the clinical diagnosis of LHON. The importance of genetic verification of the disease is determined by the existing problem of differential diagnosis of hereditary optic neuropathies with optic neuropathies of a different origin.
- Published
- 2023
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17. [Hereditary optic neuropathy associated with demyelinating diseases of the central nervous system].
- Author
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Eliseeva DD, Kalashnikova AK, Bryukhov VV, Andreeva NA, Zhorzholadze NV, Murakhovskaya YK, Krilova TD, Tsygankova PG, Zakharova MN, and Sheremet NL
- Subjects
- Humans, Central Nervous System, DNA, Mitochondrial genetics, Autoantibodies, Optic Nerve Diseases complications, Optic Atrophy, Hereditary, Leber complications, Optic Atrophy, Hereditary, Leber diagnosis, Optic Atrophy, Hereditary, Leber genetics, Optic Neuritis etiology, Optic Neuritis genetics, Multiple Sclerosis complications, Multiple Sclerosis genetics
- Abstract
Demyelinating optic neuritis and hereditary optic neuropathy (HON) take a leading place among the diseases, the leading clinical syndrome of which is bilateral optic neuropathy with a simultaneous or sequential significant decrease in visual acuity. Optic neuritis can occur at the onset or be one of the syndromes within multiple sclerosis (MS), neuromyelitis optica spectrum disorders (NMOSD), and myelin oligodendrocyte glycoprotein (MOG) antibody disease (MOGAD). HON are a group of neurodegenerative diseases, among which the most common variants are Leber's hereditary optic neuropathy (LHON), associated with mitochondrial DNA (mtDNA) mutations, and autosomal recessive optic neuropathy (ARON), caused by nuclear DNA (nDNA) mutations in DNAJC30 . There are phenotypes of LHON «plus», one of which is the association of HON and CNS demyelination in the same patient. In such cases, the diagnosis of each of these diseases causes significant difficulties, due to the fact that in some cases there are clinical and radiological coincidences between demyelinating and hereditary mitochondrial diseases.
- Published
- 2023
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18. Extensively amino-functionalized graphene captures carbon dioxide.
- Author
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Chaban VV and Andreeva NA
- Subjects
- Carbon Dioxide chemistry, Benzene, Prospective Studies, Molecular Conformation, Graphite chemistry
- Abstract
The development of robust carbon dioxide (CO
2 ) scavengers is a challenging but paramount problem of modern humanity. In the present work, we report a prospective CO2 sorbent based on amino-functionalized graphene (FG). Amino-FG retains the favorable physicochemical properties of graphene and acquires the capability of chemically fixing CO2 via the carbamic acid formation mechanism. In the present work, we comprehensively investigate CO2 capturing prospects by extensively amino-FG using hybrid density functional theory. We show that up to six amino groups can be grafted, remain stable, and subsequently chemisorb CO2 per benzene ring. Two functional groups above the benzene ring and four such groups below the benzene ring represent a thermodynamically stable molecular configuration in which the number of carbon atoms is equal to the number of functional groups. The thermochemistry of chemisorption is, in general, negatively impacted by the increase in the density of functional groups. However, a less favorable Gibbs free energy is compensated by a several fold higher number of prospective reaction sites. The thermochemistry results are rationalized by considering steric hindrances on the surface of graphene in the context of the states of hybridization and genuine geometries of the amino- and carboxamido functional groups. The functionalization and chemisorption decrease the hydrophobicity of graphene derivatives and, therefore, foster the development of novel and more robust chemical engineering setups.- Published
- 2022
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19. Ammonium-, phosphonium- and sulfonium-based 2-cyanopyrrolidine ionic liquids for carbon dioxide fixation.
- Author
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Chaban VV, Andreeva NA, and Voroshylova IV
- Abstract
The development of carbon dioxide (CO
2 ) scavengers is an acute problem nowadays because of the global warming problem. Many groups around the globe intensively develop new greenhouse gas scavengers. Room-temperature ionic liquids (RTILs) are seen as a proper starting point to synthesize more environmentally friendly and high-performance sorbents. Aprotic heterocyclic anions (AHA) represent excellent agents for carbon capture and storage technologies. In the present work, we investigate RTILs in which both the weakly coordinating cation and AHA bind CO2 . The ammonium-, phosphonium-, and sulfonium-based 2-cyanopyrrolidines were investigated using the state-of-the-art method to describe the thermochemistry of the CO2 fixation reactions. The infrared spectra and electronic and structural properties were simulated at the hybrid density functional level of theory to characterize the reactants and products of the chemisorption reactions. We conclude that the proposed CO2 capturing mechanism is thermodynamically allowed and discuss the difference between different families of RTILs. Quite unusually, the intramolecular electrostatic attraction plays an essential role in stabilizing the zwitterionic products of the CO2 chemisorption. The difference in chemisorption performance between the families of RTILs is linked to sterical hindrances and nucleophilicities of the α- and β-carbon atoms of the aprotic cations. Our results rationalize previous experimental CO2 sorption measurements (Brennecke et al. , 2021).- Published
- 2022
- Full Text
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20. [Metabolic disorders in hereditary optic neuropathies].
- Author
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Sheremet NL, Andreeva NA, Zhorzholadze NV, Murakhovskaya YK, Shmelkova MS, Krylova TD, and Tsygankova PG
- Subjects
- Folic Acid, Homocysteine, Humans, Vitamins, Folic Acid Deficiency complications, Folic Acid Deficiency diagnosis, Hyperhomocysteinemia complications, Hyperhomocysteinemia diagnosis, Optic Atrophy, Hereditary, Leber diagnosis, Optic Nerve Diseases diagnosis, Optic Nerve Diseases etiology
- Abstract
Folate metabolism disorders are known to have a potential involvement in the pathophysiology of mitochondrial diseases. Many researchers suggest that profound systemic folate deficiency may contribute to mitochondrial folate deficiency. Folic acid metabolism is closely related to vitamin B
1 2 and homocysteine. Considering that hereditary optic neuropathies (HON) are mitochondrial diseases, it is important to study the folate status, the content of vitamin B1 2 and homocysteine in patients with this pathology., Objective: To compare the content of folic acid, vitamin B1 2 and homocysteine in the blood serum of patients with Leber's hereditary optic neuropathy (LHON) and autosomal recessive optic neuropathy (ARON), optic neuropathy of other genesis, and the comparison group., Material and Methods: The study involved 58 patients with LHON and ARON, the control group of 49 patients with ischemic, inflammatory, traumatic and compressive optic neuropathies, and the comparison group of 20 healthy volunteers., Results: A decrease in blood folic acid levels was revealed (4.0±1.6 ng/mL) in patients with HON compared to the control group ( p =1.3·10-8 ) and the comparison group ( p =1·10-17 ). The content of vitamin B1 2 in patients with HON was 380.8±168.1 pg/mL, which was significantly lower than in the comparison group ( p =0.0001). The homocysteine content was 14.1±5.6 μmol/L in patients with HON, which was significantly higher than in the control group ( p =0.0007) and the comparison group ( p =0.000003). At the same time, an increase in homocysteine level of more than 10 µmol/L was revealed in 75% of patients with HON. Similar metabolic disorders were found in groups with various mutations in mitochondrial and nuclear DNA., Conclusion: Patients with HON showed marked decrease in the levels of folic acid and vitamin B12 , as well as hyperhomocysteinemia. It is very important to identify the causes of metabolic disorders in order to determine the role of folate deficiency in the development of HON, as well as the possibility of its pharmacological treatment.- Published
- 2022
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21. [Leber's hereditary optic neuropathy clinical features in patients with mitochondrial DNA m.13513G>A candidate mutation].
- Author
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Andreeva NA, Murakhovskaya YK, Tsygankova PG, Krilova TD, and Sheremet NL
- Subjects
- Humans, DNA, Mitochondrial genetics, Pedigree, Mutation, Visual Fields, Optic Atrophy, Hereditary, Leber diagnosis, Optic Atrophy, Hereditary, Leber genetics
- Abstract
Leber's hereditary optic neuropathy (LHON) is caused by primary mtDNA by both primary mtDNA mutations and new mtDNA mutations. The last ones, when detected in several independent LHON families, receive candidate status. The description of new LHON-associated mtDNA mutation is relevant., Purpose: To determine the LHON clinical features in patients with the m.13513G>A mutation and to estimate the patients' proportion with this pathogenic variant in the LHON patients' sample., Material and Methods: The study included 5 LHON patients, associated with m.13513G>A mutation in the ND5 gene in the heteroplasmic state. A standard examination was performed, including color blindness test, visual fields test, spectral optical coherence tomography., Results: LHON, associated with m.13513G>A in the heteroplasmic state in the range of 25-60%, is characterized by visual impairment without additional neurological or other extraocular symptoms. Visual recovery to 0.3-1.0 presents in all patients; the visual recovery onset occurs between 12 and 20 months from the disease manifestation. The decrease of the central scotoma size and its density and the color vision improvement are also observed as well as the average retinal nerve fibers layer and ganglion cell complex thickness decrease. The m.13513G>A mutation frequency is 5% in 100 LHON patients' sample and 22.5% in 22 LHON patients with rare and candidate mtDNA mutations., Conclusion: The m.13513G>A mutation can be considered as primary LHON mutation. The list of pathogenic variants recommended for testing LHON can include this mutation. The m.13513 G>A mutation determines the mild LHON course and good visual functions prognosis in these patients.
- Published
- 2022
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22. [Bilateral vision loss on programmed hemodialysis (clinical observation)].
- Author
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Kaloshina AA, Andreeva NA, Zhorzholadze NV, Kalashnikova AK, and Sheremet NL
- Subjects
- Humans, Renal Dialysis adverse effects, Vision Disorders diagnosis, Vision Disorders etiology, Blindness diagnosis, Blindness etiology, Optic Neuropathy, Ischemic diagnosis, Optic Neuropathy, Ischemic etiology, Hypotension complications
- Abstract
The most common complication of hemodialysis is blood pressure decrease, which is an ischemic optic neuropathy risk factor. The article presents a case study of sequential bilateral ischemic optic neuropathy with the development of amaurosis as a result of arterial hypotension against the background of programmed hemodialysis. Differential diagnosis in bilateral visual impairment is discussed.
- Published
- 2022
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23. [Electrophysiological and psychophysical studies in assessment of visual functions in patients with hereditary optic neuropathy].
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Sheremet NL, Ronzina IA, Andreeva NA, Zhorzholadze NV, Murakhovskaya YK, Nevinitsyna TA, Shmelkova MS, Krylova TD, Tsygankova PG, Gerasimidi ES, Lyamzaev KG, Skulachev MV, and Karger EM
- Subjects
- Electroretinography methods, Humans, Tomography, Optical Coherence, Visual Field Tests, Evoked Potentials, Visual, Optic Nerve Diseases diagnosis, Optic Nerve Diseases etiology
- Abstract
Purpose: To study the capabilities of electrophysiological and psychophysical examination methods for assessment of the functional state of ganglion cells, retina and optic nerve in patients with hereditary optic neuropathy (HON)., Material and Methods: The study included 60 patients (118 eyes) with a genetically confirmed diagnosis of HON. All study patients underwent visual field test (VFT), spectral optical coherence tomography (OCT), flash and pattern visual evoked potentials (VEP) (Flash-VEP, FVEP; Pattern-VEP, PVEP), photopic electroretinography with photonegative response (PhNR) registration and the color vision test. In 24 patients (46 eyes), these parameters were assessed before the start of treatment and one year later. The treatment involved the mitochondria-targeted antioxidant SkQ1 - plastoquinonyl-decyl-triphenylphosphonium bromide (PDTP) in the form of eye drops., Results: The main PVEP components for 1.0° and 0.3° were registered in 20% and in 14% of patient eyes with HON and high visual functions, respectively. After one year of PDTP use, a significant decrease in P100 peak latency was found only in the group with disease duration of ≤1.5 years as of the time of treatment start ( p <0.05). Significant differences were observed in the PhNR amplitude ( p <0.004) between patients of the main and the control groups, as well as in the PhNR amplitude between patients with visual acuity of ≤0.1 and ≥0.13 ( p <0.01). Patients with high visual functions were found to have a correlation between the PhNR amplitude, GCC thickness and the global loss index (GLV)., Conclusion: Along with VFT, OCT and color vision tests, electrophysiological studies are one of the main methods of examining patients with HON. After one year of PDTP use, there was a significant decrease in the FVEP P2 peak latency in the group with a disease duration of ≤1.5 years as of the time of treatment start. The PhNR amplitude in patients with high visual functions was found to correlate with structural changes in the ganglion cell layer and the retinal nerve fiber layer.
- Published
- 2022
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24. [Modern prerequisites for creating a collagen-based artificial analogue of the corneal stroma].
- Author
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Andreev AY, Osidak EO, Avetisov SE, Voronin GV, Andreeva NA, Agaeva LM, Yu Y, and Domogatskiy SP
- Subjects
- Tissue Engineering, Cornea, Biocompatible Materials, Corneal Stroma, Collagen
- Abstract
Despite the fact that various collagen biomaterials have been actively used in ophthalmology for more than 30 years, the problem of creating a material that could replace the donor cornea have not been solved. Recent advances in the field of tissue engineering and regenerative medicine have shifted the focus of approaches to solving the problem of creating an artificial cornea towards laying conditions for the restoration of its specific layers through mechanisms of its own cellular regeneration. In this regard, extracellular matrices based on collagen are gaining popularity. This review discusses general limitations and advantages of collagen for creating an artificial cornea.
- Published
- 2022
- Full Text
- View/download PDF
25. Impaired complex I repair causes recessive Leber's hereditary optic neuropathy.
- Author
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Stenton SL, Sheremet NL, Catarino CB, Andreeva NA, Assouline Z, Barboni P, Barel O, Berutti R, Bychkov I, Caporali L, Capristo M, Carbonelli M, Cascavilla ML, Charbel Issa P, Freisinger P, Gerber S, Ghezzi D, Graf E, Heidler J, Hempel M, Heon E, Itkis YS, Javasky E, Kaplan J, Kopajtich R, Kornblum C, Kovacs-Nagy R, Krylova TD, Kunz WS, La Morgia C, Lamperti C, Ludwig C, Malacarne PF, Maresca A, Mayr JA, Meisterknecht J, Nevinitsyna TA, Palombo F, Pode-Shakked B, Shmelkova MS, Strom TM, Tagliavini F, Tzadok M, van der Ven AT, Vignal-Clermont C, Wagner M, Zakharova EY, Zhorzholadze NV, Rozet JM, Carelli V, Tsygankova PG, Klopstock T, Wittig I, and Prokisch H
- Subjects
- Adolescent, Adult, Cell Line, Child, Preschool, Electron Transport Complex I chemistry, Female, Gene Knockout Techniques, Genes, Recessive, HSP40 Heat-Shock Proteins deficiency, HSP40 Heat-Shock Proteins metabolism, Homozygote, Humans, Male, Middle Aged, Pedigree, Penetrance, Phenotype, Protein Subunits, Reactive Oxygen Species metabolism, Young Adult, Electron Transport Complex I metabolism, HSP40 Heat-Shock Proteins genetics, Mutation, Optic Atrophy, Hereditary, Leber genetics, Optic Atrophy, Hereditary, Leber metabolism
- Abstract
Leber's hereditary optic neuropathy (LHON) is the most frequent mitochondrial disease and was the first to be genetically defined by a point mutation in mitochondrial DNA (mtDNA). A molecular diagnosis is achieved in up to 95% of cases, the vast majority of which are accounted for by 3 mutations within mitochondrial complex I subunit-encoding genes in the mtDNA (mtLHON). Here, we resolve the enigma of LHON in the absence of pathogenic mtDNA mutations. We describe biallelic mutations in a nuclear encoded gene, DNAJC30, in 33 unsolved patients from 29 families and establish an autosomal recessive mode of inheritance for LHON (arLHON), which to date has been a prime example of a maternally inherited disorder. Remarkably, all hallmarks of mtLHON were recapitulated, including incomplete penetrance, male predominance, and significant idebenone responsivity. Moreover, by tracking protein turnover in patient-derived cell lines and a DNAJC30-knockout cellular model, we measured reduced turnover of specific complex I N-module subunits and a resultant impairment of complex I function. These results demonstrate that DNAJC30 is a chaperone protein needed for the efficient exchange of complex I subunits exposed to reactive oxygen species and integral to a mitochondrial complex I repair mechanism, thereby providing the first example to our knowledge of a disease resulting from impaired exchange of assembled respiratory chain subunits.
- Published
- 2021
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26. Enzymes of Polyphosphate Metabolism in Yeast: Properties, Functions, Practical Significance.
- Author
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Kulakovskaya TV, Andreeva NA, Ledova LA, Ryazanova LP, Trilisenko LV, and Eldarov MA
- Subjects
- Acid Anhydride Hydrolases metabolism, Phosphotransferases (Phosphate Group Acceptor) metabolism, Saccharomyces cerevisiae Proteins metabolism, Polyphosphates metabolism, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae metabolism
- Abstract
Inorganic polyphosphates (polyP) are the linear polymers of orthophosphoric acid varying in the number of phosphate residues linked by the energy-rich phosphoanhydride bonds. PolyP is an essential component in living cells. Knowledge of polyP metabolizing enzymes in eukaryotes is necessary for understanding molecular mechanisms of polyP metabolism in humans and development of new approaches for treating bone and cardiovascular diseases associated with impaired mineral phosphorus metabolism. Yeast cells represent a rational experimental model for this research due to availability of the methods for studying phosphorus metabolism and construction of knockout mutants and strains overexpressing target proteins. Multicomponent system of polyP metabolism in Saccharomyces cerevisiae cells is presented in this review discussing properties, functioning, and practical significance of the enzymes involved in the synthesis and degradation of this important metabolite.
- Published
- 2021
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- View/download PDF
27. [Possibilities of an experimental damaging effect on the retinal pigment epithelium].
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Sheremet NL, Mikaelyan AA, Andreev AY, Plyukhova AA, Andreeva NA, and Kiselev SL
- Subjects
- Animals, Bruch Membrane, Humans, Rabbits, Retinal Pigment Epithelium, Tomography, Optical Coherence, Induced Pluripotent Stem Cells, Retinal Detachment surgery
- Abstract
Purpose: To simulate the damaging effect on retinal pigment epithelium (RPE) in an experiment studying the effect of human neuronal precursors (NPs)., Material and Methods: The study was carried out on 31 rabbits (31 eyes) of the Chinchilla breed, which were divided into 3 groups: the 1
st group received a subretinal injection of balanced saline solution (BSS); the 2nd group - subretinal injection of BSS with vitrectomy, displacement of the injection bladder away from the injection site using a perfluororganic compound (PFOC) and laser coagulation; the 3rd group - subretinal injection of a culture of NPs using the same method as in the group 2. All rabbits were observed for 21 days using ophthalmoscopy, optical coherence tomography (OCT) and autofluorescence (AF)., Results: In the 1st group, 4 out of 5 rabbits were observed to have total retinal detachment and vitreoretinal proliferative processes in the early postoperative period after subretinal injection of the BSS. In the 2nd group, OCT and AF revealed atrophy of the outer and inner layers of the retina as well as disorganization of the photoreceptors-RPE-Bruch's membrane complex in the area of injection on the 21 day after the operation. In the 3rd group, the OCT data obtained during the 21 days of observation showed that a hyperreflective zone at the level of the RPE-Bruch's membrane complex corresponding to the NPs injection site was preserved, while there was a partial loss of the outer retinal layers - but of a smaller volume compared to the BSS injection. The suggested method of subretinal injection led to a reduced number of complications: in the 1st group, postoperative complications amounted to 80%, while in the 2nd and 3rd groups - 45%., Conclusion: The study proposes a new method for retinal injection of BSS, which can help reduce RPE degeneration patterns and possible postoperative complications, thus increasing research efficiency. Subretinal injection of a culture of neuronal precursors derived from human induced pluripotent stem cells (iPSCs) in an experiment can serve as a universal model for studying the survival and integration of stem cells.- Published
- 2021
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28. Responses of DNA Mismatch Repair Proteins to a Stable G-Quadruplex Embedded into a DNA Duplex Structure.
- Author
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Pavlova AV, Monakhova MV, Ogloblina AM, Andreeva NA, Laptev GY, Polshakov VI, Gromova ES, Zvereva MI, Yakubovskaya MG, Oretskaya TS, Kubareva EA, and Dolinnaya NG
- Subjects
- Binding Sites, DNA Breaks, Double-Stranded, DNA, Bacterial chemistry, DNA, Bacterial metabolism, Escherichia coli metabolism, Escherichia coli Proteins genetics, Escherichia coli Proteins metabolism, MutL Proteins genetics, MutL Proteins metabolism, MutS DNA Mismatch-Binding Protein genetics, MutS DNA Mismatch-Binding Protein metabolism, Nucleotide Motifs, Protein Binding, Rhodobacter sphaeroides metabolism, DNA Mismatch Repair, DNA, Bacterial genetics, Escherichia coli genetics, G-Quadruplexes, Genome, Bacterial, Rhodobacter sphaeroides genetics
- Abstract
DNA mismatch repair (MMR) plays a crucial role in the maintenance of genomic stability. The main MMR protein, MutS, was recently shown to recognize the G-quadruplex (G4) DNA structures, which, along with regulatory functions, have a negative impact on genome integrity. Here, we studied the effect of G4 on the DNA-binding activity of MutS from Rhodobacter sphaeroides (methyl-independent MMR) in comparison with MutS from Escherichia coli (methyl-directed MMR) and evaluated the influence of a G4 on the functioning of other proteins involved in the initial steps of MMR. For this purpose, a new DNA construct was designed containing a biologically relevant intramolecular stable G4 structure flanked by double-stranded regions with the set of DNA sites required for MMR initiation. The secondary structure of this model was examined using NMR spectroscopy, chemical probing, fluorescent indicators, circular dichroism, and UV spectroscopy. The results unambiguously showed that the d(GGGT)
4 motif, when embedded in a double-stranded context, adopts a G4 structure of a parallel topology. Despite strong binding affinities of MutS and MutL for a G4, the latter is not recognized by E. coli MMR as a signal for repair, but does not prevent MMR processing when a G4 and G/T mismatch are in close proximity.- Published
- 2020
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29. Inorganic Polyphosphate and Physiological Properties of Saccharomyces cerevisiae Yeast Overexpressing Ppn2.
- Author
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Ryazanova LP, Ledova LA, Andreeva NA, Zvonarev AN, Eldarov MA, and Kulakovskaya TV
- Subjects
- Acid Anhydride Hydrolases genetics, Alkalies pharmacology, Cell Proliferation, Peroxides pharmacology, Saccharomyces cerevisiae drug effects, Saccharomyces cerevisiae Proteins genetics, Acid Anhydride Hydrolases metabolism, Polyphosphates metabolism, Saccharomyces cerevisiae physiology, Saccharomyces cerevisiae Proteins metabolism, Zinc pharmacology
- Abstract
The effect of the yeast endopolyphosphatase Ppn2 overproduction on the metabolism of inorganic polyphosphates in Saccharomyces cerevisiae yeast was studied. Expression of the PPN2 gene under control of the strong constitutive promoter of glyceraldehyde 3-phosphate dehydrogenase gene (PKG1) led to a significant increase in the endopolyphosphatase activity stimulated by cobalt/zinc ions. This activity was present in both soluble and membrane subcellular fractions; it was higher toward long-chain polyphosphates and could be stimulated by ADP. The content of short-chain polyphosphates in the cells of the overexpressing strain was ~2.5 times higher compared to the parent strain. The cells overexpressing Ppn2 were more resistant to peroxide and alkali. The role of short-chain polyphosphates in the adaptation to these stress factors is discussed.
- Published
- 2020
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30. [Characteristics of changes in retinal and optic nerve microvascularisature in Leber hereditary optic neuropathy patients seen with optical coherence tomography angiography].
- Author
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Sheremet NL, Shmelkova MS, Andreeva NA, Zhorzholadze NV, Fomin AV, Krylova TD, and Tsygankova PG
- Subjects
- Fluorescein Angiography, Humans, Retinal Vessels, Tomography, Optical Coherence, Optic Atrophy, Hereditary, Leber, Optic Disk
- Abstract
Purpose: To investigate the features of various parameters of the density of retinal blood vessels, optic nerve head (ONH) and peripapillary region in hereditary optic neuropathy (HON) patients revealed with optical coherence tomography angiography (OCTA)., Material and Methods: The study included 29 HON patients divided into three groups based on symptoms duration (less than 1 year; 1-5 years, more than 5 years) and visual acuity (0.5-1.0; 0.04-0.4; 0.03 and lower). Relative macular, optic disc and peripapillary vessel density (VD, %) was assessed by OCTA (xR Avanti, Optovue Inc., USA)., Results: Significant progressive VD reduction in superficial capillary plexus (SCP) was detected in all parafovea sectors and in the temporal sector of perifovea over the course of disease progression. No significant differences of these parameters were found in correlation with visual acuity. Patients with VA of 0.5-1.0 turned out to have greater VD in deep capillary plexus (DCP), whereas no differences were found in relation to the duration of HON. A strong significant correlation between the SCP and DCP VD only in central foveal area was revealed in all groups depending on the VA and symptoms duration. Over the course of HON progression, VD in the temporal sector and in temporal segments of superior and inferior sectors has gradually reduced. In patients with VA of 0.5-1.0, the retinal nerve fibers layer (RNFL) thickness in the temporal sector and optic nerve VD was notably greater compared to patients with lower VA. The most significant correlation was established between VA and structural changes (K=0.75, p <0.001) and VD in the temporal sector ( K =0.57-0.61, p <0.001)., Conclusion: The obtained data suggest that derivative microvascular changes play an active role in the clinical progression of the disease.
- Published
- 2020
- Full Text
- View/download PDF
31. [Dysthyroid optic neuropathy: surgical treatment potential].
- Author
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Grusha YO, Ismailova DS, Kochetkov PA, and Andreeva NA
- Subjects
- Decompression, Surgical, Humans, Optic Nerve, Orbit surgery, Random Amplified Polymorphic DNA Technique, Retrospective Studies, Treatment Outcome, Graves Ophthalmopathy surgery, Optic Nerve Diseases surgery
- Abstract
Purpose: To evaluate the effectiveness of bony orbital decompression in patients with dysthyroid optic neuropathy (DON)., Material and Methods: The study analyzed 255 patients with thyroid eye disease (TED) and bony orbital decompression. Those among them who had DON as an indication for surgery were investigated further. Patients underwent standard ophthalmological examination, computer perimetry, color vision assessment using Ishihara tables, relative afferent pupillary defect (RAPD), computed tomography (CT) of the orbit, and in some cases optical coherence tomography (OCT) of the optic nerve., Results: Final analysis included 31 patients (52 eyes). On 13 orbits, only lateral wall decompression was performed, and medial wall decompression was the only intervention in 7 orbits. In other cases, these techniques were performed either simultaneously - in 14 orbits, or alternately - in 18 orbits. In the postoperative period, all patients showed significant positive dynamics in terms of visual acuity, visual field, and proptosis. In all cases, decrease of the amount of orbital inflammation was observed. Exophthalmos significantly decreased after surgery and averaged 20.5±3.1 mm, which is 4.7 mm less than the initial one. All changes were statistically significant ( p <0.01)., Conclusion: Bony orbital decompression is an effective and safe treatment option for DON resistant to high doses of glucocorticoids. In the vast majority of cases, this intervention is the only way to improve and stabilize visual function in this severe category of patients.
- Published
- 2020
- Full Text
- View/download PDF
32. [Structural and functional changes in the retina and optic nerve in patients with toxic optic neuropathy caused by acute methanol poisoning].
- Author
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Sheremet NL, Andreeva NA, Zhorzholadze NV, Shmelkova MS, and Fomin AV
- Subjects
- Female, Humans, Male, Optic Nerve, Retina, Tomography, Optical Coherence, Toxic Optic Neuropathy, Methanol, Retinal Ganglion Cells
- Abstract
Purpose: To identify the specifics of structural and functional changes in patients with toxic optical neuropathy caused by acute methanol poisoning., Material and Methods: One female patient with toxic optic neuropathy (TON), 2 male patients with partial optic atrophy caused by methanol poisoning, and 1 male patient with methanol intoxication after ethanol containing alcohol use were examined with kinetic perimetry and optical coherence tomography., Results: Patients with TON caused by acute methanol poisoning were observed to have decreasing visual acuity to the extent of complete blindness. OCT follow-up studies revealed thinning of the retinal nerve fiber layer (RNFL) as well as formation of microcysts in the inner retinal layers, destruction of ellipsoid zone and outer segments of photoreceptors. The patient with methanol intoxication after use of ethanol containing alcohol had retained his visual functions; he was found to have microcysts and RNFL thinning during the first few months after the intoxication, but they were within normal range of OCT parameters., Conclusion: Patients with TON caused by acute methanol poisoning are common to have optic atrophy with either residual visual functions or complete blindness as well as microcysts formation, structural changes and destruction of the ellipsoid zone and outer segments of photoreceptors. In patient with methanol intoxication after use of ethanol, which is known to be an antidote, complete visual recovery was observed, although some microcystic changes and ganglion cells layer thinning were noted.
- Published
- 2020
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33. Three rare pathogenic mtDNA substitutions in LHON patients with low heteroplasmy.
- Author
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Krylova TD, Sheremet NL, Tabakov VY, Lyamzaev KG, Itkis YS, Tsygankova PG, Andreeva NA, Shmelkova MS, Nevinitsyna TA, Kadyshev VV, and Zakharova EY
- Subjects
- Adult, Cells, Cultured, Female, Fibroblasts drug effects, Fibroblasts metabolism, Herbicides pharmacology, Humans, Membrane Potential, Mitochondrial physiology, Paraquat pharmacology, Young Adult, DNA, Mitochondrial genetics, Heteroplasmy, Optic Atrophy, Hereditary, Leber genetics, Point Mutation
- Abstract
In this article we present clinical, molecular and biochemical investigations of three patients with LHON caused by rare point substitutions in mtDNA. One patient harbours the known mtDNA mutation (m.13513 G>A), the others have new variants (m.13379 A>G in MT-ND5 gene and m.14597 A>G in MT-ND6 gene, which has never been previously associated with LHON). NGS analysis of a whole mtDNA derived from patient's blood revealed a low mutation load (24%, 47%, 23% respectively). Our data, including family segregation analysis, measurement of reactive oxygen species (ROS) production and cytotoxic effect of paraquat and high-resolution respirometry, showed that nucleotide variant m.14597 A>G can be classified as pathogenic mutation., (Copyright © 2019 Elsevier B.V. and Mitochondria Research Society. All rights reserved.)
- Published
- 2020
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- View/download PDF
34. [Mitochondrial biogenesis in hereditary optic neuropathies].
- Author
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Sheremet NL, Andreeva NA, Shmel'kova MS, and Tsigankova PG
- Subjects
- DNA, Mitochondrial, Humans, Organelle Biogenesis, Retinal Ganglion Cells, Optic Nerve Diseases
- Abstract
The article offers a review of mitochondrial biogenesis in hereditary optic neuropathies. It covers the mechanisms of mitochondrial biogenesis, factors affecting it and tools for mitochondrial turnover assessment.
- Published
- 2019
- Full Text
- View/download PDF
35. Understanding weakly coordinating anions: tetrakis(pentafluorophenyl)borate paired with inorganic and organic cations.
- Author
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Andreeva NA and Chaban VV
- Abstract
Efficient design of ionic compounds requires a systematic understanding of cation-anion interactions. Weakening of electrostatic attraction is essential to increase the liquid range of the ionic compound and decrease its melting point. Here, we report simulations of the closest-approach cation-anion distances in a variety of ion pairs containing the tetrakis(pentafluorophenyl)borate (TFPB
- ) anion. Small alkali cations (Li+ , Na+ ) penetrate the TFPB- core, whereas K+ and larger organic cations do not. In the latter case, the shortest possible distance from the cations to the boron atom of TFPB- ranges from 0.50 nm to 0.63 nm. TFPB- was shown to be substantially rigid, providing a steric hindrance to thermodynamically efficient cation-anion coordination. Our results prove that TFPB- is more efficient for electrostatic charge confinement than the tetraoctylammonium cation, whereas the perfluorophenyl group is more efficient than linear alkyl chains. These simulations will motivate development of TFPB- -based ionic liquids with low phase transition points. Graphical Abstract Ionic configuration of the equilibrated "TFPB + K"system.- Published
- 2017
- Full Text
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36. Sodium-ion electrolytes based on ionic liquids: a role of cation-anion hydrogen bonding.
- Author
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Chaban VV and Andreeva NA
- Abstract
Recent success of the sodium-ion batteries fosters an academic interest for their investigation. Room-temperature ionic liquids (RTILs) constitute universal solvents providing non-volatility and non-flammability to electrolytes. In the present work, we consider four families of RTILs as prospective solvents for NaBF4 and NaNO3 with an inorganic salt concentration of 25 and 50 mol%. We propose a methodology to rate RTILs according to their solvation capability using parameters of the computed radial distribution functions. Hydrogen bonds between the cations and the anions of RTILs were found to indirectly favor sodium solvation, irrespective of the particular RTIL and its concentration. The best performance was recorded in the case of cholinium nitrate. The reported observations and correlations of ionic structures and properties offer important assistance to an emerging field of sodium-ion batteries. Graphical Abstract Sodium-ion electrolytes.
- Published
- 2016
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37. Solvation of the morpholinium cation in acetonitrile. Effect of an anion.
- Author
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Chaban VV and Andreeva NA
- Subjects
- Acetonitriles chemistry, Molecular Dynamics Simulation, Morpholines chemistry
- Abstract
Ionic liquids (ILs) constitute a fast growing class of compounds finding multiple applications in science and technology. Morpholinium-based ILs (MBILs) and their mixtures with polar molecular co-solvents are interesting as sustainable electrolyte systems for electrochemistry. We investigate local structures of protic and apropic morpholinium cations in acetonitrile (ACN) using semi-empirical molecular dynamics (MD) simulations. An impact of an anion (acetate) on the cation solvation regularities is discussed. Unlike oxygen, nitrogen of the morpholine ring is a strong electrophilic binding center. This site is responsible for the interactions of the cation with the solvent and with the anion. In protic MBILs, the role of nitrogen is delegated to the proton, which is linked to nitrogen. The acetate anion weakens solvation of the cation due to occupation of space near nitrogen or proton. The analysis reveals a favorable solvation of MBILs in ACN, which is a prerequisite for a new high-performance electrolyte system. The reported structural data were validated through point-to-point comparison with the MP2 post-Hartree-Fock theory and density functional theory.
- Published
- 2016
- Full Text
- View/download PDF
38. Polyphosphates and Polyphosphatase Activity in the Yeast Saccharomyces cerevisiae during Overexpression of the DDP1 Gene.
- Author
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Trilisenko LV, Andreeva NA, Eldarov MA, Dumina MV, and Kulakovskaya TV
- Subjects
- Gene Expression, Saccharomyces cerevisiae enzymology, Acid Anhydride Hydrolases genetics, Acid Anhydride Hydrolases metabolism, Polyphosphates metabolism, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism
- Abstract
The effects of overexpression of yeast diphosphoinositol polyphosphate phosphohydrolase (DDP1) having endopolyphosphatase activity on inorganic polyphosphate metabolism in Saccharomyces cerevisiae were studied. The endopolyphosphatase activity in the transformed strain significantly increased compared to the parent strain. This activity was observed with polyphosphates of different chain length, being suppressed by 2 mM tripolyphosphate or ATP. The content of acid-soluble and acid-insoluble polyphosphates under DDP1 overexpression decreased by 9 and 28%, respectively. The average chain length of salt-soluble and alkali-soluble fractions did not change in the overexpressing strain, and that of acid-soluble polyphosphate increased under phosphate excess. At the initial stage of polyphosphate recovery after phosphorus starvation, the chain length of the acid-soluble fraction in transformed cells was lower compared to the recipient strain. This observation suggests the complex nature of DDP1 involvement in the regulation of polyphosphate content and chain length in yeasts.
- Published
- 2015
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39. Polyphosphates and exopolyphosphatase activities in the yeast Saccharomyces cerevisiae under overexpression of homologous and heterologous PPN1 genes.
- Author
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Eldarov MA, Baranov MV, Dumina MV, Shgun AA, Andreeva NA, Trilisenko LV, Kulakovskaya TV, Ryasanova LP, and Kulaev IS
- Subjects
- Acid Anhydride Hydrolases genetics, Acremonium genetics, Fungal Proteins genetics, Gene Expression, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Saccharomyces cerevisiae Proteins metabolism, Acid Anhydride Hydrolases metabolism, Fungal Proteins metabolism, Polyphosphates metabolism, Saccharomyces cerevisiae metabolism
- Abstract
The role of exopolyphosphatase PPN1 in polyphosphate metabolism in fungi has been studied in strains of Saccharomyces cerevisiae transformed by the yeast PPN1 gene and its ortholog of the fungus Acremonium chrysogenum producing cephalosporin C. The PPN1 genes were expressed under a strong constitutive promoter of the gene of glycerol aldehyde-triphosphate dehydrogenase of S. cerevisiae in the vector pMB1. The yeast strain with inactivated PPN1 gene was transformed by the above vectors containing the PPN1 genes of S. cerevisiae and A. chrysogenum. Exopolyphosphatase activity in the transformant with the yeast PPN1 increased 28- and 11-fold compared to the mutant and parent PPN1 strains. The amount of polyphosphate in this transformant decreased threefold. Neither the increase in exopolyphosphatase activity nor the decrease in polyphosphate content was observed in the transformant with the orthologous PPN1 gene of A. chrysogenum, suggesting the absence of the active form of PPN1 in this transformant.
- Published
- 2013
- Full Text
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40. Polyphosphates and exopolyphosphatases in cytosol and mitochondria of Saccharomyces cerevisiae during growth on glucose or ethanol under phosphate surplus.
- Author
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Andreeva NA, Kulakovskaya TV, Kulakovskaya EV, and Kulaev IS
- Subjects
- Ethanol metabolism, Glucose metabolism, Phosphates metabolism, Saccharomyces cerevisiae growth & development, Saccharomyces cerevisiae metabolism, Acid Anhydride Hydrolases metabolism, Cytosol enzymology, Mitochondria enzymology, Polyphosphates metabolism, Saccharomyces cerevisiae enzymology, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Content and chain lengths of inorganic polyphosphates (polyP) as well as exopolyphosphatase activities were compared in cytosol and mitochondria of the yeast Saccharomyces cerevisiae during growth on glucose or ethanol under phosphate surplus. PolyP metabolism in cytosol and mitochondria was substantially dependent upon the carbon source. Acid-soluble polyP accumulated mainly in cytosol using either glucose or ethanol. The level of the accumulation was lower during growth on ethanol compared to that on glucose. Increase in polyP content in mitochondria was observed during growth on glucose, but not on ethanol. In cytosol the activity of exopolyphosphatase PPN1 was increased and the activity of exopolyphosphatase PPX1 was decreased independently of the carbon source under phosphate surplus conditions. Growth on ethanol caused exopolyphosphatase PPN1 to appear in the soluble mitochondrial fraction, while during growth on glucose only exopolyphosphatase PPX1 was present in this fraction.
- Published
- 2008
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- View/download PDF
41. High molecular mass exopolyphosphatase from the cytosol of the yeast Saccharomyces cerevisiae is encoded by the PPN1 gene.
- Author
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Andreeva NA, Kulakovskaya TV, and Kulaev IS
- Subjects
- Amino Acid Sequence, Cytosol enzymology, Genes, Fungal, Molecular Sequence Data, Molecular Weight, Polyphosphates metabolism, Saccharomyces cerevisiae cytology, Saccharomyces cerevisiae genetics, Acid Anhydride Hydrolases genetics, Saccharomyces cerevisiae enzymology
- Abstract
It has been shown that the high molecular mass exopolyphosphatase localized in cytosol of the yeast Saccharomyces cerevisiae is encoded by the PPN1 gene. This enzyme is expressed under special culture conditions when stationary phase cells are passing on to new budding on glucose addition and phosphate excess. The enzyme under study releases orthophosphate from the very beginning of polyphosphate hydrolysis.
- Published
- 2006
- Full Text
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42. Accumulation of polyphosphates and expression of high molecular weight exopolyphosphatase in the yeast Saccharomyces cerevisiae.
- Author
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Kulakovskaya TV, Andreeva NA, Trilisenko LV, Suetin SV, Vagabov VM, and Kulaev IS
- Subjects
- Culture Media, Cytosol enzymology, Permeability, Phosphates chemistry, Phosphates metabolism, Polyphosphates chemistry, Saccharomyces cerevisiae enzymology, Spheroplasts enzymology, Spheroplasts metabolism, Time Factors, Acid Anhydride Hydrolases metabolism, Molecular Weight, Polyphosphates metabolism, Saccharomyces cerevisiae metabolism
- Abstract
The effect of cultivation time and concentration of inorganic phosphate (P(i)) in the culture medium on the accumulation of polyphosphates (polyP) and the activity of two cytosolic exopolyphosphatases of the yeast Saccharomyces cerevisiae was studied: an exopolyphosphatase of 40 kD encoded by PPX1 and a high molecular weight exopolyphosphatase encoded by another gene. Depletion of polyP in the cells on P(i) starvation is a signal factor for the accumulation of polyP after the subsequent addition of 5-20 mM P(i) and glucose to the cells or spheroplasts. A high activity of both exopolyphosphatases does not prevent the accumulation of polyP. The expression of the high molecular weight exopolyphosphatase is due to the acceleration of metabolism in cells that have reached the stage of growth deceleration on the addition of P(i) and glucose or complete culture medium. This process may occur independently from the accumulation of polyP. The activity of exopolyphosphatase PPX1 depends less on the mentioned factors, decreasing 10-fold only under conditions of phosphate surplus at the stationary growth stage.
- Published
- 2005
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- View/download PDF
43. [Peculiarities of metabolism and functions of high-molecular inorganic polyphosphates in yeasts as representatives of lower eukaryotes].
- Author
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Kulaev IS, Bagabov VM, Kulakovskaia TV, Andreeva NA, Lichko LP, and Trilisenko LV
- Subjects
- Cytosol enzymology, Inorganic Chemicals chemistry, Molecular Weight, Mutation, Polyphosphates chemistry, Saccharomyces cerevisiae genetics, Inorganic Chemicals metabolism, Polyphosphates metabolism, Saccharomyces cerevisiae metabolism
- Abstract
The review presents the recent data demonstrating the important role high-molecular inorganic polyphosphates in regulatory processes in a yeast cell. It has been shown that polyphosphates are localized in different cell compartments, where they are metabolized by a special set of enzymes. The review presents the evidence in favor of the concept of multiple functions of these biopolymers in a cell, as well as the data on the pleiotropic effects of mutations in the genes encoding the enzymes of polyphosphate metabolism.
- Published
- 2005
44. [Improving of the rat brain neurons and PC12 neuronal cells survival by gangliosides under oxidative stress].
- Author
-
Sokolova TV, Furaev VV, Viktorov IV, Andreeva NA, and Avrova NF
- Subjects
- Animals, Ascorbic Acid toxicity, Cell Survival drug effects, Cells, Cultured, Cerebellum cytology, Culture Media, Serum-Free, Ferrous Compounds toxicity, Glutamic Acid toxicity, Hydrogen Peroxide toxicity, L-Lactate Dehydrogenase metabolism, Neurons physiology, PC12 Cells, Rats, Rats, Wistar, Gangliosides pharmacology, Neurons drug effects, Neuroprotective Agents pharmacology, Oxidative Stress drug effects
- Published
- 2005
45. Role of mitochondria in the mechanisms of glutamate toxicity.
- Author
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Isaev NK, Andreeva NA, Stel'mashuk EV, and Zorov DB
- Subjects
- Calcium metabolism, Cytoplasm metabolism, Homeostasis, Membrane Potentials drug effects, Mitochondria metabolism, Mitochondria ultrastructure, Neurons drug effects, Neurons metabolism, Permeability, Receptors, Glutamate drug effects, Receptors, Glutamate metabolism, Excitatory Amino Acids physiology, Glutamic Acid toxicity, Mitochondria drug effects
- Abstract
Current data on glutamate-induced functional and morphological changes in mitochondria correlating with or being a result of their membrane potential changes are reviewed. The important role of Ca2+, Na+, and H+ in the potentiation of such changes is considered. It is assumed that glutamate-induced loss of mitochondrial potential is mediated by Ca2+ overload resulting in the induction of nonspecific permeability of the inner mitochondrial membrane.
- Published
- 2005
- Full Text
- View/download PDF
46. Culturing of specialized glial cells (olfactory ensheathing cells) of human olfactory epithelium.
- Author
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Savchenko EA, Andreeva NA, Dmitrieva TB, Viktorov IV, and Chekhonin VP
- Subjects
- Cells, Cultured, Humans, Immunohistochemistry, Neuroglia cytology, Olfactory Mucosa cytology
- Abstract
A monolayer of dissociated glial cells of human olfactory epithelium was cultured in Petri dishes and 12-well plates using a polylysine-laminin substrate. Primary cultures were subcultured after 10-15 days. The cell cultures were analyzed by phase contrast microscopy at all stages of culturing. A cytological study involved histological methods (trypan blue staining) and immunocytochemical visualization of GFAP, nestin, and low-affinity nerve growth factor receptors. At the final stage of culturing (5 passages) the monolayer cultures included 2 types of cells: GFAP- and p75-positive glial cells and nestin-positive fibroblasts.
- Published
- 2005
- Full Text
- View/download PDF
47. Menadione reduces rotenone-induced cell death in cerebellar granule neurons.
- Author
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Isaev NK, Stelmashook EV, Ruscher K, Andreeva NA, and Zorov DB
- Subjects
- Animals, Cell Death drug effects, Cell Death physiology, Cell Survival drug effects, Cell Survival physiology, Cells, Cultured, Cerebellum metabolism, Cerebellum pathology, Neurons metabolism, Neurons pathology, Rats, Rats, Wistar, Rotenone antagonists & inhibitors, Cerebellum drug effects, Neurons drug effects, Rotenone toxicity, Vitamin K 3 pharmacology
- Abstract
Oxidative stress has been implicated in neuronal death caused by cerebral ischemia or some neurologic disorders. Chemical hypoxia (term defining the simulation by using respiratory inhibitors) chosen as in vitro ischemic model, was induced in primary cultures of rat cerebellar granule neurons by inhibitors of mitochondrial electron transport such as rotenone or paraquat (complex I), 3-nitropropionic acid (3-NPA, complex II), antimycin A (complex III), or sodium azide (complex IV). All compounds caused neuronal death determined by trypan blue staining and MTT-test. On the other hand, neurotoxicity of rotenone and paraquat but not of 3-NPA, antimycin or azide was significantly abolished by menadione (vitamin K3, 2-methyl-1,4-naphthoquinone). This neuroprotective effect of menadione was associated with a decrease of rotenone-induced free radical production.
- Published
- 2004
- Full Text
- View/download PDF
48. Purification and properties of exopolyphosphatase from the cytosol of Saccharomyces cerevisiae not encoded by the PPX1 gene.
- Author
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Andreeva NA, Kulakovskaya TV, and Kulaev IS
- Subjects
- Acid Anhydride Hydrolases chemistry, Cytosol enzymology, Enzyme Inhibitors chemistry, Enzyme Stability, Hydrogen-Ion Concentration, Saccharomyces cerevisiae genetics, Acid Anhydride Hydrolases isolation & purification, Acid Anhydride Hydrolases metabolism, Saccharomyces cerevisiae enzymology
- Abstract
A novel exopolyphosphatase has been isolated from the cytosol of Saccharomyces cerevisiae grown to the stationary phase after its transfer from phosphate-deficient to complete medium. The PPX1 gene responsible for 40-kD exopolyphosphatase of the cytosol does not encode it. Specific activity of the preparation is 150 U/mg, purification degree is 319, and the yield is 16.9%. The minimal molecular mass of the active but unstable enzyme complex is approximately 125 kD. A stable enzyme complex with a molecular mass of approximately 500 kD is composed of two polypeptides of approximately 32 and 35 kD and apparently polyphosphates (polyP). Unlike the enzyme encoded by PPX1, the high-molecular-mass exopolyphosphatase is slightly active with polyP3, not inhibited by antibodies suppressing the activity of 40-kD exopolyphosphatase, inhibited by EDTA, and stimulated by divalent cations to a lesser extent. The high-molecular-mass exopolyphosphatase hydrolyzes polyP with an average chain length of 208 to 15 phosphate residues to the same extent, but is inactive with ATP, PPi, and p-nitrophenyl phosphate. The activity with polyP3 is 13% of that with polyP208. The Km values for polyP208, polyP15, and polyP3 hydrolysis are 3.5, 75, and 1100 microM, respectively. The enzyme is most active at pH approximately 7. Co2+ at the optimal concentration of 0.1 mM stimulates the activity 6-fold, while Mg2+ at the optimal concentration of 1 mM enhances it 2-fold. The enzyme under study is similar in some properties to an exopolyphosphatase purified earlier from yeast vacuoles.
- Published
- 2004
- Full Text
- View/download PDF
49. Effect of inhibitors on polyphosphate metabolism in the yeast Saccharomyces cerevisiae under hypercompensation conditions.
- Author
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Trilisenko LV, Andreeva NA, Kulakovskaya TV, Vagabov VM, and Kulaev IS
- Subjects
- Acid Anhydride Hydrolases antagonists & inhibitors, Acid Anhydride Hydrolases metabolism, Culture Media, Molecular Weight, Saccharomyces cerevisiae enzymology, Enzyme Inhibitors pharmacology, Polyphosphates metabolism, Saccharomyces cerevisiae drug effects, Saccharomyces cerevisiae metabolism
- Abstract
After re-inoculation of the yeast Saccharomyces cerevisiae from phosphate-deficient to complete medium, the total content of polyphosphates increased tenfold during 2 h (hypercompensation), but the content of certain fractions increased differently. The content of acid-soluble polyphosphate increased to the maximal extent. The ratio of the activities of two exopolyphosphatases also changed in the cytosol. Activity of a low molecular weight exopolyphosphatase (40 kD) decreased almost twice, whereas activity of a high molecular weight exopolyphosphatase (830 kD) increased tenfold. Cycloheximide blocks the increase in activity of high molecular weight exopolyphosphatase and hence, under these conditions the latter is synthesized de novo. Inhibitors of energy metabolism and cycloheximide, an inhibitor of protein synthesis, differently influence accumulation of certain polyphosphate fractions under hypercompensation conditions. The effect of iodoacetamide, an inhibitor of glycolysis, on any fraction is negligible, while cycloheximide suppresses accumulation of only polyP4 fraction associated with the cell envelope and bafilomycin A1, an inhibitor of vacuolar H+-ATPase, suppresses accumulation of polyP3 fraction. The protonophore carbonyl cyanide p-(trifluoromethoxy)phenylhydrazone (FCCP) to variable extent inhibits accumulation of all the fractions. Analysis of the effect of inhibitors on accumulation of polyphosphates under hypercompensation conditions confirms various localization, heterogeneity, and multiplicity of the routes of biosynthesis of certain fractions of these macroergic phosphorus compounds and also suggests interrelation between their biosynthesis and the gradient of H+ electrochemical potential.
- Published
- 2003
- Full Text
- View/download PDF
50. Exopolyphosphatases of the yeast Saccharomyces cerevisiae.
- Author
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Lichko LP, Andreeva NA, Kulakovskaya TV, and Kulaev IS
- Subjects
- Acid Anhydride Hydrolases chemistry, Acid Anhydride Hydrolases classification, Cations, Divalent metabolism, Edetic Acid pharmacology, Fungal Proteins metabolism, Heparin, Models, Biological, Phosphates metabolism, Saccharomyces cerevisiae cytology, Saccharomyces cerevisiae drug effects, Acid Anhydride Hydrolases metabolism, Saccharomyces cerevisiae enzymology
- Abstract
Separate compartments of the yeast cell possess their own exopolyphosphatases differing from each other in their properties and dependence on culture conditions. The low-molecular-mass exopolyphosphatases of the cytosol, cell envelope, and mitochondrial matrix are encoded by the PPX1 gene, while the high-molecular-mass exopolyphosphatase of the cytosol and those of the vacuoles, mitochondrial membranes, and nuclei are presumably encoded by their own genes. Based on recent works, a preliminary classification of the yeast exopolyphosphatases is proposed.
- Published
- 2003
- Full Text
- View/download PDF
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