6 results on '"Andrew J. Farrell"'
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2. Author Correction: Understanding the emergence of the boson peak in molecular glasses
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Mario González-Jiménez, Trent Barnard, Ben A. Russell, Nikita V. Tukachev, Uroš Javornik, Laure-Anne Hayes, Andrew J. Farrell, Sarah Guinane, Hans M. Senn, Andrew J. Smith, Martin Wilding, Gregor Mali, Motohiro Nakano, Yuji Miyazaki, Paul McMillan, Gabriele C. Sosso, and Klaas Wynne
- Subjects
Science - Published
- 2023
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3. Understanding the emergence of the boson peak in molecular glasses
- Author
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Mario González-Jiménez, Trent Barnard, Ben A. Russell, Nikita V. Tukachev, Uroš Javornik, Laure-Anne Hayes, Andrew J. Farrell, Sarah Guinane, Hans M. Senn, Andrew J. Smith, Martin Wilding, Gregor Mali, Motohiro Nakano, Yuji Miyazaki, Paul McMillan, Gabriele C. Sosso, and Klaas Wynne
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Multidisciplinary ,General Physics and Astronomy ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology - Abstract
One of the common features of a glass is the so-called “boson peak”, observed as an excess in the heat capacity over the crystal or as an additional peak in the terahertz vibrational spectrum. The microscopic origins of the boson peak are controversial, albeit the emergence of locally ordered structures inhibiting crystallisation has been put forward as a possible culprit. Unfortunately, the terahertz spectral range is often congested with many other contributions complicating observation of the boson feature. Here, we show that depolarised Raman scattering—obtained using femtosecond optical Kerr-effect spectroscopy in liquids consisting of highly symmetric molecules—can be used to isolate the boson peak, allowing its detailed observation over a wide range of temperatures from the (supercooled) liquid into the glass. The boson peak in the vibrational spectrum matches the excess heat capacity observed in low-temperature heat capacity measurements. As the boson peak intensifies on cooling towards the glass transition, wide-angle x-ray scattering shows the simultaneous appearance of a pre-peak due to molecular clusters consisting of circa 20 molecules. Atomistic molecular dynamics simulations—reproducing both boson and pre peaks—indicate that these clusters are caused by over-coordinated molecules tending towards but prevented from attaining crystalline structural order. These findings represent an essential step toward our understanding of the physics of vitrification.
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- 2022
4. Characterisation of the Boson Peak from the Glass into the Liquid
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Klaas Wynne, David A. Turton, Hans Martin Senn, Russell Ba, N.V. Tukachev, Guinane S, Mario González Jiménez, and Andrew J. Farrell
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Materials science ,Intermolecular force ,Nucleation ,law.invention ,Crystal ,symbols.namesake ,law ,Chemical physics ,Femtosecond ,symbols ,Crystallization ,Raman spectroscopy ,Supercooling ,Raman scattering - Abstract
Phenomena ranging from vitrification to crystal nucleation are governed by locally ordered structures, in otherwise disordered phases, that can either inhibit or favour the growth of macroscopic order. However, such structures are ephemeral, do not typically have distinct spectral features, and are therefore critically important but largely unobservable by current methods. Illuminating these structures therefore presents the single greatest challenge in physical chemistry. The boson peak is characteristic of glasses and represents the locally ordered structures inhibiting crystallisation but is typically obscured by other spectral contributions. Here we show that depolarised Raman scattering—obtained using femtosecond optical Kerr-effect spectroscopy—in liquids consisting of highly symmetric molecules can be used to isolate the boson peak thereby allowing detailed characterisation of the intermolecular potential-energy landscape for the first time.
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- 2021
5. Low-Frequency (Gigahertz to Terahertz) Depolarized Raman Scattering Off
- Author
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Andrew J, Farrell, Mario, González-Jiménez, Gopakumar, Ramakrishnan, and Klaas, Wynne
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Physics::Chemical Physics ,Article - Abstract
Molecular liquids have long been known to undergo various distinct intermolecular motions, from fast librations and cage-rattling oscillations to slow orientational and translational diffusion. However, their resultant gigahertz to terahertz spectra are far from simple, appearing as broad shapeless bands that span many orders of magnitude of frequency, making meaningful interpretation troublesome. Ad hoc spectral line shape fitting has become a notoriously fine art in the field; a unified approach to handling such spectra is long overdue. Here we apply ultrafast optical Kerr-effect (OKE) spectroscopy to study the intermolecular dynamics of room-temperature n-alkanes, cycloalkanes, and six-carbon rings, as well as liquid methane and propane. This work provides stress tests and converges upon an experimentally robust model across simple molecular series and range of temperatures, providing a blueprint for the interpretation of the dynamics of van der Waals liquids. This will enable the interpretation of low-frequency spectra of more complex liquids.
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- 2020
6. Whole-genome analysis for effective clinical diagnosis and gene discovery in early infantile epileptic encephalopathy
- Author
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Joshua L. Bonkowsky, Brent S. Pedersen, Chase Miller, Aaron R. Quinlan, Meghan Candee, Tara M. Newcomb, Betsy Ostrander, Russell J. Butterfield, Ryan M. Layer, Gabor T. Marth, Alistair Ward, Andrew J. Farrell, Francis Filloux, and Tonya DiSera
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0301 basic medicine ,lcsh:QH426-470 ,lcsh:Medicine ,Biology ,medicine.disease_cause ,Genome ,DNA sequencing ,Article ,03 medical and health sciences ,0302 clinical medicine ,Genetics ,medicine ,Indel ,Molecular Biology ,Gene ,Exome ,Genetics (clinical) ,Exome sequencing ,Mutation ,lcsh:R ,3. Good health ,lcsh:Genetics ,030104 developmental biology ,Epilepsy syndromes ,030217 neurology & neurosurgery - Abstract
Early infantile epileptic encephalopathy (EIEE) is a devastating epilepsy syndrome with onset in the first months of life. Although mutations in more than 50 different genes are known to cause EIEE, current diagnostic yields with gene panel tests or whole-exome sequencing are below 60%. We applied whole-genome analysis (WGA) consisting of whole-genome sequencing and comprehensive variant discovery approaches to a cohort of 14 EIEE subjects for whom prior genetic tests had not yielded a diagnosis. We identified both de novo point and INDEL mutations and de novo structural rearrangements in known EIEE genes, as well as mutations in genes not previously associated with EIEE. The detection of a pathogenic or likely pathogenic mutation in all 14 subjects demonstrates the utility of WGA to reduce the time and costs of clinical diagnosis of EIEE. While exome sequencing may have detected 12 of the 14 causal mutations, 3 of the 12 patients received non-diagnostic exome panel tests prior to genome sequencing. Thus, given the continued decline of sequencing costs, our results support the use of WGA with comprehensive variant discovery as an efficient strategy for the clinical diagnosis of EIEE and other genetic conditions., Pediatric neurology: whole-genome analysis finds mutations causing severe newborn seizures Whole-genome sequencing combined with specialized bioinformatics can diagnose disease mutations in newborns with devastating seizures. Josh Bonkowsky, Gabor Marth, Aaron Quinlan, and colleagues from the University of Utah in Salt Lake City, USA, thoroughly detailed the genomic variation of 14 babies with early infantile epileptic encephalopathy (EIEE). EIEE is a severe pediatric neurodevelopmental disorder causing seizures and early death. In the 14 infants, who had previous testing that did not identify the cause, the research team found the genetic cause for all of the infants. Prior to this work, approaches for EIEE diagnosed only up to 60% of infants. With the cost of DNA sequencing continuing to fall, the authors suggest that whole-genome testing could be a cost-effective approach to diagnosing EIEE and other genetic conditions.
- Published
- 2018
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