Search

The interaction of slow ions ( v ∼ 0.4 a.u. ) with a small polycyclic aromatic hydrocarbon, namely anthracene (C 14 H 10 ), is studied in the gas-phase either with the isolated molecule or with a pure cluster target. We discuss the ionization and fragmentation of the molecule with respect to the projectile charge state, i.e. for singly charged He + ions and for multiply charged Xe 20+ ions. For the isolated C 14 H 10 , single or multiple ionization of the molecule occurs under ion impact. The (multi) cation relative yields are compared with those obtained by other ionization methods (electron and fs-laser). The molecular dissociation occurs by loss of hydrogen and small hydrocarbon molecules, leading to the formation of C n H x cations. The interaction of Xe 20+ with C 14 H 10 clusters gives surprising results, i.e. the emission of hotter monomer compared to the interaction with He + .

Transition metal cations Co2+, Ni2+ and Zn2+ form 1 : 1 : 1 ternary complexes with 2,2′-bipyridine (bpy) and peptides in aqueous methanol solutions that have been studied for tripeptides GGG and GGL. Electrospray ionization of these solutions produced singly charged [Metal(bpy)(peptide − H)]+ and doubly charged [Metal(bpy)(peptide)]2+ ions (Metal = metal ion) that underwent charge reduction by glancing collisions with Cs atoms at 50 and 100 keV collision energies. Electron transfer to [Metal(bpy)(peptide)]2+ ions was less than 4.2 eV exoergic and formed abundant fractions of non-dissociated charge-reduced intermediates. Charge-reduced [Metal(bpy)(peptide)]+ ions dissociated by the loss of a hydrogen atom, ammonia, water and ligands that depended on the metal ion. The Ni and Co complexes mainly dissociated by the elimination of ammonia, water, and the peptide ligand. The Zn complex dissociated by the elimination of ammonia and bpy. A sequence-specific fragment was observed only for the Co complex. Electron transfer to [Metal(bpy)(peptide − H)]+ was 0.6–1.6 eV exoergic and formed intermediate radicals that were detected as stable anions after a second electron transfer from Cs. [Metal(bpy)(peptide − H)] neutrals and their anions dissociated by the loss of bpy and peptide ligands with branching ratios that depended on the metal ion. Optimized structures for several spin states, electron transfer and dissociation energies were addressed by combined density functional theory and Moller–Plesset perturbational calculations to aid interpretation of experimental data. The experimentally observed ligand loss and backbone cleavage in charge-reduced [Metal(bpy)(peptide)]+ complexes correlated with the dissociation energies at the present level of theory. The ligand loss in +CR− spectra showed overlap of dissociations in charge-reduced [Metal(bpy)(peptide − H)] complexes and their anionic counterparts which complicated spectra interpretation and correlation with calculated dissociation energies. Copyright © 2009 John Wiley & Sons, Ltd.

Electron-induced dissociations of gas-phase ternary copper-2,2′-bipyridine complexes of Gly-Gly-Gly and Gly-Gly-Leu were studied on a time scale ranging from 130 ns to several milliseconds using a combination of charge-reversal (+CR−) and electron-capture-induced dissociation (ECID) measured on a beam instrument and electron capture dissociation (ECD) measured in a Penning trap. Charge-reduced intermediates were observed on the short time scale in the +CR− and ECID experiments but not in ECD. Ion dissociations following electron transfer or capture mostly occurred by competitive bpy or peptide ligand loss, whereas peptide backbone fragmentations were suppressed in the presence of the ligated metal ion. Extensive electron structure theory calculations using density functional theory and large basis sets provided optimized structures and energies for the precursor ions, charge-reduced intermediates, and dissociation products. The Cu complexes underwent substantial structure changes upon electron capture. Cu was calculated to be pentacoordinated in the most stable singly charged complexes of the [Cu(peptide − H)bpy]+ • type where it carried a ∼+ 1 atomic charge. Cu coordination in charge-reduced [Cu(peptide − H)bpy] intermediates depended on the spin state. The themodynamically more stable singlet states had tricoordinated Cu, whereas triplet states had a tetracoordinated Cu. Cu was tricoordinated in stable [Cu(peptide − H)bpy]− • products of electron transfer. [Cu(peptide)bpy]2 + • complexes contained the peptide ligand in a zwitterionic form while Cu was tetracoordinated. Upon electron capture, Cu was tri- or tetracoordinated in the [Cu(peptide)bpy]+ charge-reduced analogs and the peptide ligands underwent prototropic isomerization to canonical forms. The role of excited singlet and triplet electronic states is assessed. Copyright © 2009 John Wiley & Sons, Ltd.

Absorption and circular dichroism measurements were performed on specifically chosen DNA mononucleotides, dinucleotides and oligonuclotides with combinations of adenine (A) and thymine (T), namely 2′-deoxyadenosine 5′-monophosphate (dAMP), thymidine 5′-monophosphate (TMP), dApdA, dTpdT, dApdT, dTpdA and dAp(dTp) n dA ( n = 1, 2 or 3) to study the importance of electronic coupling between bases for various bands. The coupling is stronger in the VUV region than in the UV region. In the VUV, it is possible to distinguish between dApdT and dTpdA sequences whereas in the UV the spectra are almost identical. A simple sequence dependent nearest neighbour model is used to explain the observations from both types of spectroscopy, underlining the importance of not only the nature of nearest neighbour nucleobases but the sequence as well.

Ion nanocalorimetry is used to measure the effects of electron kinetic energy in electron capture dissociation (ECD). With ion nanocalorimetry, the internal energy deposited into a hydrated cluster upon activation can be determined from the number of water molecules that evaporate. Varying the heated cathode potential from -1.3 to -2.0 V during ECD has no effect on the average number of water molecules lost from the reduced clusters of either [Ca(H2O)15]2+ or [Ca(H2O)32]2+, even when these data are extrapolated to a cathode potential of zero volts. These results indicate that the initial electron kinetic energy does not go into internal energy in these ions upon ECD. No effects of ion heating from inelastic ion-electron collisions are observed for electron irradiation times up to 200 ms, although some heating occurs for [Ca(H2O)17]2+ at longer irradiation times. In contrast, this effect is negligible for [Ca(H2O)32]2+, a cluster size typically used in nanocalorimetry experiments, indicating that energy transfer from inelastic ion-electron collisions is negligible compared with effects of radiative absorption and emission for these larger clusters. These results have significance toward establishing the accuracy with which electrochemical redox potentials, measured on an absolute basis in the gas phase using ion nanocalorimetry, can be related to relative potentials measured in solution.

Electronic coupling between DNA bases governs the deexcitation pathways after light absorption as well as the ability of the DNA strand to conduct charge. UV excitation of single strands of adenine bases involves two adjacent bases while the spatial extent of the excited state wavefunction following VUV excitation is over eight bases. In this work, we have recorded synchrotron radiation circular dichroism spectra for a series of DNA strands on the form A(n)T(m)A(n), n = 1-5 and m = 1-3, in aqueous solution to study the effect of introducing thymine spacers on the electronic coupling between the adenines. We find that a single thymine spacer is enough to eliminate the strong coupling between the adenine bases for all excitation wavelengths between 175 nm and 330 nm.

The residual activity induced in particle accelerators is a serious issue from the point of view of radiation safety as the long-lived radionuclides produced by fast or moderated neutrons and impact protons cause problems of radiation exposure for staff involved in the maintenance work and when decommissioning the facility. This paper presents activation studies of the magnets and collimators in the High Energy Beam Transport line of the European Spallation Source due to the backscattered neutrons from the target and also due to the direct proton interactions and their secondaries. An estimate of the radionuclide inventory and induced activation are predicted using the GEANT4 code.

International audience; Complex molecular systems such as large molecules or clusters are characterised by a large number of degrees of freedom. Energies well in excess of individual thresholds for fragmentation can be stored for long times and metastable excited states become important. We will concentrate in this paper on the study of the response of such nanoscale systems, i.e. we will study excitation and fragmentation mechanisms induced by highly charged ion radiation, reflecting dynamic energy and charge flow processes. We will illustrate these relaxation processes for different molecular systems from Polycyclic Aromatic Hydrocarbons, water or biomolecule targets and their clusters in collision with multiply charged ions. We will emphasize that slow multiply charged ions provide an efficient way to study the stability of complex systems. Indeed, such ions are known to remove several electrons at large impact parameters resulting in a fast and gentle ionization.

Here, we present synchrotron radiation circular dichroism spectra for a series of DNA adenine strands, (dA)(n) , n = 2-10, 15, at acidic pH. Reference spectra of a protonated single strand, (dAH(+) )(n) , and a protonated double helix, (dAH(+) )(n) :(dAH(+) )(n) , are provided in the wavelength region from 175 to 330 nm. The largest spectral difference between single and double strands is in the vacuum ultraviolet, where a band changes sign. This new spectral feature that characterizes double helix formation may be useful for analytical purposes but also for shedding light on the underlying complexation mechanism. Furthermore, we find that a minimum of eight or nine bases in a strand is needed for two (dAH(+) )(n) strands to form a duplex. This is a relatively high number as compared with guanine quadruplex and cytosine i-motif formation, which is likely linked to the significant Coulomb repulsion between the all-protonated bases. Finally, spectra recorded as a function of time after sample preparation indicates that the equilibrium is slowly reached, in certain cases taking an hour or more.

In this thesis a series of experiments on collisions between atomic projectile ions at keV energies and target vapors of either isolated molecules or van der Waals clusters is presented and analyzed. The atomic ions are produced in an Electron Cyclotron Resonance (ECR) ion source, accelerated and guided into the target volume. The charged target collision products are mass-to-charge analyzed in a time-of-flight spectrometer. The Polycyclic Aromatic Hyrdrocarbons (PAHs) Anthracene (C14H10), Coronene (C24H12), two C16H10 isomers, Pyrene and Fluoranthene, and the fullerene C60 are examined.For projectile ions in low charge states, small impact parameter collisions dominate, which leads to internal heating of the target. With isolated molecules as targets, this typically results in ionization and often also in fragmentation. For cluster targets energy and charge are rapidly distributed among the cluster building blocks. This is followed by cluster evaporation and very limited fragmentation of the individual molecules. C119+ and C118+ are observed as products. These are due to the formation of the reactive C58/59+ ions by direct knockout processes, which react with another C60 of the cluster to form dumb-bell shaped molecules.For projectile ions of high charge (Xe20+) larger impact parameters dominate, leading to little internal heating. For isolated molecule targets, intact molecular ions are the main collision products. Charged fragments stem mostly from multifragmentation following ionization to high charge states. For cluster targets, the collision products consist mainly of singly charged monomers. Fragmentation of the individual molecules is comparatively strong. This suggests a quick distribution of charges followed by a Coulomb explosion, which leads to internal heating.The results show that weakly bound clusters do not sustain the impact of keV-ions and that it is possible to form new molecular structures.

The loss of C(2)H(2) is a low activation energy dissociation channel for anthracene (C(14)H(10)) and acridine (C(13)H(9)N) cations. For the latter ion another prominent fragmentation pathway is the loss of HCN. We have studied these two dissociation channels by collision induced dissociation experiments of 50 keV anthracene cations and protonated acridine, both produced by electrospray ionization, in collisions with a neutral xenon target. In addition, we have carried out density functional theory calculations on possible reaction pathways for the loss of C(2)H(2) and HCN. The mass spectra display features of multi-step processes, and for protonated acridine the dominant first step process is the loss of a hydrogen from the N site, which then leads to C(2)H(2)/HCN loss from the acridine cation. With our calculations we have identified three pathways for the loss of C(2)H(2) from the anthracene cation, with three different cationic products: 2-ethynylnaphthalene, biphenylene, and acenaphthylene. The third product is the one with the overall lowest dissociation energy barrier. For the acridine cation our calculated pathway for the loss of C(2)H(2) leads to the 3-ethynylquinoline cation, and the loss of HCN leads to the biphenylene cation. Isomerization plays an important role in the formation of the non-ethynyl containing products. All calculated fragmentation pathways should be accessible in the present experiment due to substantial energy deposition in the collisions.

We report on measurements of the ionization and fragmentation of polycyclic aromatic hydrocarbon (PAH) targets in Xe(20+) + C(16)H(10) and Xe(20+) + [C(16)H(10)](k) collisions and compare results for the two C(16)H(10) isomers: pyrene and fluoranthene. For both types of targets, i.e., for single PAH molecules isolated in vacuum or for isomerically pure clusters of one of the molecules, the resulting fragment spectra are surprisingly similar. However, we do observe weak but significant isomer effects. Although these are manifested in very different ways for the monomer and cluster targets, they both have at their roots small differences (2.5 eV) between the total binding energies of neutral, and singly and multiply charged pyrene and fluoranthene monomers. The results will be discussed in view of the density functional theory calculations of ionization and dissociation energies for fluoranthene and pyrene. A simple classical over-the-barrier model is used to estimate cross sections for single- and multiple-electron transfer between PAHs and ions. Calculated single and multiple ionization energies, and the corresponding model PAH ionization cross sections, are given.

We discuss the ionization and fragmentation of isolated monomers and cold clusters of polycyclic aromatic hydrocarbon (PAH) molecules in collisions with keV ions in low or high charge states. With low charge state projectile ions, PAH cluster or monomer targets are thermally excited through electronic stopping processes directly in close peripheral or penetrating collisions while only single or few electrons are removed. With high charge state projectiles, electrons are very effectively removed from both the cluster and the monomer target already at very large distances with very little direct target heating. Singly charged and internally very hot PAH monomers are dominant fragmentation products following collisions between Xe20+ ions and PAH clusters. We suggest that this due to an unusually strong dominance of multiple-ionization over single ionization for PAH clusters interacting with highly charged ions. Here, charge and excitation energy is very rapidly redistributed within the clusters before they Coulomb explode and we suggest that these Coulomb explosions induce strong internal heating in the individual PAH molecules. We thus conclude that PAH cluster fragmentation always dominates strongly for all ionization processes regardless if these are due to interactions with ions in high or low charge states. These findings are discussed in view of simple models for cluster evaporation or single and multiple ionizations of PAH clusters.

We have performed density functional theory calculations for a range of neutral, singly, and multiply charged polycyclic aromatic hydrocarbons (PAHs), and their fragmentation products for H-, H(+)-, C(2)H(2)-, and C(2)H(2)(+)-emissions. The adiabatic and vertical ionization energies follow linear dependencies as functions of charge state for all five intact PAHs (naphthalene, biphenylene, anthracene, pyrene, and coronene). First estimates of the total ionization and fragmentation cross sections in ion-PAH collisions display markedly different size dependencies for pericondensed and catacondensed PAH species, reflecting differences in their first ionization energies. The dissociation energies show that the PAH(q+)-molecules are thermodynamically stable for q ≤ 2 (naphthalene, biphenylene, and anthracene), q ≤ 3 (pyrene), and q ≤ 4 (coronene). PAHs in charge states above these limits may also survive experimental time scales due to the presence of reaction barriers as deduced from explorations of the potential energy surface regions for H(+)-emissions from all five PAHs and for C(2)H(2)(+)-emission from naphthalene--the smallest PAH.

Circular dichroism (CD) is a powerful technique to obtain information on electronic transitions and has been used extensively for studies on DNA. Most experiments are done in the UV region but new information is often revealed from extending the wavelength region down into the vacuum ultraviolet (VUV) region. Such experiments are most easily carried out with synchrotron radiation (SR) light sources that provide large photon fluxes. Here we provide a summary of the SRCD data taken on different DNA strands with emphasis on results from our own laboratory within the last five years.(1-3) Signal intensities in the VUV are often significantly larger than those in the UV, and the electronic coupling between bases may increase with excitation energy. CD spectroscopy is particularly useful for investigating the extent of electronic coupling within a strand, i.e., the degree of delocalisation of the excited-state electronic wavefunction. The spatial extent of the wavefunction may be limited to just one base or it extends over two or more bases in a stack or between bases on different strands.(4,5) The actual character of the electronically excited state is linked to base composition and sequence as well as DNA folding motif (A-, B-, Z-DNA, triplexes, quadruplexes, etc.). The latter depends on experimental conditions such as solution acidity, temperature, ionic strength, and solvent.

In this work we have recorded synchrotron radiation circular dichroism (SRCD) spectra from 180 nm to 360 nm of cytosine strands [(dC)(n), n = 1, 2, ..., 10] in aqueous solution at different pH values to reveal electronic coupling between bases in different ionisation states. The geometry of the strands is determined by the pH value and the strand length and the local organisation of the cytosines will determine the base-to-base interaction that impacts on the CD signal. At low pH where all bases are protonated, there is no signature of electronic coupling between the bases, and the SRCD spectrum is simply n times that of the n = 1 spectrum. At higher pH where all bases are neutral, the spectra for n1 differ from the monomer spectrum, which implies electronic coupling between bases. The correlation between the CD signal and n is linear, and the spatial extent of the excited state wavefunction is therefore over just two stacked bases both in the UV and VUV. At intermediate pH, the low-n spectra are different from the high-n spectra, and a transition is seen to occur at n = 6-8. We ascribe this behavior to the formation of i-motif structures between four (dC)(n) strands for high n.

International audience; Electron-transfer and -capture dissociations of doubly protonated peptides gave dramatically different product ions for a series of histidine-containing pentapeptides of both non-tryptic (AAHAL, AHAAL, AHADL, AHDAL) and tryptic (AAAHK, AAHAK, AHAAK, HAAAK, AAAHR, AAHAR, AHAAR, HAAAR) type. Electron transfer from gaseous Cs atoms and fluoranthene anions triggered backbone dissociations of all four N-C(alpha) bonds in the peptide ions in addition to loss of H and NH(3). Substantial fractions of charge-reduced cation-radicals did not dissociate on an experimental time scale ranging from 10(-6) to 10(-1) s. Multistage tandem mass spectrometric (MS(n)) experiments indicated that the non-dissociating cation-radicals had undergone rearrangements. These were explained as being due to proton migrations from N-terminal ammonium and COOH groups to the C-2' position of the reduced His ring, resulting in substantial radical stabilization. Ab initio calculations revealed that the charge-reduced cation-radicals can exist as low-energy zwitterionic amide pi* states which were local energy minima. These states underwent facile exothermic proton migrations to form aminoketyl radical intermediates, whereas direct N-C(alpha) bond cleavage in zwitterions was disfavored. RRKM analysis indicated that backbone N-C(alpha) bond cleavages did not occur competitively from a single charge-reduced precursor. Rather, these bond cleavages proceeded from distinct intermediates which originated from different electronic states accessed by electron transfer. In stark contrast to electron transfer, capture of a free electron by the peptide ions mainly induced radical dissociations of the charge-carrying side chains and loss of a hydrogen atom followed by standard backbone dissociations of even-electron ions. The differences in dissociation are explained by different electronic states being accessed upon electron transfer and capture.

International audience; We report the first experimental study of ions interacting with clusters of polycyclic aromatic hydrocarbon (PAH) molecules. Collisions between 11.25 keV 3He+ or 360 keV 129Xe20+ and weakly bound clusters of one of the smallest PAH molecules, anthracene, show that C14H10 clusters have much higher tendencies to fragment in ion collisions than other weakly bound clusters. The ionization is dominated by peripheral collisions in which the clusters, very surprisingly, are more strongly heated by Xe20+ collisions than by He+ collisions. The appearance size is k = 15 for [C14H10]2+k

Here we report synchrotron radiation circular dichroism spectra of various G-quadruplexes from 179 to 350 nm, and a number of bands in the vacuum ultraviolet (VUV) are reported for the first time. For a tetramolecular parallel structure, the strongest band in the spectrum is a negative band in the VUV at 182 nm; for a bimolecular antiparallel structure with diagonal loops, a new strong positive band is found at 190 nm; for a bimolecular parallel structure with edgewise loops, a strong positive band at 189 nm is observed; and for a self-folded chair-type structure, the strongest band in the spectrum is a positive band at 187 nm. For the tetramolecular parallel structure, the CD signals at all wavelengths are dominated by contributions from quartets of G bases, and the signal strength is approximately proportional to the number of quartets. Our experiments on well-characterized G-quadruplex structures lead us to question past attributions of CD signals to helix handedness and G quartet polarity. Although differences can be observed in the VUV region for the various quadruplex types, there do not appear to be clear-cut spectral features that can be used to identify specific topological features. It is suggested that this is because a dominant positive band in the VUV seen near 190 nm in all quadruplex structures is due to intrastrand guanine–guanine base stacking. However, our spectra can serve as reference spectra for the G-quadruplex structures investigated and, not least, to benchmark theoretical calculations and empirical models. © 2009 Wiley Periodicals, Inc. Biopolymers 93: 429–433, 2010. This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com

Electron capture by peptide dications results in N–C α bond cleavage to give c + and z or c and z + fragments. In this work we have investigated how crown ether (18-crown-6 = CE) complex formation and a change in the internal energy affect the charge division between the z and c fragments. Both complex formation and a high temperature have the effect of breaking internal ionic hydrogen bonds. The crown ether complex also lowers the probability of internal proton transfer between the two fragments, and reduces the recombination energy of the charged group it targets. The systems under study were doubly protonated di- and tripeptides, [AK+2H] 2+ , [AR+2H] 2+ , [KK+2H] 2+ and [GHK+2H] 2+ (A = alanine, K = lysine, R = arginine, G = glycine and H = histidine). For crown ether complexes the formation of z + ions was always preferred over c + ions. In the case of [GHK+2H] 2+ , the bare ion dissociated into z 2 + + c 1 and z 1 + c 2 + from cleavage of the first and second N–C α bond, respectively, whereas z 1 + fragment ions had higher yield than c 2 + for [GHK+2H] 2+ (CE). The internal energy of the ions was changed by storing them in a 22-pole ion trap in which they were equilibrated to a temperature between −60 and 90 °C in collisions with helium gas. The average internal energy increased by about 0.4 eV from the lowest to the highest temperature for the dipeptides and 0.6 eV for the tripeptide. More fragmentation occurred at the higher temperature, as observed by an increase in the formation of b + and y + ions after breakage of the peptide bond of vibrationally hot even-electron cations and from secondary reactions of z + radical cations within the time window of the experiment. However, the z + to c + partitioning was not found to depend significantly on temperature in the measured range. In addition the decay of [GHK+H] + /[GHK+2H] + and [AK+H] + formed after electron capture by [GHK+2H] 2+ and [AK+2H] 2+ was found to occur on a microsecond to millisecond timescale. The data are well described by a power-law decay, which implies that the internal energy distribution is broad after electron capture and/or hydrogen loss.

The results from an experimental study of bare and microsolvated peptide monocations in high-energy collisions with cesium vapor are reported. Neutral radicals form after electron capture from cesium, which decay by H loss, NH(3) loss, or N-C(alpha) bond cleavage into characteristic z(*) and c fragments. The neutral fragments are converted into negatively charged species in a second collision with cesium and are identified by means of mass spectrometry. For protonated GA (G = glycine, A = alanine), the branching ratio between NH(3) loss and N-C(alpha) bond cleavage is found to strongly depend on the molecule attached (H(2)O, CH(3)CN, CH(3)OH, and 18-crown-6 ether (CE)). Addition of H(2)O and CH(3)OH increases this ratio whereas CH(3)CN and CE decrease it. For protonated AAA ([AAA+H](+)), a similar effect is observed with methanol, while the ratio between the z(1) and z(2) fragment peaks remains unchanged for the bare and microsolvated species. Density functional theory calculations reveal that in the case of [GA+H](+)(CE), the singly occupied molecular orbital is located mainly on the amide group in accordance with the experimental results.

Synchrotron radiation circular dichroism (SRCD) spectra were recorded for a family of 12 DNA duplexes that all contain nine adenines (A) and nine thymines (T) in each strand but in different combinations. The total number of AT Watson-Crick (WC) base pairs is constant (18), but the number of cross-strand (CS) hydrogen bonds between A and T varies between 0 and 16, the maximum possible. Eleven of the duplexes have one or more A tracts, and one duplex has T tracts. The signals due to hybridization were found from subtraction of spectra of single strands from spectra of the duplexes. The residual spectrum of the T-tract duplex T9A9:A9T9 (5'-3':3'-5') significantly differs from that of the A-tract duplex A 9T9:T9A9, but only below 210 nm, which suggests that the signal in this region depends on the superhelicity of the duplex. A principal component analysis of all residual spectra reveals that spectra of A-tract duplexes can be obtained to a good approximation as a linear combination of just two basis spectra. The first component is assigned to the spectrum of 18 WC and 8 CS pairs, whereas the second component is that of 8 CS pairs. This interpretation is supported by separate experiments on duplexes of varying lengths but with similar arrangements of the A and T's and by experiments on two other duplex families of 14 and 30 base pairs. The best correlation is obtained by the assumption that cross-strand interactions occur as long as there are two adenine neighbors in a strand. Our data indicate that a circular dichroism spectrum of a duplex containing only A and T can simply be inferred from the number of WC base pairs and the number of CS interactions, and we provide reference spectra for these two interactions. Finally, time dependent density functional theory calculations of the circular dichroism spectra for an isolated WC base pair and two different CS base pairs (between adenine N-6 amine and thymine O-4 or between adenine C-2-H and thymine O-2) were performed to provide some additional support for the interpretation of the experimental spectra. We find large differences between the two calculated CS spectra. However, there is a reasonable qualitative agreement between the calculated WC and the C-2-H···O-2 CS spectra and those deduced from the experimental data. © 2009 American Chemical Society., This work was supported by Lundbeckfonden, the Danish Natural Science Research Council (No. 272-06-0427), Carlsbergfondet (Grant 2006-01-0229), and by the European Commission through the IST FET-Open project DNANANODEVICES (Contract No. FP6-029192) and the e-I3 ETSF project (Contract No. 211956). We acknowledge funding by the Spanish MEC (FIS2007-65702-C02-01), “Grupos Consolidados UPV/EHU del Gobierno Vasco” (IT-319-07), CSIC, and “Red Espanola de Supercomputacion”.

Ion nanocalorimetry is used to investigate the internal energy deposited into M (2+)(H 2O) n , M = Mg ( n = 3-11) and Ca ( n = 3-33), upon 100 keV collisions with a Cs or Ne atom target gas. Dissociation occurs by loss of water molecules from the precursor (charge retention) or by capture of an electron to form a reduced precursor (charge reduction) that can dissociate either by loss of a H atom accompanied by water molecule loss or by exclusively loss of water molecules. Formation of bare CaOH (+) and Ca (+) by these two respective dissociation pathways occurs for clusters with n up to 33 and 17, respectively. From the threshold dissociation energies for the loss of water molecules from the reduced clusters, obtained from binding energies calculated using a discrete implementation of the Thomson liquid drop model and from quantum chemistry, estimates of the internal energy deposition can be obtained. These values can be used to establish a lower limit to the maximum and average energy deposition. Not taking into account effects of a kinetic shift, over 16 eV can be deposited into Ca (2+)(H 2O) 33, the minimum energy necessary to form bare CaOH (+) from the reduced precursor. The electron capture efficiency is at least a factor of 40 greater for collisions of Ca (2+)(H 2O) 9 with Cs than with Ne, reflecting the lower ionization energy of Cs (3.9 eV) compared to Ne (21.6 eV). The branching ratio of the two electron capture dissociation pathways differs significantly for these two target gases, but the distributions of water molecules lost from the reduced precursors are similar. These results suggest that the ionization energy of the target gas has a large effect on the electron capture efficiency, but relatively little effect on the internal energy deposited into the ion. However, the different branching ratios suggest that different electronic excited states may be accessed in the reduced precursor upon collisions with these two different target gases.

The effects of water on electron capture dissociation products, molecular survival, and recombination energy are investigated for diprotonated Lys-Tyr-Lys solvated by between zero and 25 water molecules. For peptide ions with between 12 and 25 water molecules attached, electron capture results in a narrow distribution of product ions corresponding to primarily the loss of 10-12 water molecules from the reduced precursor. From these data, the recombination energy (RE) is determined to be equal to the energy that is lost by evaporating on average 10.7 water molecules, or 4.3 eV. Because water stabilizes ions, this value is a lower limit to the RE of the unsolvated ion, but it indicates that the majority of the available RE is deposited into internal modes of the peptide ion. Plotting the fragment ion abundances for ions formed from precursors with fewer than 11 water molecules as a function of hydration extent results in an energy resolved breakdown curve from which the appearance energies of the b 2 (+), y 2 (+), z 2 (+*), c 2 (+), and (KYK + H) (+) fragment ions formed from this peptide ion can be obtained; these values are 78, 88, 42, 11, and 9 kcal/mol, respectively. The propensity for H atom loss and ammonia loss from the precursor changes dramatically with the extent of hydration, and this change in reactivity can be directly attributed to a "caging" effect by the water molecules. These are the first experimental measurements of the RE and appearance energies of fragment ions due to electron capture dissociation of a multiply charged peptide. This novel ion nanocalorimetry technique can be applied more generally to other exothermic reactions that are not readily accessible to investigation by more conventional thermochemical methods.

A gaseous nanocalorimetry approach is used to investigate effects of hydration and ion identity on the energy resulting from ion–electron recombination. Capture of a thermally generated electron by a hydrated multivalent ion results in either loss of a H atom accompanied by water loss or exclusively loss of water. The energy resulting from electron capture by the precursor is obtained from the extent of water loss. Results for large-size-selected clusters of Co(NH 3 ) 6 (H 2 O) n 3 + and Cu(H 2 O) n 2 + indicate that the ion in the cluster is reduced on electron capture. The trend in the data for Co(NH 3 ) 6 (H 2 O) n 3 + over the largest sizes ( n ≥ 50) can be fit to that predicted by the Born solvation model. This agreement indicates that the decrease in water loss for these larger clusters is predominantly due to ion solvation that can be accounted for by using a model with bulk properties. In contrast, results for Ca(H 2 O) n 2 + indicate that an ion–electron pair is formed when clusters with more than ≈20 water molecules are reduced. For clusters with n = ≈20–47, these results suggest that the electron is located near the surface, but a structural transition to a more highly solvated electron is indicated for n = 47–62 by the constant recombination energy. These results suggest that an estimate of the adiabatic electron affinity of water could be obtained from measurements of even larger clusters in which an electron is fully solvated.

Circular dichroism (CD) experiments on DNA single strands (dA(n)) at the ASTRID synchrotron radiation facility reveal that eight adenine (A) bases electronically couple upon 190 nm excitation. After n=8, the CD signal increases linearly with n with a slope equal to the sum of the coupling terms. Nearest neighbor interactions account for only 24% of the CD signal whereas electronic communication is limited to nearest neighbors for two other exciton bands observed at 218 and 251 nm (i.e., dimer excited states). Electronic coupling between bases in DNA is important for nonradiative deexcitation of electronically excited states since the hazardous energy is spread over a larger spatial region.

Complexes of doubly protonated 1,n-diaminoalkanes with one or two molecules of 18-crown-6-ether undergo consecutive and competitive dissociations upon electron capture from a free thermal electron and femtosecond collisional electron transfer from Na and Cs atoms. The electron capture dissociation (ECD) and electron capture-induced dissociation (ECID) mass spectra show very different products and product ion intensities. In ECD, the reduced precursor ions dissociate primarily by loss of an ammonium hydrogen and the crown ether ligand. In ECID, ions from many more dissociation channels are observed and depend on whether collisions occur with Na or Cs atoms. ECID induces highly endothermic C C bond cleavages along the diaminoalkane chain, which are not observed with ECD. Adduction of one or two crown ethers to diaminoalkanes results in different electron capture cross-sections that follow different trends for ECD and ECID. Electron structure calculations at the B3-PMP2/6-311++G(2d,p) level of theory were used to determine structures of ions and ion radicals and the energetics for protonation, electron transfer, and ion dissociations for most species studied experimentally. The calculations revealed that the crown ether ligand substantially affected the recombination energy of the diaminoalkane ion and the electronic states accessed by electron attachment.

A new method for time-resolved daughter ion mass spectrometry is presented, based on the electrostatic ion storage ring in Aarhus, ELISA. Ions with high internal energy, e.g., as a result of photoexcitation, dissociate and the yield of neutrals is monitored as a function of time. This gives information on lifetimes in the microsecond to millisecond time range but no information on the fragment masses. To determine the dissociation channels, we have introduced pulsed supplies with switching times of a few microseconds. This allows rapid switching from storage of parent ions to storage of daughter ions, which are dumped into a detector after a number of revolutions in the ring. A fragment mass spectrum is obtained by monitoring the daughter ion signal as a function of the ring voltages. This technique allows identification of the dissociation channels and determination of the time dependent competition between these channels.

The fragmentation of doubly protonated AK dipeptide ions has been investigated after collisional electron transfer. Electron capture leads to three dominant channels, H loss, NH3 loss, and N–C? bond breakage to give either c+ or z+ fragment ions. The relative importance of these channels has been explored as a function of ion velocity, the degree of complexation with crown ether, and collision gas. Our results indicate that H loss and NH3 loss are competing channels whereas the probability of N–C? bond breakage is more or less constant.

15N-labeling of di- and tripeptides reveals that electron capture to doubly protonated peptides results almost exclusively in ammonia loss from the N-terminal end, which clearly shows that a significant fraction of electron capture occurs at this end. In accordance with this finding, the competing channel of N-Calpha bond breakage leads to z+* ions and neutral c fragments after electron capture to small dications. In larger peptides that live long enough for internal proton exchanges to occur, c+ ions are also formed and in some cases in dominant yield. Attachment of one or two crown ethers to ammonium groups is likely to reduce the probability of proton transfer, which enhances the formation of z+* relative to c+. The total yield of z+* and c+ is, however, more or less unchanged, which indicates that proton transfer or hydrogen transfer from a NH3 group to the amide group is not required for the N-Calpha bond breakage.

We have developed an experimental technique that allows us to study the physics of short lived molecular dianions in the gas phase. It is based on the formation of monoanions via electrospray ionization, acceleration of these ions to keV energies, and subsequent electron capture in a sodium vapor cell. The dianions are stored in an electrostatic ion storage ring in which they circulate with revolution times on the order of 100 micros. This enables lifetime studies in a time regime covering five orders of magnitude, 10(-5)-1 s. We have produced dianions of 7,7,8,8-tetracyano-p-quinodimethane and 2,3,5,6-tetrafluoro-7,7,8,8-tetracyano-p-quinodimethane (TCNQ-F(4)) and measured their lifetimes with respect to electron autodetachment. Our data indicate that most of the dianions were initially formed in electronically excited states in the electron transfer process. Two levels of excitation were identified by spectroscopy on the dianion of TCNQ-F(4), and the absorption spectrum was compared with spectra obtained from spectroelectrochemistry of TCNQ-F(4) in acetonitrile solution.

International audience

Absorption and synchrotron radiation circular dichroism (SRCD) spectra of nucleosides and locked nucleosides containing either the adenine and thymine nucleobase were measured in the ultraviolet and vacuum ultraviolet (down to 176 nm) regions. The CD spectra strongly depend on the chemical structure of the sugar and the introduction of a methylene bridge that locks it into a specific conformation. Spectra of compounds with different configurations at the sugar atoms shed light on what determines the sign and intensity of the CD bands.

In this paper, we explore the potential growth effects of foreign aid when in conjunction with severe debt problems. We first argue that aid, when used to finance debt repayments, does not lead to Dutch Disease while still alleviating an economic problem. A set of empirical estimates show that while inflows of foreign aid in general are not associated with growth in a sample of 38 Least Developed Countries, an interaction term with the level of external debt is significant. We take this as suggestive evidence of an alleviating effect of aid in these countries and offer some tentative thoughts on the implications for future aid policies.

Electron capture by both bare and microsolvated small peptide dications was investigated by colliding these ions with sodium vapor in an accelerator mass spectrometer to provide insight into processes that occur on the microsecond time frame. Survival of the intact peptide monocation after electron capture depends strongly on molecular size. For dipeptides, no intact reduced species were observed; the predominant ions correspond to loss of hydrogen and ammonia. In contrast, the intact reduced species was observed for larger peptides. Calculated structures indicate that the diprotonated dipeptide ions form largely extended structures with low probability of internal ionic hydrogen bonding (i.e., charge solvation) whereas internal ionic H-bonding occurs extensively for larger peptide dications. Solvation of the peptide ions with between one to seven methanol molecules reduces the total extent of H loss even for dipeptides where intact reduced species can survive more than a microsecond after electron capture. The yield of ions corresponding to cleavage of NOC bonds (c and z · ions) does not depend strongly on peptide size but decreases with the extent of microsolvation for the dipeptide dications. H-bonding appears to play an important role for the survival of the intact reduced ions but less so for the formation of c and z · ions. Our results indicate that electron capture predominantly occurs at the ammonium groups (at least 70 to 80%), and provides important new insights into the electron capture dissociation process. (J Am Soc Mass Spectrom 2006, 17, 1675–1680) © 2006 American Society for Mass Spectrometry

We have investigated collisions between Xe20+ ions and the isolated polycyclic aromatic hydrocarbon (PAH) C16H10 isomers pyrene and fluoranthene or pure clusters of either pyrene or fluoranthene. We show fragment distributions and intensities for both cases and rationalize the results by means of a classical over-the-barrier (COB) model in conjunction with quantum chemistry calculations of vertical ionization energies of pyrene and fluoranthene monomers. We find that comparatively small differences in the first and second ionization energies for these isomers have significant effects on both the monomer and cluster fragment distributions.

We have studied multiply ionization for a range of Polycyclic Aromatic Hydrocarbons (PAHs) and their charge dependent stabilities with respect to H−, H+-, C2H2- and C2H2+-emissions by means of Density Functional Theory. The adiabatic dissociation energies reveal information about the competition between these channels as functions of PAH charge state and provide predictions of the thermodynamical stability limits, while the sequences of ionization energies may e.g. be used to extract absolute ionization cross sections of astrophysical relevance.

In this proceedings I will describe the design of a new storage device currently under construction at Stockholm University, Sweden. This device uses purely electrostatic focussing and deflection elements and allows ion beams of opposite charge to be confined under extreme high vacuum and cryogenic conditions in separate "rings" and then merged over a common straight section. This Double ElectroStatic Ion Ring ExpEriment (DESIREE) apparatus allows for studies of interactions between cations and anions at low and well-defined centre-of-mass energies. I discuss the design of the DESIREE facility, highlighting some of the technical advantages of using purely electrostatic over magnetic elements, as well as the issues that have arisen during its development and construction. Finally, the advantages of this design are a boon to fundamental experimental studies and I finish by discussing an example of such potential research.

The Doppler-shift attenuation method was used to measure lifetimes of yrast states in $^{166}\mathrm{Yb}$. Values of $\ensuremath{\tau}$ range from 0.16(2) ps at ${24}^{+}$. to 0.05(1) ps at ${34}^{+}$. The $B(E2)$ values decrease from 240 to 120 single-particle units in this spin range, indicating a loss of collectivity which likely reflects a change of the nucleus towards triaxial shape. The side-feeding times are consistent with rotational cascades having moments of inertia 25% larger than the yrast sequence or $B(E2)$ values around 60 single-particle units.