40 results on '"Antonio Llinas"'
Search Results
2. Membrane Permeability in Cyclic Peptides is Modulated by Core Conformations
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Leonardo De Maria, Ekaterina L. Ratkova, Flaviu Cipcigan, Paul Smith, Jason Crain, Anders Hogner, and Antonio Llinas
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chemistry.chemical_classification ,Cell Membrane Permeability ,Membrane permeability ,Chemistry ,General Chemical Engineering ,Molecular Conformation ,General Chemistry ,Library and Information Sciences ,Peptides, Cyclic ,Small molecule ,Permeability ,Cyclic peptide ,Computer Science Applications ,Permeability (electromagnetism) ,Biophysics ,Peptides - Abstract
Cyclic peptides have the potential to bind to challenging targets, which are undruggable with small molecules, but their application is limited by low membrane permeability. Here, using a series of cyclic pentapeptides, we showed that established physicochemical criteria of permeable peptides are heavily violated. We revealed that a dominant core conformation, stabilized by amides' shielding pattern, could guide the design of novel compounds. As a result, counter-intuitive strategies, such as incorporation of polar residues, can be beneficial for permeability. We further find that core globularity is a promising descriptor, which can extend the capability of standard predictive models.
- Published
- 2020
3. Strategies of solubility enhancement and perspectives in solubility measurements of pharmaceutical compounds
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Christel A. S. Bergström and Antonio Llinas
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lcsh:Therapeutics. Pharmacology ,Chemistry (miscellaneous) ,Chemistry ,lcsh:RM1-950 ,Biochemistry and Molecular Biology ,Medicine (miscellaneous) ,Organic chemistry ,Pharmacology (medical) ,General Pharmacology, Toxicology and Pharmaceutics ,Solubility ,Biokemi och molekylärbiologi - Abstract
Strategies of solubility enhancement and perspectives in solubility measurements of pharmaceutical compounds
- Published
- 2020
4. Findings of the Second Challenge to Predict Aqueous Solubility
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Ioana Oprisiu, Antonio Llinas, and Alex Avdeef
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Computer science ,General Chemical Engineering ,media_common.quotation_subject ,Library and Information Sciences ,Machine learning ,computer.software_genre ,01 natural sciences ,Competition (economics) ,Set (abstract data type) ,0103 physical sciences ,Humans ,Quality (business) ,media_common ,010304 chemical physics ,business.industry ,Cheminformatics ,Reproducibility of Results ,Water ,General Chemistry ,Outcome (probability) ,0104 chemical sciences ,Computer Science Applications ,Test (assessment) ,010404 medicinal & biomolecular chemistry ,Pharmaceutical Preparations ,Solubility ,Data quality ,Test set ,Artificial intelligence ,business ,computer - Abstract
Ten years ago, we issued an open prediction challenge to the cheminformatics community: would participants be able to predict the equilibrium intrinsic solubilities of 32 druglike molecules using only a high-precision (CheqSol instrument, performed in one laboratory) set of 100 compounds as a training set? The "solubility challenge" was a widely recognized success and spurred many discussions about the prediction methods and quality of data. We revisited the competition a second time recently and challenged the community to a different challenge, not a blind test this time but using a larger test set of molecules, gathered and curated from published sources (mostly "gold standard" saturation shake-flask measurements), where the average interlaboratory reproducibility for the molecules was estimated to be ∼0.17 log unit. Also, a second test set was included, comprising "contentious" molecules, the reported (mostly shake-flask) solubility of which had higher average uncertainty, ∼0.62 log unit. In the second competition, the participants were invited to use their own training sets, provided that the training sets did not contain any of the test set molecules. We were motivated to revisit the competition to (1) examine to what extent computational methods had improved in 10 years, (2) verify that data quality may not be the main limiting factor in the accuracy of the prediction method, and (3) attempt to seek a relationship between the makeup of the training set data and the prediction outcome.
- Published
- 2020
5. Identification and Optimization of Pyrrolidine Derivatives as Highly Potent Ghrelin Receptor Full Agonists
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Ulf Sivars, Richard J. Lewis, Moya Caffrey, Leif Hultin, Antonio Llinas, Karin Gedda, Peter Hansen, Asim K. Ray, Ulf Andersson, Sara Lundqvist, Hiroki Wada, Lisa Jinton, Tina Jellesmark Jensen, Igor L. Shamovsky, Cristina Gardelli, Stina Sjödin, Nina Krutrök, Cooper Martin, and Paul S. Jansson
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Pyrrolidines ,media_common.quotation_subject ,Pharmacology ,Peptide hormone ,01 natural sciences ,Cachexia ,03 medical and health sciences ,Dogs ,Drug Discovery ,medicine ,Animals ,Humans ,Receptors, Ghrelin ,Receptor ,030304 developmental biology ,media_common ,0303 health sciences ,Chemistry ,Appetite ,medicine.disease ,Muscle atrophy ,Growth hormone secretion ,Rats ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,HEK293 Cells ,Adipogenesis ,Drug Design ,Molecular Medicine ,Ghrelin ,medicine.symptom - Abstract
Muscle atrophy and cachexia are common comorbidities among patients suffering from cancer, chronic obstructive pulmonary disease, and several other chronic diseases. The peptide hormone ghrelin exerts pleiotropic effects including the stimulation of growth hormone secretion and subsequent increase of insulin-like growth factor-1 levels, an important mediator of muscle growth and repair. Ghrelin also acts on inflammation, appetite, and adipogenesis and therefore has been considered a promising therapeutic target for catabolic conditions. We previously reported on the synthesis and properties of an indane based series of ghrelin receptor full agonists which led to a sustained increase of insulin-like growth factor-1 in a dog pharmacodynamic study. Herein we report on the identification of a series of pyrrolidine or piperidine based full agonists and attempted optimization to give compounds with profiles suitable for progression as clinical candidates.
- Published
- 2020
6. AZD0284, a Potent, Selective, and Orally Bioavailable Inverse Agonist of Retinoic Acid Receptor-Related Orphan Receptor C2
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Roine I. Olsson, Rikard Pehrson, Rongfeng Chen, Jesper Malmberg, Anna Malmberg, Nafizal Hossain, Hanna Grindebacke, Mia Collins, Matti Lepistö, Yao Xiong, Nina Krutrök, Antonio Llinas, Thomas Hansson, Eva L. Hansson, Elisabeth Bäck, Anna Aagaard, Jane McPheat, Linda Thunberg, Sarah Lever, Agnes Leffler, Yafeng Xue, Stefan von Berg, Petter Svanberg, Frank Narjes, Marie Ramnegård, Glyn Hughes, and Johan Jirholt
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Male ,Drug Inverse Agonism ,Anti-Inflammatory Agents ,Inflammation ,Pharmacology ,Isoindoles ,chemistry.chemical_compound ,Structure-Activity Relationship ,Dogs ,In vivo ,Drug Discovery ,medicine ,Inverse agonist ,Animals ,Humans ,Sulfones ,Rats, Wistar ,Orphan receptor ,Imiquimod ,Thymocytes ,Molecular Structure ,Chemistry ,Isoindoline ,Orphan Nuclear Receptors ,Mice, Inbred C57BL ,Retinoic acid receptor ,Thymocyte ,Nuclear receptor ,Molecular Medicine ,Th17 Cells ,Female ,medicine.symptom - Abstract
Inverse agonists of the nuclear receptor RORC2 have been widely pursued as a potential treatment for a variety of autoimmune diseases. We have discovered a novel series of isoindoline-based inverse agonists of the nuclear receptor RORC2, derived from our recently disclosed RORC2 inverse agonist 2. Extensive structure-activity relationship (SAR) studies resulted in AZD0284 (20), which combined potent inhibition of IL-17A secretion from primary human TH17 cells with excellent metabolic stability and good PK in preclinical species. In two preclinical in vivo studies, compound 20 reduced thymocyte numbers in mice and showed dose-dependent reduction of IL-17A containing γδ-T cells and of IL-17A and IL-22 RNA in the imiquimod induced inflammation model. Based on these data and a favorable safety profile, 20 was progressed to phase 1 clinical studies.
- Published
- 2021
7. The Solid State Landscape of the Sildenafil Drug
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Rafel Prohens, Antonio Llinas, and Rafael Barbas
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Drug ,Active ingredient ,Polymorphism (Crystallography) ,Male ,Sildenafil ,media_common.quotation_subject ,Drug Compounding ,Solid-state ,Pharmaceutical Science ,Polimorfisme (Cristal·lografia) ,Combinatorial chemistry ,Sildenafil Citrate ,United Kingdom ,Drug compound ,chemistry.chemical_compound ,chemistry ,Cristal·lització ,Humans ,Salts ,Pharmaceutical sciences ,Prescribed drugs ,Crystallization ,media_common - Abstract
Sildenafil, the active ingredient of the drug developed by Pfizer for the treatment of erectile dysfunction was firstly synthesized in 1989 in the United Kingdom and since then it has become one of the most prescribed drugs for sexual performance in the western world with more than 2.7 million prescriptions in the US in 2021. Since its discovery, this drug compound has attracted the interest of formulators and crystallographers, with a high number of crystal forms of sildenafil being found and characterized, including polymorphs, hydrates, solvates, salts and cocrystals, converting it in one of the most promiscuous multicomponent crystal former drugs in the pharmaceutical sciences arena. In this minireview, the polymorph, pseudopolymorph and multicomponent solid forms landscape of sildenafil is presented through a comprehensive compilation of their 42 solid forms reported in literature.
- Published
- 2021
8. Solubility Challenge Revisited after Ten Years, with Multilab Shake-Flask Data, Using Tight (SD ∼ 0.17 log) and Loose (SD ∼ 0.62 log) Test Sets
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Antonio Llinas and Alex Avdeef
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Shake flask ,Training set ,010304 chemical physics ,Interlaboratory reproducibility ,Computer science ,Cheminformatics ,General Chemical Engineering ,General Chemistry ,Library and Information Sciences ,History, 21st Century ,01 natural sciences ,0104 chemical sciences ,Computer Science Applications ,Test (assessment) ,Set (abstract data type) ,Data set ,010404 medicinal & biomolecular chemistry ,Solubility ,0103 physical sciences ,Statistics - Abstract
Ten years ago we issued, in conjunction with the Journal of Chemical Information and Modeling, an open prediction challenge to the cheminformatics community. Would they be able to predict the intrinsic solubilities of 32 druglike compounds using only a high-precision set of 100 compounds as a training set? The "Solubility Challenge" was a widely recognized success and spurred many discussions about the prediction methods and quality of data. Regardless of the obvious limitations of the challenge, the conclusions were somewhat unexpected. Despite contestants employing the entire spectrum of approaches available then to predict aqueous solubility and disposing of an extremely tight data set, it was not possible to identify the best methods at predicting aqueous solubility, a variety of methods and combinations all performed equally well (or badly). Several authors have suggested since then that it is not the poor quality of the solubility data which limits the accuracy of the predictions, but the deficient methods used. Now, ten years after the original Solubility Challenge, we revisit it and challenge the community to a new test with a much larger database with estimates of interlaboratory reproducibility.
- Published
- 2019
9. Multi-Solvent Models for Solvation Free Energy Predictions Using 3D-RISM Hydration Thermodynamic Descriptors
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Antonio Llinas, Vigneshwari Subramanian, Maxim V. Fedorov, Ekaterina L. Ratkova, David S. Palmer, and Ola Engkvist
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Materials science ,010304 chemical physics ,Chemistry ,General Chemical Engineering ,Organic solvent ,Entropy ,Solvation ,Thermodynamics ,Water ,General Chemistry ,Library and Information Sciences ,01 natural sciences ,0104 chemical sciences ,Computer Science Applications ,Root mean square ,Solvent ,Solutions ,010404 medicinal & biomolecular chemistry ,Solvent models ,0103 physical sciences ,Solvents ,QD ,Free energies ,Energy (signal processing) - Abstract
The potential to predict Solvation Free Energies (SFEs) in any solvent using a machine learning (ML) model based on thermodynamic output, extracted from 3D-RISM simulations in water is investigated. The models on multiple solvents take into account both the solute and solvent description and offer the possibility to predict SFEs of any solute in any solvent with root mean squared errors less than 1 kcal/mol. Validations that involve exclusion of fractions or clusters of the solutes or solvents exemplify the model’s capability to predict SFEs of novel solutes and solvents with diverse chemical profiles. In addition to being predictive, our models can identify the solute and solvent features that influence SFE predictions. Furthermore, using 3D-RISM hydration thermodynamic output to predict SFEs in any organic solvent reduces the need to run 3D-RISM simulations in all these solvents. Altogether, our multi-solvent models for SFE predictions that take advantage of the solvation effects are expected to have an impact in the property prediction space.
- Published
- 2020
10. Potent and Orally Bioavailable Inverse Agonists of RORγt Resulting from Structure-Based Design
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Hanna Grindebacke, Frank Narjes, Eva L. Hansson, Yao Xiong, Antonio Llinas, Linda Thunberg, Jesper Malmberg, Stefan Tångefjord, Roine I. Olsson, Ge Hongbin, Rongfeng Chen, Yafeng Xue, Agnes Leffler, Hanna Leek, Thomas Hansson, Elisabeth Bäck, Jane McPheat, Nafizal Hossain, Matti Lepistö, Stefan von Berg, Johan Jirholt, and Anna Aagaard
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Models, Molecular ,0301 basic medicine ,Drug Inverse Agonism ,Protein Conformation ,Stereochemistry ,Administration, Oral ,Biological Availability ,Rodentia ,Crystallography, X-Ray ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,Amide ,Acetamides ,Drug Discovery ,Animals ,Humans ,Inverse agonist ,Structure–activity relationship ,Tissue Distribution ,Binding site ,Cells, Cultured ,Orphan receptor ,Binding Sites ,Molecular Structure ,Interleukin-17 ,Nuclear Receptor Subfamily 1, Group F, Member 3 ,Retinoic acid receptor ,030104 developmental biology ,chemistry ,Drug Design ,Th17 Cells ,Molecular Medicine ,Acetamide ,Protein Binding - Abstract
Retinoic acid receptor related orphan receptor γt (RORγt), has been identified as the master regulator of TH17-cell function and development, making it an attractive target for the treatment of autoimmune diseases by a small-molecule approach. Herein, we describe our investigations on a series of 4-aryl-thienyl acetamides, which were guided by insights from X-ray cocrystal structures. Efforts in targeting the cofactor-recruitment site from the 4-aryl group on the thiophene led to a series of potent binders with nanomolar activity in a primary human-TH17-cell assay. The observation of a DMSO molecule binding in a subpocket outside the LBD inspired the introduction of an acetamide into the benzylic position of these compounds. Hereby, a hydrogen-bond interaction of the introduced acetamide oxygen with the backbone amide of Glu379 was established. This greatly enhanced the cellular activity of previously weakly cell-active compounds. The best compounds combined potent inhibition of IL-17 release with favorab...
- Published
- 2018
11. Identification and Pharmacological Profile of an Indane Based Series of Ghrelin Receptor Full Agonists
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Kostas Karabelas, Ulf Andersson, Lisa Jinton, Ulf Sivars, Leif Hultin, Joakim Larsson, Cristina Gardelli, Brith Leidvik, Karin Gedda, Marie Rydén Landergren, Igor L. Shamovsky, Hiroki Wada, Kristina Stenvall, Asim K. Ray, Moya Caffrey, Hitesh J. Sanganee, Joakim Tholander, and Antonio Llinas
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Male ,Models, Molecular ,0301 basic medicine ,medicine.medical_specialty ,Protein Conformation ,media_common.quotation_subject ,Inflammation ,Cachexia ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Drug Discovery ,medicine ,Animals ,Humans ,Receptors, Ghrelin ,Receptor ,Wasting ,media_common ,Chemistry ,digestive, oral, and skin physiology ,Appetite ,medicine.disease ,Growth hormone secretion ,Rats ,HEK293 Cells ,030104 developmental biology ,Endocrinology ,Adipogenesis ,030220 oncology & carcinogenesis ,Indans ,Molecular Medicine ,Ghrelin ,medicine.symptom ,hormones, hormone substitutes, and hormone antagonists - Abstract
Cachexia and muscle wasting are very common among patients suffering from cancer, chronic obstructive pulmonary disease, and other chronic diseases. Ghrelin stimulates growth hormone secretion via the ghrelin receptor, which subsequently leads to increase of IGF-1 plasma levels. The activation of the GH/IGF-1 axis leads to an increase of muscle mass and functional capacity. Ghrelin further acts on inflammation, appetite, and adipogenesis and for this reason was considered an important target to address catabolic conditions. We report the synthesis and properties of an indane based series of ghrelin receptor full agonists; they have been shown to generate a sustained increase of IGF-1 levels in dog and have been thoroughly investigated with respect to their functional activity.
- Published
- 2018
12. Property prediction and pharmacokinetic evaluation of mixed stoichiometry cocrystals of zafirlukast, a drug delivery case study
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Hongyu Zhou, David J. Berry, Hongwen Du, James F. McCabe, Antonio Llinas, Rafel Prohens, Philip Anthony Corner, and Rafael Barbas
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Drug ,Chemistry ,media_common.quotation_subject ,Context (language use) ,02 engineering and technology ,General Chemistry ,Computational biology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Dosage form ,0104 chemical sciences ,Pharmacokinetics ,Physical form ,Drug delivery ,medicine ,General Materials Science ,Zafirlukast ,0210 nano-technology ,media_common ,medicine.drug - Abstract
Cocrystals have been identified as a method for ensuring the delivery of poorly soluble drugs. Development of cocrystal phases presents many challenges, with the in vivo drug delivery benefits difficult to predict robustly. Additional to this, many of the benefits seen in the literature do not use formulation strategies which are representative of the clinical dosage form. Zafirlukast has been shown to possess poor development properties. It is poorly soluble and difficult to manufacture. Here we present a case study highlighting the benefits of cocrystals in this context, outlining the discovery, formulation and improved pharmacokinetics of mixed stoichiometry cocrystals of zafirlukast. This case study outlines methods, which could be broadly applied to other drug molecules, for determination of the properties of cocrystals through a suite of in vitro experiments that display a predictive pathway from physical form discovery to enhanced in vivo activity in animal models.
- Published
- 2018
13. Discovery of Potent and Orally Bioavailable Inverse Agonists of the Retinoic Acid Receptor-Related Orphan Receptor C2
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Stefan von Berg, Yafeng Xue, Mia Collins, Antonio Llinas, Roine I. Olsson, Torbjörn Halvarsson, Maria Lindskog, Jesper Malmberg, Johan Jirholt, Nina Krutrök, Marie Ramnegård, Marie Brännström, Anders Lundqvist, Matti Lepistö, Anna Aagaard, Jane McPheat, Eva L. Hansson, Rongfeng Chen, Yao Xiong, Thomas G. Hansson, and Frank Narjes
- Subjects
Organic Chemistry ,Drug Discovery ,Biochemistry - Abstract
[Image: see text] The further optimization of a recently disclosed series of inverse agonists of the nuclear receptor RORC2 is described. Investigations into the left-hand side of compound 1, guided by X-ray crystal structures, led to the substitution of the 4-aryl-thiophenyl residue with the hexafluoro-2-phenyl-propan-2-ol moiety. This change resulted in to compound 28, which combined improved drug-like properties with good cell potency and a significantly lower dose, using an early dose to man prediction. Target engagement in vivo was demonstrated in the thymus of mice by a reduction in the number of double positive T cells after oral dosing.
- Published
- 2019
14. Derisking Development by a Cocrystallization Screen of a Novel Selective Inhaled JAK-STAT inhibitor
- Author
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Rafael Barbas, Amir Smailagic, Mercè Font-Bardia, Rafel Prohens, and Antonio Llinas
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Crystallography ,010405 organic chemistry ,Chemistry ,Cristal·lografia ,Sals ,JAK-STAT signaling pathway ,General Chemistry ,010402 general chemistry ,Condensed Matter Physics ,01 natural sciences ,0104 chemical sciences ,Cancer research ,General Materials Science ,Salts - Abstract
The discovery and detailed characterization of several new solid forms of a novel selective inhaled JAK-STAT inhibitor are described. Using a holistic cocrystallization screen approach to explore its formulation landscape, we decrease the risk of future potential development failures due to a nonoptimal pharmacokinetic lung profile or undesired lung effects in humans.
- Published
- 2019
15. Equilibrium solubility measurement of ionizable drugs - consensus recommendations for improving data quality
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Antonio Llinas, Clara Ràfols, Krisztina Takács-Novák, Alex Avdeef, Elisabet Fuguet, Gergely Völgyi, Elena Boldyreva, Elisabeth Bosch, Tatjana Ž. Verbić, and Universitat de Barcelona
- Subjects
buffer solubility ,micelles ,Sals ,Medicine (miscellaneous) ,Bjerrum curve ,02 engineering and technology ,shake-flask solubility ,intrinsic solubility ,water solubility ,thermodynamic solubility ,CheqSol ,Potentiometric Cycling for Polymorph Creation ,Henderson-Hasselbalch equation ,aggregates ,oligomers ,hydrates ,salts ,polymorphs ,cocrystals ,030226 pharmacology & pharmacy ,Micelle ,Henderson–Hasselbalch equation ,03 medical and health sciences ,0302 clinical medicine ,Organic chemistry ,Pharmacology (medical) ,General Pharmacology, Toxicology and Pharmaceutics ,Solubility ,Aqueous solution ,Chemistry ,lcsh:RM1-950 ,Solubility equilibrium ,021001 nanoscience & nanotechnology ,Molar solubility ,Hildebrand solubility parameter ,lcsh:Therapeutics. Pharmacology ,Chemical engineering ,Chemistry (miscellaneous) ,Ionic strength ,Salts ,Solubilitat ,Henderson-Hasselbalc ,0210 nano-technology - Abstract
This commentary addresses data quality in equilibrium solubility measurement in aqueous solution. Broadly discussed is the “gold standard” shake-flask (SF) method used to measure equilibrium solubility of ionizable drug-like molecules as a function of pH. Many factors affecting the quality of the measurement are recognized. Case studies illustrating the analysis of both solution and solid state aspects of solubility measurement are presented. Coverage includes drug aggregation in solution (sub-micellar, micellar, complexation), use of mass spectrometry to assess aggregation in saturated solutions, solid state characterization (salts, polymorphs, cocrystals, polymorph creation by potentiometric method), solubility type (water, buffer, intrinsic), temperature, ionic strength, pH measurement, buffer issues, critical knowledge of the pKa, equilibration time (stirring and sedimentation), separating solid from saturated solution, solution handling and adsorption to untreated surfaces, solubility units, and tabulation/graphic presentation of reported data. The goal is to present cohesive recommendations that could lead to better assay design, to result in improved quality of measurements, and to impart a deeper understanding of the underlying solution chemistry in suspensions of drug solids.
- Published
- 2016
16. Beyond Size, Ionization State, and Lipophilicity: Influence of Molecular Topology on Absorption, Distribution, Metabolism, Excretion, and Toxicity for Druglike Compounds
- Author
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Antonio Llinas, Ola Engkvist, Hongming Chen, and Yidong Yang
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Absorption (pharmacology) ,Cell Membrane Permeability ,Drug-Related Side Effects and Adverse Reactions ,Stereochemistry ,Plasma protein binding ,Computational chemistry ,Ionization ,Drug Discovery ,Cytochrome P-450 CYP3A ,Humans ,biology ,CYP3A4 ,Chemistry ,Cytochrome P450 ,Blood Proteins ,Metabolism ,Lipid Metabolism ,Ether-A-Go-Go Potassium Channels ,Potassium channel ,Pharmaceutical Preparations ,Solubility ,Lipophilicity ,biology.protein ,Cytochrome P-450 CYP3A Inhibitors ,Molecular Medicine ,Caco-2 Cells ,Protein Binding - Abstract
The absorption, distribution, metabolism, excretion, and toxicity (ADMET) of a compound is dependent on physicochemical properties such as molecular size, lipophilicity, and ionization state. However, much less is known regarding the relationship between ADMET and the molecular topology. In this study two descriptors related to the molecular topology have been investigated, the fraction of the molecular framework (f(MF)) and the fraction of sp(3)-hybridized carbon atoms (Fsp(3)). f(MF) and Fsp(3), together with standard physicochemical properties (molecular size, ionization state, and lipophilicity), were analyzed for a set of ADMET assays. It is shown that aqueous solubility, Caco-2 permeability, plasma protein binding, human ether-a-go-go-related potassium channel protein inhibition, and CYP3A4 (CYP = cytochrome P450) inhibition are influenced by the molecular topology. These findings are in most cases independent of the already well-established relationships between the properties and molecular size, lipophilicity, and ionization state.
- Published
- 2012
17. Discovery of N-(1-adamantyl)-2-(4-alkylpiperazin-1-yl)acetamide derivatives as T-type calcium channel (Cav3.2) inhibitors
- Author
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Antonio Llinas, Fredrik Thorstensson, Emma Lindhardt, Ågot Högberg, Kristina Nilsson, Anders Lindqvist, Annika Åstrand, Göran Duker, Victoria Ullah, Gavin O'Mahony, Qing-Dong Wang, Pernilla Ståhlberg, Nidhal Selmi, Laurent Knerr, and Fabrizio Giordanetto
- Subjects
Stereochemistry ,Clinical Biochemistry ,Pharmaceutical Science ,Biochemistry ,Calcium Channels, T-Type ,Structure-Activity Relationship ,chemistry.chemical_compound ,In vivo ,Acetamides ,Drug Discovery ,Animals ,Humans ,Molecular Biology ,Antihypertensive Agents ,Dose-Response Relationship, Drug ,Molecular Structure ,Chemistry ,Calcium channel ,Organic Chemistry ,T-type calcium channel ,Stereoisomerism ,Calcium Channel Inhibition ,Ether-A-Go-Go Potassium Channels ,High-Throughput Screening Assays ,Rats ,Chemical evolution ,Molecular Medicine ,Acetamide - Abstract
Chemical evolution of a HTS-based fragment hit resulted in the identification of N -(1-adamantyl)-2-[4-(2-tetrahydropyran-4-ylethyl)piperazin-1-yl]acetamide, a novel, selective T-type calcium channel (Ca v 3.2) inhibitor with in vivo antihypertensive effect in rats.
- Published
- 2011
18. Findings of the Challenge To Predict Aqueous Solubility
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Antonio Llinas, Emilio Xavier Esposito, Jonathan M. Goodman, Robert C. Glen, and Anton J. Hopfinger
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Chemistry ,General Chemical Engineering ,Aqueous solubility ,Organic chemistry ,General Chemistry ,Library and Information Sciences ,Solubility ,Computer Science Applications - Published
- 2008
19. Solubility Challenge: Can You Predict Solubilities of 32 Molecules Using a Database of 100 Reliable Measurements?
- Author
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Robert C. Glen, Jonathan M. Goodman, and Antonio Llinas
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Systematic error ,Aqueous solution ,Chromatography ,Chemistry ,Thermodynamic equilibrium ,General Chemical Engineering ,Osmolar Concentration ,Potentiometric titration ,Temperature ,Reproducibility of Results ,Thermodynamics ,General Chemistry ,Library and Information Sciences ,Computer Science Applications ,Pharmaceutical Preparations ,Solubility ,Ionic strength ,Database Management Systems ,Molecule - Abstract
Solubility is a key physicochemical property of molecules. Serious deficiencies exist in the consistency and reliability of solubility data in the literature. The accurate prediction of solubility would be very useful. However, systematic errors and lack of metadata associated with measurements greatly reduce the confidence in current models. To address this, we are accurately measuring intrinsic solubility values, and here we report results for a diverse set of 100 druglike molecules at 25 degrees C and an ionic strength of 0.15 M using the CheqSol approach. This is a highly reproducible potentiometric technique that ensures the thermodynamic equilibrium is reached rapidly. Results with a coefficient of variation higher than 4% were rejected. In addition, the Potentiometric Cycling for Polymorph Creation method, [PC] (2), was used to obtain multiple polymorph forms from aqueous solution. We now challenge researchers to predict the intrinsic solubility of 32 other druglike molecules that have been measured but are yet to be published.
- Published
- 2008
20. Polymorph control: past, present and future
- Author
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Antonio Llinas and Jonathan M. Goodman
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Pharmacology ,History ,Molecular Structure ,Mineralogy ,Epistemology ,Pharmaceutical Preparations ,X-Ray Diffraction ,Pharmaceutical technology ,Drug Discovery ,Solvents ,Humans ,Technology, Pharmaceutical ,Thermodynamics ,Crystallization ,Control (linguistics) - Abstract
The appearance and disappearance of polymorphs is no longer a mysterious and inexplicable process. Although methods for polymorph control are still imperfect, there is a large armoury of methods that can be used to tackle this important and challenging problem. We survey the methods and their successes over the last few years.
- Published
- 2008
21. Concomitant Hydrate Polymorphism in the Precipitation of Sparfloxacin from Aqueous Solution
- Author
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Jonathan C. Burley, Jonathan M. Goodman, Robert C. Glen, Timothy J. Prior, and Antonio Llinas
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Aqueous solution ,Chemistry ,Precipitation (chemistry) ,Potentiometric titration ,Inorganic chemistry ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,Sparfloxacin ,Fluoroquinolone Antibiotic ,Polymorphism (materials science) ,medicine ,General Materials Science ,Hydrate ,medicine.drug - Abstract
The Potentiometric Cycling for Polymorph Creation [PC]2 has been applied to sparfloxacin, a third-generation fluoroquinolone antibiotic. Two different trihydrate phases precipitate from aqueous solution. X-ray data indicate that one of these is a previously unknown polymorph of sparfloxacin trihydrate. Because both forms crystallize from solution at the same time, the two crystalline forms are concomitant polymorphs that precipitate in a thermodynamically controlled ratio.
- Published
- 2008
22. Diclofenac Solubility: Independent Determination of the Intrinsic Solubility of Three Crystal Forms
- Author
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Jonathan C. Burley, Karl J Box, Antonio Llinas, Jonathan M. Goodman, and Robert C. Glen
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Diclofenac ,Sodium ,chemistry.chemical_element ,Crystal structure ,Crystal ,Differential scanning calorimetry ,X-Ray Diffraction ,Drug Discovery ,medicine ,Organic chemistry ,Solubility ,Calorimetry, Differential Scanning ,Chemistry ,Anti-Inflammatory Agents, Non-Steroidal ,Water ,Kinetics ,stomatognathic diseases ,Thermogravimetry ,Solvents ,Anhydrous ,Molecular Medicine ,Hydrate ,Nuclear chemistry ,medicine.drug - Abstract
The solubility in water of diclofenac ({2-[(2,6-dichlorophenyl)amino]phenyl}acetic acid), a potent nonsteroidal anti-inflammatory drug, has been investigated. The various solid forms have been characterized by thermogravimetric analysis, differential scanning calorimetry, and X-ray diffraction. The commercially available form of diclofenac is the anhydrous sodium salt. This was recrystallized from ethanol and precipitated as a hydrate containing four diclofenac anions, four sodium cations, and nineteen water molecules per unit cell. This crystal structure is similar to but different from an earlier report of the structure. Crystals of the acid form of diclofenac were anhydrous and corresponded to an earlier crystal structure. Separate solubility measurements on all three of these solid forms of diclofenac gave consistent results for the intrinsic solubility. The aqueous solubility values reported in the literature for diclofenac are spread over a large range, with a factor of 100 separating the largest and the smallest. Our value is at the smaller end of this range. It is the only one supported by three independent procedures and rigorous characterization of the solid forms. The experimental conditions were precisely controlled.
- Published
- 2007
23. Fast and general method to predict the physicochemical properties of druglike molecules using the integral equation theory of molecular liquids
- Author
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Maksim Misin, Antonio Llinas, Maxim V. Fedorov, and David S. Palmer
- Subjects
Quantitative structure–activity relationship ,General method ,Chemical Phenomena ,Chemistry, Pharmaceutical ,Pharmaceutical Science ,010402 general chemistry ,01 natural sciences ,Computational chemistry ,0103 physical sciences ,Drug Discovery ,Humans ,Molecule ,Desolvation ,QD ,Statistical physics ,010304 chemical physics ,Chemistry ,Solvation ,Water ,Statistical mechanics ,Models, Theoretical ,Integral equation ,0104 chemical sciences ,Pharmaceutical Preparations ,Solvents ,Thermodynamics ,Molecular Medicine ,Caco-2 Cells ,Benchmark data - Abstract
We report a method to predict physico-chemical properties of druglike molecules using a classical statistical mechanics based solvent model combined with machine learning. The RISM-MOL-INF method introduced here provides an accurate technique to characterize solvation and desolvation processes based on solute-solvent correlation functions computed by the 1D Reference Interaction Site Model of the Integral Equation Theory of Molecular Liquids. These functions can be obtained in a matter of minutes for most small organic and druglike molecules using existing software (RISM-MOL) (Sergiievskyi, V. P.; Hackbusch, W.; Fedorov, M. V. J. Comput. Chem. 2011, 32, 1982-1992.). Predictions of caco-2 cell permeability and hydration free energy obtained using the RISM-MOL-INF method are shown to be more accurate than the state-of-the-art tools for benchmark datasets. Due to the importance of solvation and desolvation effects in biological systems, it is anticipated that the RISM-MOL-INF approach will find many applications in biophysical and biomedical property prediction.
- Published
- 2015
24. Two New Polymorphic Cocrystals of Zafirlukast: Preparation, Crystal Structure, and Stability Relations
- Author
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Antonio Llinas, Rafael Barbas, Mercè Font-Bardia, Rafel Prohens, Sitaram P. Velaga, and Michael J. Quayle
- Subjects
Solid-state ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,Cocrystal ,Química supramolecular ,chemistry.chemical_compound ,Crystallography ,Piperazine ,chemistry ,medicine ,Anhydrous ,General Materials Science ,Zafirlukast ,Acetonitrile ,Supramolecular chemistry ,Single crystal ,Estructura cristal·lina (Sòlids) ,Layer structure (Solids) ,medicine.drug - Abstract
Two new cocrystals of zafirlukast with piperazine, existing in five different solid forms, have been discovered during a cocrystal screening. The crystal structure of one of these forms has been determined by single crystal X-ray diffraction, and the stability landscape of the crystalline forms of the new cocrystal has been studied. In the present article, we extend the knowledge about the solid state of this important pharmaceutical drug for the treatment of asthma by reporting the crystal structures of two new solvates (acetonitrile and butanol) and the elusive anhydrous Form X, which have been solved by single crystal X-ray diffraction.
- Published
- 2015
25. Amodiaquinium dichloride dihydrate from laboratory powder diffraction data
- Author
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Antonio Llinas, Jonathan M. Goodman, László Fábián, Jacco van de Streek, and Jonathan C. Burley
- Subjects
Crystallography ,Rietveld refinement ,Chemistry ,Hydrogen bond ,Resolution (electron density) ,Mineralogy ,General Materials Science ,General Chemistry ,Crystal structure ,Condensed Matter Physics ,Powder diffraction ,Dication ,Ion - Abstract
The title compound (systematic name: {5-[(7-chloroquinolinium-4-yl)amino]-2-hydroxybenzyl}dimethylammonium dichloride dihydrate), C20H24ClN3O2+·2Cl−·2H2O, has one amodiaquinium dication, two Cl− anions and two water molecules in the asymmetric unit. The crystal structure was solved by simulated annealing from laboratory X-ray powder diffraction data, with data collected at room temperature. Rietveld refinement of this model led to a final Rwp of 0.047 to 1.79 A resolution. A three-dimensional network of hydrogen bonding links the amodiaquinium cations via water molecules and Cl− ions.
- Published
- 2006
26. Discovery of AZD6642, an inhibitor of 5-lipoxygenase activating protein (FLAP) for the treatment of inflammatory diseases
- Author
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Susanne Winiwarter, Öjvind Davidsson, Alleyn T. Plowright, Anna Pettersen, Carl Whatling, Marie Rydén-Landergren, Johan Broddefalk, Margareta Herslöf, Jonas Gunnar Barlind, Daniel Hovdal, Kalle Sigfridsson, Tomas Drmota, Marianne Swanson, Hans Emtenäs, Antonio Llinas, Sara Moses, Johan Ulander, Anders Dahlén, and Malin Lemurell
- Subjects
Stereochemistry ,Leukotriene B4 ,Anti-Inflammatory Agents ,Pharmacology ,chemistry.chemical_compound ,Structure-Activity Relationship ,Dogs ,X-Ray Diffraction ,Drug Discovery ,Structure–activity relationship ,Animals ,Humans ,5-lipoxygenase-activating protein ,Picolinic Acids ,biology ,Chemistry ,Drug discovery ,Stereoisomerism ,Ligand (biochemistry) ,Rats ,Solubility ,Lipophilic efficiency ,5-Lipoxygenase-Activating Protein Inhibitors ,Pyrazines ,Lipophilicity ,biology.protein ,Molecular Medicine ,Ex vivo - Abstract
A drug discovery program in search of novel 5-lipoxygenase activating protein (FLAP) inhibitors focused on driving a reduction in lipophilicity with maintained or increased ligand lipophilic efficiency (LLE) compared to previously reported compounds led to the discovery of AZD6642 (15b). Introduction of a hydrophilic tetrahydrofuran (THF) ring at the stereogenic central carbon atom led to a significant shift in physicochemical property space. The structure-activity relationship exploration and optimization of DMPK properties leading to this compound are described in addition to pharmacokinetic analysis and an investigation of the pharmacokinetic (PK)-pharmacodynamic (PD) relationship based on ex vivo leukotriene B4 (LTB4) levels in dog. AZD6642 shows high specific potency and low lipophilicity, resulting in a selective and metabolically stable profile. On the basis of initial PK/PD relation measured, a low dose to human was predicted.
- Published
- 2014
27. Inactivation of Bacterial <scp>dd</scp>-Peptidase by β-Sultams
- Author
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Michael Delmarcelle, Andrew P. Laws, Judith A. Kelly, Naveed Ahmed, Jean Marie Frère, Nicholas R. Silvaggi, Massimiliano Cordaro, Antonio Llinas, and Michael I. Page
- Subjects
Spectrometry, Mass, Electrospray Ionization ,Stereochemistry ,Hydroxylamine ,Crystallography, X-Ray ,Biochemistry ,Catalysis ,Substrate Specificity ,Serine ,Enzyme Reactivators ,Bacterial Proteins ,Enzyme Stability ,Hydrolase ,Sulfhydryl Compounds ,Enzyme Inhibitors ,Binding site ,Sulfonyl ,chemistry.chemical_classification ,Sulfonamides ,Binding Sites ,biology ,Chemistry ,Hydrolysis ,Substrate (chemistry) ,Active site ,Esters ,Hydrogen-Ion Concentration ,Serine-Type D-Ala-D-Ala Carboxypeptidase ,Streptomyces ,Anti-Bacterial Agents ,Enzyme ,biology.protein ,PENICILLIN-BINDING-PROTEINS ,ENTEROBACTER-CLOACAE P99 ,TRANSITION-STATE ANALOG ,ALANYL-D-ALANINE ,PHOSPHONATE MONOESTER INHIBITORS ,LACTAMASE INHIBITORS ,ALPHA-CHYMOTRYPSIN ,SULFONYL FLUORIDES ,STREPTOMYCES R61 ,BORONIC ACIDS ,Oxyanion hole - Abstract
N-Acyl-beta-sultams are time-dependent, irreversible active site-directed inhibitors of Streptomyces R61 DD-peptidase. The rate of inactivation is first order with respect to beta-sultam concentration, and the second-order rate constants show a dependence on pH similar to that for the hydrolysis of a substrate. Inactivation is due to the formation of a stable 1:1 enzyme-inhibitor complex as a result of the active site serine being sulfonylated by the beta-sultam as shown by ESI-MS analysis and by X-ray crystallography. A striking feature of the sulfonyl enzyme is that the inhibitor is not bound to the oxyanion hole but interacts extensively with the "roof" of the active site where the Arg 285 is located.
- Published
- 2005
28. Thiol-catalysed hydrolysis of cephalosporins and possible rate-limiting amine anion expulsion
- Author
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Michael I. Page, Antonio Llinas, and B. Vilanova
- Subjects
chemistry.chemical_classification ,Chemistry ,Organic Chemistry ,Protonation ,Thioester ,Medicinal chemistry ,chemistry.chemical_compound ,Thiolysis ,Nucleophile ,Tetrahedral carbonyl addition compound ,Lactam ,Organic chemistry ,Amine gas treating ,Reactivity (chemistry) ,Physical and Theoretical Chemistry - Abstract
The rates of thiolysis of cephalosporins were investigated by high-performance liquid chromatography and 1 H NMR spectroscopy. Thiols catalyse the hydrolysis through the formation of a thioester intermediate and the catalytically reactive form of the thiol is the thiolate anion. Variation of nucleophilic reactivity by changing the basicity of the thiolate anion generates a Bronstednuc value of 1.22 with cephaloridine, indicating that the breakdown of the tetrahedral intermediate is the rate-limiting step. The effect of C3 0 substituents on the rate of thiolysis of cephalosporins generates a large Hammettof ca 12, which is compatible with C—N bond fission occurring without protonation of the � -lactam nitrogen. Solvent kinetic isotope effects kH2O=kD2O of ca 1.1 also indicate that solvent water probably does not act as a general acid catalyst facilitating breakdown of the tetrahedral intermediate by protonating the departing amine. Copyright # 2004 John Wiley & Sons, Ltd.
- Published
- 2004
29. Intramolecular general acid catalysis in the aminolysis of β-lactam antibiotics
- Author
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Antonio Llinas and Michael I. Page
- Subjects
Stereochemistry ,Organic Chemistry ,Molecular Conformation ,Leaving group ,Penicillin G ,beta-Lactams ,Biochemistry ,Medicinal chemistry ,Catalysis ,Anti-Bacterial Agents ,chemistry.chemical_compound ,Acid catalysis ,Hydroxylamine ,Aminolysis ,chemistry ,Tetrahedral carbonyl addition compound ,Intramolecular force ,Cephaloridine ,medicine ,Lactam ,Amines ,Physical and Theoretical Chemistry ,Acids ,medicine.drug - Abstract
The rate of aminolysis of benzylpenicillin and cephaloridine by hydroxylamine, unlike other amines, shows only a first order dependence on amine concentration. The rate enhancement compared with that predicted from a Bronsted plot for other primary amines with benzylpenicillin is greater than 10(6). This is much more than an alpha-effect and is compatible with rate-limiting formation of the tetrahedral intermediate due to a rapid intramolecular general acid catalysed breakdown of the intermediate. For cephaloridine, the rate enhancement is greater than 10(4) which demonstrates that beta-lactam C-N bond fission and expulsion of the leaving group at C3' are not concerted.
- Published
- 2004
30. The role of a β-proton transfer donor in the degradation of benzylpenicillin
- Author
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Antonio Llinas, Bartolomé Vilanova, Francisco Muñoz, and Josefa Donoso
- Subjects
chemistry.chemical_classification ,Chemistry ,Concerted reaction ,Stereochemistry ,organic chemicals ,Process Chemistry and Technology ,Thioester ,Medicinal chemistry ,Catalysis ,Reaction rate constant ,Thiolysis ,Nucleophile ,Thiol ,Physical and Theoretical Chemistry ,Cysteine - Abstract
The thiolysis mechanism of benzylpenicillin has been determined by 1 H NMR and HPLC. The degradation of benzylpenicillin was accelerated when the thiol used presented a β-group capable of acting as a general acid catalyst, such as α-monothioglycerol, 2-mercaptoethanol and mercaptoethylamine. With these thiols, after the formation of the thioester, an intramolecular acyl transfer reaction occurs at a pH far below the pKa of the group acting as a general acid catalyst, which shows that the proton transfer has already occurred, probably in a concerted mechanism with the nucleophilic attack. Rate constants were calculated. The system can be taken as a simple model of the general acid catalyst in serine and cysteine proteases.
- Published
- 2001
31. A new method for the reproducible generation of polymorphs: two forms of sulindac with very different solubilities
- Author
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Antonio Llinas, Robert C. Glen, Karl J. Box, Jonathan M. Goodman, Jonathan C. Burley, Glen, Robert [0000-0003-1759-2914], Goodman, Jonathan [0000-0002-8693-9136], and Apollo - University of Cambridge Repository
- Subjects
Active ingredient ,Sulindac ,Aqueous solution ,Stereochemistry ,Chemistry ,Combinatorial chemistry ,General Biochemistry, Genetics and Molecular Biology ,Bioavailability ,Polymorphism (materials science) ,medicine ,CRYSTAL-STRUCTURES ,Physical stability ,Solubility ,Dissolution ,medicine.drug - Abstract
Polymorphism of drugs has been the subject of intense interest in the pharmaceutical industry for over forty years. Although identical in chemical composition, polymorphs differ in bioavailability, solubility, dissolution rate, chemical and physical stability, melting point, colour, filterability, density, flow properties, and many other properties. The difference in solubility is particularly important for pharmaceuticals, as it can affect drug efficacy, bioavailability and safety. Despite significant investment in processes to find all the possible polymorphs of active pharmaceutical ingredients (APIs), new polymorphs can suddenly appear without warning. Polymorphs tend to convert spontaneously from less stable to more stable forms, and, therefore, it is best to discover and characterize the stable form as early as possible. Ideally the most stable polymorph will be found while the drug candidate is still in the discovery process, so that this is the form used for subsequent testing. The most stable polymorph will be the least soluble and solubility may be a limiting factor in the efficacy of the API. Despite the huge importance of polymorphism in the properties of materials, however, there is no method that can produce all the stable polymorphs of a compound, or even one that can provide confidence that the most stable polymorph has been obtained. Here we describe a new method, `potentiometric cycling for polymorph creation (PC)2', which is able to generate the most stable polymorph in aqueous solution. This new method has been applied to sulindac, a non-steroidal anti-inflammatory drug, which also shows promise in anticancer treatment, producing two polymorphs of this API, including a new more stable one. By adjusting the conditions, this method is able to produce either polymorph exclusively.
- Published
- 2007
32. Chemical Reactivity of Penicillins and Cephalosporins. Intramolecular Involvement of the Acyl-Amido Side Chain
- Author
-
Juan Frau, Michael I. Page, Antonio Llinas, Bartolomé Vilanova, Josefa Donoso, and Francisco Muñoz
- Subjects
Hydrolysis ,Reaction rate constant ,Aqueous solution ,Aminolysis ,Nucleophile ,Chemistry ,Intramolecular force ,Organic Chemistry ,Effective molarity ,Side chain ,Organic chemistry ,Medicinal chemistry - Abstract
The rate of degradation of 6-epi-ampicillin in acidic, neutral, and alkaline aqueous solutions was followed at 35 °C and an ionic strength of 0.5 mol dm-3 (KCl) by high-performance liquid chromatography (HPLC) and spectrophotometric assays. Pseudo-first-order rate constants were determined in a variety of buffer solutions, and the overall pH−rate profile was obtained by extrapolation to zero buffer concentration. The hydrolysis of 6-epi-ampicillin is subject to acid and hydroxide-ion catalysis and, for a penicillin, an unusual pH-independent reaction. Intramolecular general base-catalyzed hydrolysis by the side chain amido group is proposed to explain the enhanced rate of neutral hydrolysis of 6-epi-ampicillin and cephalosporins. The β-lactam of 6-epi-ampicillin also undergoes intramolecular aminolysis by nucleophilic attack of the 6-α side chain amino group to give a stable piperazine-2,5-dione derivative. The low effective molarity for intramolecular aminolysis of only 40 M is partly attributed to the u...
- Published
- 1998
33. Discovery of N-[[1-[2-(tert-butylcarbamoylamino)ethyl]-4-(hydroxymethyl)-4-piperidyl]methyl]-3,5-dichloro-benzamide as a selective T-type calcium channel (Cav3.2) inhibitor
- Author
-
Antonio Llinas, Göran Duker, Annika Åstrand, Victoria Ullah, Qing-Dong Wang, Fabrizio Giordanetto, Grigorios Nikitidis, Fredrik Thorstensson, Emma Lindhardt, Anders Lindqvist, Staffan Karlsson, Nidhal Selmi, Got Högberg, Andreas Wållberg, Laurent Knerr, and Åsa Lindelöf
- Subjects
Clinical Biochemistry ,Drug Evaluation, Preclinical ,Pharmaceutical Science ,Pharmacology ,Biochemistry ,chemistry.chemical_compound ,Calcium Channels, T-Type ,Structure-Activity Relationship ,Dogs ,Heart Rate ,Drug Discovery ,medicine ,Animals ,Humans ,Hydroxymethyl ,Benzamide ,Molecular Biology ,Ion channel ,Mibefradil ,Voltage-dependent calcium channel ,Calcium channel ,Organic Chemistry ,T-type calcium channel ,Calcium Channel Inhibition ,Calcium Channel Blockers ,chemistry ,Benzamides ,Molecular Medicine ,medicine.drug ,Half-Life - Abstract
The T-type calcium channel inhibitor Mibefradil was reported to protect the heart from atrial remodeling, a key process involved in the development of atrial fibrillation and arrhythmias. Mibefradil is not a selective T-type calcium channel inhibitor and also affects the function of different ion channels. Our aim was to develop a selective T-type calcium channel inhibitor to validate the importance of T-type-related pharmacology in atrial fibrillation. Structural optimisation of a previously disclosed hit series focussed on minimising exposure to the central nervous system and improving pharmacokinetic properties, while maintain adequate potency and selectivity. This resulted in the design of N-[[1-[2-(tert-butylcarbamoylamino)ethyl]-4-(hydroxymethyl)-4-piperidyl]methyl]-3,5-dichloro-benzamide, a novel, selective, peripherally restricted chemical probe to verify the role of T-type calcium channel inhibition on atrial fibrillation protection.
- Published
- 2012
34. Oxadiazoles in medicinal chemistry
- Author
-
Jonas Boström, Antonio Llinas, Eric Wellner, Alleyn T. Plowright, and Anders Hogner
- Subjects
ERG1 Potassium Channel ,Databases, Factual ,Stereochemistry ,Static Electricity ,CHO Cells ,In Vitro Techniques ,chemistry.chemical_compound ,Structure-Activity Relationship ,Cricetulus ,Isomerism ,Amide ,Cricetinae ,Drug Discovery ,Static electricity ,Structural isomer ,Molecule ,Structure–activity relationship ,Animals ,Cytochrome P-450 Enzyme Inhibitors ,Humans ,Computer Simulation ,Oxadiazoles ,Aqueous solution ,Chemistry ,Ether-A-Go-Go Potassium Channels ,Partition coefficient ,Solubility ,Cyclization ,Lipophilicity ,Microsomes, Liver ,Molecular Medicine ,Quantum Theory - Abstract
Oxadiazoles are five-membered heteroaromatic rings containing two carbons, two nitrogens, and one oxygen atom, and they exist in different regioisomeric forms. Oxadiazoles are frequently occurring motifs in druglike molecules, and they are often used with the intention of being bioisosteric replacements for ester and amide functionalities. The current study presents a systematic comparison of 1,2,4- and 1,3,4-oxadiazole matched pairs in the AstraZeneca compound collection. In virtually all cases, the 1,3,4-oxadiazole isomer shows an order of magnitude lower lipophilicity (log D), as compared to its isomeric partner. Significant differences are also observed with respect to metabolic stability, hERG inhibition, and aqueous solubility, favoring the 1,3,4-oxadiazole isomers. The difference in profile between the 1,2,4 and 1,3,4 regioisomers can be rationalized by their intrinsically different charge distributions (e.g., dipole moments). To facilitate the use of these heteroaromatic rings, novel synthetic routes for ready access of a broad spectrum of 1,3,4-oxadiazoles, under mild conditions, are described.
- Published
- 2011
35. ChemInform Abstract: Solubility Challenge: Can You Predict Solubilities of 32 Molecules Using a Database of 100 Reliable Measurements?
- Author
-
Jonathan M. Goodman, Antonio Llinas, and Robert C. Glen
- Subjects
Systematic error ,Aqueous solution ,Thermodynamic equilibrium ,Chemistry ,Ionic strength ,Potentiometric titration ,Thermodynamics ,Molecule ,General Medicine ,Solubility - Abstract
Solubility is a key physicochemical property of molecules. Serious deficiencies exist in the consistency and reliability of solubility data in the literature. The accurate prediction of solubility would be very useful. However, systematic errors and lack of metadata associated with measurements greatly reduce the confidence in current models. To address this, we are accurately measuring intrinsic solubility values, and here we report results for a diverse set of 100 druglike molecules at 25 °C and an ionic strength of 0.15 M using the CheqSol approach. This is a highly reproducible potentiometric technique that ensures the thermodynamic equilibrium is reached rapidly. Results with a coefficient of variation higher than 4% were rejected. In addition, the Potentiometric Cycling for Polymorph Creation method, [PC]2, was used to obtain multiple polymorph forms from aqueous solution. We now challenge researchers to predict the intrinsic solubility of 32 other druglike molecules that have been measured but are ...
- Published
- 2008
36. Inhibitors of metallo-beta-lactamase generated from beta-lactam antibiotics
- Author
-
Andrew P. Laws, Antonio Llinas, Michael I. Page, Christian Damblon, and Adriana Badarau
- Subjects
chemistry.chemical_classification ,medicine.drug_class ,Stereochemistry ,medicine.medical_treatment ,Cephalosporin ,beta-Lactams ,Biochemistry ,Turn (biochemistry) ,Hydrolysis ,Kinetics ,Zinc ,Enzyme ,chemistry ,Bacillus cereus ,Enterobacter cloacae ,Metalloproteins ,polycyclic compounds ,medicine ,Thiol ,Beta-lactamase ,Sulfhydryl Compounds ,Enzyme Inhibitors ,beta-Lactamase Inhibitors ,Beta-Lactamase Inhibitors ,Bond cleavage - Abstract
The resistance of bacteria to the normally lethal action of beta-lactam antibiotics is largely due to the production of beta-lactamases that catalyze the hydrolysis of the beta-lactam. One class of these enzymes is a zinc-dependent metallo-beta-lactamase for which there are no clinically available inhibitors. The hydrolysis of cephalosporin beta-lactam antibiotics generates dihydrothiazines which subsequently undergo isomerization at C6 by C-S bond cleavage and through the intermediacy of a thiol. These thiols can be trapped by the beta-lactamase from Bacillus cereus, causing inhibition of the enzyme. The rate of production of the thiol corresponds to the rate of inhibition, and the inhibition constants are in the micromolar range but vary with the nature of the cephalosporin derivative. NMR studies have identified the structure of the thiols causing inhibition and also show that the thiol binds to the zinc ion, which in turn perturbs the metal-bound histidines. Inhibition is slowly removed as the thiol becomes oxidized or undergoes further degradation. The thiol intermediate generated from cephalothin is a slow binding inhibitor. There is no observed inhibition from the analogous degradation products from penicillins.
- Published
- 2005
37. Effects of trkB and trkC neurotrophin receptor agonists on thermal nociception: a behavioral and electrophysiological study
- Author
-
Antonio Llinas, Lorne M. Mendell, and X.-Q. Shu
- Subjects
Male ,medicine.medical_specialty ,Hot Temperature ,Tropomyosin receptor kinase B ,Neurotrophin-3 ,Receptors, Nerve Growth Factor ,Tropomyosin receptor kinase A ,Tropomyosin receptor kinase C ,Neurotrophin 3 ,Internal medicine ,medicine ,Noxious stimulus ,Reaction Time ,Animals ,Receptor, trkC ,Nerve Growth Factors ,Rats, Wistar ,Receptor, Ciliary Neurotrophic Factor ,Brain-derived neurotrophic factor ,biology ,Behavior, Animal ,Chemistry ,Brain-Derived Neurotrophic Factor ,Nociceptors ,Receptor Protein-Tyrosine Kinases ,Rats ,Electrophysiology ,Anesthesiology and Pain Medicine ,Endocrinology ,Neuroprotective Agents ,nervous system ,Neurology ,Hyperalgesia ,Nociceptor ,biology.protein ,Female ,Neurology (clinical) ,Neuroscience ,Neurotrophin - Abstract
Nerve-growth factor (NGF), a member of the neurotrophin family, plays an important role in nociceptor function. Prompted by a previous uinexpected finding that NT-4/5, as well as NGF sensitizes single nociceptors to noxious heat, we have explored the relative potency of all neurotrophins in eliciting thermal hyperalgesia. NGF, brain-derived neurotrophic factor (BDNF), NT-4/5 and NT-3 were injected locally into the hind paw of rats, and the behavioral response to noxious heat was compared with that from the other paw that received an identical injection of vehicle. Like NGF, agonists of tyrosine kinaseB (trkB) receptors (NT-4/5 and BDN F) induced thermal hyperalgesia in the first 5 h after treatment (NT-4/5 > BDNF) but the effect had worn off by 24 h. In contrast, the trkC agonist NT-3 had no effect on the response to noxious heat. Electrophysiological recordings from single C-fibres in the in vitro skin-saphenous nerve preparation revealed sensitization to noxious heat stimuli after direct application of BDNF to the receptive field, as previously noted for NT-4/5, and in parallel with the behavioral findings. NT-3 was ineffective as in the behavioral studies. These results suggest that trkB agonists BDNF and NT-4/5 as well as the trkA agonist NGF can regulate nociceptive responses to noxious heat.
- Published
- 1999
38. Two New Polymorphic Cocrystals of Zafirlukast: Preparation,Crystal Structure, and Stability Relations.
- Author
-
Antonio Llinas, Rafael Barbas, Mercè Font-Bardia, MichaelJ. Quayle, Sitaram Velaga, and Rafel Prohens
- Subjects
- *
POLYMORPHISM (Crystallography) , *CRYSTAL structure , *CHEMICAL stability , *PIPERAZINE , *X-ray diffraction , *BUTANOL - Abstract
Twonew cocrystals of zafirlukast with piperazine, existing infive different solid forms, have been discovered during a cocrystalscreening. The crystal structure of one of these forms has been determinedby single crystal X-ray diffraction, and the stability landscape ofthe crystalline forms of the new cocrystal has been studied. In thepresent article, we extend the knowledge about the solid state ofthis important pharmaceutical drug for the treatment of asthma byreporting the crystal structures of two new solvates (acetonitrileand butanol) and the elusive anhydrous Form X, which have been solvedby single crystal X-ray diffraction. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
39. Equilibrium solubility measurement of ionizable drugs – consensus recommendations for improving data quality
- Author
-
Alex Avdeef, Elisabet Fuguet, Antonio Llinàs, Clara Ràfols, Elisabeth Bosch, Gergely Völgyi, Tatjana Verbić, Elena Boldyreva, and Krisztina Takács-Novák
- Subjects
shake-flask solubility ,intrinsic solubility ,water solubility ,buffer solubility ,thermodynamic solubility ,Bjerrum curve ,CheqSol ,Potentiometric Cycling for Polymorph Creation ,Henderson-Hasselbalch equation ,aggregates ,oligomers ,micelles ,hydrates ,Therapeutics. Pharmacology ,RM1-950 - Abstract
This commentary addresses data quality in equilibrium solubility measurement in aqueous solution. Broadly discussed is the “gold standard” shake-flask (SF) method used to measure equilibrium solubility of ionizable drug-like molecules as a function of pH. Many factors affecting the quality of the measurement are recognized. Case studies illustrating the analysis of both solution and solid state aspects of solubility measurement are presented. Coverage includes drug aggregation in solution (sub-micellar, micellar, complexation), use of mass spectrometry to assess aggregation in saturated solutions, solid state characterization (salts, polymorphs, cocrystals, polymorph creation by potentiometric method), solubility type (water, buffer, intrinsic), temperature, ionic strength, pH measurement, buffer issues, critical knowledge of the pKa, equilibration time (stirring and sedimentation), separating solid from saturated solution, solution handling and adsorption to untreated surfaces, solubility units, and tabulation/graphic presentation of reported data. The goal is to present cohesive recommendations that could lead to better assay design, to result in improved quality of measurements, and to impart a deeper understanding of the underlying solution chemistry in suspensions of drug solids.
- Published
- 2016
- Full Text
- View/download PDF
40. Thiol-catalysed hydrolysis of benzylpenicillin
- Author
-
Juan Frau, Antonio Llinas, B. Vilanova, Josefa Donoso, Michael I. Page, and Francisco Muñoz
- Subjects
chemistry.chemical_classification ,Solvent ,Aminolysis ,Thiolysis ,Chemistry ,Tetrahedral carbonyl addition compound ,Inorganic chemistry ,Thiol ,Reactivity (chemistry) ,Thioester ,Medicinal chemistry ,Catalysis - Abstract
Thiolysis of benzylpenicillin has been investigated by HPLC and 1H-NMR techniques. Thiols catalyse the hydrolysis of benzylpenicillin through the formation of a thioester intermediate. The catalytically reactive form of the thiol has been demonstrated to be the thiolate anion. Variation of reactivity with changing basicity of the thiolate anion generates a Bronsted βnuc value of 0.96, indicating that the breakdown of the tetrahedral intermediate is the rate-limiting step, as occurs in aminolysis and alcoholysis. Solvent kinetic isotope effects of 2.2–2.4 indicate that the solvent, water, probably acts as a general acid catalyst in the breakdown of the tetrahedral intermediate. PM3 theoretical calculations support the proposal that breakdown of the tetrahedral intermediate is rate-limiting. The experimental activation energies for the thiolysis of benzylpenicillin vary from 6.9 to 10.4 kcal mol−1.
Catalog
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