223 results on '"Anuradha Roy"'
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2. Quantification and characterization of biological activities of glansreginin A in black walnuts (Juglans nigra)
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Khanh-Van Ho, Hsien-Yeh Hsieh, Anuradha Roy, Sarah Foote, Peter McDonald, Mark V. Coggeshall, Hideyuki Ito, Zhentian Lei, Lloyd W. Sumner, George C. Stewart, and Chung-Ho Lin
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Medicine ,Science - Abstract
Abstract Glansreginin A has been reported to be an indicator of the quality of walnuts (Juglans spp.). However, bioactive properties of glansreginin A have not been adequately explored. In the present study, we quantified concentrations of glansreginin A in black walnuts (Juglans nigra) using high performance liquid chromatography-tandem mass spectrometry (HPLC–MS/MS) and performed an array of in vitro bioassays to characterize biological activities (e.g., antibacterial, antioxidant, anticancer capacities) of this compound. Results from HPLC–MS/MS analysis indicated that glansreginin A was presented in all 12 black cultivars examined and its contents were variable among black walnut cultivars, ranged from 6.8 mg/kg (Jackson) to 47.0 mg/kg (Hay). Glansreginin A possessed moderate antibacterial activities against Gram-positive pathogens (Staphylococcus aureus and Bacillus anthracis). This compound exhibited no antioxidant activities, did not induce the activity of antioxidant response element signaling pathways, and exerted no antiproliferative effects on tumorigenic alveolar epithelial cells and non-tumorigenic lung fibroblast cells.
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- 2023
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3. Empowered Relief, cognitive behavioral therapy, and health education for people with chronic pain: a comparison of outcomes at 6-month Follow-up for a randomized controlled trial
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Beth D. Darnall, John W. Burns, Juliette Hong, Anuradha Roy, Kristin Slater, Heather Poupore-King, Maisa S. Ziadni, Dokyoung S. You, Corinne Jung, Karon F. Cook, Kate Lorig, Lu Tian, and Sean C. Mackey
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Anesthesiology ,RD78.3-87.3 - Abstract
Abstract. Introduction:. We previously conducted a 3-arm randomized trial (263 adults with chronic low back pain) which compared group-based (1) single-session pain relief skills intervention (Empowered Relief; ER); (2) 8-session cognitive behavioral therapy (CBT) for chronic back pain; and (3) single-session health and back pain education class (HE). Results suggested non-inferiority of ER vs. CBT at 3 months post-treatment on an array of outcomes. Methods:. Here, we tested the durability of treatment effects at 6 months post-treatment. We examined group differences in primary and secondary outcomes at 6 months and the degree to which outcomes eroded or improved from 3-month to 6-month within each treatment group. Results:. Empowered Relief remained non-inferior to CBT on most outcomes, whereas both ER and CBT remained superior to HE on most outcomes. Outcome improvements within ER did not decrease significantly from 3-month to 6-month, and indeed ER showed additional 3- to 6-month improvements on pain catastrophizing, pain bothersomeness, and anxiety. Effects of ER at 6 months post-treatment (moderate term outcomes) kept pace with effects reported by participants who underwent 8-session CBT. Conclusions:. The maintenance of these absolute levels implies strong stability of ER effects. Results extend to 6 months post-treatment previous findings documenting that ER and CBT exhibit similarly potent effects on outcomes.
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- 2024
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4. Discovery of small molecule inhibitors of Plasmodium falciparum apicoplast DNA polymerase
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Supreet Kaur, Nicholas S. Nieto, Peter McDonald, Josh R. Beck, Richard B. Honzatko, Anuradha Roy, and Scott W. Nelson
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Malaria ,high-throughput screening ,DNA polymerase ,apicoplast ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Malaria is caused by infection with protozoan parasites of the Plasmodium genus, which is part of the phylum Apicomplexa. Most organisms in this phylum contain a relic plastid called the apicoplast. The apicoplast genome is replicated by a single DNA polymerase (apPOL), which is an attractive target for anti-malarial drugs. We screened small-molecule libraries (206,504 compounds) using a fluorescence-based high-throughput DNA polymerase assay. Dose/response analysis and counter-screening identified 186 specific apPOL inhibitors. Toxicity screening against human HepaRG human cells removed 84 compounds and the remaining were subjected to parasite killing assays using chloroquine resistant P. falciparum parasites. Nine compounds were potent inhibitors of parasite growth and may serve as lead compounds in efforts to discover novel malaria drugs.
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- 2022
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5. Management of threatened abortion through Ayurvedic intervention: A case report
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Anuradha Roy, Binay Sen, and Monisha VM
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Vaginal bleeding ,Early pregnancy ,Garbhasrava ,Shatadhauta ghrita ,Gairika ,Miscellaneous systems and treatments ,RZ409.7-999 - Abstract
Untreated vaginal bleeding during pregnancy can potentially give rise to various complications, with the incidence ranging from 12% to 40% of all cases. In Ayurveda, this condition is referred to as garbhashrava, which encompasses the manifestation of abortion, with raktadarshana (vaginal bleeding) serving as a key diagnostic symptom.In this present case study, 28 years old second gravida woman with amenorrhea of 3 months 08 days presented with vaginal bleeding (1 pad/day) for 15 days on and off. The case was diagnosed as first-trimester vaginal bleeding due to low-lying posterior placenta (placental cause). Pregnancy outcome depends on the severity of bleeding thus early diagnosis and proper management are the priority. Traditionally, the conventional approach involves the use of hemostatic agents and injectable hormonal support, which is an invasive method. In this present study, a local non-invasive method i.e application of gairika choorna 5 g with shatadhauta ghrita 15–20 g in the form of lepa (anointment) below the umbilicus was advised thrice a day for 1 week. This treatment resulted in complete relief from vaginal bleeding within a one-week period while maintaining the pregnancy.
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- 2023
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6. Kshara (Alkali) in the prevention and treatment of Coronavirus Disease 2019: An ayurvedic specialized pharmacotherapy w.s.r. to the traditional diet of Northeast India
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Binay Sen and Anuradha Roy
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alkali ,ayurveda ,blood ph ,coronavirus disease 2019 ,khar ,kolakhar ,kshara ,northeast india ,respiratory virus ,sagal hawai ,Other systems of medicine ,RZ201-999 - Abstract
Objective: At present, the entire world is fighting against the coronavirus disease 2019 (COVID-19) pandemic. Despite all the possible efforts, there is no proven and effective medicine or vaccine discovered till date. There are strong reasons for demanding alternative therapies that could be used in the prevention and treatment of COVID-19. Data Source and Review methods: An extensive literary and multiple database (Science Direct, PubMed, Springer, and Google Scholar) search was carried out for related published works on kshara and alkali in the domains of Ayurvedic, traditional, and modern knowledge. Kshara (alkali) made of aswagandha, tulasi, and pippali is used as a medicine and a dietetic adjuvant in respiratory diseases in Ayurveda. “Khar” is one of the popular traditional food items of Northeast India, well known for different therapeutics. Kshara (alkaline water), prepared from banana and black gram, contains a rich amount of potassium (K), chloride (Cl), calcium (Ca), magnesium (Mg), and iron (Fe), with pH of 10.22–13.00 and 10.02, respectively. Kolakhar (alkali made of banana) has been found to inhibit the growth of different pathogens in in vitro studies. Result and Discussion: Alkaline environment within the normal range of blood pH positively influences the inflammatory, immune, and antiviral mechanisms of the body, which is said to be one of the reasons to keep the body healthy and immune to disease. There is scientific evidence regarding the effectiveness of kshara in treating viral respiratory infections. In vitro studies have demonstrated the inactivation effect of alkaline medium on respiratory viruses. Conclusion: Kshara could be a potential pharmacotherapy and food adjuvant in the prevention and treatment of COVID-19.
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- 2020
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7. Repurposing Avasimibe to Inhibit Bacterial Glycosyltransferases
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Md Kamrul Hasan, Samir El Qaidi, Peter McDonald, Anuradha Roy, and Philip R. Hardwidge
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type three secretion system effectors ,glycosyltransferase ,enteric bacteria ,Medicine - Abstract
We are interested in identifying and characterizing small molecule inhibitors of bacterial virulence factors for their potential use as anti-virulence inhibitors. We identified from high-throughput screening assays a potential activity for avasimibe, a previously characterized acyl-coenzyme A: cholesterol acyltransferase inhibitor, in inhibiting the NleB and SseK arginine glycosyltransferases from Escherichia coli and Salmonella enterica, respectively. Avasimibe inhibited the activity of the Citrobacter rodentium NleB, E. coli NleB1, and S. enterica SseK1 enzymes, without affecting the activity of the human serine/threonine N-acetylglucosamine (O-GlcNAc) transferase. Avasimibe was not toxic to mammalian cells at up to 200 µM and was neither bacteriostatic nor bactericidal at concentrations of up to 125 µM. Doses of 10 µM avasimibe were sufficient to reduce S. enterica abundance in RAW264.7 macrophage-like cells, and intraperitoneal injection of avasimibe significantly reduced C. rodentium survival in mice, regardless of whether the avasimibe was administered pre- or post-infection. We propose that avasimibe or related derivates created using synthetic chemistry may have utility in preventing or treating bacterial infections by inhibiting arginine glycosyltransferases that are important to virulence.
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- 2022
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8. Mean Equality Tests for High-Dimensional and Higher-Order Data with k-Self Similar Compound Symmetry Covariance Structure
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Ricardo Leiva and Anuradha Roy
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array-variate data ,eigenblock ,high dimensional data ,Wishart distribution ,Hotelling’s T2 statistic ,Lawley–Hotelling trace distribution ,Mathematics ,QA1-939 - Abstract
An extension of the D2 test statistic to test the equality of mean for high-dimensional and k-th order array-variate data using k-self similar compound symmetry (k-SSCS) covariance structure is derived. The k-th order data appear in many scientific fields including agriculture, medical, environmental and engineering applications. We discuss the property of this k-SSCS covariance structure, namely, the property of Jordan algebra. We formally show that our D2 test statistic for k-th order data is an extension or the generalization of the D2 test statistic for second-order data and for third-order data, respectively. We also derive the D2 test statistic for third-order data and illustrate its application using a medical dataset from a clinical trial study of the eye disease glaucoma. The new test statistic is very efficient for high-dimensional data where the estimation of unstructured variance-covariance matrix is not feasible due to small sample size.
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- 2022
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9. Comparative Efficacy and Mechanisms of a Single-Session Pain Psychology Class in Chronic Low Back Pain: Study Protocol for a Randomized Controlled Trial
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Beth D. Darnall, Maisa S. Ziadni, Anuradha Roy, Ming-Chih Kao, John A. Sturgeon, Karon F. Cook, Kate Lorig, John W. Burns, and Sean C. Mackey
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Back pain ,Pain catastrophizing ,Cognitive behavioral therapy ,Chronic pain ,Psychology ,Treatment ,Medicine (General) ,R5-920 - Abstract
Abstract Background The Institute of Medicine (IOM) reported that chronic pain affects about 100 million U.S. adults, with chronic low back pain (CLBP) cited as the most prevalent type. Pain catastrophizing is a psychological construct shown to predict the development and trajectory of chronic pain and patient response to pain treatments. While effective treatment for pain catastrophizing typically includes eight-session groups of cognitive behavioral therapy (CBT), a single-session targeted treatment class yielded promising results which, if replicated and extended, could prove to efficiently and cost-effectively reduce pain catastrophizing. In this trial, we seek to determine the comparative efficacy of this novel single-session pain catastrophizing class to an eight-session course of pain CBT and a single-session back pain health education class. We will also explore the psychosocial mechanisms and outcomes of pain catastrophizing treatment. Methods In this trial we will randomize 231 individuals with CLBP to one of three treatment arms: (1) pain-CBT (eight weekly 2-h group sessions with home exercises and readings); (2) a single 2-h pain catastrophizing class; or (3) a single 2-h back pain health education class (active control). For the primary outcome of pain catastrophizing, the trial is designed as a non-inferiority test between pain-CBT and the single-session pain catastrophizing class, and as a superiority test between the single-session pain catastrophizing class and the health education class. Team researchers masked to treatment assignment will assess outcomes up to six months post treatment. Discussion If the single-session targeted pain catastrophizing class is found to be an effective treatment for patients with CLBP, this low cost and low burden treatment could dismantle many of the current barriers and burdens of effective pain care. Further, elucidation of the mechanisms of pain catastrophizing treatments will facilitate future research on the topic as well as further development and refinement of treatments. Trial registration ClinicalTrials.gov, NCT03167086. Registered on 22 May 2017.
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- 2018
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10. Cooperative p16 and p21 action protects female astrocytes from transformation
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Najla Kfoury, Tao Sun, Kwanha Yu, Nathan Rockwell, Kelsey L. Tinkum, Zongtai Qi, Nicole M. Warrington, Peter McDonald, Anuradha Roy, Scott J. Weir, Carrie A. Mohila, Benjamin Deneen, and Joshua B. Rubin
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Sex differences ,Glioblastoma ,Glioma ,Rb ,p16 ,p21 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Mechanisms underlying sex differences in cancer incidence are not defined but likely involve dimorphism (s) in tumor suppressor function at the cellular and organismal levels. As an example, sexual dimorphism in retinoblastoma protein (Rb) activity was shown to block transformation of female, but not male, murine astrocytes in which neurofibromin and p53 function was abrogated (GBM astrocytes). Correlated sex differences in gene expression in the murine GBM astrocytes were found to be highly concordant with sex differences in gene expression in male and female GBM patients, including in the expression of components of the Rb and p53 pathways. To define the basis of this phenomenon, we examined the functions of the cyclin dependent kinase (CDK) inhibitors, p16, p21 and p27 in murine GBM astrocytes under conditions that promote Rb-dependent growth arrest. We found that upon serum deprivation or etoposide-induced DNA damage, female, but not male GBM astrocytes, respond with increased p16 and p21 activity, and cell cycle arrest. In contrast, male GBM astrocytes continue to proliferate, accumulate chromosomal aberrations, exhibit enhanced clonogenic cell activity and in vivo tumorigenesis; all manifestations of broad sex differences in cell cycle regulation and DNA repair. Differences in tumorigenesis disappeared when female GBM astrocytes are also rendered null for p16 and p21. These data elucidate mechanisms underlying sex differences in cancer incidence and demonstrate sex-specific effects of cytotoxic and targeted therapeutics. This has critical implications for lab and clinical research.
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- 2018
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11. More on the Supremum Statistic to Test Multivariate Skew-Normality
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Timothy Opheim and Anuradha Roy
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Monte Carlo simulations ,multivariate skewness ,skew-normal distribution ,supremum test ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
This review is about verifying and generalizing the supremum test statistic developed by Balakrishnan et al. Exhaustive simulation studies are conducted for various dimensions to determine the effect, in terms of empirical size, of the supremum test statistic developed by Balakrishnan et al. to test multivariate skew-normality. Monte Carlo simulation studies indicate that the Type-I error of the supremum test can be controlled reasonably well for various dimensions for given nominal significance levels 0.05 and 0.01. Cut-off values are provided for the number of samples required to attain the nominal significance levels 0.05 and 0.01. Some new and relevant information of the supremum test statistic are reported here.
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- 2021
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12. Delivering community-led integrated HIV and sexual and reproductive health services for sex workers: A mixed methods evaluation of the DIFFER study in Mysore, South India.
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Sushena Reza-Paul, Lisa Lazarus, Raviprakash Maiya, K T Venukumar, Bhagya Lakshmi, Anuradha Roy, Partha Haldar, Michele Andina, Yves Lafort, and Robert Lorway
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Medicine ,Science - Abstract
IntroductionWomen in developing countries continue to face barriers to accessing sexual and reproductive health (SRH) services, with marginalized women facing increased challenges to accessing care. The Diagonal Interventions to Fast-Forward Enhanced Reproductive Health (DIFFER) project implemented a package of interventions for female sex workers and women from the general population which integrated horizontal health services for the general population with existing vertical targeted interventions aimed at sex workers with an aim to improve SRH and HIV services. We present an outcome evaluation of the DIFFER project in terms of uptake rates for SRH services among sex workers in Mysore, India.MethodsAshodaya Samithi, a sex worker-led organization, implemented the DIFFER strategy through their community-based clinic and a Well Women Clinic (WWC), established at a partner private hospital that provided SRH services for women living with HIV. Mixed methods were used to evaluate the intervention that included a baseline (2012-13) and end of project (2015-16) cross sectional surveys (CSS), focus group discussions (FGDs), key informant interviews, and analysis of service statistics from 2013-2016.ResultsThe CSS found that condom use, STI testing, and treatment were high before, and throughout the intervention; cervical cancer screening and treatment increased significantly, from 11.5% to 56% (aOR 9.85, pConclusionThe DIFFER strategy demonstrated that SRH service uptake can occur in conjuction with HIV services offered to sex workers. This model of integrated service delivery has been accepted by policy makers and needs further analysis for scaling up.
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- 2019
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13. 14-(4-Chlorophenyl)-14H-dibenzo[a,j]xanthene
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Anuradha Roy Choudhury, Satya B. Paul, and Sudip Choudhury
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crystal structure ,xanthene ,Crystallography ,QD901-999 - Abstract
In the title compound, C27H17ClO, the xanthene fused-ring system adopts a shallow butterfly conformation [dihedral angle between the two halves of the ring system = 22.9 (1)°. The dihedral angle between the central heteroyclic ring and the pendant chlorophenyl group is 87.60 (8)°. In the crystal, molecules are linked by weak C—H...π interactions.
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- 2019
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14. YM155 Inhibits NleB and SseK Arginine Glycosyltransferase Activity
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Congrui Zhu, Samir El Qaidi, Peter McDonald, Anuradha Roy, and Philip R. Hardwidge
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type three secretion system effectors ,glycosyltransferase ,enteric bacteria ,Medicine - Abstract
The type III secretion system effector proteins NleB and SseK are glycosyltransferases that glycosylate protein substrates on arginine residues. We conducted high-throughput screening assays on 42,498 compounds to identify NleB/SseK inhibitors. Such small molecules may be useful as mechanistic probes and may have utility in the eventual development of anti-virulence therapies against enteric bacterial pathogens. We observed that YM155 (sepantronium bromide) inhibits the activity of Escherichia coli NleB1, Citrobacter rodentium NleB, and both Salmonella enterica SseK1 and SseK2. YM155 was not toxic to mammalian cells, nor did it show cross-reactivity with the mammalian O-linked N-acetylglucosaminyltransferase (OGT). YM155 reduced Salmonella survival in mouse macrophage-like cells but had no direct impact on bacterial growth rates, suggesting YM155 may have utility as a potential anti-virulence inhibitor.
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- 2021
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15. Profiling Anticancer and Antioxidant Activities of Phenolic Compounds Present in Black Walnuts (Juglans nigra) Using a High-Throughput Screening Approach
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Khanh-Van Ho, Anuradha Roy, Sarah Foote, Phuc H. Vo, Namrita Lall, and Chung-Ho Lin
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penta-O-galloyl-β-d-glucose ,polyphenol ,antioxidant response element ,Organic chemistry ,QD241-441 - Abstract
Our recent studies have demonstrated multiple health-promoting benefits from black walnut kernels. These biological functions of black walnuts are likely associated with their bioactive constituents. Characterization of phenolic compounds found in black walnut could point out underexplored bioactive activities of black walnut extracts and promote the development of novel applications of black walnut and its by-products. In the present study, we assessed bioactivity profiles of phenolic compounds identified in the kernels of black walnuts using a high-throughput screening (HTS) approach. Black walnut phenolic compounds were evaluated in terms of their total antioxidant capacity, antioxidant response element (ARE) induction, and anticancer activities. The anticancer activities were identified by evaluating the effects of the phenolic compounds on the growth of the tumorigenic alveolar epithelial cells (A549) and non-tumorigenic lung fibroblast cells (MRC-5). Out of 16 phenolic compounds tested, several compounds (penta-O-galloyl-β-d-glucose, epicatechin gallate, quercetin, (–)-epicatechin, rutin, quercetin 3-β-d-glucoside, gallic acid, (+)-catechin, ferulic acid, syringic acid) exerted antioxidant activities that were significantly higher compared to Trolox, which was used as a control. Two phenolic compounds, penta-O-galloyl-β-d-glucose and quercetin 3-β-d-glucoside, exhibited antiproliferative activities against both the tumorigenic alveolar epithelial cells (A549) and non-tumorigenic lung fibroblast cells (MRC-5). The antioxidant activity of black walnut is likely driven not only by penta-O-galloyl-β-d-glucose but also by a combination of multiple phenolic compounds. Our findings suggested that black walnut extracts possibly possess anticancer activities and supported that penta-O-galloyl-β-d-glucose could be a potential bioactive agent for the cosmetic and pharmaceutical industries.
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- 2020
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16. Identification of Vaccinia Virus Inhibitors and Cellular Functions Necessary for Efficient Viral Replication by Screening Bioactives and FDA-Approved Drugs
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Chen Peng, Yanan Zhou, Shuai Cao, Anil Pant, Marlene L. Campos Guerrero, Peter McDonald, Anuradha Roy, and Zhilong Yang
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poxvirus ,vaccinia virus ,STAT3 ,Gaussia luciferase ,high-throughput screening ,small molecule inhibitor ,Medicine - Abstract
Four decades after the eradication of smallpox, poxviruses continue to threaten the health of humans and other animals. Vaccinia virus (VACV) was used as the vaccine that successfully eradicated smallpox and is a prototypic member of the poxvirus family. Many cellular pathways play critical roles in productive poxvirus replication. These pathways provide opportunities to expand the arsenal of poxvirus antiviral development by targeting the cellular functions required for efficient poxvirus replication. In this study, we developed and optimized a secreted Gaussia luciferase-based, simplified assay procedure suitable for high throughput screening. Using this procedure, we screened a customized compound library that contained over 3200 bioactives and FDA (Food and Drug Administration)-approved chemicals, most having known cellular targets, for their inhibitory effects on VACV replication. We identified over 140 compounds that suppressed VACV replication. Many of these hits target cellular pathways previously reported to be required for efficient VACV replication, validating the effectiveness of our screening. Importantly, we also identified hits that target cellular functions with previously unknown roles in the VACV replication cycle. Among those in the latter category, we verified the antiviral role of several compounds targeting the janus kinase/signal transducer and activator of transcription-3 (JAK/STAT3) signaling pathway by showing that STAT3 inhibitors reduced VACV replication. Our findings identify pathways that are candidates for use in the prevention and treatment of poxvirus infections and additionally provide a foundation to investigate diverse cellular pathways for their roles in poxvirus replications.
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- 2020
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17. High-Throughput Screening for Bacterial Glycosyltransferase Inhibitors
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Samir El Qaidi, Congrui Zhu, Peter McDonald, Anuradha Roy, Pradip Kumar Maity, Digamber Rane, Chamani Perera, and Philip R. Hardwidge
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bacterial pathogenesis ,glycosylteransferase ,innate immnuity ,signal transduction ,virulence ,type III secreted effector protein ,Microbiology ,QR1-502 - Abstract
The enteropathogenic and enterohemorrhagic Escherichia coli NleB proteins as well as the Salmonella enterica SseK proteins are type III secretion system effectors that function as glycosyltransferase enzymes to post-translationally modify host substrates on arginine residues. This modification is unusual because it occurs on the guanidinium groups of arginines, which are poor nucleophiles, and is distinct from the activity of the mammalian O-linked N-acetylglucosaminyltransferase. We conducted high-throughput screening assays to identify small molecules that inhibit NleB/SseK activity. Two compounds, 100066N and 102644N, both significantly inhibited NleB1, SseK1, and SseK2 activities. Addition of these compounds to cultured mammalian cells was sufficient to inhibit NleB1 glycosylation of the tumor necrosis factor receptor type 1-associated DEATH domain protein. These compounds were also capable of inhibiting Salmonella enterica strain ATCC 14028 replication in mouse macrophage-like cells. Neither inhibitor was significantly toxic to mammalian cells, nor showed in vitro cross-reactivity with the mammalian O-linked N-acetylglucosaminyltransferase. These compounds or derivatives generated from medicinal chemistry refinements may have utility as a potential alternative therapeutic strategy to antibiotics or as reagents to further the study of bacterial glycosyltransferases.
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- 2018
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18. Comparative oncology approach to drug repurposing in osteosarcoma.
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Alejandro Parrales, Peter McDonald, Megan Ottomeyer, Anuradha Roy, Frank J Shoenen, Melinda Broward, Tyce Bruns, Douglas H Thamm, Scott J Weir, Kathleen A Neville, Tomoo Iwakuma, and Joy M Fulbright
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Medicine ,Science - Abstract
BACKGROUND:Osteosarcoma is an orphan disease for which little improvement in survival has been made since the late 1980s. New drug discovery for orphan diseases is limited by the cost and time it takes to develop new drugs. Repurposing already approved FDA-drugs can help overcome this limitation. Another limitation of cancer drug discovery is the lack of preclinical models that accurately recapitulate what occurs in humans. For OS using dogs as a model can minimize this limitation as OS in canines develops spontaneously, is locally invasive and metastasizes to the lungs as it does in humans. METHODS:In our present work we used high-throughput screens to identify drugs from a library of 2,286 FDA-approved drugs that demonstrated selective growth inhibition against both human and canine OS cell lines. The identified lead compound was then tested for synergy with 7 other drugs that have demonstrated activity against OS. These results were confirmed with in vitro assays and an in vivo murine model of OS. RESULTS:We identified 13 drugs that demonstrated selective growth inhibition against both human and canine OS cell lines. Auranofin was selected for further in vitro combination drug screens. Auranofin showed synergistic effects with vorinostat and rapamycin on OS viability and apoptosis induction. Auranofin demonstrated single-agent growth inhibition in both human and canine OS xenografts, and cooperative growth inhibition was observed in combination with rapamycin or vorinostat. There was a significant decrease in Ki67-positive cells and an increase in cleaved caspase-3 levels in tumor tissues treated with a combination of auranofin and vorinostat or rapamycin. CONCLUSIONS:Auranofin, alone or in combination with rapamycin or vorinostat, may be useful new treatment strategies for OS. Future studies may evaluate the efficacy of auranofin in dogs with OS as a prelude to human clinical evaluation.
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- 2018
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19. Natural product (−)‐gossypol inhibits colon cancer cell growth by targeting RNA‐binding protein Musashi‐1
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Lan Lan, Carl Appelman, Amber R. Smith, Jia Yu, Sarah Larsen, Rebecca T. Marquez, Hao Liu, Xiaoqing Wu, Philip Gao, Anuradha Roy, Asokan Anbanandam, Ragul Gowthaman, John Karanicolas, Roberto N. De Guzman, Steven Rogers, Jeffrey Aubé, Min Ji, Robert S. Cohen, Kristi L. Neufeld, and Liang Xu
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RNA binding protein ,Wnt ,Notch ,Musashi-1 ,Colon cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Musashi‐1 (MSI1) is an RNA‐binding protein that acts as a translation activator or repressor of target mRNAs. The best‐characterized MSI1 target is Numb mRNA, whose encoded protein negatively regulates Notch signaling. Additional MSI1 targets include the mRNAs for the tumor suppressor protein APC that regulates Wnt signaling and the cyclin‐dependent kinase inhibitor P21WAF−1. We hypothesized that increased expression of NUMB, P21 and APC, through inhibition of MSI1 RNA‐binding activity might be an effective way to simultaneously downregulate Wnt and Notch signaling, thus blocking the growth of a broad range of cancer cells. We used a fluorescence polarization assay to screen for small molecules that disrupt the binding of MSI1 to its consensus RNA binding site. One of the top hits was (−)‐gossypol (Ki = 476 ± 273 nM), a natural product from cottonseed, known to have potent anti‐tumor activity and which has recently completed Phase IIb clinical trials for prostate cancer. Surface plasmon resonance and nuclear magnetic resonance studies demonstrate a direct interaction of (−)‐gossypol with the RNA binding pocket of MSI1. We further showed that (−)‐gossypol reduces Notch/Wnt signaling in several colon cancer cell lines having high levels of MSI1, with reduced SURVIVIN expression and increased apoptosis/autophagy. Finally, we showed that orally administered (−)‐gossypol inhibits colon cancer growth in a mouse xenograft model. Our study identifies (−)‐gossypol as a potential small molecule inhibitor of MSI1‐RNA interaction, and suggests that inhibition of MSI1's RNA binding activity may be an effective anti‐cancer strategy.
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- 2015
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20. Targeting Epithelial-Mesenchymal Transition for Identification of Inhibitors for Pancreatic Cancer Cell Invasion and Tumor Spheres Formation.
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Kishore Polireddy, Ruochen Dong, Peter R McDonald, Tao Wang, Brendan Luke, Ping Chen, Melinda Broward, Anuradha Roy, and Qi Chen
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Medicine ,Science - Abstract
Pancreatic cancer has an enrichment of stem-like cancer cells (CSCs) that contribute to chemoresistant tumors prone to metastasis and recurrence. Drug screening assays based on cytotoxicity cannot identify specific CSC inhibitors, because CSCs comprise only a small portion of cancer cell population, and it is difficult to propagate stable CSC populations in vitro for high-throughput screening (HTS) assays. Based on the important role of cancer cell epithelial-to-mesenchymal transition (EMT) in promoting CSCs, we hypothesized that inhibition of EMT can be a useful strategy for inhibiting CSCs, and therefore a feasible approach for HTS can be built for identification of CSC inhibitors, based on assays detecting EMT inhibition.An immunofluorescent assay was established and optimized for HTS to identify compounds that enhance E-cadherin expression, as a hallmark of inhibition of EMT. Four chemical libraries containing 41,472 compounds were screened in PANC-1 pancreatic cancer cell line. Positive hits were validated for EMT and CSC inhibition in vitro using sphere formation assay, western blotting, immune fluorescence, and scratch assay.Initial hits were refined to 73 compounds with a secondary screening, among which 17 exhibited concentration dependent induction of E-cadherin expression. Six compounds were selected for further study which belonged to 2 different chemical structural clusters. A novel compound 1-(benzylsulfonyl) indoline (BSI, Compound #38) significantly inhibited pancreatic cancer cell migration and invasion. BSI inhibited histone deacetylase, increased histone 4 acetylation preferably, resulting in E-cadherin up-regulation. BSI effectively inhibited tumor spheres formation. Six more analogues of BSI were tested for anti-migration and anti-CSC activities.This study demonstrated a feasible approach for discovery of agents targeting EMT and CSCs using HTS, and identified a class of novel chemicals that could be developed as anti-EMT and anti-CSC drug leads.
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- 2016
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21. Where Do Female Sex Workers Seek HIV and Reproductive Health Care and What Motivates These Choices? A Survey in 4 Cities in India, Kenya, Mozambique and South Africa.
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Yves Lafort, Ross Greener, Anuradha Roy, Letitia Greener, Wilkister Ombidi, Faustino Lessitala, Hassan Haghparast-Bidgoli, Mags Beksinska, Peter Gichangi, Sushena Reza-Paul, Jenni A Smit, Matthew Chersich, and Wim Delva
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Medicine ,Science - Abstract
A baseline cross-sectional survey among female sex workers (FSWs) was conducted in four cities within the context of an implementation research project aiming to improve FSWs' access to HIV, and sexual and reproductive health (SRH) services. The survey measured where FSWs seek HIV/SRH care and what motivates their choice.Using respondent-driven sampling (RDS), FWSs were recruited in Durban, South Africa (n = 400), Tete, Mozambique (n = 308), Mombasa, Kenya (n = 400) and Mysore, India (n = 458) and interviewed. RDS-adjusted proportions were estimated by non-parametric bootstrapping, and compared across cities using post-hoc pairwise comparison tests.Across cities, FSWs most commonly sought care for the majority of HIV/SRH services at public health facilities, most especially in Durban (ranging from 65% for condoms to 97% for HIV care). Services specifically targeting FSWs only had a high coverage in Mysore for STI care (89%) and HIV testing (79%). Private-for-profit clinics were important providers in Mombasa (ranging from 17% for STI care and HIV testing to 43% for HIV care), but not in the other cities. The most important reason for the choice of care provider in Durban and Mombasa was proximity, in Tete 'where they always go', and in Mysore cost of care. Where available, clinics specifically targeting FSWs were more often chosen because of shorter waiting times, perceived higher quality of care, more privacy and friendlier personnel.The place where care is sought for HIV/SRH services differs substantially between cities. Targeted services have limited coverage in the African cities compared to Mysore. Convenience appears more important for choosing the place of care than aspects of quality of care. The best model to improve access, linking targeted interventions with general health services, will need to be tailored to the specific context of each city.
- Published
- 2016
- Full Text
- View/download PDF
22. A cell-based high-throughput screen for novel chemical inducers of fetal hemoglobin for treatment of hemoglobinopathies.
- Author
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Kenneth R Peterson, Flávia C Costa, Halyna Fedosyuk, Renee Y Neades, Allen M Chazelle, Lesya Zelenchuk, Andrea H Fonteles, Parmita Dalal, Anuradha Roy, Rathnam Chaguturu, Biaoru Li, and Betty S Pace
- Subjects
Medicine ,Science - Abstract
Decades of research have established that the most effective treatment for sickle cell disease (SCD) is increased fetal hemoglobin (HbF). Identification of a drug specific for inducing γ-globin expression in pediatric and adult patients, with minimal off-target effects, continues to be an elusive goal. One hurdle has been an assay amenable to a high-throughput screen (HTS) of chemicals that displays a robust γ-globin off-on switch to identify potential lead compounds. Assay systems developed in our labs to understand the mechanisms underlying the γ- to β-globin gene expression switch during development has allowed us to generate a cell-based assay that was adapted for a HTS of 121,035 compounds. Using chemical inducer of dimerization (CID)-dependent bone marrow cells (BMCs) derived from human γ-globin promoter-firefly luciferase β-globin promoter-Renilla luciferase β-globin yeast artificial chromosome (γ-luc β-luc β-YAC) transgenic mice, we were able to identify 232 lead chemical compounds that induced γ-globin 2-fold or higher, with minimal or no β-globin induction, minimal cytotoxicity and that did not directly influence the luciferase enzyme. Secondary assays in CID-dependent wild-type β-YAC BMCs and human primary erythroid progenitor cells confirmed the induction profiles of seven of the 232 hits that were cherry-picked for further analysis.
- Published
- 2014
- Full Text
- View/download PDF
23. Moving average and autoregressive correlation structures under multivariate skew normality.
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Timothy Opheim and Anuradha Roy
- Published
- 2023
- Full Text
- View/download PDF
24. Light-Harvesting Antenna Complex and Its Role in Environmental Stress
- Author
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Choudhury, Sudip, primary, Goswami, Sunayana, additional, Choudhury, Anuradha Roy, additional, and Paul, Saurav, additional
- Published
- 2022
- Full Text
- View/download PDF
25. Linear models for multivariate repeated measures data with block exchangeable covariance structure.
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Timothy Opheim and Anuradha Roy
- Published
- 2021
- Full Text
- View/download PDF
26. Genetic Relationship and Selection Indices of Nine Irradiated Quantitative Traits of F1 Materials in lentils (Lens Culinaris Medic.)
- Author
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Anil Chandra Deb and Anuradha Roy Chowdhury
- Subjects
General Medicine - Abstract
F1 materials of half-diallel crosses for nine characters in lentils were studied for correlation, path-coefficient, and selection index. The phenotypic component of variation (σ2p) was higher than the genotypic component of variation (σ2g). The highest σ2g and σ2pwere obtained for CAMF. Investigation showed that genotypic correlations (rg) were higher than the respective phenotypic correlations (rp) for most of the characters. SWPP showed a highly significant and positive correlation coefficient with other characters except for the NPBFF at the genotypic level and except NPBFF and DF at the phenotypic level. The highest significant and positive genotypic correlation coefficient was recorded for NSBFF with PdWPP at the genotypic level and PdWPP with SWPP at the phenotypic level. PdWPP had the highest positive direct effect on SWPP at both genotypic and phenotypic levels. The maximum expected genetic gain of 4603.196% was found when NPBFF and RW were included in the index. These two characters a had high correlation coefficient with most of the characters studied as well as a direct effect at the genotypic level may be considered as primary yield components.
- Published
- 2022
- Full Text
- View/download PDF
27. Role of kshara (an alkali preparation) in wound healing with special reference to cervical erosion
- Author
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null Pragati Saxena, null Anuradha Roy, and null Binay Sen
- Abstract
Cervical erosion is caused by the replacement of the stratified squamous epithelium of the ectocervix with the endocervical columnar epithelium. In Ayurvedic classics, it can be co-related to garbhashayagrivagatavrana. Its management mainly includes destruction of overgrown epithelium by different techniques has its own limitations and side effects. Further observing its prevalence there is a requirement for a treatment modality which is more efficient and cost-effective. Kshara which possesses lekhana (scrapping), vrana-shodhana (wound cleansing), and ropana (wound healing) properties as described in Ayurveda, provides a scientific background of the therapeutic application in the management. Different review works revealed the potential use of kshara on wound healing due to its alkalinity which maintain the body pH within the normal range and thus maintains different cellular and extracellular function. Therefore, kshara is found to be an important preparation that has been investigated for its gynecological uses by different scholars.
- Published
- 2022
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28. VatajaYonivyapada (gynecological condition): Scope in Ayurveda
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null Monisha VM and null Anuradha Roy
- Abstract
Introduction: Vatajayonivyapada having signs and symptoms such as pain along with abnormalities in menstrual bleeding matches with many of the gynaecologicaldisorders in women of reproductive age group. It hampers their day-to-day chores and disturbing their interpersonal relationship and most importantly compromises quality of life. Therefore, an instant relief of symptoms is required along with an overall improvement in the general condition of those women.In such conditions, a better alterative non-hormonal Ayurvedic management is planned. Ksheerapaka(medicated milk preparations) of Rasna, Gokshuraand Vasa having vedanahara (analgesic effect) is used in the study. Objective: In this research work our objective was to evaluate the therapeutic efficacy of oral RasnadiKsheerapaka in Vatajayonivyapada. Materials and method: Total 30 patients within 20-40 years of ageirrespective of the marital status having classical symptoms of Vatajayonivyapada have been selected randomly from Prasuti Tantra OPD, S.S. Hospital, BHU, Varanasi. After detailed history, complete examination and investigations patients selected for the study on the basis of selection criteria.Patientswere treatedwith Rasnadiksheerapaka50ml orally once in a day for total duration of 45 days. Study was assessed after completion of follow-up period. Result: Among the 28 cases, 5 patients became cured and 6 remained without any improvement and all the remaining 17 patients have got mild to marked improvement in the signs and symptoms. Conclusion: It is concluded that Rasnadiksheerapakahas got the therapeutic efficacy in the Vatajayonivyapadamanagement. Also helps in improving the overall health status and quality of life in such women.
- Published
- 2022
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29. Management Protocols of Bleeding Disorders in Implant Dentistry: A Narrative Review
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Manoj Shetty, Nivya John, Anuradha Roy, Karishma Ashok, and Tarona Azem Subba
- Subjects
General Dentistry - Published
- 2022
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30. Small-Molecule Disruptors of Mutant Huntingtin–Calmodulin Protein–Protein Interaction Attenuate Deleterious Effects of Mutant Huntingtin
- Author
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Khushboo Kapadia, Ashley E. Trojniak, Kenneth B. Guzmán Rodríguez, Nicholas J. Klus, Coral Huntley, Peter McDonald, Anuradha Roy, Kevin J. Frankowski, Jeffrey Aubé, and Nancy A. Muma
- Subjects
Huntingtin Protein ,Mice ,Huntington Disease ,Calmodulin ,Physiology ,Cognitive Neuroscience ,Animals ,Calcium ,Nerve Tissue Proteins ,Neurodegenerative Diseases ,Cell Biology ,General Medicine ,Biochemistry - Abstract
Huntington's disease is a progressive and lethal neurodegenerative disease caused by an increased CAG repeat mutation in exon 1 of the huntingtin gene (mutant huntingtin). Current drug treatments provide only limited symptomatic relief without impacting disease progression. Previous studies in our lab and others identified the abnormal binding of mutant huntingtin protein with calmodulin, a key regulator of calcium signaling. Disrupting the abnormal binding of mutant huntingtin to calmodulin reduces perturbations caused by mutant huntingtin in cell and mouse models of Huntington's disease and importantly normalizes receptor-stimulated calcium release. Using a series of high-throughput
- Published
- 2022
- Full Text
- View/download PDF
31. Inverse of the covariance matrix of an MA(2) process.
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Timothy Opheim and Anuradha Roy
- Published
- 2021
- Full Text
- View/download PDF
32. Optimal estimation for doubly multivariate data in blocked compound symmetric covariance structure.
- Author
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Anuradha Roy, Roman Zmyslony, Miguel Fonseca, and Ricardo Leiva
- Published
- 2016
- Full Text
- View/download PDF
33. Score test for a separable covariance structure with the first component as compound symmetric correlation matrix.
- Author
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Katarzyna Filipiak, Daniel Klein, and Anuradha Roy
- Published
- 2016
- Full Text
- View/download PDF
34. ASSESSMENT OF GLYCOSAMINOGLYCAN CONTENT IN BONE USING RAMAN SPECTROSCOPY
- Author
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Savannah Heath, Yan Han, Rui Hua, Anuradha Roy, Jean Jiang, Jeffry S. Nyman, and Xiaodu Wang
- Subjects
Histology ,Physiology ,Endocrinology, Diabetes and Metabolism ,Article - Abstract
Glycosaminoglycans (GAGs) are responsible for preserving bone tissue toughness as well as regulating collagen formation and mineralization in the extracellular matrix. However, current methods for characterization of GAGs in bone are destructive, thus unable to capture in situ changes or differences in GAGs between experimental groups. As an alternative, Raman spectroscopy is a non-destructive method and can detect concurrent changes in GAGs and other bone constituents. In this study, we hypothesized that the two most prominent Raman peaks of sulfated GAGs (at ~1066 cm(−1) and at ~1378 cm(−1)) could be used to detect differences in GAGs content of bone. To test this hypothesis, three experimental models were utilized: an in vitro model (enzymatic removal of GAGs from human cadaver bone), an in vivo mouse model (biglycan KO vs. WT), and an ex vivo aging model (comparing cadaveric bone samples from young and old donors). All Raman measurements were compared to Alcian blue measurements to confirm the validity of Raman spectroscopy in detecting GAGs changes in bone. Irrespective of different models, it was found that the ~1378cm(−1) peak in Raman spectra of bone was uniquely sensitive to changes of GAGs content in bone when normalized with respect to the phosphate phase (~960cm(−1)); i.e., 1378cm(−1)/960cm(−1) (peak intensity ratio) or 1370-1385cm(−1)/930-980cm(−1) (integrated peak area ratio). In contrast, the 1070cm(−1) peak, which includes another major peak of GAGs (1066cm(−1)), seemed to be compromised to detect changes of GAGs in bone due to concurrent changes of carbonate (CO(3)) in the similar peak range. This study validates the ability of Raman spectroscopy to detect in situ treatment-, genotype-, and age-related changes in GAG levels of bone matrix.
- Published
- 2023
35. USING THE CONCEPT OF THIRD SPACES TO TEACH UNDER-SERVED CHILDREN THE CRITICAL SKILLS NEEDED FOR UPWARD SOCIO-ECONOMIC MOBILITY
- Author
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Anuradha Roy Chowdhury, Prasad Narasimhan, and Shivani Prasad
- Published
- 2023
- Full Text
- View/download PDF
36. Testing the equality of mean vectors for paired doubly multivariate observations in blocked compound symmetric covariance matrix setup.
- Author
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Anuradha Roy, Ricardo Leiva, Ivan Zezula, and Daniel Klein
- Published
- 2015
- Full Text
- View/download PDF
37. Light-Harvesting Antenna Complex and Its Role in Environmental Stress
- Author
-
Sudip Choudhury, Sunayana Goswami, Anuradha Roy Choudhury, and Saurav Paul
- Published
- 2022
- Full Text
- View/download PDF
38. Doubly multivariate linear models with block exchangeable distributed errors and site-dependent covariates
- Author
-
Anuradha Roy and Timothy Opheim
- Subjects
Statistics and Probability ,Score test ,Multivariate statistics ,Mathematics::General Mathematics ,Computer Science::Neural and Evolutionary Computation ,Monte Carlo method ,Linear model ,Articles ,Computer Science::Artificial Intelligence ,Block (telecommunications) ,Statistics ,Covariate ,Physics::Atomic Physics ,Statistics, Probability and Uncertainty ,Statistic ,Statistical hypothesis testing ,Mathematics - Abstract
The problem of testing the intercept and slope parameters of doubly multivariate linear models with site-dependent covariates using Rao's score test (RST) is studied. The RST statistic is developed for a block exchangeable covariance structure on the error vector under the assumption of multivariate normality. We compare our developed RST statistic with the likelihood ratio test (LRT) statistic. Monte Carlo simulations indicate that the RST statistic is much more accurate than its counterpart LRT statistic and it takes significantly less computation time than the LRT statistic. The proposed method is illustrated with an example of multiple response variables measured on multiple trees in a single plot in an agricultural study.
- Published
- 2022
39. Genetic Relationship and Selection Indices of Nine Irradiated Quantitative Traits of F1 Materials in lentils (Lens Culinaris Medic.)
- Author
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Deb, Anil Chandra, primary and Chowdhury, Anuradha Roy, additional
- Published
- 2022
- Full Text
- View/download PDF
40. Web Site Metadata.
- Author
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Erik Wilde and Anuradha Roy
- Published
- 2009
- Full Text
- View/download PDF
41. An Application of Linear Mixed Effects Model to Steganography Detection.
- Author
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Mei-Ching Chen, Anuradha Roy, Benjamin M. Rodriguez, Sos S. Agaian, and C. L. Philip Chen
- Published
- 2009
- Full Text
- View/download PDF
42. Disrupting interferon-alpha and NF-kappaB crosstalk suppresses IFITM1 expression attenuating triple-negative breast cancer progression
- Author
-
Eric S. Geanes, Sean M. Holloran, Anuradha Roy, Olivia K. Provance, Sumedha Gunewardena, Christy R. Hagan, Scott Weir, Asona Lui, and Joan Lewis-Wambi
- Subjects
Adult ,0301 basic medicine ,Cancer Research ,Down-Regulation ,Alpha interferon ,Triple Negative Breast Neoplasms ,Biology ,Article ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Downregulation and upregulation ,Cell Movement ,In vivo ,Interferon ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Parthenolide ,Triple-negative breast cancer ,Aged ,Cell Proliferation ,Tissue microarray ,NF-kappa B ,Interferon-alpha ,Middle Aged ,Antigens, Differentiation ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,Oncology ,chemistry ,Tumor progression ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Signal Transduction ,medicine.drug - Abstract
Overexpression of interferon induced transmembrane protein-1 (IFITM1) enhances tumor progression in multiple cancers, but its role in triple-negative breast cancer (TNBC) is unknown. Here, we explore the functional significance and regulation of IFITM1 in TNBC and strategies to target its expression. Immunohistochemistry staining of a tissue microarray demonstrates that IFITM1 is overexpressed in TNBC samples which is confirmed by TCGA analysis. Targeting IFITM1 by siRNA or CRISPR/Cas9 in TNBC cell lines significantly inhibits proliferation, colony formation, and wound healing in vitro. Orthotopic mammary fat pad and mammary intraductal studies reveal that loss of IFITM1 reduces TNBC tumor growth and invasion in vivo. RNA-seq analysis of IFITM1/KO cells reveals significant downregulation of several genes involved in proliferation, migration, and invasion and functional studies identified NF-κB as an important downstream target of IFITM1. Notably, siRNA knockdown of p65 reduces IFITM1 expression and a drug-repurposing screen of FDA approved compounds identified parthenolide, an NFκB inhibitor, as a cytotoxic agent for TNBC and an inhibitor of IFITM1 in vitro and in vivo. Overall, our findings suggest that targeting IFITM1 by suppressing interferon-alpha/NFκB signaling represents a novel therapeutic strategy for TNBC treatment.
- Published
- 2021
- Full Text
- View/download PDF
43. Alternative Splicing: Associating Frequency with Isoforms.
- Author
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Anuradha Roy, Jennifer L. Leopold, and Anne M. Maglia
- Published
- 2007
- Full Text
- View/download PDF
44. Void-Enriched and Highly Strained Porous Au–Ag Nanoalloy as a Bifunctional Electro-Catalyst in Alkaline Direct Alcohol Fuel Cell
- Author
-
Sandip Kumar De, Anuradha Roy, Arpita Nandy, Dulal Senapati, Subrata Mondal, and Sourav Mondal
- Subjects
Alcohol fuel ,Materials science ,Energy Engineering and Power Technology ,chemistry.chemical_compound ,Chemical engineering ,chemistry ,Void (composites) ,Materials Chemistry ,Electrochemistry ,Chemical Engineering (miscellaneous) ,Electrical and Electronic Engineering ,Porosity ,Bifunctional ,Electro catalyst - Published
- 2021
- Full Text
- View/download PDF
45. Abstract 5334: Targeting the KIF15-TPX2 PPI to overcome KIF11 inhibitor resistance in epithelial ovarian cancer
- Author
-
Benjamin K. Gibbs, Justin T. Douglas, Rebecca J. Wates, Peter R. McDonald, Amy M. Whitaker, Cornelius N. Ndi, Harsh B. Pathak, Laurie A. Harned, Sarah A. Neuenswander, Melinda A. Broward, Bret D. Freudenthal, Anuradha Roy, Frank J. Schoenen, and Andrew K. Godwin
- Subjects
Cancer Research ,Oncology - Abstract
Most cases of epithelial ovarian cancer (EOC) exhibit extensive molecular heterogeneity, presenting challenges in developing targeted therapies. Despite extensive efforts and incremental successes in developing targeted drugs and immunotherapies for other cancers, chemotherapies continue to be the most used treatment of ovarian cancer. Although seemingly simplistic, identification of drugs targeting cellular machinery independent of genomic and genetic status continues to be a strong clinical need. Previously, we performed an RNAi-based screen of the druggable genome across a diverse histological panel of EOC cell line representing both platinum-sensitive and -resistant tumors (PMID: 23056589). This screen elucidated KIF11 as essential in maintaining EOC cell viability. KIF11, a mitotic spindle assembly motor protein, has been targeted clinically. Although drugs are well tolerated, potent, and specific, the objective response rates to KIF11 inhibitors in clinical trials were commonly less than 10%. The efficacy of KIF11 inhibitors is blunted via a compensatory motor kinesin, KIF15. The overexpression of KIF15 has been shown to compensate for absent KIF11 in the formation of the bipolar spindle apparatus during mitosis. Silencing KIF15 significantly sensitizes cells to KIF11 inhibitors and resensitizes resistant cells to KIF11 inhibitors. We developed a high throughput screening approach using Alpha technology to identify compounds that inhibit the protein-protein interaction (PPI) between KIF15 and TPX2, a unique approach to inhibiting KIF15 from previous efforts. Of the nearly 200,000 compounds screened, 177 compounds were selected to be further characterized based on assay performance and chemical properties. These compounds were screened for TPX2 or KIF15 binding by STD-NMR and waterLOGSY. Three compounds across two chemotypes were confirmed to bind KIF15. No compounds were found to bind TPX2. Additionally, 168 of the 177 compounds were screened for drug synergism in vitro. The synergism assay yielded 32 strongly and 8 weakly synergistic hits. The lead compound in each of the two chemotypes revealed by NMR were classified as strongly synergistic (max. bliss score of 8.0 and 29.9). To expand the potential lead compounds identified for further development, an antibody-free cellular thermal shift assay (CETSA) is being completed with 168 compounds. Preliminarily, CETSA has shown that the two lead compounds significantly stabilize KIF15 (ΔTm = 5.6 °C and 9.6 °C). These two lead compounds behaved in a dose-dependent manner in the AlphaScreen (IC50= 2 µM and 6 µM), a favorable characteristic for further development. To date, two chemotypes have been identified as KIF15 inhibitors uniquely targeting the KIF15-TPX2 PPI. The data indicates KIF15 inhibition in combination with KIF11 inhibition is synergistic, thus demonstrating a potential novel treatment approach for people with EOCs. Citation Format: Benjamin K. Gibbs, Justin T. Douglas, Rebecca J. Wates, Peter R. McDonald, Amy M. Whitaker, Cornelius N. Ndi, Harsh B. Pathak, Laurie A. Harned, Sarah A. Neuenswander, Melinda A. Broward, Bret D. Freudenthal, Anuradha Roy, Frank J. Schoenen, Andrew K. Godwin. Targeting the KIF15-TPX2 PPI to overcome KIF11 inhibitor resistance in epithelial ovarian cancer. [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 5334.
- Published
- 2023
- Full Text
- View/download PDF
46. Abstract 1706: A non-canonical MiT/TFE-dependent NRF2 program is a druggable vulnerability in multiple cancer types
- Author
-
Xinbo Luo, Bart Lutterbach, Priya Pancholi, Yeon Sook Choi, Xiao Liu, Phillip Munson, Saqib Faisal, David A. Whipple, Robert A. Smith, Warren S. Weiner, David K. Johnson, Myriam Boukhali, Nicole S. Persky, Matthew G. Rees, Shunsuke Kitajima, David Barbie, Anuradha Roy, Michael Baltezor, Lian Rajewski, William McGuinness, John Haslam, Ananthan Sadagopan, Charles H. Yoon, Cory M. Johannessen, Christine G. Lian, Jason L. Hornick, Srinivas R. Viswanathan, David Liu, Vicki Nienaber, Wilhelm Haas, Frank J. Schoenen, David E. Fisher, and Rizwan Haq
- Subjects
Cancer Research ,Oncology - Abstract
The transcription factor NRF2 is a master regulator of cellular responses to oxidative stress, contributing to the pathogenesis of autoimmunity, metabolic disorders, and neurodegeneration. Somatic alterations in the NRF2 pathway also contribute to the growth and metastasis of many cancer types including ~30% of lung cancers. Still, the activation of NRF2 has frequently been observed in the absence of known genomic alterations, indicating that other pathways may drive its dysregulation. Further, approaches to target NRF2 pharmacologically have remained elusive. Here, we conducted a screen that identified a small molecule, ML329, exhibiting selective cytotoxicity in cells exhibiting NRF2 dependency and synthetic lethality to NRF2 pathway mutations across 489 cell lines. Surprisingly, we find that melanomas—which rarely have somatic mutations in the NRF2 pathway—were commonly sensitive to ML329. Melanomas were seen to exhibit NRF2-dependent metabolomic and transcriptional programs through the transcriptional activation of the adaptor protein p62/SQSTM1 by the melanocyte master regulator and oncoprotein MITF. This pathway was found to be conserved among all cancers characterized by genomic alterations of the MiT family (MITF, TFEB and TFE3) including subsets of renal cell carcinomas, pediatric sarcomas, and uveal and cutaneous melanomas. Our data identify a previously unrecognized, non-canonical mechanism of NRF2 activation by the MiT family, clarifying the regulation of NRF2 in pathologic and physiologic contexts. Pharmacologic inhibition of NRF2 could be valuable in the treatment of conditions with MITF family dysregulation. Citation Format: Xinbo Luo, Bart Lutterbach, Priya Pancholi, Yeon Sook Choi, Xiao Liu, Phillip Munson, Saqib Faisal, David A. Whipple, Robert A. Smith, Warren S. Weiner, David K. Johnson, Myriam Boukhali, Nicole S. Persky, Matthew G. Rees, Shunsuke Kitajima, David Barbie, Anuradha Roy, Michael Baltezor, Lian Rajewski, William McGuinness, John Haslam, Ananthan Sadagopan, Charles H. Yoon, Cory M. Johannessen, Christine G. Lian, Jason L. Hornick, Srinivas R. Viswanathan, David Liu, Vicki Nienaber, Wilhelm Haas, Frank J. Schoenen, David E. Fisher, Rizwan Haq. A non-canonical MiT/TFE-dependent NRF2 program is a druggable vulnerability in multiple cancer types [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 1706.
- Published
- 2023
- Full Text
- View/download PDF
47. Resultant inward imbalanced seeding force (RIISF)-induced concave gold nanostar (CAuNS) for non-enzymatic electrocatalytic detection of serotonin and Kynurenine in human serum
- Author
-
Anuradha Roy, Sandip Kumar De, Suman Dey, Maireyee Bhattacharya, Biswarup Satpati, and Dulal Senapati
- Subjects
Environmental Chemistry ,Biochemistry ,Spectroscopy ,Analytical Chemistry - Published
- 2023
- Full Text
- View/download PDF
48. A high-content AlphaScreen™ identifies E6-specific small molecule inhibitors as potential therapeutics for HPV+ head and neck squamous cell carcinomas
- Author
-
Penelope J. Duerksen-Hughes, Lennox Chitsike, Chung-Hsiang Yuan, Kristopher E. Boyle, and Anuradha Roy
- Subjects
0301 basic medicine ,Cell growth ,Cell ,Biology ,Caspase 8 ,medicine.disease ,Head and neck squamous-cell carcinoma ,Phenotype ,law.invention ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine.anatomical_structure ,Oncology ,Cell culture ,law ,030220 oncology & carcinogenesis ,medicine ,Cancer research ,Structure–activity relationship ,Suppressor - Abstract
The incidence of human papillomavirus-positive head and neck squamous cell carcinoma (HPV+-HNSCC) has increased dramatically over the past decades due to an increase in infection of the oral mucosa by HPV. The etiology of HPV+-HNSCC is linked to expression of the HPV oncoprotein, E6, which influences tumor formation, growth and survival. E6 effects this oncogenic phenotype in part through inhibitory protein-protein interactions (PPIs) and accelerated degradation of proteins with tumor suppressor properties, such as p53 and caspase 8. Interfering with the binding between E6 and its cellular partners may therefore represent a reasonable pharmacological intervention in HPV+ tumors. In this study, we probed a small-molecule library using AlphaScreen™ technology to discover novel E6 inhibitors. Following a cascade of screens we identified and prioritized one hit compound. Structure activity relationship (SAR) studies of this lead uncovered an analog, 30-hydroxygambogic acid (GA-OH), that displayed improved activity. Further testing of this analog in a panel of HPV+ and HPV- cell lines showed good potency and a large window of selectivity as demonstrated by apoptosis induction and significant inhibition of cell growth, cell survival in HPV+ cells. In summary, GA-OH may serve as a starting point for the development of potent E6-specific inhibitors.
- Published
- 2021
- Full Text
- View/download PDF
49. 'My Surgical Success': Feasibility and Impact of a Single-Session Digital Behavioral Pain Medicine Intervention on Pain Intensity, Pain Catastrophizing, and Time to Opioid Cessation After Orthopedic Trauma Surgery-A Randomized Trial
- Author
-
Maisa S. Ziadni, Dokyoung S. You, Ryan Keane, Brett Salazar, Sam Jaros, Jesmin Ram, Anuradha Roy, Natalie Tanner, Vafi Salmasi, Michael Gardner, and Beth D. Darnall
- Subjects
Analgesics, Opioid ,Male ,Analgesics ,Pain, Postoperative ,Anesthesiology and Pain Medicine ,Catastrophization ,Feasibility Studies ,Humans ,Female ,Pain Measurement - Abstract
Behavioral pain treatments may improve postsurgical analgesia and recovery; however, effective and scalable options are not widely available. This study tested a digital perioperative behavioral medicine intervention in orthopedic trauma surgery patients for feasibility and efficacy for reducing pain intensity, pain catastrophizing, and opioid cessation up to 3 months after surgery.A randomized controlled clinical trial was conducted at an orthopedic trauma surgery unit at a major academic hospital to compare a digital behavioral pain management intervention ("My Surgical Success" [MSS]) to a digital general health education (HE) intervention (HE; no pain management skills). The enrolled sample included 133 patients; 84 patients were randomized (MSS, n = 37; HE, n = 47) and completed study procedures. Most patients received their assigned intervention within 3 days of surgery (85%). The sample was predominantly male (61.5%), White (61.9%), and partnered (65.5%), with at least a bachelor's degree (69.0%). Outcomes were collected at 1-3 months after intervention through self-report e-surveys and electronic medical record review; an intention-to-treat analytic framework was applied. Feasibility was dually determined by the proportion of patients engaging in their assigned treatment and an application of an 80% threshold for patient-reported acceptability. We hypothesized that MSS would result in greater reductions in pain intensity and pain catastrophizing after surgery and earlier opioid cessation compared to the digital HE control group.The engagement rate with assigned interventions was 63% and exceeded commonly reported rates for fully automated Internet-based e-health interventions. Feasibility was demonstrated for the MSS engagers, with80% reporting treatment acceptability. Overall, both groups improved in the postsurgical months across all study variables. A significant interaction effect was found for treatment group over time on pain intensity, such that the MSS group evidenced greater absolute reductions in pain intensity after surgery and up to 3 months later (treatment × time fixed effects; F [215] = 5.23; P = .024). No statistically significant between-group differences were observed for time to opioid cessation or for reductions in pain catastrophizing ( F [215] = 0.20; P = .653), although the study sample notably had subclinical baseline pain catastrophizing scores (M = 14.10; 95% confidence interval, 11.70-16.49).Study findings revealed that a fully automated behavioral pain management skills intervention (MSS) may be useful for motivated orthopedic trauma surgery patients and reduce postsurgical pain up to 3 months. MSS was not associated with reduced time to opioid cessation compared to the HE control intervention.
- Published
- 2022
50. Linear discrimination for three-level multivariate data with a separable additive mean vector and a doubly exchangeable covariance structure.
- Author
-
Ricardo Leiva and Anuradha Roy
- Published
- 2012
- Full Text
- View/download PDF
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