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Summary: A recurring trend in evidence scrutinized over the past few decades is that disease outbreaks will become more frequent, intense, and widespread on land and in water, due to climate change. Pathogens and the diseases they inflict represent a major constraint on seafood production and yield, and by extension, food security. The risk(s) for fish and shellfish from disease is a function of pathogen characteristics, biological species identity, and the ambient environmental conditions. A changing climate can adversely influence the host and environment, while augmenting pathogen characteristics simultaneously, thereby favoring disease outbreaks. Herein, we use a series of case studies covering some of the world’s most cultured aquatic species (e.g., salmonids, penaeid shrimp, and oysters), and the pathogens (viral, fungal, bacterial, and parasitic) that afflict them, to illustrate the magnitude of disease-related problems linked to climate change.

Summary: Global warming significantly impacts amphibian populations globally, and modeling helps understand these effects. Here, we used MaxEnt and MigClim models to predict the impact of climate change on habitat suitability for Hoplobatrachus chinensis. Our results indicate that temperature is a key factor affecting H. chinensis distribution. Increasing temperatures positively correlated with habitat suitability, with suitable habitat expanding northward by 2060 while maintaining suitability in the southern parts of the range. We found a 25.18% overlap between the current potential suitable habitat of H. chinensis and agricultural wetlands. Our model indicated that H. chinensis might be able to track shifts in suitable habitats under climate change given a 15 km dispersal ability per generation. Climate change will likely expand suitable habitat for H. chinensis. Our predictions offer important guidance for the conservation of the species, especially for the integrated role of natural and agricultural wetlands such as rice paddies.

Summary: Although diverse microorganisms can remove ammonium and nitrate simultaneously, their metabolic mechanisms are not well understood. Paracoccus denitrificans R-1 showed the maximal NH4+ removal rate 9.94 mg L−1·h−1 and 2.91 mg L−1·h−1 under aerobic and anaerobic conditions, respectively. Analysis of the nitrogen balance calculation and isotope tracing experiment indicated that NH4+ was consumed through assimilation. The maximal NO3− removal rate of strain R-1 was 18.05 and 19.76 mg L−1·h−1 under aerobic and anaerobic conditions, respectively. The stoichiometric consumption ratio of acetate to nitrate was 0.902 and NO3− was reduced to N2 for strain R-1 through 15NO3− isotopic tracing experiment, which indicated a respiratory process coupled with the oxidation of electron donors. Genomic analysis showed that strain R-1 contained genes for ammonium assimilation and denitrification, which effectively promoted each other. These findings provide insights into microbial nitrogen transformation and facilitate the simultaneous removal of NH4+ and NO3− in a single reactor.

Summary: Oyster reefs are hotspots of denitrification mediated removal of dissolved nitrogen (N), however, information on their denitrifier microbiota is scarce. Furthermore, in oyster aquaculture, triploids are often preferred over diploids, yet again, microbiome differences between oyster ploidies are unknown. To address these knowledge gaps, farmed diploid and triploid oysters were collected over an annual growth cycle and analyzed using shotgun metagenomics and quantitative microbial elemental cycling (QMEC) techniques. Regardless of ploidy, Psychrobacter genus was abundant, with positive correlations found for genes of central metabolism, DNA metabolism, and carbohydrate metabolism. MAGs (metagenome-assembled genomes) yielded multiple Psychrobacter genomes harboring norB, narH, narI, and nirK denitrification genes, indicating their functional relevance within the eastern oysters. QMEC analysis indicated the predominance of carbon (C) and nitrogen (N) cycling genes, with no discernable patterns between ploidies. Among the N-cycling genes, the nosZII clade was overrepresented, suggesting its role in the eastern oyster’s N removal processes.

Summary: Spatio-temporal variability of sediment-mediated methane (CH4) production in freshwater lakes causes large uncertainties in predicting global lake CH4 emissions under different climate change and eutrophication scenarios. We conducted extensive sediment incubation experiments to investigate CH4 fluxes in Lake Stechlin, a deep, stratified temperate lake. Our results show contrasting spatial patterns in CH4 fluxes between littoral and profundal sites. The littoral sediments, ∼33% of the total sediment surface area, contributed ∼86.9% of the annual CH4 flux at the sediment-water interface. Together with sediment organic carbon quality, seasonal stratification is responsible for the striking spatial difference in sediment CH4 production between littoral and profundal zones owing to more sensitive CH4 production than oxidation to warming. While profundal sediments produce a relatively small amount of CH4, its production increases markedly as anoxia spreads in late summer. Our measurements indicate that future lake CH4 emissions will increase due to climate warming and concomitant hypoxia/anoxia.

Summary: Eutrophication by human-derived nutrient enrichment is a major threat to mangroves, impacting productivity, ecological functions, resilience, and ecosystem services. Natural mangrove nutrient enrichment processes, however, remain largely uninvestigated. Mobile consumers such as seabirds are important vectors of cross-ecosystem nutrient subsidies to islands but how they influence mangrove ecosystems is poorly known. We assessed the contribution, uptake, cycling, and transfer of nutrients from seabird colonies in remote mangrove systems free of human stressors. We found that nutrients from seabird guano enrich mangrove plants, reduce nutrient limitations, enhance mangrove invertebrate food webs, and are exported to nearby coastal habitats through tidal flow. We show that seabird nutrient subsidies in mangroves can be substantial, improving the nutrient status and health of mangroves and adjacent coastal habitats. Conserving mobile consumers, such as seabirds, is therefore vital to preserve and enhance their role in mangrove productivity, resilience, and provision of diverse functions and services.

Summary: The need to enhance nutrient production from tropical ecosystems to feed the poor could potentially create a new framework for fisheries science and management. Early recommendations have included targeting small fishes and increasing the species richness of fish catches, which could represent a departure from more traditional approaches such as biomass-based management. To test these recommendations, we compared the outcomes of biomass-based management with hypothesized factors influencing nutrient density in nearshore artisanal fish catches in the Western Indian Ocean. We found that enhancing nutrient production depends primarily on achieving biomass-based targets. Catches dominated by low- and mid-trophic level species with smaller body sizes and faster turnover were associated with modest increases in nutrient densities, but the variability in nutrient density was small relative to human nutritional requirements. Therefore, tropical fishery management should focus on restoring biomass to achieve maximum yields and sustainability, particularly for herbivorous fishes.

Summary: Mangrove wetlands are an important component of blue carbon (C) ecosystems, although the anthropogenic impact on organic C accumulation rate (OCAR) in mangrove wetlands is not yet clear. Three sediment cores were collected from Zhanjiang Gaoqiao Mangrove Reserve in Southern China, dated by 210Pb and 137Cs, and physico-chemical parameters measured. Results show that the OCARs in mangroves and grasslands have significantly increased by 4.4 and 1.3 times, respectively, since 1950, which is consistent with the transformation of organic C sources and the increase of sedimentation rate. This increment is due to increased soil erosion and nutrient enrichment caused by land use change and the discharge of fertilizer runoff and aquaculture wastewater. This study provides clear evidence for understanding the changes in organic C accumulation processes during the Anthropocene and is conducive to promoting the realization of C peak and neutrality targets.

Summary: Rapid genetic selection is critical for allowing natural populations to adapt to different thermal environments such as those that occur across intertidal microhabitats with high degrees of thermal heterogeneity. To address the question of how thermal regimes influence selection and adaptation in the intertidal black mussel Mytilisepta virgata, we continuously recorded environmental temperatures in both tidal pools and emergent rock microhabitats and then assessed genetic differentiation, gene expression patterns, RNA editing level, and cardiac performance. Our results showed that the subpopulations in the tidal pool and on emergent rocks had different genetic structures and exhibited different physiological and molecular responses to high-temperature stress. These results indicate that environmental heterogeneity across microhabitats is important for driving genetic differentiation and shed light on the importance of post-settlement selection for adaptively modifying the genetic composition and thermal responses of these intertidal mussels.

Summary: Knowledge about the impact of different dissolved oxygen (DO) on the composition and function of gut bacteria of aquatic insects is largely unknown. Herein, we constructed freshwater environments with different DOs (hypoxia: 2.50 ± 0.50, normoxia: 7.00 ± 0.50, and hyperoxia: 13.00 ± 0.50 mg/L) where aquatic firefly Aquatica leii larvae lived for three months. Their gut flora was analyzed using the combination of 16S rRNA amplicon sequencing and metagenomics. The results showed no difference in alpha diversity of the gut flora between A. leii inhabiting various DOs. However, the relative abundance of several bacterial lineages presented significant changes, such as Pseudomonas. In addition, bacterial genes with an altered relative abundance in response to various DOs were primarily related to metabolism. The alteration of these functions correlated with the DO change. This is the first to uncover structure of gut flora under various DOs in aquatic insect larvae.

Summary: Trade restrictions for endangered elasmobranch species exist to disincentivise their exploitation and curb their declines. However, trade monitoring is challenging due to product variety and the complexity of import/export routes. We investigate the use of a portable, universal, DNA-based tool which would greatly facilitate in-situ monitoring. We collected shark and ray samples across the Island of Java, Indonesia, and selected 28 commonly encountered species (including 22 CITES-listed species) to test a recently developed real-time PCR single-assay originally developed for screening bony fish. In the absence of a bespoke elasmobranch identification online platform in the original FASTFISH-ID model, we employed a deep learning algorithm to recognize species based on DNA melt-curve signatures. By combining visual and machine-learning assignment methods, we distinguished 25/28 species, 20 of which were CITES-listed. With further refinement, this method can improve monitoring of the elasmobranch trade worldwide, without a lab or species-specific assays.

Summary: Marine biofouling causes huge economic losses to the marine industry every year. Albofungin is a potential antifoulant showing strong anti-macrofouling activities against larval settlement of major fouling organisms. In the present study, directed RNA-seq and proteomic analyses were used to investigate changes in the transcriptome and proteome of a major fouling barnacle Amphibalanus amphitrite cyprids in response to albofungin treatment. Results showed that albofungin treatment remarkably upregulated the metabolism of xenobiotics by the cytochrome P450 pathway to discharge the compound and downregulated energy metabolic processes. Intriguingly, immunostaining and whole-mount in situ hybridization (WISH) revealed the spatial expression patterns of selected differentially expressed genes (glutathione S-transferase [GST], nitric oxide synthase [NOS], and calmodulin [CaM]) distributed in the thorax and antennule of A. amphitrite. Our study provides new insights into the mechanism of albofungin in interrupting the larval settlement of A. amphitrite and suggests its potential application as an antifouling agent in marine environments.

Summary: Mesophotic reefs have been proposed as climate change refugia but are not synonymous ecosystems with shallow reefs and remain exposed to anthropogenic impacts. Planulae from the reef-building coral Stylophora pistillata, Gulf of Aqaba, from 5- and 45-m depth were tested ex situ for capacity to settle, grow, and acclimate to reciprocal light conditions. Skeletons were scanned by phase contrast-enhanced micro-CT to study morphology. Deep planulae had reduced volume, smaller diameter on settlement, and greater algal symbiont density. Light conditions did not have significant impact on settlement or mortality rates. Photosynthetic acclimation of algal symbionts was evident within 21–35 days after settlement but growth rate and polyp development were slower for individuals translocated away from their parental origin compared to controls. Though our data reveal rapid symbiont acclimation, reduced growth rates and limited capacity for skeletal modification likely limit the potential for mesophotic larvae to settle on shallow reefs.

Summary: Aquaculture has great potential in nourishing the global growing population, while such staggering yields are coupled with environmental pollution. Rice-crayfish co-culture models (RCFP) have been widely adopted in China due to their eco-friendliness. However, little is known about RCFP’s microbiome pattern, which hinders our understanding of its sustainability. This study has conducted metagenomic analysis across aquaculture models and habitats, which revealed aquaculture model-specific biogeochemical cycling pattern (e.g., nitrogen (N), sulfur (S), and carbon (C)): RCFP is advantageous in N-assimilation, N-contamination, and S-pollutants removal, while non-RCFP features N denitrification process and higher S metabolism ability, producing several hazardous pollutants in non-RCFP (e.g., nitric oxide, nitrogen monoxide, and sulfide). Moreover, RCFP has greater capacity for carbohydrate enzyme metabolism compared with non-RCFP in environmental habitats, but not in crayfish gut. Collectively, RCFP plays an indispensable role in balancing aquaculture productivity and environmental protection, which might be applied to the blue transformation of aquaculture.

Summary: The manufacturing and consumption of plastic products have steadily increased over the past decades due to rising global demand, resulting not only in the depletion of petroleum resources but also increased environmental pollution due to the non-biodegradable nature of conventional plastics. Moreover, despite being introduced into the market as an alternative to conventional petroleum-based plastics, biobased plastics are mainly manufactured from agricultural crop-based sources, which has negative impacts on the environment and the livelihoods of people. Marine-derived bioplastics are becoming a promising and cost-effective solution to the rising demand for plastic products. The physicochemical, biological, and degradation properties of marine-derived bioplastics have made them promising substances for many applications. However, more research is required for their large-scale implementation. Therefore, this review summarizes the raw materials of marine-derived bioplastics such as algae, animals, and microorganisms, as well as their extraction processes and properties. These insights could thus accelerate the production of marine-derived bioplastics as a novel alternative to prevailing bioplastics by taking advantage of marine biomass.

Summary: Outbreaks of coral disease are often associated with global and local stressors like changes in temperature and poor water quality. A severe coral disease outbreak was recorded in the primary reef-building taxa Montipora spp. in a high-latitude lagoon at Norfolk Island following heat stress and pollution events in 2020. Disease signs suggest the occurrence of a Montiporid White Syndrome with four distinct phases and maximum measured tissue loss of 329 mm−2 day−1. In December 2020 and April 2021, 60% of the Montipora community were impacted and disease severity increased by 54% over this period. Spatial patterns in prevalence indicate the disease is associated with exposure to poor water quality in addition to size class of coral colonies. High prevalence levels make this event comparable to some of the most severe coral disease outbreaks recorded to date demonstrating the vulnerability of this system to combined impacts of warming and pollution.

Summary: During low tides, intertidal animals can be exposed to extreme temperatures that can exceed the animals’ thermal limits. Reflectance of solar radiation could be critical to prevent overheating for animals exposed to the sun; however, most studies ignore near-infrared (NIR) wavelengths that comprise approximately half of solar energy. Here, we conduct a phylogenetically controlled analysis to test whether the reflectivity of intertidal gastropod species is associated with solar exposure. Gastropods from exposed microhabitats had greater shell total reflectivity than those from sheltered microhabitats. Dry shells of gastropods from exposed microhabitats had higher NIR reflectivity even after controlling for UV-visible reflectivity, supporting selection for thermal benefits independent of visual benefits. Using thermal imaging, we also demonstrated that gastropods with high shell reflectivity had lower heating rate in natural conditions than those with low shell reflectivity. Together, these studies show that reflectivity can play a crucial role in thermoregulation in extreme environments.

Human economic activities severely threaten freshwater fish biodiversity in different river basins. Trade makes the impact more mysterious and complex and confounds local efforts to protect freshwater biodiversity. To investigate the relationship between trade and freshwater fishes, we developed a river-basin economic transaction model that is applied to mainland China, home to 9% of the world's freshwater fish species. Here, we show that interbasin trade induced by final demand contributes 74% of the threats to China's freshwater fish biodiversity. Economically developed river basins (e.g., the Huaihe River) are the main beneficiaries of interbasin trade at the cost of biodiversity deterioration in economically underdeveloped river basins (e.g., the upper Pearl River), especially when trade occurs between distant basins. Our findings highlight the significance of the shift in governance from administrative divisions to river basins and control measures in different stages of economic supply chains to mitigate freshwater fish biodiversity threats., Competing Interests: The authors declare no competing interests., (© 2024 The Author(s).)

We use molecular analyses, color patterns, and records of distribution of mating pairs to reconstruct the global phylogeography of Alpheus lottini , a complex of cryptic coral-associated snapping shrimp species. Molecular data support the delineation of ancestral clades A, B, and C, and suggest five additional subdivisions within clades A and B. Clades A, B1, B2, and C exhibit color pattern differences and/or evidence of assortative mating, and thus merit species-level recognition. There is no evidence for assortative mating within clades A and B1, with likely reproductive compatibility (i.e., fertile clutches) in areas of sympatry. The clade diversity peaks in the Mariana Islands and the early branching clade C is restricted to the northern periphery of the Central and Western Pacific suggesting a Pacific origin of this group outside of the Coral Triangle. These findings underscore the prevalence of allopatric processes with possible ecological or microallopatric speciation in areas where clades overlap., Competing Interests: All authors had no conflict of interest to declare.

Summary: Hadal ocean biosphere, that is, the deepest part of the world’s oceans, harbors a unique microbial community, suggesting a potential uncovered co-occurring virioplankton assemblage. Herein, we reveal the unique virioplankton assemblages of the Challenger Deep, comprising 95,813 non-redundant viral contigs from the surface to the hadal zone. Almost all of the dominant viral contigs in the hadal zone were unclassified, potentially related to Alteromonadales and Oceanospirillales. 2,586 viral auxiliary metabolic genes from 132 different KEGG orthologous groups were mainly related to the carbon, nitrogen, sulfur, and arsenic metabolism. Lysogenic viral production and integrase genes were augmented in the hadal zone, suggesting the prevalence of viral lysogenic life strategy. Abundant rve genes in the hadal zone, which function as transposase in the caudoviruses, further suggest the prevalence of viral-mediated horizontal gene transfer. This study provides fundamental insights into the virioplankton assemblages of the hadal zone, reinforcing the necessity of incorporating virioplankton into the hadal biogeochemical cycles.

Summary: Growing anthropogenic activities are significantly influencing the environment and especially aquatic ecosystems. Therefore, there is an increasing demand to develop techniques for monitoring and assessing freshwater habitat changes so that interventions can prevent irrevocable damage. We explore an approach for screening the temperature-induced stress experienced by aquatic organisms owing to environmental variations. Luminescent spectra of upconversion [Y2O3: Yb, Er] particles embedded within Caridina multidentata shrimps are measured, while ambient temperature gradient is inducing stress conditions. The inverse linear dependence of the logarithmic ratio of the luminescence intensity provides an effective means for temperature evaluation inside aquatic species in vivo. The measured luminescence shows high photostability on the background of the complete absence of biotissues’ autofluorescence, as well as no obscuration of the luminescence signal from upconversion particles. Current approach of hybrid sensing has a great potential for monitoring variations in aquatic ecosystems driven by climate changes and pollution.

Captive propagation and translocation are becoming vital components of conservation and management strategies for Eastern hellbender (Cryptobranchus a. alleganiensis) populations. Zoos, aquaria, universities, and state and federal agencies are concomitantly collaborating on the protection, education, and maintenance of captive populations of this unusual, cryptic salamander. Conservation strategies include the use of artificial nesting structures, collection of eggs from the wild, and head-starting individuals in zoos or hatcheries. The effects of these strategies need to be monitored, however, traditional survey and monitoring methods for the species in the wild involves rock-lifting, which has the potential to both harm habitat and alter reproductive behavior. Therefore, there is a need to develop effective, non-invasive and non-destructive methods of monitoring both wild and captive populations of Eastern hellbenders. Herein, we compare two simple, affordable, underwater video and camera systems (borescope and Aqua-Vu cameras) in their ability to 1) facilitate detection of adults under potential cover items and 2) facilitate nest detection and monitoring in both wild and captive environments. Both cameras were successful in detecting individual hellbender presence, albeit with different resolutions and detection times. The borescope was better at accessing deep cavities given its large flexible attachment which allowed for greater flexibility of scanning crevices of adult shelters. However, search time increased and even low levels of suspended sediment reduced visibility with the borescope. The Aqua-Vu camera provided greater overall visibility and faster detection of individuals under both natural and artificial shelters. There was a significant difference in the amount of time required to detect hellbenders with each camera design when searching under natural rocks (borescope: median = 67.8 s, Aqua-Vu: median = 39.1 s; Kruskal Wallis Test H = 15.62, p