36 results on '"Arnaldo L. Colombo"'
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2. The emerging threat antifungal-resistant Candida tropicalis in humans, animals, and environment
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Ricardo Lima, Felipe C. Ribeiro, Arnaldo L. Colombo, and Joăo N. de Almeida
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Candida tropicalis ,animals ,humans ,environment ,resistance ,Plant culture ,SB1-1110 - Abstract
Antifungal resistance in humans, animals, and the environment is an emerging problem. Among the different fungal species that can develop resistance, Candida tropicalis is ubiquitous and causes infections in animals and humans. In Asia and some Latin American countries, C. tropicalis is among the most common species related to candidemia, and mortality rates are usually above 40%. Fluconazole resistance is especially reported in Asian countries and clonal spread in humans and the environment has been investigated in some studies. In Brazil, high rates of azole resistance have been found in animals and the environment. Multidrug resistance is still rare, but recent reports of clinical multidrug-resistant isolates are worrisome. The molecular apparatus of antifungal resistance has been majorly investigated in clinical C. tropicalis isolates, revealing that this species can develop resistance through the conjunction of different adaptative mechanisms. In this review article, we summarize the main findings regarding antifungal resistance and Candida tropicalis through an “One Health” approach.
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- 2022
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3. Extracellular Vesicles from Candida haemulonii var. vulnera Modulate Macrophage Oxidative Burst
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Bianca T. M. Oliveira, Thales M. H. Dourado, Patrick W. S. Santos, Tamires A. Bitencourt, Carlos R. Tirapelli, Arnaldo L. Colombo, and Fausto Almeida
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Candida haemulonii species complex ,fungal extracellular vesicles ,oxidative stress ,immunomodulatory activity ,Biology (General) ,QH301-705.5 - Abstract
Members of the Candida haemulonii species complex are multidrug-resistant emergent yeast pathogens able to cause superficial and invasive infections in risk populations. Fungal extracellular vesicles (EVs) play a critical role in the pathogenicity and virulence of several species and may perform essential functions during infections, such as carrying virulence factors that behave in two-way communications with the host, affecting survival and fungal resistance. Our study aimed to describe EV production from Candida haemulonii var. vulnera and evaluate whether murine macrophage RAW 264.7 cells respond to their stimuli by generating an oxidative response after 24 h. For this purpose, reactive oxygen species detection assays demonstrated that high concentrations of yeast and EVs (1010 particles/mL) of Candida haemulonii did not change macrophage viability. However, the macrophages recognized these EVs and triggered an oxidative response through the classical NOX-2 pathway, increasing O2•− and H2O2 levels. However, this stress did not cause lipid peroxidation in the RAW 264.7 cells and neither lead to the activation of the COX-2–PGE2 pathway. Thus, our data suggest that low concentrations of C. haemulonii EVs are not recognized by the classical pathway of the oxidative burst generated by macrophages, which might be an advantage allowing the transport of virulence factors via EVs, not identified by the host immune system that could work as fine tube regulators during infections caused by C. haemulonii. In contrast, C. haemulonii var. vulnera and high EV concentrations activated microbicidal actions in macrophages. Therefore, we propose that EVs could participate in the virulence of the species and that these particles could be a source of antigens to be exploited as new therapeutic targets.
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- 2023
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4. Epidemiologic and Clinical Progression of Lobomycosis among Kaiabi Indians, Brazil, 1965–2019
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Marcos C. Florian, Douglas A. Rodrigues, Sofia B.M. de Mendonça, Arnaldo L. Colombo, and Jane Tomimori
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lobomycosis ,epidemiology ,fungus ,Lacazia loboi ,Kaiabi Indians ,South American ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Lobomycosis is a rare granulomatous skin disease with a high prevalence in the Amazon region. The Kaiabi Indians are an especially affected group. We studied the current epidemiologic and clinical progression of lobomycosis among the Kaiabi in Brazil, from initial case reports in 1965 through 2019. A total of 60 lobomycosis cases had been reported among the Kaiabi, and we identified 3 new cases in our review. Of 550 cases of lobomycosis ever reported worldwide, 11.5% were among the Kaiabi. We note a high incidence among female Kaiabi and a precocious onset of disease in this indigenous population. Male Kaiabi frequently are infected with the multicentric form and women more frequently exhibit the localized form. Ulcerated lesions are observed more often in the multicentric form. The prevalence among this indigenous group could be explained by genetic susceptibility and lifestyle, which exposes them to a particular agent in the habitats in which they live.
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- 2020
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5. Short Tandem Repeat Genotyping and Antifungal Susceptibility Testing of Latin American Candida tropicalis Isolates
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Bram Spruijtenburg, Cynthea C. S. Z. Baqueiro, Arnaldo L. Colombo, Eelco F. J. Meijer, João N. de Almeida, Indira Berrio, Norma B. Fernández, Guilherme M. Chaves, Jacques F. Meis, Theun de Groot, and on behalf of the Latin American Group for Investigating Candida Tropicalis Resistance
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Candida tropicalis ,genotyping ,short tandem repeat ,PCR ,antifungal susceptibility ,Biology (General) ,QH301-705.5 - Abstract
Candida tropicalis is emerging as one of the most common Candida species causing opportunistic infections in Latin America. Outbreak events caused by C. tropicalis were reported, and antifungal resistant isolates are on the rise. In order to investigate population genomics and look into antifungal resistance, we applied a short tandem repeat (STR) genotyping scheme and antifungal susceptibility testing (AFST) to 230 clinical and environmental C. tropicalis isolates from Latin American countries. STR genotyping identified 164 genotypes, including 11 clusters comprised of three to seven isolates, indicating outbreak events. AFST identified one isolate as anidulafungin-resistant and harboring a FKS1 S659P substitution. Moreover, we identified 24 clinical and environmental isolates with intermediate susceptibility or resistance to one or more azoles. ERG11 sequencing revealed each of these isolates harboring a Y132F and/or Y257H/N substitution. All of these isolates, except one, were clustered together in two groups of closely related STR genotypes, with each group harboring distinct ERG11 substitutions. The ancestral C. tropicalis strain of these isolates likely acquired the azole resistance-associated substitutions and subsequently spread across vast distances within Brazil. Altogether, this STR genotyping scheme for C. tropicalis proved to be useful for identifying unrecognized outbreak events and better understanding population genomics, including the spread of antifungal-resistant isolates.
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- 2023
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6. Trends towards lower azole susceptibility among 200 Candida tropicalis bloodstream isolates from Brazilian medical centres
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Larissa M. Favarello, Marcio Nucci, Flavio Queiroz-Telles, Thaís Guimarães, Mauro J. Salles, Teresa C.T. Sukiennik, Daniel A. da Matta, Analy S.A. Melo, and Arnaldo L. Colombo
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Candida tropicalis ,Antifungal resistance ,Candidaemia ,MALDI-TOF/MS ,Emergent fungal pathogen ,Fluconazole resistance ,Microbiology ,QR1-502 - Abstract
ABSTRACT: Objectives: Candida tropicalis is one of the three most frequent species causing candidaemia in Latin America. Despite the high prevalence of C. tropicalis in candidaemia cases in Brazil, little is known about the trends in fluconazole susceptibility over time. The objective of this study was to evaluate temporal trends in azole resistance rates among C. tropicalis bloodstream isolates from patients treated in six Brazilian medical centres over a 12-year period. Methods: We selected 200 C. tropicalis bloodstream isolates from six medical centres in Brazil collected between 2007 and 2018. Species identification was confirmed by MALDI-TOF/MS. Antifungal susceptibility testing for four antifungal agents was performed by the Clinical and Laboratory Standards Institute (CLSI) microbroth method. Results: Overall, rates of non-susceptibility were 4% and 3.5% to fluconazole and voriconazole, respectively. All isolates were susceptible to amphotericin B and only one isolate was resistant to echinocandins. Conclusion: Although we failed to demonstrate statistical differences in the rates of azole resistance documented during the period of analysis, trends towards lower susceptibility to fluconazole and voriconazole were shown.
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- 2021
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7. Donor-Derived Transmission of Cryptococcus gattii sensu lato in Kidney Transplant Recipients
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Daniel W.C.L. Santos, Ferry Hagen, Jacques F. Meis, Marina P. Cristelli, Laila A. Viana, Fabiola D.C. Bernardi, Hélio Tedesco-Silva, José O. Medina-Pestana, and Arnaldo L. Colombo
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Antifungal therapy ,Cryptococcus gattii ,donor-transmitted disease ,fungal infection ,fungi ,HIV/AIDS and other retroviruses ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We describe cases of donor-derived transmission of Cryptococcus deuterogattii in 2 kidney transplant recipients in Brazil and published information on other cases. Prompt reduction of immunosuppression and initiation of antifungal therapy was required to successfully control the fungal infections and preserve engraftment.
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- 2020
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8. Genotyping Reveals High Clonal Diversity and Widespread Genotypes of Candida Causing Candidemia at Distant Geographical Areas
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Jesús Guinea, Maiken C. Arendrup, Rafael Cantón, Emilia Cantón, Julio García-Rodríguez, Ana Gómez, Elia Gómez G. de la Pedrosa, Rasmus K. Hare, Beatriz Orden, Maurizio Sanguinetti, Javier Pemán, Brunella Posteraro, Alba Ruiz-Gaitán, Gabriella Parisi, Daniel Archimedes Da Matta, Arnaldo L. Colombo, Carlos Sánchez-Carrillo, Elena Reigadas, Patricia Muñoz, and Pilar Escribano
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Candida ,genotyping ,microsatellite ,cluster ,widespread ,Microbiology ,QR1-502 - Abstract
The objectives of this study were to gain further insight on Candida genotype distribution and percentage of clustered isolates between hospitals and to identify potential clusters involving different hospitals and cities. We aim to genotype Candida spp. isolates causing candidemia in patients admitted to 16 hospitals in Spain, Italy, Denmark, and Brazil. Eight hundred and eighty-four isolates (Candida albicans, n = 534; C. parapsilosis, n = 282; and C. tropicalis, n = 68) were genotyped using species-specific microsatellite markers. CDC3, EF3, HIS3, CAI, CAIII, and CAVI were used for C. albicans, Ctrm1, Ctrm10, Ctrm12, Ctrm21, Ctrm24, and Ctrm28 for C. tropicalis, and CP1, CP4a, CP6, and B for C. parapsilosis. Genotypes were classified as singletons (genotype only found once) or clusters (same genotype infecting two or more patients). Clusters were defined as intra-hospital (involving patients admitted to a single hospital), intra-ward (involving patients admitted to the same hospital ward) or widespread (involving patients admitted to different hospitals). The percentage of clusters and the proportion of patients involved in clusters among species, genotypic diversity and distribution of genetic diversity were assessed. Seven hundred and twenty-three genotypes were detected, 78 (11%) being clusters, most of which (57.7%; n = 45/78) were intra-hospital clusters including intra-ward ones (42.2%; n = 19/45). The proportion of clusters was not statistically different between species, but the percentage of patients in clusters varied among hospitals.A number of genotypes (7.2%; 52/723) were widespread (found at different hospitals), comprising 66.7% (52/78) of clusters, and involved patients at hospitals in the same city (n = 21) or in different cities (n = 31). Only one C. parapsilosis cluster was a widespread genotype found in all four countries. Around 11% of C. albicans and C. parapsilosis isolates causing candidemia are clusters that may result from patient-to-patient transmission, widespread genotypes commonly found in unrelated patients, or insufficient microsatellite typing genetic discrimination.
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- 2020
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9. Outbreak of Fusarium oxysporum infections in children with cancer: an experience with 7 episodes of catheter-related fungemia
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Fabianne Carlesse, Anna-Paula C. Amaral, Sarah S. Gonçalves, Hemilio Xafranski, Maria-Lucia M. Lee, Victor Zecchin, Antonio S. Petrilli, Abdullah M. Al-Hatmi, Ferry Hagen, Jacques F. Meis, and Arnaldo L. Colombo
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Fusariosis ,Fusarium sp. ,Fusarium oxysporum ,Catheter-related Fusarium fungemia ,Pediatric invasive fungal infections ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Fusarium species are widely spread in nature as plant pathogens but are also able to cause opportunistic fungal infections in humans. We report a cluster of Fusarium oxysporum bloodstream infections in a single pediatric cancer center. Methods All clinical and epidemiological data related to an outbreak involving seven cases of fungemia by Fusarium oxysporum during October 2013 and February 2014 were analysed. All cultured isolates (n = 14) were identified to species level by sequencing of the TEF1 and RPB2 genes. Genotyping of the outbreak isolates was performed by amplified fragment length polymorphism fingerprinting. Results In a 5-month period 7 febrile pediatric cancer patients were diagnosed with catheter-related Fusarium oxysporum bloodstream infections. In a time span of 11 years, only 6 other infections due to Fusarium were documented and all were caused by a different species, Fusarium solani. None of the pediatric cancer patients had neutropenia at the time of diagnosis and all became febrile within two days after catheter manipulation in a specially designed room. Extensive environmental sampling in this room and the hospital did not gave a clue to the source. The outbreak was terminated after implementation of a multidisciplinary central line insertion care bundle. All Fusarium strains from blood and catheter tips were genetically related by amplified fragment length polymorphism fingerprinting. All patients survived the infection after prompt catheter removal and antifungal therapy. Conclusion A cluster with, genotypical identical, Fusarium oxysporum strains infecting 7 children with cancer, was most probably catheter-related. The environmental source was not discovered but strict infection control measures and catheter care terminated the outbreak.
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- 2017
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10. Fungal Cell Wall: Emerging Antifungals and Drug Resistance
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Soraia L. Lima, Arnaldo L. Colombo, and João N. de Almeida Junior
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fungal cell wall ,antifungals ,therapy ,resistance ,1,3-β-D-Glucan Synthase Inhibitors ,ibrexafungerp ,Microbiology ,QR1-502 - Abstract
The cell wall is an essential component in fungal homeostasis. The lack of a covering wall in human cells makes this component an attractive target for antifungal development. The host environment and antifungal stress can lead to cell wall modifications related to drug resistance. Antifungals targeting the cell wall including the new β-D-glucan synthase inhibitor ibrexafungerp and glycosyl-phosphatidyl Inositol (GPI) anchor pathway inhibitor fosmanogepix are promising weapons against antifungal resistance. The fosmanogepix shows strong in vitro activity against the multidrug-resistant species Candida auris, Fusarium solani, and Lomentospora prolificans. The alternative carbon sources in the infection site change the cell wall β-D-glucan and chitin composition, leading to echinocandin and amphotericin resistance. Candida populations that survive echinocandin exposure develop tolerance and show high chitin content in the cell wall, while fungal species such as Aspergillus flavus with a higher β-D-glucan content may show amphotericin resistance. Therefore understanding fungal cell dynamics has become important not only for host-fungal interactions, but also treatment of fungal infections. This review summarizes recent findings regarding antifungal therapy and development of resistance related to the fungal cell wall of the most relevant human pathogenic species.
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- 2019
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11. Dual DNA Barcoding for the Molecular Identification of the Agents of Invasive Fungal Infections
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Minh Thuy Vi Hoang, Laszlo Irinyi, Sharon C. A. Chen, Tania C. Sorrell, The ISHAM Barcoding of Medical Fungi Working Group, Wieland Meyer, Michael Arabatzis, Ian Arthur, Jose F. Cano-Lira, Gianluigi Cardinali, Laura Rosio Castañón, Sharon Chen, Wen Chen, Ariya Chindamporn, Arnaldo L. Colombo, Marie Desnos-Ollivier, Wilhelm de Beer, Sybren de Hoog, Françoise Dromer, Dea Garcia-Hermoso, Marieka Gryzenhout, Josep Guarro, Catriona Halliday, Marijke Hendrickx, Sabine Huhndorf, C. Andre Levesque, Maria Luiza Moretti, Mauro de Medeiros Muniz, Analy Salles de Azevedo Melo, Angela Satie Nishikaku, Anne-Cécile Normand, Célia Pais, Renaud Piarroux, Stéphane Ranque, Barbara Robbertse, Vincent Robert, Conrad L. Schoch, Keith A. Seifert, Célia Maria de Almeida Soares, John L. Spouge, Dirk Stubbe, Maria Lucia Taylor, Conchita Toriello, Aristea Velegraki, Chompoonek Yurayart, and Rosely Maria Zancopé-Oliveira
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identification ,fungal DNA barcoding ,dual barcoding system ,internal transcribed spacer region ,translational elongation factor 1α ,ISHAM Barcoding Database ,Microbiology ,QR1-502 - Abstract
Invasive fungal infections, such as aspergillosis, candidiasis, and cryptococcosis, have significantly increased among immunocompromised people. To tackle these infections the first and most decisive step is the accurate identification of the causal pathogen. Routine identification of invasive fungal infections has progressed away from culture-dependent methods toward molecular techniques, including DNA barcoding, a highly efficient and widely used diagnostic technique. Fungal DNA barcoding previously relied on a single barcoding region, the internal transcribed spacer (ITS) region. However, this allowed only for 75% of all fungi to be correctly identified. As such, the translational elongation factor 1α (TEF1α) was recently introduced as the secondary barcode region to close the gap. Both loci together form the dual fungal DNA barcoding scheme. As a result, the ISHAM Barcoding Database has been expanded to include sequences for both barcoding regions to enable practical implementation of the dual barcoding scheme into clinical practice. The present study investigates the impact of the secondary barcode on the identification of clinically important fungal taxa, that have been demonstrated to cause severe invasive disease. Analysis of the barcoding regions was performed using barcoding gap analysis based on the genetic distances generated with the Kimura 2-parameter model. The secondary barcode demonstrated an improvement in identification for all taxa that were unidentifiable with the primary barcode, and when combined with the primary barcode ensured accurate identification for all taxa analyzed, making DNA barcoding an important, efficient and reliable addition to the diagnostic toolset of invasive fungal infections.
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- 2019
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12. Corrigendum: Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon?
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Tamara Zoran, Bettina Sartori, Laura Sappl, Maria Aigner, Ferran Sánchez-Reus, Antonio Rezusta, Anuradha Chowdhary, Saad J. Taj-Aldeen, Maiken C. Arendrup, Salvatore Oliveri, Dimitrios P. Kontoyiannis, Ana Alastruey-Izquierdo, Katrien Lagrou, Giuliana Lo Cascio, Jacques F. Meis, Walter Buzina, Claudio Farina, Miranda Drogari-Apiranthitou, Anna Grancini, Anna M. Tortorano, Birgit Willinger, Axel Hamprecht, Elizabeth Johnson, Lena Klingspor, Valentina Arsic-Arsenijevic, Oliver A. Cornely, Joseph Meletiadis, Wolfgang Prammer, Vivian Tullio, Jörg-Janne Vehreschild, Laura Trovato, Russell E. Lewis, Esther Segal, Peter-Michael Rath, Petr Hamal, Manuel Rodriguez-Iglesias, Emmanuel Roilides, Sevtap Arikan-Akdagli, Arunaloke Chakrabarti, Arnaldo L. Colombo, Mariana S. Fernández, M. Teresa Martin-Gomez, Hamid Badali, Georgios Petrikkos, Nikolai Klimko, Sebastian M. Heimann, Omrum Uzun, Maryam Roudbary, Sonia de la Fuente, Jos Houbraken, Brigitte Risslegger, Raquel Sabino, Cornelia Lass-Flörl, and Michaela Lackner
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cryptic species ,Aspergillus section Terrei ,susceptibility profiles ,azoles ,Cyp51A alterations ,Microbiology ,QR1-502 - Published
- 2019
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13. Emergence of Candida auris in Brazil in a COVID-19 Intensive Care Unit
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João N. de Almeida, Elaine C. Francisco, Ferry Hagen, Igor B. Brandão, Felicidade M. Pereira, Pedro H. Presta Dias, Magda M. de Miranda Costa, Regiane T. de Souza Jordão, Theun de Groot, and Arnaldo L. Colombo
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Candida auris ,COVID-19 ,intensive care ,Brazil ,Biology (General) ,QH301-705.5 - Abstract
In December 2020, Candida auris emerged in Brazil in the city of Salvador. The first two C. auris colonized patients were in the same COVID-19 intensive care unit. Antifungal susceptibility testing showed low minimal inhibitory concentrations of 1 µg/mL, 2 µg/mL, 0.03 µg/L, and 0.06 µg/mL for amphotericin B, fluconazole, voriconazole, and anidulafungin, respectively. Microsatellite typing revealed that the strains are clonal and belong to the South Asian clade C. auris. The travel restrictions during the COVID-19 pandemic and the absence of travel history among the colonized patients lead to the hypothesis that this species was introduced several months before the recognition of the first case and/or emerged locally in the coastline Salvador area.
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- 2021
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14. Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon?
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Tamara Zoran, Bettina Sartori, Laura Sappl, Maria Aigner, Ferran Sánchez-Reus, Antonio Rezusta, Anuradha Chowdhary, Saad J. Taj-Aldeen, Maiken C. Arendrup, Salvatore Oliveri, Dimitrios P. Kontoyiannis, Ana Alastruey-Izquierdo, Katrien Lagrou, Giuliana Lo Cascio, Jacques F. Meis, Walter Buzina, Claudio Farina, Miranda Drogari-Apiranthitou, Anna Grancini, Anna M. Tortorano, Birgit Willinger, Axel Hamprecht, Elizabeth Johnson, Lena Klingspor, Valentina Arsic-Arsenijevic, Oliver A. Cornely, Joseph Meletiadis, Wolfgang Prammer, Vivian Tullio, Jörg-Janne Vehreschild, Laura Trovato, Russell E. Lewis, Esther Segal, Peter-Michael Rath, Petr Hamal, Manuel Rodriguez-Iglesias, Emmanuel Roilides, Sevtap Arikan-Akdagli, Arunaloke Chakrabarti, Arnaldo L. Colombo, Mariana S. Fernández, M. Teresa Martin-Gomez, Hamid Badali, Georgios Petrikkos, Nikolai Klimko, Sebastian M. Heimann, Omrum Uzun, Maryam Roudbary, Sonia de la Fuente, Jos Houbraken, Brigitte Risslegger, Cornelia Lass-Flörl, and Michaela Lackner
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cryptic species ,Aspergillus section Terrei ,susceptibility profiles ,azoles ,Cyp51A alterations ,Microbiology ,QR1-502 - Abstract
Objectives: Invasive mold infections associated with Aspergillus species are a significant cause of mortality in immunocompromised patients. The most frequently occurring aetiological pathogens are members of the Aspergillus section Fumigati followed by members of the section Terrei. The frequency of Aspergillus terreus and related (cryptic) species in clinical specimens, as well as the percentage of azole-resistant strains remains to be studied.Methods: A global set (n = 498) of A. terreus and phenotypically related isolates was molecularly identified (beta-tubulin), tested for antifungal susceptibility against posaconazole, voriconazole, and itraconazole, and resistant phenotypes were correlated with point mutations in the cyp51A gene.Results: The majority of isolates was identified as A. terreus (86.8%), followed by A. citrinoterreus (8.4%), A. hortai (2.6%), A. alabamensis (1.6%), A. neoafricanus (0.2%), and A. floccosus (0.2%). One isolate failed to match a known Aspergillus sp., but was found most closely related to A. alabamensis. According to EUCAST clinical breakpoints azole resistance was detected in 5.4% of all tested isolates, 6.2% of A. terreus sensu stricto (s.s.) were posaconazole-resistant. Posaconazole resistance differed geographically and ranged from 0% in the Czech Republic, Greece, and Turkey to 13.7% in Germany. In contrast, azole resistance among cryptic species was rare 2 out of 66 isolates and was observed only in one A. citrinoterreus and one A. alabamensis isolate. The most affected amino acid position of the Cyp51A gene correlating with the posaconazole resistant phenotype was M217, which was found in the variation M217T and M217V.Conclusions:Aspergillus terreus was most prevalent, followed by A. citrinoterreus. Posaconazole was the most potent drug against A. terreus, but 5.4% of A. terreus sensu stricto showed resistance against this azole. In Austria, Germany, and the United Kingdom posaconazole-resistance in all A. terreus isolates was higher than 10%, resistance against voriconazole was rare and absent for itraconazole.
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- 2018
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15. Performance of cryptococcal antigen lateral flow assay in serum, cerebrospinal fluid, whole blood, and urine in HIV-infected patients with culture-proven cryptococcal meningitis admitted at a Brazilian referral center
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José E. Vidal, Carolina Toniolo, Adriana Paulino, Arnaldo L. Colombo, Marilena dos Anjos Martins, Cristina da Silva Meira, Renata Guise Soares Azevedo, Vera Lucia Pereira-Chioccola, Hélio Rodrigues Gomes, Marcia dos Santos Lazera, Augusto C. Penalva de Oliveira, and David R. Boulware
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Cryptococcal meningitis ,Cryptococcosis ,Diagnosis ,Human immunodeficiency virus ,Acquired immunodeficiency syndrome ,Arctic medicine. Tropical medicine ,RC955-962 ,Infectious and parasitic diseases ,RC109-216 - Abstract
ABSTRACT Cryptococcal meningitis is the most common cause of opportunistic meningitis in HIV-infected patients in Brazil and causes unacceptable high mortality rates. In this study, HIV-infected patients with a first episode of culture-proven cryptococcal meningitis in cerebrospinal fluid (CSF) were prospectively included in order to evaluate sensitivity of cryptococcal antigen (CrAg) lateral flow assay (LFA) in serum, CSF, whole blood (fingerstick), and fresh urine. In addition, HIV-infected patients with other neurological confirmed diseases were included in order to evaluate the specificity of CrAg LFA in serum. Twenty patients with cryptococcal meningitis were included and in 19 of them, CrAg LFA in CSF, serum, and whole blood were positive (95% sensitivity). In 18 patients, India ink test was positive in CSF (90% sensitivity), and in 16 cases, CrAg LFA was positive in urine (80% sensitivity). Thirty-six HIV-infected patients with other neurological diseases had negative results of CrAg LFA in serum (100% specificity). In conclusion, CrAg LFA in serum, CSF, and whole blood showed high sensitivity and specificity. Whole blood CrAg LFA seems to be a good and reliable strategy to improve AIDS-related cryptococcal meningitis diagnosis in Brazil.
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- 2018
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16. Does the change on gastrointestinal tract microbiome affects host?
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Elisa M. Beirão, Ana Carolina B. Padovan, Juvêncio J.D. Furtado, Arnaldo L. Colombo, and Eduardo A.S. Medeiros
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Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
During the past decade, studies on the composition of human microbiota and its relation to the host became one of the most explored subjects of the medical literature. The development of high-throughput molecular technologies allowed a deeper characterization of human microbiota and a better understanding of its relationship with health and disease. Changes in human habits including wide use of antimicrobials can result in dysregulation of host–microbiome homeostasis, with multiple consequences. The purpose of this review is to highlight the most important evidence in the literature of host–microbiome interactions and illustrate how these intriguing relations may lead to new treatment and prevention strategies. Keywords: Gastrintestinal microbiome, Human
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- 2014
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17. Paracoccidioidomycosis in Immunocompromised Patients: A Literature Review
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João N. de Almeida, Paula M. Peçanha, and Arnaldo L. Colombo
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paracoccidioidomycosis ,HIV ,cancer ,lymphoma ,kidney transplant ,TNF inhibitors ,literature review ,Biology (General) ,QH301-705.5 - Abstract
Paracoccidioidomycosis (PCM) is an endemic mycosis found in Latin America that causes systemic disease mostly in immunocompetent hosts. A small percentage of PCM occurs in immunocompromised patients where low clinical suspicion of the infection, late diagnosis, and uncertainties about its management are factors that negatively impact their outcomes. We conducted a literature review searching reports on PCM associated to HIV, cancer, maligned hemopathies, solid organ transplantation, and immunotherapies, in order to check for peculiarities in terms of natural history and challenges in the clinical management of PCM in this population. HIV patients with PCM usually had low T CD4+ cell counts, pulmonary and lymph nodes involvement, and a poorer prognosis (≈50% mortality). Most of the patients with PCM and cancer had carcinoma of the respiratory tract. Among maligned hemopathies, PCM was more often related to lymphoma. In general, PCM prognosis in patients with malignant diseases was related to the cancer stage. PCM in transplant recipients was mostly associated with the late phase of kidney transplantation, with a high mortality rate (44%). Despite being uncommon, reactivation of latent PCM may take place in the setting of immunocompromised patients exhibiting clinical particularities and it carries higher mortality rates than normal hosts.
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- 2018
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18. Surveillance programs for detection and characterization of emergent pathogens and antimicrobial resistance: results from the Division of Infectious Diseases, UNIFESP
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Arnaldo L. Colombo, Mario Janini, Reinaldo Salomão, Eduardo A. S. Medeiros, Sergio B. Wey, and Antonio C. C. Pignatari
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doenças infecciosas emergentes ,HIV ,AIDS ,candidemia ,resistência antimicrobiana ,bacteremia ,sepsia ,infecções hospitalares ,emerging infectious diseases ,antimicrobial resistance ,sepsis ,nosocomial infectious ,Science - Abstract
Several epidemiological changes have occurred in the pattern of nosocomial and community acquired infectious diseases during the past 25 years. Social and demographic changes possibly related to this phenomenon include a rapid population growth, the increase in urban migration and movement across international borders by tourists and immigrants, alterations in the habitats of animals and arthropods that transmit disease, as well as the raise of patients with impaired host defense abilities. Continuous surveillance programs of emergent pathogens and antimicrobial resistance are warranted for detecting in real time new pathogens, as well as to characterize molecular mechanisms of resistance. In order to become more effective, surveillance programs of emergent pathogens should be organized as a multicenter laboratory network connected to the main public and private infection control centers. Microbiological data should be integrated to guide therapy, adapting therapy to local ecology and resistance patterns. This paper presents an overview of data generated by the Division of Infectious Diseases, Federal University of São Paulo, along with its participation in different surveillance programs of nosocomial and community acquired infectious diseases.Várias alterações epidemiológicas ocorreram no perfil das doenças infecciosas hospitalares e comunitárias nos últimos 25 anos. Mudanças sociais e demográficas possivelmente relacionadas com esse fenômeno incluem o rápido crescimento populacional, o aumento da migração urbana e deslocamento através de fronteiras internacionais por turistas e imigrantes, alterações nos habitats de animais e artrópodes que transmitem doença assim como o aumento no número de pacientes com deficiências nas respostas de defesa. Os programas contínuos de vigilância de patógenos emergentes e resistência antimicrobiana são necessários para a detecção em tempo real de novos patógenos assim como para caracterizar mecanismos moleculares de resistência. Para serem mais efetivos, os programasde vigilância dos patógenos emergentes devem ser organizados em uma rede de laboratórios multicêntricos ligados aos principais centros de controle de infecções, públicos e privados. Os dados microbiológicos devem ser integrados a guias terapêuticos adaptando práticas terapêuticas à ecologia local eaos padrões de resistência. O artigo apresenta uma revisão dos dados gerados pela Disciplina de Infectologia, Universidade Federal de São Paulo, contemplando sua participação nos diferentes programas de vigilância de doenças infecciosas hospitalares e adquiridas na comunidade.
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- 2009
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19. Carbohydrate assimilation profiles of Brazilian Candida dubliniensis isolates based on ID 32C system Identificação de Candida dubliniensis isoladas no Brasil, através do método comercial ID 32C
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Sydney Hartz Alves, Jorge A. Horta, Eveline P. Milán, Liliane A. Scheid, Marilene H. Vainstein, Janio M. Santurio, and Arnaldo L. Colombo
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Candida dubliniensis ,ID 32C ,Phenotypic identification ,Arctic medicine. Tropical medicine ,RC955-962 ,Infectious and parasitic diseases ,RC109-216 - Abstract
The purpose of the present study was to evaluate the identification of 19 Brazilian C. dubliniensis based on the biochemical profile exhibited when tested by the commercial identification kit ID 32C (bioMerieux). Thirteen of the isolates were rigorously identified as C. dubliniensis and the remaining isolates (six) were considered as having a doubtful profile but the software also suggested that there was 83.6% of chances for them to be C. dubliniensis. As well as pointed by the literature the identification obtained by phenotypic tests should be considered presumptive for C. dubliniensis due to variability of this new species.Dezenove culturas de C. dubliniensis isoladas no Brasil, previamente identificadas através de métodos genotípicos, foram avaliadas pelo kit comercial ID 32C (bioMerieux). Treze culturas foram identificadas como C. dubliniensis, mas as demais (seis) evidenciaram perfil duvidoso, embora o software do sistema sugerisse 83,6% de chances das mesmas pertencerem à espécie C. dubliniensis. A literatura tem registrado grande variabilidade fenotípica com esta espécie e, por isto, as identificações obtidas com este sistema deverão ser consideradas como presuntivas.
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- 2005
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20. Emergence of resistant Candida in neutropenic patients
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Marcio Nucci and Arnaldo L. Colombo
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Candida ,resistance ,neutropenic ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Problems with resistance to antifungal drugs have emerged due to an increase in the incidence of systemic fungal infections and widespread use of antifungal agents. Accordingly, efforts have been made to develop adequate fungal susceptibility tests. The ideal test should have high intra and inter-laboratory reproducibility, good correlation with the clinical outcome, and should be easy to perform. While no such test has yet been developed, advances have been made. Over the past decade, many reports of fungal resistance have been published, most of them in AIDS patients. Though the frequency of resistant strains is still low in neutropenic cancer patients, and is mostly limited to Candida glabrata and Candida krusei, resistance to Candida albicans has also been reported.
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21. Fluconazole susceptibility of Brazilian Candida isolates assessed by a disk diffusion method
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Arnaldo L. Colombo, Daniel da Matta, Leila Paula de Almeida, and Robert Rosas
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Candida ,fluconazole ,antifungal resistance ,disk diffusion method ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
The increasing magnitude of antifungal resistance as well as the advent of new antifungal drugs has generated a renewed interest in fungal susceptibility testing. We used a previously described disk diffusion method to evaluate the susceptibility profile of a large collection of recent clinical Candida spp. isolates against fluconazole. A total of 1,784 yeast isolates were tested, including the following species: Candida albicans (1,036), C. tropicalis (279), C. parapsilosis (202), C. glabrata (119), C. guilliermondii (90), C. krusei (32), C. lusitaniae (7), Candida spp. (14) and other yeasts (5). Susceptibility ranking to fluconazole obtained with all yeasts tested was: C. parapsilosis @ C. tropicalis @ C. guilliermondii > C. glabrata > C. krusei. The majority (94%) of all yeast isolates tested were susceptible to fluconazole. Isolates of C. glabrata and C. krusei exhibited the highest rate of DDS/resistance among all isolates tested but they represented only 9% of all yeasts routinely sent to our lab. Careful periodical surveillance is needed in order to identify any changes in the susceptibility patterns of fluconazole with the increased use of this antifungal agent in Brazilian tertiary care hospitals.
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22. Invasive Aspergillosis in Patients with Acute Leukemia: Comparison Between Acute Myeloid and Acute Lymphoid Leukemia
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Arnaldo L. Colombo, Maria Daniela Bergamasco, Simone A. Nouér, Paulo de Tarso Oliveira e Castro, Alessandro C. Pasqualotto, Flavio de Queiroz-Telles, Edson Abdala, Jessica F. Ramos, Diego R. Falci, and Marcio Nucci
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Veterinary (miscellaneous) ,Agronomy and Crop Science ,Applied Microbiology and Biotechnology ,Microbiology - Published
- 2022
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23. Quandaries of deciding when to change first-line therapy in invasive pulmonary aspergillosis
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Arnaldo L Colombo, João N De Almeida, Russell E Lewis, and Dimitrios P Kontoyiannis
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Invasive Pulmonary Aspergillosis ,Pharmacology ,Microbiology (medical) ,Antifungal Agents ,Infectious Diseases ,Humans ,Aspergillosis ,Pharmacology (medical) ,Invasive Fungal Infections - Abstract
We read the excellent viewpoint by Slavin et al. (J Antimicrob Chemother 2022; 77: 16–23) that draws upon the experience of an advisory board of notable experts to comprehensively address many of the clinical factors that drive the need for changes in antifungal therapy for invasive aspergillosis (IA). As noted by the authors, there remains a paucity of quality data to support many of the decisions faced by clinicians managing patients with IA. However, we would like to highlight several other important issues, not fully addressed in that viewpoint, that play an important role in deciding when to change antifungal therapy for IA.
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- 2022
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24. Novel Non-Hot Spot Modification in Fks1 of Candida auris Confers Echinocandin Resistance
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Milena Kordalewska, Geselle Cancino-Prado, João Nobrega de Almeida Júnior, Igor Brasil Brandão, Renata Tigulini de Souza Peral, Arnaldo L. Colombo, and David S. Perlin
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Pharmacology ,Infectious Diseases ,Pharmacology (medical) - Abstract
We determined the echinocandin susceptibility and FKS1 genotypes of 13 clinical isolates of Candida auris that were recovered from 4 patients at a tertiary care center in Salvador, Brazil. Three isolates were categorized as echinocandin-resistant, and they harbored a novel FKS1 mutation that led to an amino acid change W691L located downstream from hot spot 1.
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- 2023
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25. Novel non hot spot modification in Fks1 ofCandida aurisconfers echinocandin resistance
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Milena Kordalewska, Geselle Cancino-Prado, João Nobrega de Almeida Júnior, Igor Brasil Brandão, Renata Tigulini de Souza Peral, Arnaldo L. Colombo, and David S. Perlin
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We determined echinocandin susceptibility andFKS1genotypes of thirteen clinical isolates ofCandida aurisrecovered from four patients at a tertiary care center in Salvador, Brazil. Three isolates were categorized as echinocandin-resistant and harbored a novelFKS1mutation leading to an amino acid change W691L located downstream from hot-spot 1. When introduced to echinocandin-susceptibleC. aurisstrains by CRISPR/Cas9, Fks1 W691L induced elevated MIC values to all echinocandins (ANF 16-32x; CAS >64x; MCF >64x).
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- 2023
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26. ERG11 Analysis among Clinical Isolates of Trichosporon asahii with Different Azole Susceptibility Profiles
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João Nobrega de Almeida, Cristina Jimenez-Ortigosa, Elaine Cristina Francisco, Arnaldo L. Colombo, and David S. Perlin
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Pharmacology ,Infectious Diseases ,Mechanisms of Resistance ,Pharmacology (medical) - Abstract
We analyzed a cohort of Trichosporon asahii strains with different MICs of fluconazole and voriconazole and evaluated the presence of ERG11 mutations. ERG11 mutation conferring an amino acid change was found and its resistance potential was evaluated by cloning into Saccharomyces cerevisiae susceptible host strain. Transformants were not resistant to either fluconazole nor voriconazole.
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- 2022
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27. P149 Short tandem repeat genotyping of South American Candida tropicalis isolates
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Bram Spruijtenburg, Cynthea C.S.Z. Baqueiro, João Nóbrega de Almeida Jr., Arnaldo L. Colombo, Theun de Groot, and Jacques F. Meis
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Infectious Diseases ,General Medicine - Abstract
Poster session 2, September 22, 2022, 12:30 PM - 1:30 PM Candida tropicalis is a clinically relevant yeast that causes candidemia in humans with a high mortality rate. The yeast primarily infects immunocompromised patients and causes outbreaks in health care facilities. A short tandem repeat (STR) typing scheme for C. tropicalis was applied to a collection of 217 clinical and environmental isolates from South America, predominantly from Brazil, and included nine fluconazole-resistant isolates. Application of the STR typing resulted in the identification of 153 genotypes. Typing demonstrated 11 clusters containing more than two isolates. In one cluster of six, we found three fluconazole-resistant isolates, while there were another five closely related fluconazole-resistant isolates. ERG11 mutation screening was performed on all 9 resistant isolates. The closely related resistant isolates all contained Y132F in combination with the novel Y257H/N mutation. The remaining resistant isolate did not exhibit mutations in ERG11 suggesting a different resistance mechanism. Altogether, we applied a novel STR genotyping for C. tropicalis and showed several in-hospital clusters suggesting cross-transmission.
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- 2022
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28. Outcome predictors of 84 patients with hematologic malignancies andFusariuminfection
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Marcio Nucci, Ricardo Pasquini, Gisele Duboc, Cristiana Solza, Plínio Trabasso, José Salvador Oliveira, Flavio Queiroz-Telles, Claudia Mangini, Elias J. Anaissie, Vaneusa A. Moreira, Cármino A. Souza, Belinda P. Simões, Arnaldo L. Colombo, Carlos A. Martins, Julio C. Voltarelli, Nestor Paraguay, Angelo Maiolino, Jorge Vaz, Silvia Costa, and Carlos E. Levy
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Fusariosis ,Cancer Research ,medicine.medical_specialty ,Leukopenia ,business.industry ,Mortality rate ,Hazard ratio ,Retrospective cohort study ,Neutropenia ,medicine.disease ,Surgery ,Transplantation ,Oncology ,Internal medicine ,medicine ,medicine.symptom ,business ,Survival analysis - Abstract
BACKGROUND Invasive infection by Fusarium sp. is associated with high mortality in patients with hematologic cancer. Yet to the authors' knowledge, little is known regarding predictors of adverse outcome. METHODS The authors conducted a retrospective review of the records of patients with hematologic carcinoma and invasive fusariosis who were treated at one institution in the U.S. and at 11 centers in Brazil. RESULTS The records of 84 patients were evaluated. Neutropenia was present in 83% and 33 patients had undergone stem cell transplantation. Only 18 patients (21%) were alive 90 days after the diagnosis of fusariosis. Multivariate predictors of poor outcome were persistent neutropenia (hazard ratio [HR] of 5.43; 95% confidence interval [95% CI], 2.64–11.11) and use of corticosteroids (HR of 2.18; 95% CI, 1.98–3.96). The actuarial survival rate of patients without any of these factors was 67% compared with 30% for patients who recovered from neutropenia but were receiving corticosteroids and 4% for patients with persistent neutropenia only. None of the patients with both risk factors survived (P < 0.0001). CONCLUSIONS Measures to reduce the duration of neutropenia, as well as the judicious use of corticosteroids, may reduce the high mortality rate of fusariosis in patients with hematologic cancer. Cancer 2003;98:315–9. © 2003 American Cancer Society. DOI 10.1002/cncr.11510
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- 2003
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29. Performance of the Albicans ID2<FONT FACE=Symbol>Ò</FONT> chromogenic medium for rapid identification of Candida albicans Performance do meio cromogênico Albicans ID2<FONT FACE=Symbol>Ò</FONT> para a rápida identificação de Candida albicans
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Patricio Godoy-Martínez, Ana C. Azevedo, Viviane Reis, Thelma Alves, Leila P. Almeida, and Arnaldo L. Colombo
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Ò<%2FFONT>+media%22">Albicans ID2Ò media ,Ò<%2FFONT>%22">meio Albicans ID2Ò ,chromogenic medium ,Candida albicans ,lcsh:QR1-502 ,lcsh:Microbiology ,meio cromogênico - Abstract
The aim of our study was to evaluate the accuracy of the chromogenic media Albicans ID2Ò (bioMérieux, France) for the identification of Candida albicans among 330 yeast strains. All C. albicans (100) and C. dubliniensis (20) strains exhibited blue color when cultured on Albicans ID2Ò. However, the blue color was also exhibited by cultures of C. rugosa (30/30) and C. tropicalis (3/50) isolates.O objetivo do nosso estudo foi avaliar a eficácia do meio cromogênico Albicans ID2Ò (bioMérieux, France) na identificação de Candida albicans entre 330 amostras de leveduras. As cepas de C. albicans (100) e C. dubliniensis (20) exibiram coloração azul quando semeadas em Albicans ID2Ò. Contudo, a coloração azul também foi verificada em culturas de C. rugosa (30/30) e C. tropicalis (3/50).
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- 2006
30. Epidemiology of Candidemia in Latin America: A Laboratory-Based Survey
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Marcio Nucci, Flavio Queiroz-Telles, Tito Alvarado-Matute, Iris Nora Tiraboschi, Jorge Cortes, Jeannete Zurita, Manuel Guzman-Blanco, Maria Elena Santolaya, Luis Thompson, Jose Sifuentes-Osornio, Juan I Echevarria, Arnaldo L Colombo, and Latin American Invasive Mycosis Network
- Subjects
Pediatrics ,Latin Americans ,age distribution ,Candida parapsilosis ,Epidemiology ,Candida glabrata ,purl.org/pe-repo/ocde/ford#3.03.09 [https] ,molecular epidemiology ,Amphotericin B ,Candida albicans ,fluconazole ,Candida krusei ,Medicine ,Prospective Studies ,Mycosis Infections ,Child ,Fluconazole ,Pichia guilliermondii ,Candida ,Multidisciplinary ,biology ,Incidence ,Incidence (epidemiology) ,Fungal Diseases ,Middle Aged ,amphotericin B ,Infectious Diseases ,Child, Preschool ,Epidemiological Monitoring ,organisms by geographical distribution ,Research Article ,medicine.drug ,prospective study ,Adult ,survival rate ,medicine.medical_specialty ,Adolescent ,Clinical Research Design ,Science ,anidulafungin ,Infectious Disease Epidemiology ,Statistics, Nonparametric ,Mycosis ,South and Central America ,Systemic Mycoses ,Species Specificity ,antifungal susceptibility ,voriconazole ,Humans ,controlled study ,Candida tropicalis ,survival time ,Biology ,outcome assessment ,fungus isolation ,Aged ,Voriconazole ,Survey Research ,Population Biology ,business.industry ,disease association ,candidemia ,Candidemia ,Infant ,biology.organism_classification ,bacterial infections and mycoses ,major clinical study ,Survey Methods ,Latin America ,fungus identification ,incidence ,Anidulafungin ,species distribution ,business ,Demography - Abstract
BackgroundThe epidemiology of candidemia varies depending on the geographic region. Little is known about the epidemiology of candidemia in Latin America.MethodsWe conducted a 24-month laboratory-based survey of candidemia in 20 centers of seven Latin American countries. Incidence rates were calculated and the epidemiology of candidemia was characterized.ResultsAmong 672 episodes of candidemia, 297 (44.2%) occurred in children (23.7% younger than 1 year), 36.2% in adults between 19 and 60 years old and 19.6% in elderly patients. The overall incidence was 1.18 cases per 1,000 admissions, and varied across countries, with the highest incidence in Colombia and the lowest in Chile. Candida albicans (37.6%), C. parapsilosis (26.5%) and C. tropicalis (17.6%) were the leading agents, with great variability in species distribution in the different countries. Most isolates were highly susceptible to fluconazole, voriconazole, amphotericin B and anidulafungin. Fluconazole was the most frequent agent used as primary treatment (65.8%), and the overall 30-day survival was 59.3%.ConclusionsThis first large epidemiologic study of candidemia in Latin America showed a high incidence of candidemia, high percentage of children, typical species distribution, with C. albicans, C. parapsilosis and C. tropicalis accounting for the majority of episodes, and low resistance rates.
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- 2013
31. Bloodstream infections due to Trichosporon spp.: species distribution, Trichosporon asahii genotypes determined on the basis of ribosomal DNA intergenic spacer 1 sequencing, and antifungal susceptibility testing
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Thomas C, Chagas-Neto, Guilherme M, Chaves, Analy S A, Melo, and Arnaldo L, Colombo
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Adult ,Male ,Antifungal Agents ,Adolescent ,Genotype ,Molecular Sequence Data ,Infant, Newborn ,Infant ,Microbial Sensitivity Tests ,Sequence Analysis, DNA ,Mycology ,Middle Aged ,South America ,Mycoses ,Trichosporon ,Child, Preschool ,DNA, Ribosomal Spacer ,Prevalence ,Humans ,Female ,Child ,DNA, Fungal ,Fungemia ,Phylogeny ,Aged - Abstract
The reevaluation of the genus Trichosporon has led to the replacement of the old taxon Trichosporon beigelii by six new species. Sequencing of the ribosomal DNA (rDNA) intergenic spacer 1 (IGS1) is currently mandatory for accurate Trichosporon identification, but it is not usually performed in routine laboratories. Here we describe Trichosporon species distribution and prevalence of Trichosporon asahii genotypes based on rDNA IGS1 sequencing as well as antifungal susceptibility profiles of 22 isolates recovered from blood cultures. The clinical isolates were identified as follows: 15 T. asahii isolates, five Trichosporon asteroides isolates, one Trichosporon coremiiforme isolate, and one Trichosporon dermatis isolate. We found a great diversity of different species causing trichosporonemia, including a high frequency of isolation of T. asteroides from blood cultures that is lower than that of T. asahii only. Regarding T. asahii genotyping, we found that the majority of our isolates belonged to genotype 1 (86.7%). We report the first T. asahii isolate belonging to genotype 4 in South America. Almost 50% of all T. asahii isolates exhibited amphotericin B MICs ofor=2 microg/ml. Caspofungin MICs obtained for all the Trichosporon sp. isolates tested were consistently high (MICsor= 2 microg/ml). Most isolates (87%) had high MICs for 5-flucytosine, but all of them were susceptible to triazoles, markedly to voriconazole (all MICsor= 0.06 microg/ml).
- Published
- 2009
32. Erratum to: Prognostic factors and historical trends in the epidemiology of candidemia in critically ill patients: an analysis of five multicenter studies sequentially conducted over a 9-year period
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Arnaldo L. Colombo, Thais Guimarães, Teresa Sukienik, Alessandro C. Pasqualotto, Ricardo Andreotti, Flavio Queiroz-Telles, Simone A. Nouér, and Marcio Nucci
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Erratum ,Critical Care and Intensive Care Medicine - Published
- 2014
33. EP-129 - TENDÊNCIAS HISTÓRICAS NA PREVALÊNCIA DE LEVEDURAS RARAS ASSOCIADAS À INFECÇÕES DE CORRENTE SANGUÍNEA (ICSS) NO BRASIL - DADOS PRELIMINARES
- Author
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Carolina Palamin Buonafine, Alexander Eduardo dos Santos, Regielly CR Cognialli, Valerio R. Aquino, Caroline Agnelli, Ana VA Mendes, Thais Guimarães, Teresa CT Sukiennik, Elaine C Francisco, and Arnaldo L Colombo
- Subjects
Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Introdução: ICSs causadas por leveduras do gênero Candida ocorrem com alta frequência em nossos hospitais (0,33-6,51 casos por 1.000 admissões) e associam-se a altas taxas de morbidade e mortalidade. Nos últimos anos, notou-se um aumento global na prevalência de espécies raras de Candida (ERC) associadas a ICS, principalmente em pacientes hospitalizados submetidos a procedimentos invasivos, uso antimicrobianos e imunocomprometidos. Tais espécies apresentam peculiaridades de história natural, dificuldades em sua identificação e susceptibilidade a antifúngicos. A prevalência de ERC em episódios de ICSs e seu impacto clínico no Brasil tem sido pouco investigado. Objetivo: Caracterizar a prevalência de leveduras raras em ICS documentadas em um laboratório de referência em Micologia Médica durante 2007-2023. Método: Realizamos o levantamento de prevalência de ERC entre isolados de hemocultura encaminhados para o Laboratório Especial de Micologia, Universidade Federal de São Paulo, entre 2007-2023. Tendências históricas na prevalência de ERC foram avaliadas considerando todas as amostras de leveduras coletadas entre: 2007-2015 (P1) versus 2016-2023 (P2). Taxas de prevalência (P1vs.P2) foram comparadas por qui-quadrado. Valor de p < 0,05 foi considerado. As espécies foram selecionadas com base na identificação realizada por meios cromogênicos, sistemas comerciais ou MALDI-TOF MS. Resultados: Ao todo, 2265 isolados (excluídos amostras repetidas) de diferentes episódios de ICS foram considerados, provenientes de 43 centros médicos de 14 unidades federativas. Como resultado, 188 isolados (8,3%) representativos de ERC foram associados a diferentes episódios de ICSs. Durante o período avaliado, houve uma manutenção nas taxas de prevalência entre os períodos considerados (P1 = 85 raras de 1062 totais, 8%; P2 = 103 raras de 1569 totais, 6,5%; p > 0,05). Ao final, encontramos isolados representantes de 20 ERC com destaque para:Candida (n = 77,40%), Meyerozyma (n = 73,38%), Clavispora (n = 20,10%). Conclusão: Neste estudo preliminar identificamos uma taxa de prevalência de 8,3% de ERC causando episódios de ICS, taxa esta considerada superior àquelas documentadas na Ásia e Oceania.Observou-se tendência de estabilidade nas taxas nos centros médicos avaliados. No entanto, análises futuras serão realizadas. Esses dados ressaltam a relevância de estudos epidemiológicos nacionais para um melhor entendimento sobre a epidemiologia de infecções invasivas por ERC e seu impacto na prática clínica.
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- 2024
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34. Molecular Epidemiology of Agents of Human Chromoblastomycosis in Brazil with the Description of Two Novel Species.
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Renata R Gomes, Vania A Vicente, Conceição M P S de Azevedo, Claudio G Salgado, Moises B da Silva, Flávio Queiroz-Telles, Sirlei G Marques, Daniel W C L Santos, Tania S de Andrade, Elizabeth H Takagi, Katia S Cruz, Gheniffer Fornari, Rosane C Hahn, Maria L Scroferneker, Rachel B Caligine, Mauricio Ramirez-Castrillon, Daniella P de Araújo, Daiane Heidrich, Arnaldo L Colombo, and G S de Hoog
- Subjects
Arctic medicine. Tropical medicine ,RC955-962 ,Public aspects of medicine ,RA1-1270 - Abstract
The human mutilating disease chromoblastomycosis is caused by melanized members of the order Chaetothyriales. To assess population diversity among 123 clinical strains of agents of the disease in Brazil we applied sequencing of the rDNA internal transcribed spacer region, and partial cell division cycle and β-tubulin genes. Strains studied were limited to three clusters divided over the single family Herpotrichiellaceae known to comprise agents of the disease. A Fonsecaea cluster contained the most important agents, among which F. pedrosoi was prevalent with 80% of the total set of strains, followed by 13% for F. monophora, 3% for F. nubica, and a single isolate of F. pugnacius. Additional agents, among which two novel species, were located among members of the genus Rhinocladiella and Cyphellophora, with frequencies of 3% and 1%, respectively.
- Published
- 2016
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35. Earlier diagnosis of invasive fusariosis with Aspergillus serum galactomannan testing.
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Marcio Nucci, Fabianne Carlesse, Paola Cappellano, Andrea G Varon, Adriana Seber, Marcia Garnica, Simone A Nouér, and Arnaldo L Colombo
- Subjects
Medicine ,Science - Abstract
Cross-reactivity of Fusarium species with serum galactomannan antigen (GMI) test has been observed. We sought to evaluate if GMI could help to early diagnose invasive fusariosis and to monitor treatment response. We reviewed the records of all patients with invasive fusariosis between 2008 and 2012 in three Brazilian hospitals. We selected patients who had at least 1 GMI test within 2 days before or after the date of the first clinical manifestation of fusariosis, and analyzed the temporal relationship between the first positive GMI test and the date of the diagnosis of invasive fusariosis, and the kinetics of GMI in relation to patients' response to treatment. We also selected 18 controls to determine the sensitivity and specificity of the test. Among 18 patients, 15 (83%) had at least one positive GMI (median 4, range 1-15). The sensitivity and specificity of was 83% and 67%, respectively. GMI was positive before the diagnosis of invasive fusariosis in 11 of the 15 cases (73%), at a median of 10 days (range 3-39), and after the diagnosis in 4 cases. GMI became negative in 8 of the 15 patients; 3 of these 8 patients (37.5%) were alive 90 days after the diagnosis of fusariosis compared with 2 of 7 (29%) who did not normalize GMI (p = 1.0). GMI is frequently positive in invasive fusariosis, and becomes positive before diagnosis in most patients. These findings may have important implications for the choice of antifungal therapy in settings with high prevalence of invasive fusariosis.
- Published
- 2014
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36. Surveillance of Candida spp bloodstream infections: epidemiological trends and risk factors of death in two Mexican tertiary care hospitals.
- Author
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Dora E Corzo-Leon, Tito Alvarado-Matute, Arnaldo L Colombo, Patricia Cornejo-Juarez, Jorge Cortes, Juan I Echevarria, Manuel Guzman-Blanco, Alejandro E Macias, Marcio Nucci, Luis Ostrosky-Zeichner, Alfredo Ponce-de-Leon, Flavio Queiroz-Telles, Maria E Santolaya, Luis Thompson-Moya, Iris N Tiraboschi, Jeannete Zurita, and Jose Sifuentes-Osornio
- Subjects
Medicine ,Science - Abstract
IntroductionLarger populations at risk, broader use of antibiotics and longer hospital stays have impacted on the incidence of Candida sp. bloodstream infections (CBSI).ObjectiveTo determine clinical and epidemiologic characteristics of patients with CBSI in two tertiary care reference medical institutions in Mexico City.DesignProspective and observational laboratory-based surveillance study conducted from 07/2008 to 06/2010.MethodsAll patients with CBSI were included. Identification and antifungal susceptibility were performed using CLSI M27-A3 standard procedures. Frequencies, Mann-Whitney U test or T test were used as needed. Risk factors were determined with multivariable analysis and binary logistic regression analysis.ResultsCBSI represented 3.8% of nosocomial bloodstream infections. Cumulative incidence was 2.8 per 1000 discharges (incidence rate: 0.38 per 1000 patient-days). C. albicans was the predominant species (46%), followed by C. tropicalis (26%). C. glabrata was isolated from patients with diabetes (50%), and elderly patients. Sixty-four patients (86%) received antifungals. Amphotericin-B deoxycholate (AmBD) was the most commonly used agent (66%). Overall mortality rate reached 46%, and risk factors for death were APACHE II score ≥ 16 (OR = 6.94, CI95% = 2.34-20.58, pConclusionsThe cumulative incidence rate in these centers was higher than other reports from tertiary care hospitals from Latin America. Knowledge of local epidemiologic patterns permits the design of more specific strategies for prevention and preemptive therapy of CBSI.
- Published
- 2014
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