28 results on '"Atsidaftos E"'
Search Results
2. Genotype-phenotype association and variant characterization in Diamond Blackfan anemia caused by pathogenic variants in RPL35A
- Author
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Matthew Gianferante, D. Wlodarski, M.W. Atsidaftos, E. Da Costa, L. Delaporta, P. Farrar, J.E. Goldman, F.D. Hussain, M. Kattamis, A. Leblanc, T. Lipton, J.M. Niemeyer, C.M. Pospisilova, D. Quarello, P. Ramenghi, U. Sankaran, V.G. Vlachos, A. Volejnikova, J. Alter, B.P. Savage, S.A. Giri, N.
- Abstract
Diamond Blackfan anemia (DBA) is predominantly an autosomal dominant inherited red cell aplasia primarily caused by pathogenic germline variants in ribosomal protein genes. DBA due to pathogenic RPL35A variants has been associated with large 3q29 deletions and phenotypes not common in DBA. We conducted a multi-institutional genotypephenotype study of 45 patients with DBA associated with pathogenic RPL35A germline variants and curated the variant data on 21 additional cases from the literature. Genotype-phenotype analyses were conducted comparing patients with large deletions versus all other pathogenic variants in RPL35A. Twenty-two of the 45 cases had large deletions in RPL35A. After adjusting for multiple tests, a statistically significant association was observed between patients with a large deletion and steroid-resistant anemia, neutropenia, craniofacial abnormalities, chronic gastrointestinal problems, and intellectual disabilities (P
- Published
- 2021
3. Inhibition of Wilms' tumor growth by intramuscular administration of tissue inhibitor of metalloproteinases-4 plasmid DNA
- Author
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Çeliker, M Y, Wang, M, Atsidaftos, E, Liu, X, Liu, Y E, Jiang, Y, Valderrama, E, Goldberg, I D, and Shi, Y E
- Published
- 2001
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4. Frameshift mutation in p53 regulator RPL26 is associated with multiple physical abnormalities and a specific pre-ribosomal RNA processing defect in diamond-blackfan anemia
- Author
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Gazda, H.T. Preti, M. Sheen, M.R. O'Donohue, M.-F. Vlachos, A. Davies, S.M. Kattamis, A. Doherty, L. Landowski, M. Buros, C. Ghazvinian, R. Sieff, C.A. Newburger, P.E. Niewiadomska, E. Matysiak, M. Glader, B. Atsidaftos, E. Lipton, J.M. Gleizes, P.-E. Beggs, A.H.
- Abstract
Diamond-Blackfan anemia (DBA) is an inherited form of pure red cell aplasia that usually presents in infancy or early childhood and is associated with congenital malformations in ~30-50% of patients. DBA has been associated with mutations in nine ribosomal protein (RP) genes in about 53% of patients. We completed a large-scale screen of 79 RP genes by sequencing 16 RP genes (RPL3, RPL7, RPL8, RPL10, RPL14, RPL17, RPL19, RPL23A, RPL26, RPL27, RPL35, RPL36A, RPL39, RPS4X, RPS4Y1, and RPS21) in 96 DBA probands. We identified a de novo two-nucleotide deletion in RPL26 in one proband associated with multiple severe physical abnormalities. This mutation gives rise to a remarkable ribosome biogenesis defect that affects maturation of both the small and the large subunits. We also found a deletion in RPL19 and missense mutations in RPL3 and RPL23A, which may be variants of unknown significance. Together with RPL5, RPL11, and RPS7, RPL26 is the fourth RP regulating p53 activity that is linked to DBA. © 2012 Wiley-Liss, Inc.
- Published
- 2012
5. P-083 5q-syndrome or diamond blackfan anemia: The perplexing diagnostic puzzle of red cell aplasia
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Vlachos, A., primary, Farrar, J.E., additional, Atsidaftos, E., additional, Muir, E., additional, Narla, A., additional, Markello, T.C., additional, Singh, S., additional, Blanc, L., additional, Landowski, M., additional, Gazda, H.T., additional, Liu, J.M., additional, Ellis, S.R., additional, Arceci, R.J., additional, Ebert, B.L., additional, Bodine, D.M., additional, and Lipton, J.M., additional
- Published
- 2013
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6. Colorectal cancer screening and surveillance strategy for patients with Diamond Blackfan anemia: Preliminary recommendations from the Diamond Blackfan Anemia Registry.
- Author
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Lipton JM, Molmenti CLS, Hussain M, Desai P, Florento M, Atsidaftos E, and Vlachos A
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- Disease Susceptibility, Early Detection of Cancer, Humans, Middle Aged, Mutation, Registries, Ribosomal Proteins genetics, Anemia, Diamond-Blackfan diagnosis, Anemia, Diamond-Blackfan epidemiology, Anemia, Diamond-Blackfan genetics, Bone Neoplasms, Colorectal Neoplasms diagnosis, Colorectal Neoplasms epidemiology
- Abstract
Diamond Blackfan anemia (DBA) is a rare inherited bone marrow failure syndrome characterized by red cell failure, congenital anomalies, poor linear growth, and cancer predisposition. Two previous analyses from the Diamond Blackfan Anemia Registry have quantified DBA as a cancer predisposition syndrome of moderate cancer penetrance. Patients with DBA have a 4.8-fold higher relative risk of developing cancer with an overall cumulative incidence of 13.7% by age 45 years. The two most prevalent solid tumors are colorectal cancer (CRC) and osteogenic sarcoma. Current and evolving data support the institution of cancer screening and surveillance strategies for CRC in DBA., (© 2021 Wiley Periodicals LLC.)
- Published
- 2021
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7. Genotype-phenotype association and variant characterization in Diamond-Blackfan anemia caused by pathogenic variants in RPL35A .
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Gianferante MD, Wlodarski MW, Atsidaftos E, Da Costa L, Delaporta P, Farrar JE, Goldman FD, Hussain M, Kattamis A, Leblanc T, Lipton JM, Niemeyer CM, Pospisilova D, Quarello P, Ramenghi U, Sankaran VG, Vlachos A, Volejnikova J, Alter BP, Savage SA, and Giri N
- Subjects
- Genetic Association Studies, Humans, Mutation, Phenotype, Ribosomal Proteins genetics, Anemia, Diamond-Blackfan genetics
- Abstract
Diamond Blackfan anemia (DBA) is predominantly an autosomal dominant inherited red cell aplasia primarily caused by pathogenic germline variants in ribosomal protein genes. DBA due to pathogenic RPL35A variants has been associated with large 3q29 deletions and phenotypes not common in DBA. We conducted a multi-institutional genotype-phenotype study of 45 patients with DBA associated with pathogenic RPL35A germline variants and curated the variant data on 21 additional cases from the literature. Genotype-phenotype analyses were conducted comparing patients with large deletions versus all other pathogenic variants in RPL35A. Twenty-two of the 45 cases had large deletions in RPL35A. After adjusting for multiple tests, a statistically significant association was observed between patients with a large deletion and steroid-resistant anemia, neutropenia, craniofacial abnormalities, chronic gastrointestinal problems, and intellectual disabilities (p<0.01) compared with all other pathogenic variants. Non-large deletion pathogenic variants were spread across RPL35A with no apparent hot spot and 56% of the individual family variants were observed more than once. In this, the largest known study of DBA patients with pathogenic RPL35A variants, we determined that patients with large deletions have a more severe phenotype that is clinically different from those with non-large deletion variants. Genes of interest also deleted in the 3q29 region that could be associated with some of these phenotypic features include LMLN and IQCG. Management of DBA due to large RPL35A deletions may be challenging due to complex problems and require comprehensive assessments by multiple specialists including immunologic, gastrointestinal, and developmental evaluations to provide optimal multidisciplinary care.
- Published
- 2021
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8. L-leucine improves anemia and growth in patients with transfusion-dependent Diamond-Blackfan anemia: Results from a multicenter pilot phase I/II study from the Diamond-Blackfan Anemia Registry.
- Author
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Vlachos A, Atsidaftos E, Lababidi ML, Muir E, Rogers ZR, Alhushki W, Bernstein J, Glader B, Gruner B, Hartung H, Knoll C, Loew T, Nalepa G, Narla A, Panigrahi AR, Sieff CA, Walkovich K, Farrar JE, and Lipton JM
- Subjects
- Adolescent, Adult, Anemia, Diamond-Blackfan pathology, Child, Child, Preschool, Combined Modality Therapy, Feasibility Studies, Female, Follow-Up Studies, Humans, Male, Middle Aged, Pilot Projects, Prognosis, Young Adult, Anemia, Diamond-Blackfan therapy, Blood Transfusion methods, Leucine therapeutic use
- Abstract
Background: Diamond-Blackfan anemia (DBA) is an inherited bone marrow failure syndrome characterized by anemia, short stature, congenital anomalies, and cancer predisposition. Most cases are due to mutations in genes encoding ribosomal proteins (RP) leading to RP haploinsufficiency. Effective treatments for the anemia of DBA include chronic red cell transfusions, long-term corticosteroid therapy, or hematopoietic stem cell transplantation. In a small patient series and in animal models, there have been hematologic responses to L-leucine with amelioration of anemia. The study objectives of this clinical trial were to determine feasibility, safety, and efficacy of L-leucine in transfusion-dependent patients with DBA., Procedure: Patients ≥2 years of age received L-leucine 700 mg/m
2 orally three times daily for nine months to determine a hematologic response and any improvement in growth (NCT01362595)., Results: This multicenter, phase I/II study enrolled 55 subjects; 43 were evaluable. There were 21 males; the median age at enrollment was 10.4 years (range, 2.5-46.1 years). No significant adverse events were attributable to L-leucine. Two subjects had a complete erythroid response and five had a partial response. Nine of 25, and 11 of 25, subjects experienced a positive weight and height percentile change, respectively, at the end of therapy., Conclusions: L-leucine is safe, resulted in an erythroid response in 16% of subjects with DBA, and led to an increase in weight and linear growth velocity in 36% and 44% of evaluable subjects, respectively. Further studies will be critical to understand the role of L-leucine in the management of patients with DBA., (© 2020 Wiley Periodicals LLC.)- Published
- 2020
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9. The Genetic Landscape of Diamond-Blackfan Anemia.
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Ulirsch JC, Verboon JM, Kazerounian S, Guo MH, Yuan D, Ludwig LS, Handsaker RE, Abdulhay NJ, Fiorini C, Genovese G, Lim ET, Cheng A, Cummings BB, Chao KR, Beggs AH, Genetti CA, Sieff CA, Newburger PE, Niewiadomska E, Matysiak M, Vlachos A, Lipton JM, Atsidaftos E, Glader B, Narla A, Gleizes PE, O'Donohue MF, Montel-Lehry N, Amor DJ, McCarroll SA, O'Donnell-Luria AH, Gupta N, Gabriel SB, MacArthur DG, Lander ES, Lek M, Da Costa L, Nathan DG, Korostelev AA, Do R, Sankaran VG, and Gazda HT
- Published
- 2019
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10. The Genetic Landscape of Diamond-Blackfan Anemia.
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Ulirsch JC, Verboon JM, Kazerounian S, Guo MH, Yuan D, Ludwig LS, Handsaker RE, Abdulhay NJ, Fiorini C, Genovese G, Lim ET, Cheng A, Cummings BB, Chao KR, Beggs AH, Genetti CA, Sieff CA, Newburger PE, Niewiadomska E, Matysiak M, Vlachos A, Lipton JM, Atsidaftos E, Glader B, Narla A, Gleizes PE, O'Donohue MF, Montel-Lehry N, Amor DJ, McCarroll SA, O'Donnell-Luria AH, Gupta N, Gabriel SB, MacArthur DG, Lander ES, Lek M, Da Costa L, Nathan DG, Korostelev AA, Do R, Sankaran VG, and Gazda HT
- Subjects
- Adolescent, Child, Child, Preschool, Cohort Studies, Exome genetics, Exons genetics, Female, Gene Deletion, Genetic Association Studies methods, Humans, Intercellular Signaling Peptides and Proteins genetics, Male, Mutation genetics, Phenotype, Ribosomal Proteins genetics, Ribosomes genetics, Sequence Analysis, RNA methods, Exome Sequencing methods, Anemia, Diamond-Blackfan genetics
- Abstract
Diamond-Blackfan anemia (DBA) is a rare bone marrow failure disorder that affects 7 out of 1,000,000 live births and has been associated with mutations in components of the ribosome. In order to characterize the genetic landscape of this heterogeneous disorder, we recruited a cohort of 472 individuals with a clinical diagnosis of DBA and performed whole-exome sequencing (WES). We identified relevant rare and predicted damaging mutations for 78% of individuals. The majority of mutations were singletons, absent from population databases, predicted to cause loss of function, and located in 1 of 19 previously reported ribosomal protein (RP)-encoding genes. Using exon coverage estimates, we identified and validated 31 deletions in RP genes. We also observed an enrichment for extended splice site mutations and validated their diverse effects using RNA sequencing in cell lines obtained from individuals with DBA. Leveraging the size of our cohort, we observed robust genotype-phenotype associations with congenital abnormalities and treatment outcomes. We further identified rare mutations in seven previously unreported RP genes that may cause DBA, as well as several distinct disorders that appear to phenocopy DBA, including nine individuals with biallelic CECR1 mutations that result in deficiency of ADA2. However, no new genes were identified at exome-wide significance, suggesting that there are no unidentified genes containing mutations readily identified by WES that explain >5% of DBA-affected case subjects. Overall, this report should inform not only clinical practice for DBA-affected individuals, but also the design and analysis of rare variant studies for heterogeneous Mendelian disorders., (Copyright © 2018 American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2018
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11. Increased risk of colon cancer and osteogenic sarcoma in Diamond-Blackfan anemia.
- Author
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Vlachos A, Rosenberg PS, Atsidaftos E, Kang J, Onel K, Sharaf RN, Alter BP, and Lipton JM
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- Adolescent, Adult, Aged, Child, Female, Humans, Incidence, Male, Middle Aged, Risk Factors, Young Adult, Anemia, Diamond-Blackfan complications, Colonic Neoplasms etiology, Osteosarcoma etiology
- Published
- 2018
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12. Increased Prevalence of Congenital Heart Disease in Children With Diamond Blackfan Anemia Suggests Unrecognized Diamond Blackfan Anemia as a Cause of Congenital Heart Disease in the General Population: A Report of the Diamond Blackfan Anemia Registry.
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Vlachos A, Osorio DS, Atsidaftos E, Kang J, Lababidi ML, Seiden HS, Gruber D, Glader BE, Onel K, Farrar JE, Bodine DM, Aspesi A, Dianzani I, Ramenghi U, Ellis SR, and Lipton JM
- Subjects
- Child, Child, Preschool, Humans, Infant, Newborn, Male, Prevalence, Anemia, Diamond-Blackfan complications, Heart Defects, Congenital epidemiology, Heart Defects, Congenital etiology, Registries, Research Report
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- 2018
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13. Molecular convergence in ex vivo models of Diamond-Blackfan anemia.
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O'Brien KA, Farrar JE, Vlachos A, Anderson SM, Tsujiura CA, Lichtenberg J, Blanc L, Atsidaftos E, Elkahloun A, An X, Ellis SR, Lipton JM, and Bodine DM
- Subjects
- Adolescent, Adult, Anemia, Diamond-Blackfan blood, Anemia, Diamond-Blackfan metabolism, Case-Control Studies, Cell Differentiation genetics, Cell Proliferation genetics, Cells, Cultured, Child, Child, Preschool, Erythroid Cells metabolism, Erythroid Cells pathology, Erythropoiesis genetics, Female, GATA1 Transcription Factor genetics, Genes, Dominant, Genes, X-Linked, Humans, Male, Models, Genetic, Mutation, Ribosomal Proteins genetics, Transcriptome, Young Adult, Anemia, Diamond-Blackfan genetics
- Abstract
Diamond-Blackfan anemia (DBA) is a congenital bone marrow failure syndrome characterized by erythroid hypoplasia, usually without perturbation of other hematopoietic lineages. Approximately 65% of DBA patients with autosomal dominant inheritance have heterozygous mutations or deletions in ribosomal protein (RP) genes while <1% of patients with X-linked inheritance have been identified with mutations in the transcription factor GATA1 Erythroid cells from patients with DBA have not been well characterized, and the mechanisms underlying the erythroid specific effects of either RP or GATA1 associated DBA remain unclear. We have developed an ex vivo culture system to expand peripheral blood CD34
+ progenitor cells from patients with DBA and differentiate them into erythroid cells. Cells from patients with RP or GATA1 mutations showed decreased proliferation and delayed erythroid differentiation in comparison with controls. RNA transcript analyses of erythroid cells from controls and patients with RP or GATA1 mutations showed distinctive differences, with upregulation of heme biosynthesis genes prominently in RP-mediated DBA and failure to upregulate components of the translational apparatus in GATA1 -mediated DBA. Our data show that dysregulation of translation is a common feature of DBA caused by both RP and GATA1 mutations. This trial was registered at www.clinicaltrials.gov as #NCT00106015.- Published
- 2017
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14. Endocrine Dysfunction in Diamond-Blackfan Anemia (DBA): A Report from the DBA Registry (DBAR).
- Author
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Lahoti A, Harris YT, Speiser PW, Atsidaftos E, Lipton JM, and Vlachos A
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- Adolescent, Adult, Anemia, Diamond-Blackfan therapy, Blood Transfusion, Child, Child, Preschool, Female, Glucocorticoids therapeutic use, Humans, Infant, Male, Pilot Projects, Prevalence, Registries, Retrospective Studies, Young Adult, Anemia, Diamond-Blackfan complications, Endocrine System Diseases epidemiology, Endocrine System Diseases etiology
- Abstract
Background: Diamond-Blackfan anemia (DBA) is a rare inherited bone marrow failure syndrome. The mainstays of treatment involve chronic red cell transfusions, long-term glucocorticoid therapy, and stem cell transplantation. Systematic data concerning endocrine function in DBA are limited. We studied patients in the DBA Registry (DBAR) of North America to assess the prevalence of various endocrinopathies., Procedure: In a pilot study, retrospective data were collected for 12 patients with DBA. Subsequently, patients with DBA aged 1-39 years were recruited prospectively. Combined, 57 patients were studied; 38 chronically transfused, 12 glucocorticoid-dependent, and seven in remission. Data were collected on anthropometric measurements, systematic screening of pituitary, thyroid, parathyroid, adrenal, pancreatic, and gonadal function, and ferritin levels. Descriptive statistics were tabulated and group differences were assessed., Results: Fifty-three percent of patients had ≥ 1 endocrine disorder, including adrenal insufficiency (32%), hypogonadism (29%), hypothyroidism (14%), growth hormone dysfunction (7%), diabetes mellitus (2%), and/or diabetes insipidus (2%). Ten of the 33 patients with available heights had height standard deviation less than -2. Low 25-hydroxy vitamin D (25(OH)D) levels were present in 50%. A small proportion also had osteopenia, osteoporosis, or hypercalciuria. Most with adrenal insufficiency were glucocorticoid dependent; other endocrinopathies were more common in chronically transfused patients., Conclusions: Endocrine dysfunction is common in DBA, as early as the teenage years. Although prevalence is highest in transfused patients, patients taking glucocorticoids or in remission also have endocrine dysfunction. Longitudinal studies are needed to better understand the etiology and true prevalence of these disorders., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2016
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15. Exploiting pre-rRNA processing in Diamond Blackfan anemia gene discovery and diagnosis.
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Farrar JE, Quarello P, Fisher R, O'Brien KA, Aspesi A, Parrella S, Henson AL, Seidel NE, Atsidaftos E, Prakash S, Bari S, Garelli E, Arceci RJ, Dianzani I, Ramenghi U, Vlachos A, Lipton JM, Bodine DM, and Ellis SR
- Subjects
- Anemia, Diamond-Blackfan genetics, Anemia, Diamond-Blackfan metabolism, Female, Humans, Infant, K562 Cells, Ribosome Subunits, Large, Eukaryotic genetics, Ribosome Subunits, Large, Eukaryotic metabolism, Ribosome Subunits, Small, Eukaryotic genetics, Ribosome Subunits, Small, Eukaryotic metabolism, RNA Precursors genetics, RNA Precursors metabolism, RNA Processing, Post-Transcriptional genetics, RNA, Ribosomal metabolism, Ribosomal Proteins genetics, Ribosomal Proteins metabolism
- Abstract
Diamond Blackfan anemia (DBA), a syndrome primarily characterized by anemia and physical abnormalities, is one among a group of related inherited bone marrow failure syndromes (IBMFS) which share overlapping clinical features. Heterozygous mutations or single-copy deletions have been identified in 12 ribosomal protein genes in approximately 60% of DBA cases, with the genetic etiology unexplained in most remaining patients. Unlike many IBMFS, for which functional screening assays complement clinical and genetic findings, suspected DBA in the absence of typical alterations of the known genes must frequently be diagnosed after exclusion of other IBMFS. We report here a novel deletion in a child that presented such a diagnostic challenge and prompted development of a novel functional assay that can assist in the diagnosis of a significant fraction of patients with DBA. The ribosomal proteins affected in DBA are required for pre-rRNA processing, a process which can be interrogated to monitor steps in the maturation of 40S and 60S ribosomal subunits. In contrast to prior methods used to assess pre-rRNA processing, the assay reported here, based on capillary electrophoresis measurement of the maturation of rRNA in pre-60S ribosomal subunits, would be readily amenable to use in diagnostic laboratories. In addition to utility as a diagnostic tool, we applied this technique to gene discovery in DBA, resulting in the identification of RPL31 as a novel DBA gene., (© 2014 Wiley Periodicals, Inc.)
- Published
- 2014
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16. Novel deletion of RPL15 identified by array-comparative genomic hybridization in Diamond-Blackfan anemia.
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Landowski M, O'Donohue MF, Buros C, Ghazvinian R, Montel-Lehry N, Vlachos A, Sieff CA, Newburger PE, Niewiadomska E, Matysiak M, Glader B, Atsidaftos E, Lipton JM, Beggs AH, Gleizes PE, and Gazda HT
- Subjects
- Comparative Genomic Hybridization, DNA Copy Number Variations, Gene Knockdown Techniques, HeLa Cells, Humans, Mutation, RNA, Ribosomal analysis, RNA, Ribosomal genetics, RNA, Small Interfering, Ribosomal Proteins metabolism, Anemia, Diamond-Blackfan genetics, Gene Deletion, Ribosomal Proteins genetics
- Abstract
Diamond-Blackfan anemia (DBA) is an inherited red blood cell aplasia that usually presents during the first year of life. The main features of the disease are normochromic and macrocytic anemia, reticulocytopenia, and nearly absent erythroid progenitors in the bone marrow. The patients also present with growth retardation and craniofacial, upper limb, heart and urinary system congenital malformations in ~30-50 % of cases. The disease has been associated with point mutations and large deletions in ten ribosomal protein (RP) genes RPS19, RPS24, RPS17, RPL35A, RPL5, RPL11, RPS7, RPS10, RPS26, and RPL26 and GATA1 in about 60-65 % of patients. Here, we report a novel large deletion in RPL15, a gene not previously implicated to be causative in DBA. Like RPL26, RPL15 presents the distinctive feature of being required both for 60S subunit formation and for efficient cleavage of the internal transcribed spacer 1. In addition, we detected five deletions in RP genes in which mutations have been previously shown to cause DBA: one each in RPS19, RPS24, and RPS26, and two in RPS17. Pre-ribosomal RNA processing was affected in cells established from the patients bearing these deletions, suggesting a possible molecular basis for their pathological effect. These data identify RPL15 as a new gene involved in DBA and further support the presence of large deletions in RP genes in DBA patients.
- Published
- 2013
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17. Diminutive somatic deletions in the 5q region lead to a phenotype atypical of classical 5q- syndrome.
- Author
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Vlachos A, Farrar JE, Atsidaftos E, Muir E, Narla A, Markello TC, Singh SA, Landowski M, Gazda HT, Blanc L, Liu JM, Ellis SR, Arceci RJ, Ebert BL, Bodine DM, and Lipton JM
- Subjects
- Adolescent, Anemia, Diamond-Blackfan diagnosis, Anemia, Macrocytic diagnosis, Anemia, Macrocytic drug therapy, Child, Preschool, Chromosome Deletion, Chromosomes, Human, Pair 5 genetics, Female, Genotype, Humans, Immunologic Factors therapeutic use, Lenalidomide, Phenotype, Polymorphism, Single Nucleotide, Real-Time Polymerase Chain Reaction, Thalidomide analogs & derivatives, Thalidomide therapeutic use, Anemia, Diamond-Blackfan genetics, Anemia, Macrocytic genetics, Cytogenetic Analysis methods, Ribosomal Proteins genetics
- Abstract
Classical 5q- syndrome is an acquired macrocytic anemia of the elderly. Similar to Diamond Blackfan anemia (DBA), an inherited red cell aplasia, the bone marrow is characterized by a paucity of erythroid precursors. RPS14 deletions in combination with other deletions in the region have been implicated as causative of the 5q- syndrome phenotype. We asked whether smaller, less easily detectable deletions could account for a syndrome with a modified phenotype. We employed single-nucleotide polymorphism array genotyping to identify small deletions in patients diagnosed with DBA and other anemias lacking molecular diagnoses. Diminutive mosaic deletions involving RPS14 were identified in a 5-year-old patient with nonclassical DBA and in a 17-year-old patient with myelodysplastic syndrome. Patients with nonclassical DBA and other hypoproliferative anemias may have somatically acquired 5q deletions with RPS14 haploinsufficiency not identified by fluorescence in situ hybridization or cytogenetic testing, thus refining the spectrum of disorders with 5q- deletions.
- Published
- 2013
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18. Frameshift mutation in p53 regulator RPL26 is associated with multiple physical abnormalities and a specific pre-ribosomal RNA processing defect in diamond-blackfan anemia.
- Author
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Gazda HT, Preti M, Sheen MR, O'Donohue MF, Vlachos A, Davies SM, Kattamis A, Doherty L, Landowski M, Buros C, Ghazvinian R, Sieff CA, Newburger PE, Niewiadomska E, Matysiak M, Glader B, Atsidaftos E, Lipton JM, Gleizes PE, and Beggs AH
- Subjects
- Blotting, Northern, Blotting, Western, HeLa Cells, Humans, RNA, Small Interfering, Ribosomal Protein L3, Ribosomal Proteins genetics, Tumor Suppressor Protein p53 genetics, Abnormalities, Multiple genetics, Anemia, Diamond-Blackfan genetics, Anemia, Diamond-Blackfan metabolism, Frameshift Mutation genetics, RNA, Ribosomal genetics, Ribosomal Proteins metabolism, Tumor Suppressor Protein p53 metabolism
- Abstract
Diamond-Blackfan anemia (DBA) is an inherited form of pure red cell aplasia that usually presents in infancy or early childhood and is associated with congenital malformations in ∼30-50% of patients. DBA has been associated with mutations in nine ribosomal protein (RP) genes in about 53% of patients. We completed a large-scale screen of 79 RP genes by sequencing 16 RP genes (RPL3, RPL7, RPL8, RPL10, RPL14, RPL17, RPL19, RPL23A, RPL26, RPL27, RPL35, RPL36A, RPL39, RPS4X, RPS4Y1, and RPS21) in 96 DBA probands. We identified a de novo two-nucleotide deletion in RPL26 in one proband associated with multiple severe physical abnormalities. This mutation gives rise to a remarkable ribosome biogenesis defect that affects maturation of both the small and the large subunits. We also found a deletion in RPL19 and missense mutations in RPL3 and RPL23A, which may be variants of unknown significance. Together with RPL5, RPL11, and RPS7, RPL26 is the fourth RP regulating p53 activity that is linked to DBA., (© 2012 Wiley-Liss, Inc.)
- Published
- 2012
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19. Incidence of neoplasia in Diamond Blackfan anemia: a report from the Diamond Blackfan Anemia Registry.
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Vlachos A, Rosenberg PS, Atsidaftos E, Alter BP, and Lipton JM
- Subjects
- Adolescent, Adult, Aged, Anemia, Aplastic, Bone Marrow Diseases, Bone Marrow Failure Disorders, Child, Child, Preschool, Comorbidity, Female, Follow-Up Studies, Hemoglobinuria, Paroxysmal therapy, Humans, Incidence, Infant, Male, Middle Aged, Risk Factors, Young Adult, Anemia, Diamond-Blackfan mortality, Anemia, Diamond-Blackfan therapy, Bone Marrow Transplantation, Hemoglobinuria, Paroxysmal mortality, Neoplasms mortality, Registries statistics & numerical data
- Abstract
Diamond Blackfan anemia (DBA) is an inherited bone marrow failure syndrome characterized by red cell aplasia and congenital anomalies. A predisposition to cancer has been suggested but not quantified by case reports. The DBA Registry of North America (DBAR) is the largest established DBA patient cohort, with prospective follow-up since 1991. This report presents the first quantitative assessment of cancer incidence in DBA. Among 608 patients with 9458 person-years of follow-up, 15 solid tumors, 2 acute myeloid leukemias, and 2 cases of myelodysplastic syndrome were diagnosed at a median age of 41 years in patients who had not received a bone marrow transplant. Cancer incidence in DBA was significantly elevated. The observed-to- expected ratio for all cancers combined was 5.4 (P < .05); significant observed-to-expected ratios were 287 for myelodysplastic syndrome, 28 for acute myeloid leukemia, 36 for colon carcinoma, 33 for osteogenic sarcoma, and 12 for female genital cancers. The median survival was 56 years, and the cumulative incidence of solid tumor/leukemia was approximately 20% by age 46 years. As in Fanconi anemia and dyskeratosis congenita, DBA is both an inherited bone marrow failure syndrome and a cancer predisposition syndrome; cancer risks appear lower in DBA than in Fanconi anemia or dyskeratosis congenita. This trial was registered at www.clinicaltrials.gov as #NCT00106015.
- Published
- 2012
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20. Ribosomal protein gene deletions in Diamond-Blackfan anemia.
- Author
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Farrar JE, Vlachos A, Atsidaftos E, Carlson-Donohoe H, Markello TC, Arceci RJ, Ellis SR, Lipton JM, and Bodine DM
- Subjects
- Blotting, Northern, Child, Preschool, Female, Gene Expression Profiling, Genome-Wide Association Study methods, Genotyping Techniques methods, Haploinsufficiency, Humans, Infant, Infant, Newborn, Male, Oligonucleotide Array Sequence Analysis, Polymorphism, Single Nucleotide, Reverse Transcriptase Polymerase Chain Reaction, Anemia, Diamond-Blackfan genetics, Gene Deletion, Ribosomal Proteins genetics
- Abstract
Diamond-Blackfan anemia (DBA) is a congenital BM failure syndrome characterized by hypoproliferative anemia, associated physical abnormalities, and a predisposition to cancer. Perturbations of the ribosome appear to be critically important in DBA; alterations in 9 different ribosomal protein genes have been identified in multiple unrelated families, along with rarer abnormalities of additional ribosomal proteins. However, at present, only 50% to 60% of patients have an identifiable genetic lesion by ribosomal protein gene sequencing. Using genome-wide single-nucleotide polymorphism array to evaluate for regions of recurrent copy variation, we identified deletions at known DBA-related ribosomal protein gene loci in 17% (9 of 51) of patients without an identifiable mutation, including RPS19, RPS17, RPS26, and RPL35A. No recurrent regions of copy variation at novel loci were identified. Because RPS17 is a duplicated gene with 4 copies in a diploid genome, we demonstrate haploinsufficient RPS17 expression and a small subunit ribosomal RNA processing abnormality in patients harboring RPS17 deletions. Finally, we report the novel identification of variable mosaic loss involving known DBA gene regions in 3 patients from 2 kindreds. These data suggest that ribosomal protein gene deletion is more common than previously suspected and should be considered a component of the initial genetic evaluation in cases of suspected DBA.
- Published
- 2011
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21. The ribosomal basis of Diamond-Blackfan Anemia: mutation and database update.
- Author
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Boria I, Garelli E, Gazda HT, Aspesi A, Quarello P, Pavesi E, Ferrante D, Meerpohl JJ, Kartal M, Da Costa L, Proust A, Leblanc T, Simansour M, Dahl N, Fröjmark AS, Pospisilova D, Cmejla R, Beggs AH, Sheen MR, Landowski M, Buros CM, Clinton CM, Dobson LJ, Vlachos A, Atsidaftos E, Lipton JM, Ellis SR, Ramenghi U, and Dianzani I
- Subjects
- Anemia, Diamond-Blackfan diagnosis, Base Sequence, Genetic Association Studies, Humans, Molecular Sequence Data, Mutagenesis genetics, Ribosomal Proteins genetics, Anemia, Diamond-Blackfan genetics, Databases, Genetic, Mutation genetics, Ribosomes genetics
- Abstract
Diamond-Blackfan Anemia (DBA) is characterized by a defect of erythroid progenitors and, clinically, by anemia and malformations. DBA exhibits an autosomal dominant pattern of inheritance with incomplete penetrance. Currently nine genes, all encoding ribosomal proteins (RP), have been found mutated in approximately 50% of patients. Experimental evidence supports the hypothesis that DBA is primarily the result of defective ribosome synthesis. By means of a large collaboration among six centers, we report here a mutation update that includes nine genes and 220 distinct mutations, 56 of which are new. The DBA Mutation Database now includes data from 355 patients. Of those where inheritance has been examined, 125 patients carry a de novo mutation and 72 an inherited mutation. Mutagenesis may be ascribed to slippage in 65.5% of indels, whereas CpG dinucleotides are involved in 23% of transitions. Using bioinformatic tools we show that gene conversion mechanism is not common in RP genes mutagenesis, notwithstanding the abundance of RP pseudogenes. Genotype-phenotype analysis reveals that malformations are more frequently associated with mutations in RPL5 and RPL11 than in the other genes. All currently reported DBA mutations together with their functional and clinical data are included in the DBA Mutation Database., (© 2010 Wiley-Liss, Inc.)
- Published
- 2010
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22. Ribosomal protein genes RPS10 and RPS26 are commonly mutated in Diamond-Blackfan anemia.
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Doherty L, Sheen MR, Vlachos A, Choesmel V, O'Donohue MF, Clinton C, Schneider HE, Sieff CA, Newburger PE, Ball SE, Niewiadomska E, Matysiak M, Glader B, Arceci RJ, Farrar JE, Atsidaftos E, Lipton JM, Gleizes PE, and Gazda HT
- Subjects
- Base Sequence, Humans, RNA Processing, Post-Transcriptional, Anemia, Diamond-Blackfan genetics, Mutation genetics, Ribosomal Proteins genetics
- Abstract
Diamond-Blackfan anemia (DBA), an inherited bone marrow failure syndrome characterized by anemia that usually presents before the first birthday or in early childhood, is associated with birth defects and an increased risk of cancer. Although anemia is the most prominent feature of DBA, the disease is also characterized by growth retardation and congenital malformations, in particular craniofacial, upper limb, heart, and urinary system defects that are present in approximately 30%-50% of patients. DBA has been associated with mutations in seven ribosomal protein (RP) genes, RPS19, RPS24, RPS17, RPL35A, RPL5, RPL11, and RPS7, in about 43% of patients. To continue our large-scale screen of RP genes in a DBA population, we sequenced 35 ribosomal protein genes, RPL15, RPL24, RPL29, RPL32, RPL34, RPL9, RPL37, RPS14, RPS23, RPL10A, RPS10, RPS12, RPS18, RPL30, RPS20, RPL12, RPL7A, RPS6, RPL27A, RPLP2, RPS25, RPS3, RPL41, RPL6, RPLP0, RPS26, RPL21, RPL36AL, RPS29, RPL4, RPLP1, RPL13, RPS15A, RPS2, and RPL38, in our DBA patient cohort of 117 probands. We identified three distinct mutations of RPS10 in five probands and nine distinct mutations of RPS26 in 12 probands. Pre-rRNA analysis in lymphoblastoid cells from patients bearing mutations in RPS10 and RPS26 showed elevated levels of 18S-E pre-rRNA. This accumulation is consistent with the phenotype observed in HeLa cells after knockdown of RPS10 or RPS26 expression with siRNAs, which indicates that mutations in the RPS10 and RPS26 genes in DBA patients affect the function of the proteins in rRNA processing., (Copyright (c) 2010 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.)
- Published
- 2010
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23. Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients.
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Gazda HT, Sheen MR, Vlachos A, Choesmel V, O'Donohue MF, Schneider H, Darras N, Hasman C, Sieff CA, Newburger PE, Ball SE, Niewiadomska E, Matysiak M, Zaucha JM, Glader B, Niemeyer C, Meerpohl JJ, Atsidaftos E, Lipton JM, Gleizes PE, and Beggs AH
- Subjects
- Humans, Ribosome Subunits, Large genetics, Ribosome Subunits, Small genetics, Anemia, Diamond-Blackfan genetics, Cleft Palate genetics, Mutation, Ribosomal Proteins genetics, Thumb abnormalities
- Abstract
Diamond-Blackfan anemia (DBA), a congenital bone-marrow-failure syndrome, is characterized by red blood cell aplasia, macrocytic anemia, clinical heterogeneity, and increased risk of malignancy. Although anemia is the most prominent feature of DBA, the disease is also characterized by growth retardation and congenital anomalies that are present in approximately 30%-50% of patients. The disease has been associated with mutations in four ribosomal protein (RP) genes, RPS19, RPS24, RPS17, and RPL35A, in about 30% of patients. However, the genetic basis of the remaining 70% of cases is still unknown. Here, we report the second known mutation in RPS17 and probable pathogenic mutations in three more RP genes, RPL5, RPL11, and RPS7. In addition, we identified rare variants of unknown significance in three other genes, RPL36, RPS15, and RPS27A. Remarkably, careful review of the clinical data showed that mutations in RPL5 are associated with multiple physical abnormalities, including craniofacial, thumb, and heart anomalies, whereas isolated thumb malformations are predominantly present in patients carrying mutations in RPL11. We also demonstrate that mutations of RPL5, RPL11, or RPS7 in DBA cells is associated with diverse defects in the maturation of ribosomal RNAs in the large or the small ribosomal subunit production pathway, expanding the repertoire of ribosomal RNA processing defects associated with DBA.
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- 2008
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24. Abnormalities of the large ribosomal subunit protein, Rpl35a, in Diamond-Blackfan anemia.
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Farrar JE, Nater M, Caywood E, McDevitt MA, Kowalski J, Takemoto CM, Talbot CC Jr, Meltzer P, Esposito D, Beggs AH, Schneider HE, Grabowska A, Ball SE, Niewiadomska E, Sieff CA, Vlachos A, Atsidaftos E, Ellis SR, Lipton JM, Gazda HT, and Arceci RJ
- Subjects
- Amino Acid Sequence, Anemia, Diamond-Blackfan metabolism, Anemia, Diamond-Blackfan pathology, Apoptosis genetics, Base Sequence, Case-Control Studies, Cell Line, Cell Proliferation, Chromosome Deletion, Chromosome Mapping, Chromosomes, Human, Pair 3 genetics, Cohort Studies, DNA genetics, Female, Humans, Infant, Male, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Pedigree, RNA Processing, Post-Transcriptional, RNA, Small Interfering genetics, Ribosomal Proteins metabolism, Ribosomes metabolism, Anemia, Diamond-Blackfan genetics, Mutation, Ribosomal Proteins genetics
- Abstract
Diamond-Blackfan anemia (DBA) is an inherited bone marrow failure syndrome characterized by anemia, congenital abnormalities, and cancer predisposition. Small ribosomal subunit genes RPS19, RPS24, and RPS17 are mutated in approximately one-third of patients. We used a candidate gene strategy combining high-resolution genomic mapping and gene expression microarray in the analysis of 2 DBA patients with chromosome 3q deletions to identify RPL35A as a potential DBA gene. Sequence analysis of a cohort of DBA probands confirmed involvement RPL35A in DBA. shRNA inhibition shows that Rpl35a is essential for maturation of 28S and 5.8S rRNAs, 60S subunit biogenesis, normal proliferation, and cell survival. Analysis of pre-rRNA processing in primary DBA lymphoblastoid cell lines demonstrated similar alterations of large ribosomal subunit rRNA in both RPL35A-mutated and some RPL35A wild-type patients, suggesting additional large ribosomal subunit gene defects are likely present in some cases of DBA. These data demonstrate that alterations of large ribosomal subunit proteins cause DBA and support the hypothesis that DBA is primarily the result of altered ribosomal function. The results also establish that haploinsufficiency of large ribosomal subunit proteins contributes to bone marrow failure and potentially cancer predisposition.
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- 2008
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25. Diagnosing and treating Diamond Blackfan anaemia: results of an international clinical consensus conference.
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Vlachos A, Ball S, Dahl N, Alter BP, Sheth S, Ramenghi U, Meerpohl J, Karlsson S, Liu JM, Leblanc T, Paley C, Kang EM, Leder EJ, Atsidaftos E, Shimamura A, Bessler M, Glader B, and Lipton JM
- Subjects
- Adult, Anemia, Diamond-Blackfan complications, Anemia, Diamond-Blackfan genetics, Child, Congenital Abnormalities etiology, Diagnosis, Differential, Erythrocyte Transfusion, Female, Genetic Predisposition to Disease, Glucocorticoids therapeutic use, Hematopoietic Stem Cell Transplantation, Humans, Neoplasms etiology, Pregnancy, Pregnancy Complications, Hematologic therapy, Treatment Outcome, Anemia, Diamond-Blackfan diagnosis, Anemia, Diamond-Blackfan therapy
- Abstract
Diamond Blackfan anaemia (DBA) is a rare, genetically and clinically heterogeneous, inherited red cell aplasia. Classical DBA affects about seven per million live births and presents during the first year of life. However, as mutated genes have been discovered in DBA, non-classical cases with less distinct phenotypes are being described in adults as well as children. In caring for these patients it is often difficult to have a clear understanding of the treatment options and their outcomes because of the lack of complete information on the natural history of the disease. The purpose of this document is to review the criteria for diagnosis, evaluate the available treatment options, including corticosteroid and transfusion therapies and stem cell transplantation, and propose a plan for optimizing patient care. Congenital anomalies, mode of inheritance, cancer predisposition, and pregnancy in DBA are also reviewed. Evidence-based conclusions will be made when possible; however, as in many rare diseases, the data are often anecdotal and the recommendations are based upon the best judgment of experienced clinicians. The recommendations regarding the diagnosis and management described in this report are the result of deliberations and discussions at an international consensus conference.
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- 2008
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26. Ribosomal protein S24 gene is mutated in Diamond-Blackfan anemia.
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Gazda HT, Grabowska A, Merida-Long LB, Latawiec E, Schneider HE, Lipton JM, Vlachos A, Atsidaftos E, Ball SE, Orfali KA, Niewiadomska E, Da Costa L, Tchernia G, Niemeyer C, Meerpohl JJ, Stahl J, Schratt G, Glader B, Backer K, Wong C, Nathan DG, Beggs AH, and Sieff CA
- Subjects
- Alternative Splicing, Base Sequence, Bone Marrow Cells cytology, Bone Marrow Cells physiology, Case-Control Studies, Cells, Cultured, Female, Gene Expression Regulation, Genetic Linkage, Humans, Male, Molecular Sequence Data, Reference Values, Ribosomal Proteins metabolism, Ribosomes genetics, Ribosomes metabolism, Anemia, Diamond-Blackfan genetics, Mutation, Ribosomal Proteins genetics
- Abstract
Diamond-Blackfan anemia (DBA) is a rare congenital red-cell aplasia characterized by anemia, bone-marrow erythroblastopenia, and congenital anomalies and is associated with heterozygous mutations in the ribosomal protein (RP) S19 gene (RPS19) in approximately 25% of probands. We report identification of de novo nonsense and splice-site mutations in another RP, RPS24 (encoded by RPS24 [10q22-q23]) in approximately 2% of RPS19 mutation-negative probands. This finding strongly suggests that DBA is a disorder of ribosome synthesis and that mutations in other RP or associated genes that lead to disrupted ribosomal biogenesis and/or function may also cause DBA.
- Published
- 2006
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27. Improving clinical care and elucidating the pathophysiology of Diamond Blackfan anemia: an update from the Diamond Blackfan Anemia Registry.
- Author
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Lipton JM, Atsidaftos E, Zyskind I, and Vlachos A
- Subjects
- Adolescent, Adult, Anemia, Diamond-Blackfan epidemiology, Anemia, Diamond-Blackfan genetics, Child, Preschool, Erythropoiesis genetics, Female, Hematopoietic Stem Cell Transplantation, Humans, Male, Middle Aged, Molecular Epidemiology, Registries, Survival Rate, Treatment Outcome, Anemia, Diamond-Blackfan physiopathology, Anemia, Diamond-Blackfan therapy
- Abstract
Diamond Blackfan anemia (DBA) is a heterogeneous genetic disorder characterized by red cell aplasia, congenital anomalies, and a predisposition to cancer. Although incompletely understood, the erythroid failure in DBA appears to result from the accelerated apoptosis of affected erythroid progenitors/precursors. One of what appears to be multiple DBA genes, coding for a ribosomal protein RPS 19, has been cloned. Even within multiplex families individuals may vary dramatically as to the degree of anemia, response to treatment and the presence of congenital anomalies. The Diamond Blackfan Anemia Registry (DBAR), a comprehensive database of pediatric and adult patients with DBA who are enrolled after informed consent, was designed to overcome two significant obstacles encountered in the study of a rare disease; the reporting bias inherent in the literature and the lack of an active patient database. To enroll, patients, their families and their physicians complete a detailed questionnaire. A review of medical records and telephone interviews are performed to complete and clarify the information provided. As of May 1, 2005, 420 patients have been enrolled in the DBAR. Epidemiological, clinical, and laboratory data have been collected and analyzed. The DBAR has provided new information on the clinical presentation, outcome and genetics of DBA as well as a better description of congenital malformations and cancer predisposition. This has resulted both in improved clinical care of patients with DBA as well as providing new insights into the pathophysiology of this complex disorder.
- Published
- 2006
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28. RNA and protein evidence for haplo-insufficiency in Diamond-Blackfan anaemia patients with RPS19 mutations.
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Gazda HT, Zhong R, Long L, Niewiadomska E, Lipton JM, Ploszynska A, Zaucha JM, Vlachos A, Atsidaftos E, Viskochil DH, Niemeyer CM, Meerpohl JJ, Rokicka-Milewska R, Pospisilova D, Wiktor-Jedrzejczak W, Nathan DG, Beggs AH, and Sieff CA
- Subjects
- Anemia, Diamond-Blackfan metabolism, Antigens, CD34 analysis, Bone Marrow Cells metabolism, DNA Mutational Analysis methods, DNA, Complementary genetics, Haplotypes, Humans, Pedigree, RNA, Messenger genetics, Reverse Transcriptase Polymerase Chain Reaction methods, Ribosomal Proteins metabolism, Anemia, Diamond-Blackfan genetics, Mutation, Ribosomal Proteins genetics
- Abstract
The genetic basis of Diamond-Blackfan anaemia (DBA), a congenital erythroid hypoplasia that shows marked clinical heterogeneity, remains obscure. However, the fact that nearly one-quarter of patients harbour a variety of mutations in RPS19, a ribosomal protein gene, provides an opportunity to examine whether haplo-insufficiency of RPS19 protein can be demonstrated in certain cases. To that end, we identified 19 of 81 DBA index cases, both familial and sporadic, with RPS19 mutations. We found 14 distinct insertions, deletions, missense, nonsense and splice site mutations in the 19 probands, and studied mutations in 10 patients at the RNA level and in three patients at the protein level. Characterization of the mutations in 10 probands, including six with novel insertions, nonsense and splice site mutations, showed that the abnormal transcript was detectable in nine cases. The RPS19 mRNA and protein in CD34+ bone marrow cells identified haplo-insufficiency in three cases predicted to have one functional allele. Our data support the notion that, in addition to rare DBA patients with the deletion of one allele, the disease in certain other RPS19 mutant patients is because of RPS19 protein haplo-insufficiency., (Copyright 2004 Blackwell Publishing Ltd)
- Published
- 2004
- Full Text
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