104 results on '"Ayata M"'
Search Results
2. Towards a Photonic Integrated Linear Algebra Processor for Complex Matrix Multiplication and Inversion
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Cheng, Q, Chen, M, Ayata, M, Holm, M, and Penty, R
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Computer Science::Hardware Architecture - Abstract
We propose the first on-chip optical linear algebra processor for complex-valued matrix multiplication and inversion, incorporating III-V gain blocks. Architecture properties and design considerations are discussed, with numerical analyses showing its superiority over electronic processors.
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- 2021
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3. Çakal Kavunu (Cucumis melo var. agrestis Naudin)'nun Kimyasal Mücadelesi Üzerine Araştırmalar.
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AYATA, M. Uğurcan and UYGUR, F. Nezihi
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WEED control ,MUSKMELON ,HERBICIDES ,WEEDS ,HERBICIDE application ,MELONS ,CROPS - Abstract
Copyright of Turkish Journal of Weed Science is the property of Gaziosmanpasa Universitesi Matbaasi, Department of Plant Protection, Faculty of Agriculture and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2022
4. Optimization of Plasmonic-Organic Hybrid Electro-Optics
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Robinson, B. H., primary, Salamin, Y., additional, Baeuerle, B., additional, Josten, A., additional, Ayata, M., additional, Koch, U., additional, Leuthold, J., additional, Dalton, L. R., additional, Johnson, L. E., additional, Elder, D. L., additional, Kocherzhenko, A. A., additional, Isborn, C. M., additional, Haffner, C., additional, Heni, W., additional, Hoessbacher, C., additional, and Fedoryshyn, Y., additional
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- 2018
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5. All-Plasmonic IQ Modulator with $36\ \mu\mathrm{m}$ Fiber-to-Fiber Pitch
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Ayata, M., primary, Fedoryshyn, Y., additional, Heni, W., additional, Josten, A., additional, Baeuerle, B., additional, Haffner, C., additional, Hoessbacher, C., additional, Koch, U., additional, Salamin, Y., additional, Elder, D. L., additional, Dalton, L. R., additional, and Leuthold, J., additional
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- 2018
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6. Plasmonic interconnects - a dense and fast interconnect solution
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Leuthold, J., primary, Hoessbacher, C., additional, Heni, W., additional, Haffner, C., additional, Salamin, Y., additional, Koch, U., additional, Ayata, M., additional, Fedoryshyn, Y., additional, Baeuerle, B., additional, Josten, A., additional, Elder, D. L., additional, and Dalton, L. R., additional
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- 2017
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7. Perfect Vertical Grating Coupler with Directionality of 97% on a Standard SOI Platform
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Watanabe, T., primary, Ayata, M., additional, Koch, U., additional, Fedoryshyn, Y., additional, and Leuthold, J., additional
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- 2017
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8. Vertical Metallic Grating Couplers Enabling Direct Access to Plasmonic Devices
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Ayata, M., primary, Fedoryshyn, Y., additional, Hoessbacher, C., additional, and Leuthold, J., additional
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- 2017
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9. Establishment of an unfed strain of Paramecium bursaria and analysis of associated bacterial communities controlling its proliferation
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Eiko Himi, Tohru Miyoshi-Akiyama, Yuri Matsushima, Iru Shiono, Seiji Aragane, Yui Hirano, Gaku Ikeda, Yuki Kitaura, Kyohei Kobayashi, Daichi Konno, Ayata Morohashi, Yui Noguchi, Yuka Ominato, Soma Shinbo, Naruya Suzuki, Kurama Takatsuka, Hitomi Tashiro, Yoki Yamada, Kenya Yamashita, Natsumi Yoshino, Masaharu Kitashima, Susumu Kotani, Kazuhito Inoue, Akiya Hino, and Hiroshi Hosoya
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Paramecium bursaria ,symbiosis ,symbiotic algae ,bacteria ,unfed strain ,protist ,Microbiology ,QR1-502 - Abstract
The ciliate Paramecium bursaria harbors several hundred symbiotic algae in its cell and is widely used as an experimental model for studying symbiosis between eukaryotic cells. Currently, various types of bacteria and eukaryotic microorganisms are used as food for culturing P. bursaria; thus, the cultivation conditions are not uniform among researchers. To unify cultivation conditions, we established cloned, unfed strains that can be cultured using only sterile medium without exogenous food. The proliferation of these unfed strains was suppressed in the presence of antibiotics, suggesting that bacteria are required for the proliferation of the unfed strains. Indeed, several kinds of bacteria, such as Burkholderiales, Rhizobiales, Rhodospirillales, and Sphingomonadales, which are able to fix atmospheric nitrogen and/or degrade chemical pollutants, were detected in the unfed strains. The genetic background of the individually cloned, unfed strains were the same, but the proliferation curves of the individual P. bursaria strains were very diverse. Therefore, we selected multiple actively and poorly proliferating individual strains and compared the bacterial composition among the individual strains using 16S rDNA sequencing. The results showed that the bacterial composition among actively proliferating P. bursaria strains was highly homologous but different to poorly proliferating strains. Using unfed strains, the cultivation conditions applied in different laboratories can be unified, and symbiosis research on P. bursaria will make great progress.
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- 2023
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10. Soluble G protein of respiratory syncytial virus inhibits Toll-like receptor 3/4-mediated IFN-beta induction
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Shingai, M., primary, Azuma, M., additional, Ebihara, T., additional, Sasai, M., additional, Funami, K., additional, Ayata, M., additional, Ogura, H., additional, Tsutsumi, H., additional, Matsumoto, M., additional, and Seya, T., additional
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- 2008
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11. Epithelioid trophoblastic tumor (ETT) initially interpreted as cervical cancer
- Author
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Narita, F., primary, Takeuchi, K., additional, Hamana, S., additional, Ohbayashi, C., additional, Ayata, M., additional, and Maruo, T., additional
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- 2003
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12. Functional analysis of matrix proteins expressed from cloned genes of measles virus variants that cause subacute sclerosing panencephalitis reveals a common defect in nucleocapsid binding
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Hirano, A, primary, Ayata, M, additional, Wang, A H, additional, and Wong, T C, additional
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- 1993
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13. Role of biased hypermutation in evolution of subacute sclerosing panencephalitis virus from progenitor acute measles virus
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Wong, T C, primary, Ayata, M, additional, Ueda, S, additional, and Hirano, A, additional
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- 1991
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14. Immunohistochemical determination of immunosuppressive acidic protein in reactive and neoplastic diseases of macrophage.
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Aozasa, Katsuyuki, Ueda, Takafumi, Ayata, Masahiro, Tsujimoto, Masahiko, Fujita, Masaki Q., Yamamura, Teiichi, Tsujimura, Takahiro, Aozasa, K, Ueda, T, Ayata, M, Tsujimoto, M, Fujita, M Q, Yamamura, T, and Tsujimura, T
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- 1987
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15. Cell surface expression of immature H glycoprotein in measles virus-infected cells
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Ogura, H., Matsunaga, I., Takano, Y., Ning, X., Ayata, M., Tanaka, K., Seto, T., Furukawa, K., Ito, N., and Shingai, M.
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- 2000
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16. Structural defect linked to nonrandom mutations in the matrix gene of biken strain subacute sclerosing panencephalitis virus defined by cDNA cloning and expression of chimeric genes
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Ayata, M, Hirano, A, and Wong, T C
- Abstract
Biken strain, a nonproductive measles viruslike agent isolated from a subacute sclerosing panencephalitis (SSPE) patient, contains a posttranscriptional defect affecting matrix (M) protein. A putative M protein was translated in vitro with RNA from Biken strain-infected cells. A similar protein was detected in vivo by an antiserum against a peptide synthesized from the cloned M gene of Edmonston strain measles virus. By using a novel method, full-length cDNAs of the Biken M gene were selectively cloned. The cloned Biken M gene contained an open reading frame which encoded 8 extra carboxy-terminal amino acid residues and 20 amino acid substitutions predicted to affect both the hydrophobicity and secondary structure of the gene product. The cloned gene was expressed in vitro and in vivo into a 37,500 Mr protein electrophoretically and antigenically distinct from the M protein of Edmonston strain but identical to the M protein in Biken strain-infected cells. Chimeric M proteins synthesized in vitro and in vivo showed that the mutations in the carboxy-proximal region altered the local antigenicity and those in the amino region affected the overall protein conformation. The protein expressed from the Biken M gene was unstable in vivo. Instability was attributed to multiple mutations in both the amino and carboxy regions. A surprising number of mutations in both the coding and noncoding regions of the Biken M gene were identical to those in an independently isolated SSPE virus strain with a similar defect. These results offer insights into the basis of the defect in Biken strain and pose intriguing questions about the evolutionary origins of SSPE viruses in general.
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- 1989
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17. Generalized and localized biased hypermutation affecting the matrix gene of a measles virus strain that causes subacute sclerosing panencephalitis
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Wong, T C, Ayata, M, Hirano, A, Yoshikawa, Y, Tsuruoka, H, and Yamanouchi, K
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The matrix (M) genes of Yamagata-1 strain subacute sclerosing panencephalitis virus passaged in African green monkey kidney cells and human neuroblastoma cells displayed strikingly nonrandom sequence divergence. The genes of both substrains shared a large number of uridine (U) to cytidine (C) transitions, but the latter contained numerous additional U to C changes in a localized region. Over 90% of the additional mutations were identical to the hypermutated nucleotides in the M gene found in a measles inclusion body encephalitis case. The nonrandom nature, the apparent host dependency, and the abrupt boundaries of these mutations suggest that these mutations might be caused by an extrinsic biased mutational activity rather than intrinsic polymerase errors. This mutational activity might account for the extraordinarily high C to U ratios in the non-protein-coding regions of both the M and fusion genes of wild-type measles virus.
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- 1989
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18. Nucleotide sequences of the matrix protein gene of subacute sclerosing panencephalitis viruses compared with local contemporary isolates from patients with acute measles
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Ayata, M., Kimoto, T., Hayashi, K., Seto, T., Murata, R., and Ogura, H.
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- 1998
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19. Percutaneous retrieval of an intracardiac catheter fragment using a snare-loop catheter
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Uçar, B., Kiliç, Z., Ayata, M., Baran Tokar, and Ilhan, H.
20. Roles of neonatal and prepubertal testicular androgens on androgen-induced proliferative response of seminal vesicle cells in adult mice
- Author
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Yamane, T., primary, Ayata, M., additional, Okamoto, S., additional, Terada, N., additional, Kitamura, Y., additional, and Matsumoto, K., additional
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- 1987
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21. Induction of Acute Myoclonic Encephalopathy in Hamsters by Subacute Sclerosing Panencephalitis Virus
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Sugita, T., primary, Shiraki, K., additional, Ueda, S., additional, Iwa, N., additional, Shoji, H., additional, Ayata, M., additional, and Kato, S., additional
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- 1984
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22. Increase in epithelial cell growth by hyperprolactinemia induces delay of castration-induced involution of mouse seminal vesicle
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Ayata, M., Yamane, T., Okamoto, S., Li, W., TerActa, N., and Matsumoto, K.
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- 1989
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23. Effect of long term androgen removal on androgen-induced proliferation of seminal vesicle cells in adult mice
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Ayata, M., Yamane, T., Okamoto, S., Kitamura, Y., and Matsumoto, K.
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- 1987
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24. Effect of androgen pretreatments at adulthood on androgen-induced proliferative response of seminal vesicles in neonatally castrated mice
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Li, W., Ayata, M., Terada, N., Taniguchi, H., and Matsumot, K.
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- 1989
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25. Exploring the potential of artificial intelligence chatbots in prosthodontics education.
- Author
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Eraslan R, Ayata M, Yagci F, and Albayrak H
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- Humans, Educational Measurement methods, Internship and Residency, Education, Dental methods, Artificial Intelligence, Prosthodontics education
- Abstract
Background: The purpose of this study was to evaluate the performance of widely used artificial intelligence (AI) chatbots in answering prosthodontics questions from the Dentistry Specialization Residency Examination (DSRE)., Methods: A total of 126 DSRE prosthodontics questions were divided into seven subtopics (dental morphology, materials science, fixed dentures, removable partial dentures, complete dentures, occlusion/temporomandibular joint, and dental implantology). Questions were translated into English by the authors, and this version of the questions were asked to five chatbots (ChatGPT-3.5, Gemini Advanced, Claude Pro, Microsoft Copilot, and Perplexity) within a 7-day period. Statistical analyses, including chi-square and z-tests, were performed to compare accuracy rates across the chatbots and subtopics at a significance level of 0.05., Results: The overall accuracy rates for the chatbots were as follows: Copilot (73%), Gemini (63.5%), ChatGPT-3.5 (61.1%), Claude Pro (57.9%), and Perplexity (54.8%). Copilot significantly outperformed Perplexity (P = 0.035). However, no significant differences in accuracy were found across subtopics among chatbots. Questions on dental implantology had the highest accuracy rate (75%), while questions on removable partial dentures had the lowest (50.8%)., Conclusion: Copilot showed the highest accuracy rate (73%), significantly outperforming Perplexity (54.8%). AI models demonstrate potential as educational support tools but currently face limitations in serving as reliable educational tools across all areas of prosthodontics. Future advancements in AI may lead to better integration and more effective use in dental education., Competing Interests: Declarations. Ethics approval and consent to participate: Not applicable. Competing interests: The authors declare no competing interests. Informed consent: Informed consent were not required. Institutional review board: This study does not involve human or animal subjects and therefore did not require approval from the Institutional Ethical Board., (© 2025. The Author(s).)
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- 2025
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26. Double-level osteotomy for varus knees using patient-specific cutting guides allow more accurate correction but similar clinical outcomes as compared to conventional techniques.
- Author
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Micicoi G, Grasso F, Hanak L, Kley K, Khakha R, Ayata M, Fayard JM, and Ollivier M
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- Humans, Female, Male, Middle Aged, Retrospective Studies, Treatment Outcome, Knee Joint surgery, Knee Joint diagnostic imaging, Knee Joint physiopathology, Surgery, Computer-Assisted methods, Bone Malalignment surgery, Adult, Osteotomy methods
- Abstract
Purpose: Patient-specific cutting guides are increasingly used in the field of osteotomies around the knee and can improve the accuracy of planned correction and more specifically in the case of double-level osteotomy (DLO). The purpose of this study was to analyse the accuracy of postoperative coronal alignment after DLO using patient-specific cutting guides techniques (PSI) compared to conventional techniques. The secondary objective was to compare the functional results between the two groups at short-term follow-up., Hypothesis: The accuracy of global correction (HKA angle) is better with patient-specific cutting guides compared to conventional techniques for double-level osteotomy METHODS: This multicentric comparative retrospective study included 53 patients (mean age: 53.8 ± 5.2 years, male/female: 44/9) who underwent a DLO for knee varus malalignment. The coronal correction accuracy (as expressed by the difference between postoperative angular values and preoperative targeted correction) was compared between techniques using patient-specific cutting guides (PSI group, n = 27) or conventional techniques (n = 26) for the medial proximal tibial angle (MPTA) and the lateral distal femoral angle (LDFA). Postoperatively, the global alignment expressed by the hip-knee-ankle angle and the joint line obliquity were compared between groups. The postoperative functional results for KOOS and UCLA activity scale score were also compared at a mean follow-up of 1.7 years (1.0-3.1 years)., Results: No difference was observed for the postoperative global alignment between the PSI and the conventional groups (Δ = 0.6 °, p = 0.11) neither for the postoperative posterior proximal tibial angle (Δ = 1.6°, p = 0,99) or the joint line obliquity (Δ = 0.3°, p = 0,17). In the coronal plane, the postoperative MPTA was lower in the PSI group (Δ = 2.3°, p < 0.001) as well as the postoperative LDFA (Δ = 0.9°, p = 0.01). Concerning correction accuracy in the coronal plane, the results showed a significant higher accuracy of the planned correction in the PSI group compared to the conventional group for MPTA (2.2 ± 0.2 versus 0.8 ± 0.7, Δ = 1.5 °, p < 0.001) and LDFA (1.3 ± 1.0 versus 0.6 ± 0.9, Δ = 0.7°, p < 0.001). No improvement difference was observed between the conventional group and the PSI group respectively for the KOOS symptoms (p = 0.12), the KOOS Pain (p = 0,57), the KOOS activities of daily living (p = 0.61), the KOOS sport/rec (p = 0.65), or for the KOOS Quality of Life (p = 0.99) neither for the UCLA (p = 0.97)., Conclusions: This study suggests that the use of custom-made cutting guides improves the accuracy of planned correction in double-level osteotomy compared with conventional techniques, which may have implications particularly in centers not performing a large volume of osteotomies. This improved accuracy is not associated with any difference in joint line obliquity or functional results but these results need to be confirmed by a randomized prospective study., Level of Evidence: III; Retrospective comparative study., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)
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- 2025
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27. Effect of different sintering procedures on marginal and internal fit, color, and fracture load of monolithic zirconia fixed partial prostheses.
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Eraslan R, Sayin Sahin B, Albayrak H, Ayata M, and Temizkanli O
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- Dental Marginal Adaptation, Humans, Computer-Aided Design, Dental Stress Analysis, Materials Testing, Dental Restoration Failure, Dental Materials chemistry, Denture Design, Dental Prosthesis Design, Surface Properties, Zirconium chemistry, Denture, Partial, Fixed, Color
- Abstract
Aim: The aim of the present in vitro study was to investigate the effects of different sintering procedures on the fit, color parameters, and fracture load of monolithic fixed partial prostheses (FPPs)., Materials and Methods: A metal master model was scanned and FPPs were designed. Groups were created by fabricating FPPs using four different sintering procedures (n = 10): Prettau-Standard (PST); Prettau-Slow (PSL); Ice-Speed (ISP); Ice-Standard (IST). PST-PSL (Group P; N = 20) and ISP-IST (Group I; N = 20) were colored with different coloring liquids. The marginal and internal fit were measured using the silicone replica method. CIELAB values of the samples were measured using a spectrophotometer. Then, for each sample, the die was obtained from polymethyl methacrylate. The specimens were cemented into dies and tested in a universal testing machine for fracture load. One-way ANOVA was performed to assess the effect of the sintering procedure on the marginal and internal fit; fracture load; and ∆E00, ∆L', ∆C', and ∆H' values of the FPPs., Results: The PSL and PST groups showed significantly smaller internal and marginal fit values compared with the ISP group. Additionally, the internal fit values of the IST group were significantly higher than those of Group P. Sintering time reduction led to a decrease in ∆E00 values. Fracture load values were not statistically significantly affected by the different sintering procedures for both brands., Conclusion: Different sintering procedures did not have a clinically significant effect on fit and fracture load. Different sintering procedures were found to have an impact on the color change of monolithic zirconia restorations.
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- 2024
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28. A Comparative Analysis of Deep Learning-Based Approaches for Classifying Dental Implants Decision Support System.
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Lubbad MAH, Kurtulus IL, Karaboga D, Kilic K, Basturk A, Akay B, Nalbantoglu OU, Yilmaz OMD, Ayata M, Yilmaz S, and Pacal I
- Subjects
- Humans, Decision Support Systems, Clinical, Deep Learning, Dental Implants, Neural Networks, Computer, Radiography, Panoramic
- Abstract
This study aims to provide an effective solution for the autonomous identification of dental implant brands through a deep learning-based computer diagnostic system. It also seeks to ascertain the system's potential in clinical practices and to offer a strategic framework for improving diagnosis and treatment processes in implantology. This study employed a total of 28 different deep learning models, including 18 convolutional neural network (CNN) models (VGG, ResNet, DenseNet, EfficientNet, RegNet, ConvNeXt) and 10 vision transformer models (Swin and Vision Transformer). The dataset comprises 1258 panoramic radiographs from patients who received implant treatments at Erciyes University Faculty of Dentistry between 2012 and 2023. It is utilized for the training and evaluation process of deep learning models and consists of prototypes from six different implant systems provided by six manufacturers. The deep learning-based dental implant system provided high classification accuracy for different dental implant brands using deep learning models. Furthermore, among all the architectures evaluated, the small model of the ConvNeXt architecture achieved an impressive accuracy rate of 94.2%, demonstrating a high level of classification success.This study emphasizes the effectiveness of deep learning-based systems in achieving high classification accuracy in dental implant types. These findings pave the way for integrating advanced deep learning tools into clinical practice, promising significant improvements in patient care and treatment outcomes., (© 2024. The Author(s) under exclusive licence to Society for Imaging Informatics in Medicine.)
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- 2024
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29. A robust deep learning model for the classification of dental implant brands.
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Leblebicioglu Kurtulus I, Lubbad M, Yilmaz OMD, Kilic K, Karaboga D, Basturk A, Akay B, Nalbantoglu U, Yilmaz S, Ayata M, and Pacal I
- Subjects
- Humans, Neural Networks, Computer, Deep Learning, Dental Implants classification, Radiography, Panoramic
- Abstract
Objective: In cases where the brands of implants are not known, treatment options can be significantly limited in potential complications arising from implant procedures. This research aims to explore the application of deep learning techniques for the classification of dental implant systems using panoramic radiographs. The primary objective is to assess the superiority of the proposed model in achieving accurate and efficient dental implant classification., Material and Methods: A comprehensive analysis was conducted using a diverse set of 25 convolutional neural network (CNN) models, including popular architectures such as VGG16, ResNet-50, EfficientNet, and ConvNeXt. The dataset of 1258 panoramic radiographs from patients who underwent implant treatment at faculty of dentistry was utilized for training and evaluation. Six different dental implant systems were employed as prototypes for the classification task. The precision, recall, F1 score, and support scores for each class have included in the classification accuracy report to ensure accurate and reliable results from the model., Results: The experimental results demonstrate that the proposed model consistently outperformed the other evaluated CNN architectures in terms of accuracy, precision, recall, and F1-score. With an impressive accuracy of 95.74 % and high precision and recall rates, the ConvNeXt model showcased its superiority in accurately classifying dental implant systems. Notably, the model's performance was achieved with a relatively smaller number of parameters, indicating its efficiency and speed during inference., Conclusion: The findings highlight the effectiveness of deep learning techniques, particularly the proposed model, in accurately classifying dental implant systems from panoramic radiographs., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 Elsevier Masson SAS. All rights reserved.)
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- 2024
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30. Secondary Meniscectomy Rates and Risk Factors for Failed Repair of Ramp Lesions Performed at the Time of Primary ACL Reconstruction: An Analysis of 1037 Patients From the SANTI Study Group.
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Pioger C, Ayata M, Pettinari F, Ali AA, Alayane A, Campos JP, Vieira TD, Saithna A, and Sonnery-Cottet B
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- Humans, Female, Male, Risk Factors, Adult, Case-Control Studies, Young Adult, Anterior Cruciate Ligament Injuries surgery, Adolescent, Tibial Meniscus Injuries surgery, Anterior Cruciate Ligament Reconstruction statistics & numerical data, Meniscectomy, Reoperation statistics & numerical data, Treatment Failure
- Abstract
Background: Studies evaluating secondary meniscectomy rates and risk factors for failure of ramp repair are sparse and limited by small numbers and heterogeneity., Purposes/hypothesis: The purposes were to determine the secondary meniscectomy rate for failure of ramp repair performed using a posteromedial portal suture hook at the time of anterior cruciate ligament reconstruction (ACLR) and to identify risk factors for secondary meniscectomy. It was hypothesized that patients who underwent ACLR combined with a lateral extra-articular procedure (LEAP) would experience significantly lower rates of secondary meniscectomy compared with those undergoing isolated ACLR., Study Design: Case-control study; Level of evidence, 3., Methods: Patients undergoing primary ACLR and ramp repair between 2013 and 2020 were included in the study. Final follow-up for each patient was defined by his or her last appointment recorded in a prospective database (with a study end date of March 2023). The database and medical records were used to determine whether patients had undergone secondary meniscectomy for failure of ramp repair. Survivorship of ramp repair (using secondary meniscectomy as an endpoint) was determined using the Kaplan-Meier method. Multivariate analysis was used to investigate possible risk factors., Results: A total of 1037 patients were included in the study. The secondary meniscectomy rate after ramp repair was 7.7% at a mean final follow-up of 72.4 months. Patients without combined ACLR + LEAP were >2-fold more likely to undergo a secondary medial meniscectomy compared with those with combined ACLR + LEAP (hazard ratio, 2.455; 95% CI, 1.457-4.135; P = .0007). Age, sex, preoperative Tegner score, and time between injury and surgery were not significant risk factors for failure., Conclusion: The rate of secondary meniscectomy after ramp repair performed through a posteromedial portal at the time of primary ACLR was low. Patients who underwent isolated ACLR (rather than ACLR + LEAP) were >2-fold more likely to undergo a secondary medial meniscectomy for failure of ramp repair. Additional risk factors for failure of ramp repair were not identified., Competing Interests: One or more of the authors has declared the following potential conflict of interest or source of funding: GCS Ramsay Sante funds the scientific activity at the Santy center. Arthrex cofunds studies at the Santy center through research grants. B.S-C. has received consulting fees and royalties from Arthrex. AOSSM checks author disclosures against the Open Payments Database (OPD). AOSSM has not conducted an independent investigation on the OPD and disclaims any liability or responsibility relating thereto.
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- 2024
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31. A Detailed Karyological Investigation of three Endemic Cobitis Linnaeus, 1758 Species (Teleostei, Cobitidae) in Anatolia, Türkiye.
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Unal Karakus S, Gaffaroğlu M, Karasu Ayata M, and Knytl M
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- Turkey, Animals, Species Specificity, Male, Female, Diploidy, Cypriniformes genetics, Chromosomes genetics, Karyotyping methods, Chromosome Banding, Karyotype
- Abstract
Introduction: Comparative cytogenetics is a vital approach for diagnosing chromosome abnormalities and identifying species-specific patterns. In this study, chromosomal analysis of three Anatolian endemic Cobitis species was performed: Cobitis bilseli, C. fahireae, and C. turcica., Methods: Conventional cytogenetic techniques such as Giemsa staining, C-banding, and Ag-NOR staining were applied, followed by measurements of chromosome arm lengths including analysis of the measured data., Results: The diploid chromosome number, 2n = 50, was determined for all three species. The karyotype formulas were as follows: four pairs of metacentric, 5 pairs of submetacentric, and 16 pairs of subtelo-telocentric chromosomes in C. bilseli; 11 pairs of metacentric, 7 pairs of submetacentric, and 7 pairs of subtelo-telocentric chromosomes in C. fahireae; and 4 pairs of metacentric, 4 pairs of submetacentric, and 17 pairs of subtelo-telocentric chromosomes in C. turcica. Dark C-bands were observed on the pericentromeres of nearly all chromosomes in C. bilseli and C. turcica, whereas light C-bands appeared on the pericentromeres of some chromosomes in C. fahireae. Silver-stained metaphases revealed signals on the short arm of a submetacentric chromosome pair in C. fahireae (each homologous chromosome carries one signal), while in C. bilseli and C. turcica, Ag-NOR signals were detected on the long arm of a single metacentric chromosome (only one homologous chromosome carries the signal, and the signal-carrying chromosome is the largest chromosome in the karyotype)., Conclusion: This study provides new cytogenetic data consistent with the phylogenetic distances between the studied species, indicating that pericentric inversions and/or translocations govern the formation of Cobitis karyotypes., Introduction: Comparative cytogenetics is a vital approach for diagnosing chromosome abnormalities and identifying species-specific patterns. In this study, chromosomal analysis of three Anatolian endemic Cobitis species was performed: Cobitis bilseli, C. fahireae, and C. turcica., Methods: Conventional cytogenetic techniques such as Giemsa staining, C-banding, and Ag-NOR staining were applied, followed by measurements of chromosome arm lengths including analysis of the measured data., Results: The diploid chromosome number, 2n = 50, was determined for all three species. The karyotype formulas were as follows: four pairs of metacentric, 5 pairs of submetacentric, and 16 pairs of subtelo-telocentric chromosomes in C. bilseli; 11 pairs of metacentric, 7 pairs of submetacentric, and 7 pairs of subtelo-telocentric chromosomes in C. fahireae; and 4 pairs of metacentric, 4 pairs of submetacentric, and 17 pairs of subtelo-telocentric chromosomes in C. turcica. Dark C-bands were observed on the pericentromeres of nearly all chromosomes in C. bilseli and C. turcica, whereas light C-bands appeared on the pericentromeres of some chromosomes in C. fahireae. Silver-stained metaphases revealed signals on the short arm of a submetacentric chromosome pair in C. fahireae (each homologous chromosome carries one signal), while in C. bilseli and C. turcica, Ag-NOR signals were detected on the long arm of a single metacentric chromosome (only one homologous chromosome carries the signal, and the signal-carrying chromosome is the largest chromosome in the karyotype)., Conclusion: This study provides new cytogenetic data consistent with the phylogenetic distances between the studied species, indicating that pericentric inversions and/or translocations govern the formation of Cobitis karyotypes., (© 2024 The Author(s). Published by S. Karger AG, Basel.)
- Published
- 2024
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32. [A Case of Small Thymic Carcinoma with Pleural Dissemination Preoperatively Suspected as Pulmonary Metastasis from Rectal Cancer].
- Author
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Matsuda R, Higaki N, Abe F, Adachi S, Fujie Y, Ueshima S, Hayashida H, Ohnishi T, and Ayata M
- Subjects
- Male, Humans, Aged, Thymoma, Mediastinal Neoplasms, Lung Neoplasms drug therapy, Lung Neoplasms surgery, Lung Neoplasms pathology, Rectal Neoplasms drug therapy, Rectal Neoplasms surgery, Thymus Neoplasms drug therapy, Thymus Neoplasms surgery
- Abstract
A case was 73-year-old man, who had history of laparoscopic high anterior resection surgery for rectal cancer, followed by adjuvant chemotherapy 2 years ago. Preoperative diagnosis was anterior mediastinal tumor, with multiple intrapulmonary nodules noted, though no increasing tendency. During adjuvant chemotherapy for colorectal cancer, the anterior mediastinal tumor showed some shrinkage, while that and 3 intrapulmonary nodules slowly increased in size after completion, thus rectal cancer pulmonary and mediastinal metastasis were suspected. Complete resection of the intrapulmonary nodules and anterior mediastinal tumor was considered feasible. Thoracoscopic observation revealed multiple small pleural seeding lesions and all speculated to be intrapulmonary metastases before surgery were also pleural lesions. Intraoperative rapid diagnostic findings of a biopsy section revealed possible colorectal cancer metastasis, though histological type was not revealed. Final histopathological diagnosis was pleural dissemination of thymic carcinoma. Lenvatinib was introduced 2 months later for thymic carcinoma with pleural dissemination. Two years after surgery, the anterior mediastinum primary tumor had slightly decreased and the pleural nodules also showed a shrinking tendency. In such cases of small tumor with increasing tendency and irregular margins, thymic carcinoma should be considered when planning treatment.
- Published
- 2023
33. Effect of Thickness and Translucency on Color Change and Masking Ability of Ceramic Materials used for Laminate Veneers.
- Author
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Ayata M, Kilic K, Al-Haj Husain N, and Özcan M
- Subjects
- Color, Materials Testing, Ceramics, Resin Cements, Composite Resins, Dental Porcelain, Dental Veneers
- Abstract
This study evaluated the effect of the thickness and translucency of lithium disilicatebased glass ceramics on resin composite substrates on color change and masking effect. Laminate veneers were fabricated using IPS e.max CAD (A1) blocks with two different light transmittance values (High translucent [HT], Low translucent [LT]). Slices of two different thicknesses (0.3 mm, 0.5 mm) were obtained (n=10) and laminate veneers were cemented on the resin composite substrates of two different shades (A2, A3.5). The color change (ΔE values) was evaluated with the CIELab color system using a spectrophotometer, while the masking effect was calculated. The data were analyzed using independent-samples t-test and two-way analysis of variance. The ceramic thickness and translucency had a significant effect on final color and masking. When HT was used, and the laminate veneer thickness decreased (0.3 mm), the masking effect in ΔE values were lower (p⟨0.05). The ΔE values (⟩3.7) were clinically unacceptable. With the increase in thickness, translucency of porcelain laminate veneers decreases showing better color masking ability. Veneer thickness seems to be more effective on the restoration's masking ability than the shade of the substrate and translucency. Cinically, in case a 0.5-mm or thinner laminate veneer is planned, tooth color, resin cement and ceramic type should be considered., (Copyright© 2023 Dennis Barber Ltd.)
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- 2023
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34. Recycling selective laser melting alloy powder on cobalt chromium-to-ceramic bond strength.
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Albayrak H, Ayata M, and Demirel B
- Subjects
- Powders, Cobalt, Chromium, Metal Ceramic Alloys chemistry, Chromium Alloys chemistry, Materials Testing, Ceramics chemistry, Lasers, Surface Properties, Dental Porcelain chemistry, Dental Bonding
- Abstract
Statement of Problem: Reusing the powder in selective laser melting machines after multiple cycles is a cost-effective procedure for dental laboratories. However, information on the metal-ceramic bond strength of the framework fabricated by using recycled powder is lacking., Purpose: The purpose of this in vitro study was to investigate how the bonding agent and repeated alloy powder reuse affected the metal-ceramic bond strength of cobalt chromium frameworks fabricated by using selective laser melting., Material and Methods: Four square and 40-bar-shaped cobalt chromium frameworks were fabricated by selective laser melting. Half were produced by using virgin alloy powder (Group V; n
square =2, nbar =20), and half with 30-times reused powder (Group R; nsquare =2, nbar =20). The particle size of each powder was measured by using scanning electron microscopy, and its phase composition was characterized by using radiograph diffraction. Each group was divided into 2 subgroups (Group W [Wash Opaque] and Group N [NP-Bond]) according to the brand of bonding agent used. After ceramic application, the metal-ceramic bond strengths were evaluated by using 3-point bend tests. The bonding agents' chemical composition was analyzed by using radiograph fluorescence. Bond strength data were analyzed by using a 2-way analysis of variance (α=.05)., Results: Mean ±standard deviation bond strengths did not differ significantly (P>.05) between Groups V (31.25 ±4.65) and R (30.88 ±4.78). Group W (35.34 ±1.78) had significantly higher bond strength than Group N (26.80 ±1.74; P<.001). Radiograph diffraction analysis found that the phase composition of all powders was similar. The bonding agent in Group W contained cerium, whereas, that in Group N did not., Conclusions: Metal-ceramic bond strength was unaffected by alloy powder reuse. However, the bonding agent brand may affect the bond strength of cobalt chromium frameworks fabricated by using selective laser melting., (Copyright © 2023 Editorial Council for The Journal of Prosthetic Dentistry. Published by Elsevier Inc. All rights reserved.)- Published
- 2023
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35. Failure Rates of Repaired Bucket-Handle Tears of the Medial Meniscus Concomitant With Anterior Cruciate Ligament Reconstruction: A Cohort Study of 253 Patients From the SANTI Study Group With a Mean Follow-up of 94 Months.
- Author
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El Helou A, Gousopoulos L, Shatrov J, Hopper GP, Philippe C, Ayata M, Thaunat M, Fayard JM, Freychet B, Vieira TD, and Sonnery-Cottet B
- Subjects
- Humans, Adult, Menisci, Tibial surgery, Cohort Studies, Follow-Up Studies, Retrospective Studies, Arthroscopy methods, Anterior Cruciate Ligament Injuries surgery, Tibial Meniscus Injuries surgery, Anterior Cruciate Ligament Reconstruction methods
- Abstract
Background: Failure rates of repaired bucket-handle medial meniscal tears (BHMMTs) concomitant with anterior cruciate ligament reconstruction (ACLR) are as high as 20%. The outcomes of posteromedial portal suture hook repair have not been compared with all-inside repair techniques for this subtype of meniscal lesion., Purpose/hypothesis: The aim of this study was to evaluate the outcomes and failure rates of patients who underwent BHMMT repair concomitant with ACLR using an all-inside technique, suture hook + all-inside technique, or suture hook + outside-in technique. It was hypothesized that no significant differences in failure rates would be found between the groups., Study Design: Cohort study; Level of evidence, 3., Methods: A retrospective analysis was performed on patients diagnosed with a BHMMT who underwent meniscal repair during primary ACLR and had a minimum follow-up of 2 years. Patients were grouped based on the meniscal repair technique used: all-inside repair, suture hook + all-inside repair, or suture hook + outside-in repair. At the end of the study period, secondary medial meniscectomy rates were determined., Results: The study population comprised 253 patients who underwent repair of a BHMMT with concomitant ACLR with a mean follow-up of 94.0 ± 47.6 months. A total of 114 patients (45.1%) underwent all-inside repair, 61 patients (24.1%) underwent suture hook + all-inside repair, and 78 patients (30.8%) underwent suture hook + outside-in repair. Overall, there were 36 failures. The failure rates were 20.2%, 14.8%, and 5.1%, respectively ( P = .0135). All-inside repairs were >4 times more likely to fail than suture hook + outside-in repairs (hazard ratio [HR], 4.103; 95% CI, 1.369-12.296; P = .0117). Failure was also 3 times higher (HR, 2.943; 95% CI, 1.224-7.075; P = .0159) for patients <30 years of age compared with those aged ≥30 years. An additional anterolateral ligament reconstruction (ALLR) was also found to reduce the failure rate of repaired BHMMTs concomitant with ACLR., Conclusion: Combined suture hook + outside-in repair of BHMMTs resulted in significantly fewer failures than all other techniques. Furthermore, age <30 years and no additional ALLR were associated with higher failure rates.
- Published
- 2023
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36. [A Case of Hypertrophic Pulmonary Osteoarthropathy Associated with Pulmonary Pleomorphic Carcinoma].
- Author
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Matsuda R, Higaki N, Abe F, Adachi S, Fujie Y, Ueshima S, Hayashida H, Onishi T, and Ayata M
- Subjects
- Female, Humans, Middle Aged, Arthralgia complications, Lung Neoplasms complications, Lung Neoplasms surgery, Lung Neoplasms pathology, Carcinoma, Non-Small-Cell Lung complications, Osteoarthropathy, Secondary Hypertrophic surgery, Osteoarthropathy, Secondary Hypertrophic complications, Carcinoma, Squamous Cell complications
- Abstract
Hypertrophic pulmonary osteoarthropathy(HPO)is a tumor-associated syndrome that features the triad of clubbed fingers, periosteal bone growth in long bones, and arthritis, and is often associated with an adenocarcinoma or squamous cell carcinoma. This report presents details of a case of HPO associated with pleomorphic carcinoma, which was relieved by treatment. A 47-year-old woman was presented with a complaint of generalized arthralgia. A physical examination showed swollen joints in the body and clubbed fingers. Chest CT revealed a mass shadow in the left upper lobe and ultrasound- guided biopsy findings led to a diagnosis of non-small cell lung cancer. Furthermore, bone scintigraphy indicated symmetrical accumulation in bones and joints throughout the body. A right upper lobectomy was performed along with combined chest wall resection and mediastinal lymph node dissection with an open chest, and the presence of lung cancer complicated with HPO was indicated. Pathological examination results revealed a diagnosis of pleomorphic carcinoma(pT4N0M0, Stage ⅢA). Systemic arthralgia was resolved on the first postoperative day. One year after surgery, a solitary brain metastasis developed and was removed, with no recurrence at the time of writing. Joint symptoms related to HPO can be expected to improve with treatment of pulmonary lesions, thus aggressive procedures for diagnosis and treatment are desirable.
- Published
- 2022
37. Upregulation of viral RNA polymerase activity promotes adaptation of SSPE virus to neuronal cells.
- Author
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Sakamoto K, Satoh Y, Takahashi KI, Wakimoto H, Kitagawa Y, Gotoh B, Ayata M, and Itoh M
- Subjects
- Humans, Measles virus physiology, SSPE Virus genetics, SSPE Virus metabolism, Up-Regulation, Viral Fusion Proteins genetics, Viral Replicase Complex Proteins, Neurodegenerative Diseases, Subacute Sclerosing Panencephalitis genetics, Subacute Sclerosing Panencephalitis metabolism
- Abstract
Subacute sclerosing panencephalitis (SSPE) is a rare progressive neurodegenerative disease caused by measles virus variants (SSPE viruses) that results in eventual death. Amino acid substitution(s) in the viral fusion (F) protein are key for viral propagation in the brain in a cell-to-cell manner, a specific trait of SSPE viruses, leading to neuropathogenicity. In this study, we passaged an SSPE virus in cultured human neuronal cells and isolated an adapted virus that propagated more efficiently in neuronal cells and exhibited increased cell-to-cell fusion. Contrary to our expectation, the virus harbored mutations in the large protein, a viral RNA-dependent RNA polymerase, and in the phosphoprotein, its co-factor, rather than in the F protein. Our results imply that upregulated RNA polymerase activity, which increases F protein expression and cell-to-cell fusion, could be a viral factor that provides a growth advantage and contributes to the adaptation of SSPE viruses to neuronal cells., (Copyright © 2022 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2022
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38. [A Case of Rectal Neuroendocrine Tumor with a Major Axis of 10.7 mm with Lymph Node Metastasis].
- Author
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Nishimura H, Onishi T, Sata A, Miyazaki Y, Adachi S, Hayashida H, Higaki N, Ayata M, and Ueshima S
- Subjects
- Anal Canal, Female, Humans, Lymph Node Excision, Lymphatic Metastasis, Middle Aged, Neuroendocrine Tumors surgery, Proctectomy, Rectal Neoplasms surgery
- Abstract
The case is a 50-year-old woman. Colonoscopy performed by a local doctor for the purpose of stool occult blood positive revealed a 15 mm tumor in the lower rectum, biopsy showed chromogranin positive, synaptophysin positive, and Ki-67 index<1% showed a neuroendocrine tumor(NET), G1 was diagnosed and introduced. Colonoscopy revealed a smooth- surfaced circular hemispherical tumor with a lower edge 30 mm from the anal margin and 20 mm from the dentate line, and EUS showed 10.7×5.2 mm in layers 2 to 3. It was visualized as a well-defined hypoechoic tumor. Contrast-enhanced CT examination showed a 12×5 mm mass showing a contrast-enhancing effect, and no lymphadenopathy or distant metastasis was observed. Contrast-enhanced MRI showed no evidence of pelvic lymphadenopathy. Based on the above, it was diagnosed that NET, G1, and infiltration to the submucosa exceeding 10 mm. Although endoscopic resection as a diagnostic treatment was also an option, we determined surgical resection policy, therefore we performed laparoscopic rectal intersphincteric resection and upper D2 dissection. Histopathological findings showed a tumor of 11×8 mm infiltrating the submucosa( 5,000μm)with metastasis to the pararectal lymph nodes, and the diagnosis was T1b, N1, Ki-67 index 3%, Ly1, V1a, NET G2, pStage ⅢB. Her postoperative course was uneventful, and 6 months later, we performed her artificial anal closure. One year after the operation, there are frequent bowel movements but no fecal incontinence and she is alive without recurrence. For rectal NET with a tumor diameter of 10 mm or more, radical surgery with dissection is recommended because of the high risk of lymph node metastasis. In this case lymph node metastasis was observed surgical resection according to the above reason, but endoscopic resection was possible except that the preoperative size exceeded 10 mm to 0.7 mm and the distance from the anus was short, therefore it took some thought to decide the policy.
- Published
- 2021
39. Deep learning based digital backpropagation demonstrating SNR gain at low complexity in a 1200 km transmission link.
- Author
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Bitachon BI, Ghazisaeidi A, Eppenberger M, Baeurle B, Ayata M, and Leuthold J
- Abstract
A deep learning (DL) based digital backpropagation (DBP) method with a 1 dB SNR gain over a conventional 1 step per span DBP is demonstrated in a 32 GBd 16QAM transmission across 1200 km. The new DL-DPB is shown to require 6 times less computational power over the conventional DBP scheme. The achievement is possible due to a novel training method in which the DL-DBP is blind to timing error, state of polarization rotation, frequency offset and phase offset. An analysis of the underlying mechanism is given. The applied method first undoes the dispersion, compensates for nonlinear effects in a distributed fashion and reduces the out of band nonlinear modulation due to compensation of the nonlinearities by having a low pass characteristic. We also show that it is sufficient to update the elements of the DL network using a signal with high nonlinearity when dispersion or nonlinearity conditions changes. Lastly, simulation results indicate that the proposed scheme is suitable to deal with impairments from transmission over longer distances.
- Published
- 2020
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40. Compact, ultra-broadband plasmonic grating couplers.
- Author
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Ayata M, Fedoryshyn Y, Koch U, and Leuthold J
- Abstract
We demonstrate all-metallic grating couplers that enable vertical, compact and broadband fiber-coupling. The grating couplers are based on a metal layer and directly convert a vertical fiber mode into surface plasmon polaritons (SPPs). In combination with a focusing arrangement, the grating couplers require only a small footprint of 13.5 × 12 µm
2 . We characterize the grating couplers with both periodic and apodized gratings and experimentally show a 1-dB bandwidth of 115 nm with a coupling efficiency of 2.9 dB.- Published
- 2019
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41. High-speed plasmonic modulator in a single metal layer.
- Author
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Ayata M, Fedoryshyn Y, Heni W, Baeuerle B, Josten A, Zahner M, Koch U, Salamin Y, Hoessbacher C, Haffner C, Elder DL, Dalton LR, and Leuthold J
- Abstract
Plasmonics provides a possible route to overcome both the speed limitations of electronics and the critical dimensions of photonics. We present an all-plasmonic 116-gigabits per second electro-optical modulator in which all the elements-the vertical grating couplers, splitters, polarization rotators, and active section with phase shifters-are included in a single metal layer. The device can be realized on any smooth substrate surface and operates with low energy consumption. Our results show that plasmonics is indeed a viable path to an ultracompact, highest-speed, and low-cost technology that might find many applications in a wide range of fields of sensing and communications because it is compatible with and can be placed on a wide variety of materials., (Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2017
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42. Amino acid substitutions in the heptad repeat A and C regions of the F protein responsible for neurovirulence of measles virus Osaka-1 strain from a patient with subacute sclerosing panencephalitis.
- Author
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Ayata M, Tanaka M, Kameoka K, Kuwamura M, Takeuchi K, Takeda M, Kanou K, and Ogura H
- Subjects
- Animals, Brain virology, CHO Cells, Callithrix, Cell Line, Chlorocebus aethiops, Cricetinae, Cricetulus, Humans, Measles virus isolation & purification, Protein Structure, Tertiary, Vero Cells, Amino Acid Substitution genetics, Measles virus genetics, Measles virus pathogenicity, Subacute Sclerosing Panencephalitis virology, Viral Fusion Proteins genetics
- Abstract
Measles virus (MV) is the causative agent of subacute sclerosing panencephalitis (SSPE). We previously reported that the F gene of the SSPE Osaka-2 strain is the major determinant of MV neurovirulence. Because the sites and extents of mutations differ among SSPE strains, it is necessary to determine the mutations responsible for the SSPE-specific phenotypes of individual viral strain. In this study, recombinant viruses containing the envelope-associated genes from the SSPE Osaka-1 strain were generated in the IC323 wild-type MV background. Hamsters inoculated with MV containing the H gene of the Osaka-1 strain displayed hyperactivity and seizures, but usually recovered and survived. Hamsters inoculated with MV containing the F gene of the Osaka-1 strain displayed severe neurologic signs and died. Amino acid substitutions in the heptad repeat A and C regions of the F protein, including a methionine-to-valine substitution at amino acid 94, play major roles in neurovirulence., (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Published
- 2016
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43. Effect of Enoxaparin Sodium on Experimentally-Induced Myringosclerosis in Rats.
- Author
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Ayata M, Kaptan Z, Uzunkulaoğlu H, Akyıldız İ, Tüzüner A, Ünverdi H, and Karadaş H
- Subjects
- Animals, Calcinosis, Disease Models, Animal, Fibrosis, Hyalin physiology, Hyperemia pathology, Myringosclerosis pathology, Rats, Wistar, Tympanic Membrane pathology, Anticoagulants pharmacology, Enoxaparin pharmacology, Myringosclerosis physiopathology, Wound Healing drug effects
- Abstract
Objective: To evaluate the effectiveness of enoxaparin sodium (ES) on experimentally-induced myringosclerosis in rats., Materials and Methods: Twenty Wistar albino-type rats weighing up to 250-300 g each were randomized into four groups containing five rats each and were then bilaterally myringotomized. The control group (n=5) received intratympanic serum physiologic injections, whereas ES2 (n=5), ES4 (n=5), and ES6 groups (n=5) received intratympanic ES of 2000 IU, 4000 IU, and 6000 IU, respectively, for 10 days after myringotomy. Rats were sacrificed at 60 days after intratympanic application and were then prepared for histopathologic evaluation., Results: As for tympanic membrane hyaline degeneration, there were statistically significant differences among the control, ES2, ES4, and ES6 groups (p<0.05). As for fibrosis formation on tympanic membranes, a statistically significant difference was observed among the control and study groups; however, although not statistically significant, the formation of fibrosis was slowed down in the ES2 and ES4 groups compared with the control group. The control and study groups did not show any significant difference for calcification, hyperemia, and tympanic membrane thickening (p>0.05)., Conclusion: Although our study and control groups comprised limited number of animals, and only one parameter demonstrated a statistically significant difference between the groups, ES may have an ameliorating effect on myringosclerosis induced by myringotomy in the tympanic membranes of rats. ES proved to be effective in the prevention of hyaline disc formation. Further studies should be conducted for better understanding of the effects of low-molecular-weight heparin (LMWH) (i.e., enoxaparin) on myringosclerosis.
- Published
- 2015
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44. Glycopeptidolipid of Mycobacterium smegmatis J15cs Affects Morphology and Survival in Host Cells.
- Author
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Fujiwara N, Ohara N, Ogawa M, Maeda S, Naka T, Taniguchi H, Yamamoto S, and Ayata M
- Subjects
- Animals, Cell Line, Genes, Bacterial, Genetic Complementation Test, Host-Pathogen Interactions, Mice, Microbial Viability, Bacterial Proteins physiology, Glycolipids physiology, Glycopeptides physiology, Mycobacterium smegmatis physiology
- Abstract
Mycobacterium smegmatis has been widely used as a mycobacterial infection model. Unlike the M. smegmatis mc(2)155 strain, M. smegmatis J15cs strain has the advantage of surviving for one week in murine macrophages. In our previous report, we clarified that the J15cs strain has deleted apolar glycopeptidolipids (GPLs) in the cell wall, which may affect its morphology and survival in host cells. In this study, the gene causing the GPL deletion in the J15cs strain was identified. The mps1-2 gene (MSMEG_0400-0402) correlated with GPL biosynthesis. The J15cs strain had 18 bps deleted in the mps1 gene compared to that of the mc(2)155 strain. The mps1-complemented J15cs mutant restored the expression of GPLs. Although the J15cs strain produces a rough and dry colony, the colony morphology of this mps1-complement was smooth like the mc(2)155 strain. The length in the mps1-complemented J15cs mutant was shortened by the expression of GPLs. In addition, the GPL-restored J15cs mutant did not survive as long as the parent J15cs strain in the murine macrophage cell line J774.1 cells. The results are direct evidence that the deletion of GPLs in the J15cs strain affects bacterial size, morphology, and survival in host cells.
- Published
- 2015
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45. Biased hypermutation occurred frequently in a gene inserted into the IC323 recombinant measles virus during its persistence in the brains of nude mice.
- Author
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Otani S, Ayata M, Takeuchi K, Takeda M, Shintaku H, and Ogura H
- Subjects
- Animals, Disease Models, Animal, Female, Green Fluorescent Proteins genetics, Measles virus classification, Mice, Mice, Nude, Mutant Proteins genetics, Brain virology, Encephalitis, Viral virology, Genes, Reporter, Measles virology, Measles virus genetics, Measles virus isolation & purification, Mutation
- Abstract
Measles virus (MV) is the causative agent of measles and its neurological complications, subacute sclerosing panencephalitis (SSPE) and measles inclusion body encephalitis (MIBE). Biased hypermutation in the M gene is a characteristic feature of SSPE and MIBE. To determine whether the M gene is the preferred target of hypermutation, an additional transcriptional unit containing a humanized Renilla reniformis green fluorescent protein (hrGFP) gene was introduced into the IC323 MV genome, and nude mice were inoculated intracerebrally with the virus. Biased hypermutation occurred in the M gene and also in the hrGFP gene when it was inserted between the leader and the N gene, but not between the H and L gene. These results indicate that biased hypermutation is usually found in a gene whose function is not essential for viral proliferation in the brain and that the location of a gene in the MV genome can affect its mutational frequency., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
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46. A 46-year-old woman with atelectasis from an endobronchial tumor.
- Author
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Uenami T, Kijima T, Ayata M, Hayama Y, Tsuruta N, Saito Y, Niju T, Higaki N, and Ikeda T
- Subjects
- Female, Humans, Lung Neoplasms metabolism, Lung Neoplasms surgery, Lymphoma, Large-Cell, Anaplastic metabolism, Lymphoma, Large-Cell, Anaplastic surgery, Middle Aged, Neoplasms, Muscle Tissue metabolism, Neoplasms, Muscle Tissue surgery, Phosphotransferases metabolism, Pneumonectomy, Pulmonary Atelectasis diagnosis, Treatment Outcome, Lung Neoplasms complications, Lymphoma, Large-Cell, Anaplastic complications, Neoplasms, Muscle Tissue complications, Pulmonary Atelectasis etiology
- Published
- 2013
- Full Text
- View/download PDF
47. Remarkable similarity in genome nucleotide sequences between the Schwarz FF-8 and AIK-C measles virus vaccine strains and apparent nucleotide differences in the phosphoprotein gene.
- Author
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Ito C, Ohgimoto S, Kato S, Sharma LB, Ayata M, Komase K, Takeuchi K, Ihara T, and Ogura H
- Subjects
- Amino Acid Substitution, Humans, Japan, Molecular Sequence Data, Mutation, Missense, Point Mutation, Sequence Analysis, DNA, Vaccines, Attenuated, Genome, Viral, Measles Vaccine genetics, Measles virus genetics, Phosphoproteins genetics, Polymorphism, Genetic, Viral Proteins genetics
- Abstract
The Schwarz FF-8 (FF-8) and AIK-C measles virus vaccine strains are currently used for vaccination in Japan. Here, the complete genome nucleotide sequence of the FF-8 strain has been determined and its genome sequence found to be remarkably similar to that of the AIK-C strain. These two strains are differentiated only by two nucleotide differences in the phosphoprotein gene. Since the FF-8 strain does not possess the amino acid substitutions in the phospho- and fusion proteins which are responsible for the temperature-sensitivity and small syncytium formation phenotypes of the AIK-C strain, respectively, other unidentified common mechanisms likely attenuate both the FF-8 and AIK-C strains., (© 2011 The Societies and Blackwell Publishing Asia Pty Ltd.)
- Published
- 2011
- Full Text
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48. The F gene of the Osaka-2 strain of measles virus derived from a case of subacute sclerosing panencephalitis is a major determinant of neurovirulence.
- Author
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Ayata M, Takeuchi K, Takeda M, Ohgimoto S, Kato S, Sharma LB, Tanaka M, Kuwamura M, Ishida H, and Ogura H
- Subjects
- Animals, Chlorocebus aethiops, Cricetinae, Measles virus pathogenicity, Species Specificity, Vero Cells, Viral Fusion Proteins physiology, Virulence genetics, Measles virus genetics, Subacute Sclerosing Panencephalitis virology, Viral Fusion Proteins genetics
- Abstract
Measles virus (MV) is the causative agent for acute measles and subacute sclerosing panencephalitis (SSPE). Although numerous mutations have been found in the MV genome of SSPE strains, the mutations responsible for the neurovirulence have not been determined. We previously reported that the SSPE Osaka-2 strain but not the wild-type strains of MV induced acute encephalopathy when they were inoculated intracerebrally into 3-week-old hamsters. The recombinant MV system was adapted for the current study to identify the gene(s) responsible for neurovirulence in our hamster model. Recombinant viruses that contained envelope-associated genes from the Osaka-2 strain were generated on the IC323 wild-type MV background. The recombinant virus containing the M gene alone did not induce neurological disease, whereas the H gene partially contributed to neurovirulence. In sharp contrast, the recombinant virus containing the F gene alone induced lethal encephalopathy. This phenotype was related to the ability of the F protein to induce syncytium formation in Vero cells. Further study indicated that a single T461I substitution in the F protein was sufficient to transform the nonneuropathogenic wild-type MV into a lethal virus for hamsters.
- Published
- 2010
- Full Text
- View/download PDF
49. Contribution of matrix, fusion, hemagglutinin, and large protein genes of the CAM-70 measles virus vaccine strain to efficient growth in chicken embryonic fibroblasts.
- Author
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Sharma LB, Ohgimoto S, Kato S, Kurazono S, Ayata M, Takeuchi K, Ihara T, and Ogura H
- Subjects
- Animals, Blotting, Western, Cell Line, Chick Embryo virology, Cloning, Molecular, DNA, Recombinant genetics, Fibroblasts virology, Flow Cytometry, Genes, Viral physiology, Humans, Reverse Transcriptase Polymerase Chain Reaction, Transcription, Genetic genetics, Transduction, Genetic, Viral Matrix Proteins genetics, Viral Proteins genetics, Virus Internalization, Virus Replication genetics, Hemagglutinins, Viral genetics, Measles Vaccine genetics, Measles virus genetics
- Abstract
Attenuated live vaccines of measles virus (MV) have been developed from clinical isolates by serial propagation in heterologous cells, mainly chicken embryonic cells. The safety and effectiveness of these vaccines have been well established. However, the molecular mechanism of their attenuation remains a subject of investigation. The CAM-70 MV vaccine strain was developed from the Tanabe strain by serial propagation in chicken embryonic cells. In the present study, we assessed the contribution of each gene in the CAM-70 strain to efficient growth in chicken embryonic fibroblasts (CEF). We used a cloned MV IC323 based on the wild-type IC-B strain and generated a series of IC323s that possess one or more of the CAM-70 genes. Then, we examined the infection of CEF and CEF expressing human signaling lymphocyte activation molecule with the recombinant MVs. Our results demonstrated that MV needs to adapt to CEF at both the entry and postentry steps and that the CAM-70 matrix protein gene plays an important role in adaptation to CEF at the early stage of the virus replication cycle. The CAM-70 large protein gene was responsible for the efficient transcription and replication in CEF, and the CAM-70 hemagglutinin and fusion protein genes were responsible for efficient entry. Investigations focusing on these genes might elucidate unknown molecular mechanisms underlying the attenuation of MV.
- Published
- 2009
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50. [A case of nonfunctioning islet cell tumor with extensive calcification].
- Author
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Nakano K, Yamashita S, Soma I, Hayashi N, Higaki N, Murakami M, Hayashida H, Kan K, Ichihara T, Sakon M, and Ayata M
- Subjects
- Humans, Male, Middle Aged, Adenoma, Islet Cell pathology, Calcinosis, Pancreatic Neoplasms pathology
- Abstract
A 52-year-old man was admitted for detailed examination of a mass with extensive calcification in the tail of the pancreas by fluoro-deoxy glucose-positron emission tomography/computed tomography (FDG-PET/CT). Abdominal CT and magnetic resonance imaging (MRI) findings showed a calcified tumor 5 cm in diameter with a smooth surface. The tumor mainly showed calcification at it center and a partially solid element around it margin which was enhanced in the early phase. With no definiture preoperative diagnossi, we performed distal pancreatectomy and splenectomy. Pathological and immunohistochemical studies revealed a nonfunctioning islet cell tumor with calcification. A nonfunctioning islet cell tumor with central calcification formation as it grew to a maximum diameter of 7 cm is rare. When diagnosing pancreatic tumors it must be kept in mind that some nonfunctioning islet cell tumors of the pancreas can show nontypical features such as calcification formation.
- Published
- 2009
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