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Introduction. The author provides data about coming into being of Uzbek and Azerbaijani scientific collaboration during the years of independent development of the two countries. The article deals with solid contractual basis in the scientific sphere, including the agreements between the Ministries of Public Education, Academies of Sciences, higher education institutions of the two countries, and with the collaboration in the field of the attestation of highly-qualified scientific and scientific-pedagogical personnel. Methods and materials. The given article also contains information about the direct co-operation of the two states in the sphere of natural, exact sciences and humanities, furthering close and fruitful interrelation of the two countries’ scientific circles, covering all the given sphere’s branches of partnership relations. Analysis. The article analyzes the process of multifaceted scientific cooperation between Uzbekistan and Azerbaijan, which occurs through the establishment of close contacts between scientists and research centers of the two countries, the implementation of joint research on pressing issues, mutual internships and scientific business trips, as well as the participation in international scientific conferences and symposiums. Close mutual contacts are also carried out in the form of the exchange of scientific personnel and work. Results. The multifaceted Uzbek-Azerbaijani scientific cooperation considered in the article is represented by the following factors: bilateral agreements and arrangements in the scientific field; direct development in the field of natural, exact sciences and humanities; implementation of mutual internships and scientific missions; exchange of scientific personnel and labor.