1. Polimorfizmi gena HOXA1, FOXF1, OSR1 i MTRR kao čimbenici rizika prirođenih malformacija
- Author
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Lozić, Bernarda, Krželj, Vjekoslav, Zemunik, Tatijana, Boraska Perica, Vesna, Roje, Damir, and Jakuš, Floriana
- Subjects
Genetski polimorfizam ,Polimorfizmi gena HOXA1 ,FOXF1 ,OSR1 i MTRR ,prirođene malformacije ,Genetic Polymorphism ,BIOMEDICINA I ZDRAVSTVO. Kliničke medicinske znanosti. Klinička biokemija ,Pathology. Clinical medicine ,Kongenitalne abnormalnosti ,BIOMEDICINE AND HEALTHCARE. Clinical Medical Sciences. Clinical Biochemistry ,Patologija. Klinička medicina ,udc:616(043.3) ,Congenital Abnormalities - Abstract
U ovom istraživanju proveli smo genetičku studiju povezanosti različitih tipova prirođenih anomalija s polimorfizmima gena uključenih u razvoj kao čimbenika rizika razvojnih poremećaja. Analizirali smo 140 uzoraka DNA izolirane iz tkiva parafinskih kocki od fetalno ili neonatalno umrle djece s prirođenim anomalijama a naspram kontrolne skupine zdrave djece kod četiri različita polimorfizma gena rs12329305 OSR1, rs10951154 HOXA1, rs9936833 u blizini FOXF1 i rs326119 MTRR. Spomenuti polimorfizmi analizirani su metodom real-time PCR. Analiza povezanosti napravljena je na razini alelske i genotipske distribucije između dvije ispitivane skupine. Značajnu alelsku (p=7×10−4) i genotipsku (p=0,0013) povezanost s prirođenim malformacijama našli smo u polimorfizmu rs12329305 gena OSR1. Dodatne analize povezanosti u istog polimorfizma pokazale su njegovu povezanost s podskupinom izoliranih anomalija (p=1.25×10−5) i to sa razvojnim anomalijama srca (p=5,12x10-8) i bubrega (p=4,18 x 10-5). Polimorfizam rs9936833 u blizini gena FOXF1 pokazao je genotipsku povezanost s prirođenim malformacijama (p=0,034), dok ostala dva polimorfizma nisu pokazala. Analizom distribucije genotipova ispitivanih polimorfizama uz uključen spol utvrdili smo da je OR za pojavnost prirođenih malformacija u skupini muškog spola za 1,8 puta veći nego u skupini ženskog spola (p=0,038). Rezultati ovog istraživanja po prvi put su pokazali da su polimorfizmi rs12329305 gena OSR1 i rs9936833 gena FOXF1, kao i muški spol, čimbenici rizika za nastanak različitih tipova prirođenih malformacija u mrtvorođene/neonatalno umrle djece., We tested the association of four development-related gene polymorphisms with congenital anomalies. We assumed that those polymorphic variants may be a risk factor for developmental disorders. We analyzed 140 DNA samples isolated from archived paraffin tissue of deceased patients in whom fetal/neonatal autopsy examination had shown congenital malformations versus a control group of healthy children for four different polymorphisms: OSR1 rs12329305, rs9936833 near FOXF1, HOXA1 rs10951154 and MTRR rs326119. These polymorphisms were genotyped using the TaqMan allelic discrimination assay. Association analysis was performed on the allelic and genotypic distribution between the two tested groups. Significant allelic and genotypic association with stillborn/neonatal death was observed for rs12329305 (p=7×10-4, p=0.0013, respectively). In addition, association analysis for the same polymorphism was shown in the subgroup with isolated anomalies (p=1.25×10−5), particularly in the subgroup of cases with kidney and heart anomalies (p=4.18 x 10-5, p=5.12×10-8, respectively). Polymorphism rs9936833 near the FOXF1 gene showed only genotypic association with congenital malformations (p=0.034), when we compared minor allele heterozygotes and homozygotes versus major allele homozygotes, while the other two polymorphisms were not revealed. We also found that the OR for congenital malformations occurrence was 1.8 times higher in males than in females (p = 0.038), when we analysed the genotypic distribution of four examined polymorphisms along with sex. This is the first study, as far as we know, that showed the OSR1 gene polymorphism rs12329305 and rs9936833 near FOXF1, as well as male sex, are risk factors for different types of congenital malformations in cases of stillborn/neonatal death.
- Published
- 2023