37 results on '"BRAIN initiative"'
Search Results
2. The BRAIN Initiative data-sharing ecosystem: Characteristics, challenges, benefits, and opportunities
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Sudhanvan Iyer, Kathryn Maxson Jones, Jill O Robinson, Nicole R Provenza, Dominique Duncan, Gabriel Lázaro-Muñoz, Amy L McGuire, Sameer A Sheth, and Mary A Majumder
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BRAIN initiative ,data sharing ,data archives ,neuroethics ,policy ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
In this paper, we provide an overview and analysis of the BRAIN Initiative data-sharing ecosystem. First, we compare and contrast the characteristics of the seven BRAIN Initiative data archives germane to data sharing and reuse, namely data submission and access procedures and aspects of interoperability. Second, we discuss challenges, benefits, and future opportunities, focusing on issues largely specific to sharing human data and drawing on N = 34 interviews with diverse stakeholders. The BRAIN Initiative-funded archive ecosystem faces interoperability and data stewardship challenges, such as achieving and maintaining interoperability of data and archives and harmonizing research participants’ informed consents for tiers of access for human data across multiple archives. Yet, a benefit of this distributed archive ecosystem is the ability of more specialized archives to adapt to the needs of particular research communities. Finally, the multiple archives offer ample raw material for network evolution in response to the needs of neuroscientists over time. Our first objective in this paper is to provide a guide to the BRAIN Initiative data-sharing ecosystem for readers interested in sharing and reusing neuroscience data. Second, our analysis supports the development of empirically informed policy and practice aimed at making neuroscience data more findable, accessible, interoperable, and reusable.
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- 2024
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3. Qualitative Phase: Codebook Development
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Turner-Essel, Laura, Ryan, Katie, and Roberts, Laura Weiss, editor
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- 2023
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4. The NIH’s BRAIN 2025 Agenda: Attention to Related Ethical Considerations
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Tsungmey, Tenzin, Paik, Jodi, Turner-Essel, Laura, Roberts, Laura Weiss, and Roberts, Laura Weiss, editor
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- 2023
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5. The Case for Neuroinnovation: Health Burdens Associated with Psychiatric, Addiction-Related, and Co-occurring Disorders
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Roberts, Laura Weiss, Ryan, Katie, and Roberts, Laura Weiss, editor
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- 2023
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6. The BRAIN Initiative Cell Census Consortium: Lessons Learned toward Generating a Comprehensive Brain Cell Atlas.
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Ecker, Joseph R, Geschwind, Daniel H, Kriegstein, Arnold R, Ngai, John, Osten, Pavel, Polioudakis, Damon, Regev, Aviv, Sestan, Nenad, Wickersham, Ian R, and Zeng, Hongkui
- Subjects
Brain ,Nerve Net ,Animals ,Humans ,Brain Mapping ,Pilot Projects ,Atlases as Topic ,BRAIN initiative ,anatomy ,cell census ,connectivity ,electrophysiology ,human brain ,mouse brain ,single-cell RNA-seq ,single-cell epigenomics ,single-cell transcriptomics ,Neurosciences ,Pediatric Research Initiative ,Genetics ,Underpinning research ,1.1 Normal biological development and functioning ,Neurological ,Psychology ,Cognitive Sciences ,Neurology & Neurosurgery - Abstract
A comprehensive characterization of neuronal cell types, their distributions, and patterns of connectivity is critical for understanding the properties of neural circuits and how they generate behaviors. Here we review the experiences of the BRAIN Initiative Cell Census Consortium, ten pilot projects funded by the U.S. BRAIN Initiative, in developing, validating, and scaling up emerging genomic and anatomical mapping technologies for creating a complete inventory of neuronal cell types and their connections in multiple species and during development. These projects lay the foundation for a larger and longer-term effort to generate whole-brain cell atlases in species including mice and humans.
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- 2017
7. National Institutes of Mental Health Data Archive: Privacy, Consent, and Diversity Considerations and Options for Improvement.
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Lee, Scott M. and Majumder, Mary A.
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HEALTH policy , *NEUROPSYCHOLOGY , *CULTURAL pluralism , *INFORMED consent (Medical law) , *DATABASE management , *QUALITY assurance , *ACCESS to information , *COMMUNICATION , *DATA security - Abstract
Data sharing is essential to further advance the field of neuropsychiatry. However, it raises significant ethical issues in the domains of privacy, consent, and diversity. We begin by considering the sensitive nature of much neuropsychiatric data. Next, we review relevant policies of the National Institutes of Mental Health (NIMH), a prominent funder in this field. Because data sharing in neuropsychiatry is in its infancy and rapidly evolving, the NIMH policies serve as a helpful starting point for examining ethical considerations related to the collection and distribution of neuropsychiatric data. However, we find gaps in their guidance in each of the three key ethical domains. Finally, we illustrate how examination of lessons and strategies from other contexts where sustained attention has already been given to these ethical issues may add value by suggesting specific opportunities for improvement. In particular, we highlight approaches including a three-tiered data access scheme, use of technology to enhance the data sharing component of the informed consent process, and evidence-based, targeted recruitment of underrepresented populations to support diverse data resources. Assessment of current policy and potentially helpful innovations in other fields is a necessary step in moving the field forward in an ethically responsible manner. [ABSTRACT FROM AUTHOR]
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- 2022
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8. The BRAIN Initiative: developing technology to catalyse neuroscience discovery
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Jorgenson, Lyric A, Newsome, William T, Anderson, David J, Bargmann, Cornelia I, Brown, Emery N, Deisseroth, Karl, Donoghue, John P, Hudson, Kathy L, Ling, Geoffrey SF, MacLeish, Peter R, Marder, Eve, Normann, Richard A, Sanes, Joshua R, Schnitzer, Mark J, Sejnowski, Terrence J, Tank, David W, Tsien, Roger Y, Ugurbil, Kamil, and Wingfield, John C
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Biological Sciences ,Biomedical and Clinical Sciences ,Neurosciences ,1.1 Normal biological development and functioning ,1.2 Psychological and socioeconomic processes ,Neurological ,Brain Mapping ,Humans ,Nerve Net ,Research Design ,BRAIN Initiative ,neural circuitry ,neurotechnology ,Medical and Health Sciences ,Evolutionary Biology ,Biological sciences ,Biomedical and clinical sciences - Abstract
The evolution of the field of neuroscience has been propelled by the advent of novel technological capabilities, and the pace at which these capabilities are being developed has accelerated dramatically in the past decade. Capitalizing on this momentum, the United States launched the Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative to develop and apply new tools and technologies for revolutionizing our understanding of the brain. In this article, we review the scientific vision for this initiative set forth by the National Institutes of Health and discuss its implications for the future of neuroscience research. Particular emphasis is given to its potential impact on the mapping and study of neural circuits, and how this knowledge will transform our understanding of the complexity of the human brain and its diverse array of behaviours, perceptions, thoughts and emotions.
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- 2015
9. Os novos desafios da ética da neurociência
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Cinara Nahra
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Ética da neurociência ,Neurotecnologias ,BRAIN initiative ,Cérebro humano ,Philosophy. Psychology. Religion ,Philosophy (General) ,B1-5802 ,Ethics ,BJ1-1725 - Abstract
O objetivo deste artigo é discutir os desafios que se colocam para a ética da neurociência na terceira década do século XXI. Discutimos aqui o projeto americano BRAIN initiative criado em 2013 e fazemos alguns questionamentos a este, especialmente no que se refere a participação e a pesquisa que está sendo feita pela agencia de pesquisa do Departamento de Defesa dos Estados Unidos da América (DARPA). Questionamos também a pesquisa sobre o cérebro e desenvolvimento de neurotecnologias que é feita pelo setor privado como as Tech giants e outras empresas bilionárias. Propomos que é necessário que haja uma grande reformulação na área da ética da neurociência com o objetivo de contribuir para colocar a neurociência e a neurotecnologia cada vez mais disponíveis para todos e a serviço da humanidade.
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- 2021
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10. The BRAIN Initiative and Neuroethics: Enabling and Enhancing Neuroscience Advances for Society.
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Eberwine, James and Kahn, Jeffrey
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BRAIN physiology , *BIOLOGICAL models , *CONSCIOUSNESS , *MEDICAL ethics , *MEDICAL technology , *NEUROSCIENCES , *PRIVACY , *HUMAN research subjects - Abstract
As the Brain Research through Advancing Neurotechnologyies, better known as the BRAIN Initiative moves forward at a rapid pace increasing attention has focused on neuroethics. The National Institutes of Health recently mandated a review of the progress of the BRAIN Initiative progress with the goal of fine-tuning its future directions. The BRAIN Working Group 2 focused its discussion on science while the BRAIN Neuroethics Subgroup focused on neuroethics. The Brain Neuroethics Subgroup deliberated for over a year collecting information and recommendations through in person and video meetings, a public one-day neuroethics symposium and soliciting input from neuroscientists and neuroethicist's. The resulting report entitled "The BRAIN Initiative and Neuroethics: Enabling and Enhancing Neuroscience Advances for Society" was accepted by Director of NIH in October of 2019. The recommendations span many BRAIN research neuroethics concerns including privacy considerations, the use of nonhuman primate model systems, neural modulation and enhancement, subject participation in BRAIN research and equity in neuroscience research. Further the group recommended a transformative project whose goal of detailing the scientific mechanisms and ethical underpinnings of consciousness is one of the most daunting issues that impact our perceptions of ourselves. It is anticipated that the report?s recommendations will provide a foundation or "roadmap" for ensuring that neuroethics and BRAIN research move forward as an integrated effort thereby insuring that BRAIN research is of the highest quality. [ABSTRACT FROM AUTHOR]
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- 2020
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11. A Fully Integrated RF-Powered Energy-Replenishing Current-Controlled Stimulator.
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Ha, Sohmyung, Kim, Chul, Park, Jiwoong, Cauwenberghs, Gert, and Mercier, Patrick P.
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This paper presents a fully-integrated current-controlled stimulator that is powered directly from on-chip coil antenna and achieves adiabatic energy-replenishing operation without any bulky external components. Adiabatic supply voltages, which can reach a differential range of up to 7.2 V, are directly generated from an on-chip 190-MHz resonant LC tank via a self-cascading/folding rectifier network, bypassing the losses that would otherwise be introduced by the 0.8 V system supply-generating rectifier and regulator. The stimulator occupies 0.22 mm $^2$ in a 180 nm silicon-on-insulator process and produces differential currents up to 145 $\mu$ A. Using a charge replenishing scheme, the stimulator redirects the charges accumulated across the electrodes to the system power supplies for 63.1% of stimulation energy recycling. To benchmark the efficiency of stimulation, a figure of merit termed the stimulator efficiency factor (SEF) is introduced. The adiabatic power rails and energy replenishment scheme enabled our stimulator to achieve an SEF of 6.0. [ABSTRACT FROM AUTHOR]
- Published
- 2019
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12. The History and Horizons of Microscale Neural Interfaces.
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Kozai, Takashi D. Y.
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BRAIN-computer interfaces ,NERVOUS system ,MICROSTRUCTURE - Abstract
Microscale neural technologies interface with the nervous system to record and stimulate brain tissue with high spatial and temporal resolution. These devices are being developed to understand the mechanisms that govern brain function, plasticity and cognitive learning, treat neurological diseases, or monitor and restore functions over the lifetime of the patient. Despite decades of use in basic research over days to months, and the growing prevalence of neuromodulation therapies, in many cases the lack of knowledge regarding the fundamental mechanisms driving activation has dramatically limited our ability to interpret data or fine-tune design parameters to improve long-term performance. While advances in materials, microfabrication techniques, packaging, and understanding of the nervous system has enabled tremendous innovation in the field of neural engineering, many challenges and opportunities remain at the frontiers of the neural interface in terms of both neurobiology and engineering. In this short-communication, we explore critical needs in the neural engineering field to overcome these challenges. Disentangling the complexities involved in the chronic neural interface problem requires simultaneous proficiency in multiple scientific and engineering disciplines. The critical component of advancing neural interface knowledge is to prepare the next wave of investigators who have simultaneous multi-disciplinary proficiencies with a diverse set of perspectives necessary to solve the chronic neural interface challenge. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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13. Evidence for verbal memory enhancement with electrical brain stimulation in the lateral temporal cortex.
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Kucewicz, Michal T., Berry, Brent M., Miller, Laura R., Khadjevand, Fatemeh, Ezzyat, Youssef, Stein, Joel M., Kremen, Vaclav, Brinkmann, Benjamin H., Wanda, Paul, Sperling, Michael R., Gorniak, Richard, Davis, Kathryn A., Jobst, Barbara C., Gross, Robert E., Lega, Bradley, Van Gompel, Jamie, Stead, S. Matt, Rizzuto, Daniel S., Kahana, Michael J., and Worrell, Gregory A.
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SENSORY perception , *VERBAL memory , *BRAIN , *BRAIN-computer interfaces , *BRAIN diseases , *APHASIA , *MEMORY , *T-test (Statistics) , *TEMPORAL lobe , *DEEP brain stimulation , *THERAPEUTICS - Abstract
Direct electrical stimulation of the human brain can elicit sensory and motor perceptions as well as recall of memories. Stimulating higher order association areas of the lateral temporal cortex in particular was reported to activate visual and auditory memory representations of past experiences (Penfield and Perot, 1963). We hypothesized that this effect could be used to modulate memory processing. Recent attempts at memory enhancement in the human brain have been focused on the hippocampus and other mesial temporal lobe structures, with a few reports of memory improvement in small studies of individual brain regions. Here, we investigated the effect of stimulation in four brain regions known to support declarative memory: hippocampus, parahippocampal neocortex, prefrontal cortex and temporal cortex. Intracranial electrode recordings with stimulation were used to assess verbal memory performance in a group of 22 patients (nine males). We show enhanced performance with electrical stimulation in the lateral temporal cortex (paired t-test, P = 0.0067), but not in the other brain regions tested. This selective enhancement was observed both on the group level, and for two of the four individual subjects stimulated in the temporal cortex. This study shows that electrical stimulation in specific brain areas can enhance verbal memory performance in humans.awx373media15704855796001. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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14. The History and Horizons of Microscale Neural Interfaces
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Takashi D. Y. Kozai
- Subjects
micromachine ,neuroscience ,biocompatibility ,training ,education ,diversity ,bias ,BRAIN Initiative ,multi-disciplinary ,micro-electromechanical systems (MEMS) ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
Microscale neural technologies interface with the nervous system to record and stimulate brain tissue with high spatial and temporal resolution. These devices are being developed to understand the mechanisms that govern brain function, plasticity and cognitive learning, treat neurological diseases, or monitor and restore functions over the lifetime of the patient. Despite decades of use in basic research over days to months, and the growing prevalence of neuromodulation therapies, in many cases the lack of knowledge regarding the fundamental mechanisms driving activation has dramatically limited our ability to interpret data or fine-tune design parameters to improve long-term performance. While advances in materials, microfabrication techniques, packaging, and understanding of the nervous system has enabled tremendous innovation in the field of neural engineering, many challenges and opportunities remain at the frontiers of the neural interface in terms of both neurobiology and engineering. In this short-communication, we explore critical needs in the neural engineering field to overcome these challenges. Disentangling the complexities involved in the chronic neural interface problem requires simultaneous proficiency in multiple scientific and engineering disciplines. The critical component of advancing neural interface knowledge is to prepare the next wave of investigators who have simultaneous multi-disciplinary proficiencies with a diverse set of perspectives necessary to solve the chronic neural interface challenge.
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- 2018
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15. Back to the Basics: Cnidarians Start to Fire.
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Bosch, Thomas C.G., Klimovich, Alexander, Domazet-Lošo, Tomislav, Gründer, Stefan, Holstein, Thomas W., Jékely, Gáspár, Miller, David J., Murillo-Rincon, Andrea P., Rentzsch, Fabian, Richards, Gemma S., Schröder, Katja, Technau, Ulrich, and Yuste, Rafael
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CNIDARIA physiology , *CNIDARIA , *NERVOUS system , *NEURAL circuitry , *ELECTROPHYSIOLOGY - Abstract
The nervous systems of cnidarians, pre-bilaterian animals that diverged close to the base of the metazoan radiation, are structurally simple and thus have great potential to reveal fundamental principles of neural circuits. Unfortunately, cnidarians have thus far been relatively intractable to electrophysiological and genetic techniques and consequently have been largely passed over by neurobiologists. However, recent advances in molecular and imaging methods are fueling a renaissance of interest in and research into cnidarians nervous systems. Here, we review current knowledge on the nervous systems of cnidarian species and propose that researchers should seize this opportunity and undertake the study of members of this phylum as strategic experimental systems with great basic and translational relevance for neuroscience. [ABSTRACT FROM AUTHOR]
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- 2017
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16. Silicon-Integrated High-Density Electrocortical Interfaces.
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Ha, Sohmyung, Akinin, Abraham, Park, Jiwoong, Kim, Chul, Wang, Hui, Maier, Christoph, Mercier, Patrick P., and Cauwenberghs, Gert
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ELECTROENCEPHALOGRAPHY ,NEURAL stimulation ,SILICON ,BRAIN research ,NEUROSCIENCES ,SPATIOTEMPORAL processes - Abstract
Recent demand and initiatives in brain research have driven significant interest toward developing chronically implantable neural interface systems with high spatiotemporal resolution and spatial coverage extending to the whole brain. Electroencephalography-based systems are noninvasive and cost efficient in monitoring neural activity across the brain, but suffer from fundamental limitations in spatiotemporal resolution. On the other hand, neural spike and local field potential (LFP) monitoring with penetrating electrodes offer higher resolution, but are highly invasive and inadequate for long-term use in humans due to unreliability in long-term data recording and risk for infection and inflammation. Alternatively, electrocorticography (ECoG) promises a minimally invasive, chronically implantable neural interface with resolution and spatial coverage capabilities that, with future technology scaling, may meet the needs of recently proposed brain initiatives. In this paper, we discuss the challenges and state-of-the-art technologies that are enabling next-generation fully implantable high-density ECoG interfaces, including details on electrodes, data acquisition front-ends, stimulation drivers, and circuits and antennas for wireless communications and power delivery. Along with state-of-the-art implantable ECoG interface systems, we introduce a modular ECoG system concept based on a fully encapsulated neural interfacing acquisition chip (ENIAC). Multiple ENIACs can be placed across the cortical surface, enabling dense coverage over wide area with high spatiotemporal resolution. The circuit and system level details of ENIAC are presented, along with measurement results. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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17. Neural networks: An overview of early research, current frameworks and new challenges.
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Prieto, Alberto, Prieto, Beatriz, Ortigosa, Eva Martinez, Ros, Eduardo, Pelayo, Francisco, Ortega, Julio, and Rojas, Ignacio
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ARTIFICIAL neural networks , *COMPUTER simulation , *NEUROPHYSIOLOGY , *PROBLEM solving , *COMPUTATIONAL neuroscience , *COMPUTATIONAL intelligence , *MACHINE learning - Abstract
This paper presents a comprehensive overview of modelling, simulation and implementation of neural networks, taking into account that two aims have emerged in this area: the improvement of our understanding of the behaviour of the nervous system and the need to find inspiration from it to build systems with the advantages provided by nature to perform certain relevant tasks. The development and evolution of different topics related to neural networks is described (simulators, implementations, and real-world applications) showing that the field has acquired maturity and consolidation, proven by its competitiveness in solving real-world problems. The paper also shows how, over time, artificial neural networks have contributed to fundamental concepts at the birth and development of other disciplines such as Computational Neuroscience, Neuro-engineering, Computational Intelligence and Machine Learning. A better understanding of the human brain is considered one of the challenges of this century, and to achieve it, as this paper goes on to describe, several important national and multinational projects and initiatives are marking the way to follow in neural-network research. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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18. Australian Brain Alliance.
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BRAIN function localization , *BRAIN research , *GOAL (Psychology) , *NEUROTECHNOLOGY (Bioengineering) , *MACHINE learning - Abstract
A proposal for an Australian Brain Initiative (ABI) is under development by members of the Australian Brain Alliance. Here we discuss the goals of the ABI, its areas of research focus, its context in the Australian research setting, and its necessity for ensuring continued success for Australian brain research. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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19. Neuroethics in the Age of Brain Projects.
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Greely, Henry T., Ramos, Khara M., and Grady, Christine
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NEUROETHICS , *BRAIN function localization , *NEUROSCIENCES , *BRAIN physiology , *NERVOUS system - Abstract
Neuroscience advances have brought important ethical questions. The recent launch of two large brain projects, the United States BRAIN Initiative and the European Union Human Brain Project, should accelerate progress in understanding the brain. This article examines neuroethics in those two projects, as well as its exploration by other efforts. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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20. Generalized analog thresholding for spike acquisition at ultralow sampling rates
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He, Bryan D., Wein, Alex, Varshney, Lav R., Kusuma, Julius, Richardson, Andrew G., and Srinivasan, Lakshminarayan
- Abstract
Efficient spike acquisition techniques are needed to bridge the divide from creating large multielectrode arrays (MEA) to achieving whole-cortex electrophysiology. In this paper, we introduce generalized analog thresholding (gAT), which achieves millisecond temporal resolution with sampling rates as low as 10 Hz. Consider the torrent of data from a single 1,000-channel MEA, which would generate more than 3 GB/min using standard 30-kHz Nyquist sampling. Recent neural signal processing methods based on compressive sensing still require Nyquist sampling as a first step and use iterative methods to reconstruct spikes. Analog thresholding (AT) remains the best existing alternative, where spike waveforms are passed through an analog comparator and sampled at 1 kHz, with instant spike reconstruction. By generalizing AT, the new method reduces sampling rates another order of magnitude, detects more than one spike per interval, and reconstructs spike width. Unlike compressive sensing, the new method reveals a simple closed-form solution to achieve instant (noniterative) spike reconstruction. The base method is already robust to hardware nonidealities, including realistic quantization error and integration noise. Because it achieves these considerable specifications using hardware-friendly components like integrators and comparators, generalized AT could translate large-scale MEAs into implantable devices for scientific investigation and medical technology. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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21. 'Knock once for yes, twice for no'.
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Perbal, Bernard
- Abstract
Previous studies have indicated that the expression of CCN3, a member of the CCN family of proteins, was tightly regulated during central nervous development and was associated with acquisition of cognitive functions in rats (Perbal, Mol Pathol 54(2):57-79, 2001; Su et al. Sheng Li Xue Bao 52(4):290-294, 2000) therefore suggesting that CCN3 might be involved in higher levels of physiological communication in the brain. In spite of the considerable amount of progress made into the understanding of neuronal organization and communication, reducing the knowledge gap between brain cellular biology and behavioral studies remains a huge challenge. Mind-to-mind communication has been the subject of numerous science fiction writings, intense research and emotional debates for many years. Scientists have tried for a long time to achieve transmission of messages between living subjects via non intrusive protocols. Thanks to the great progress made in imagery and neurosciences, another dimension of neuronal function in communication has now been documented. Two recent experimental demonstrations of direct brain to brain communication without physical contact (Grau et al. () Conscious brain-to-brain communication in humans using non-invasive technologies. PLoS One. Aug 19;9(8)- - Rao et al. () A direct brain-to-brain interface in humans. PLoS One. Nov 5;9(11)) pave the road to more sophisticated applications that could profoundly affect communications of humans with other humans, animals and machines. Although the wide use of such applications might seem a long way off, they raise quite a number of ethical, legal and societal issues. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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22. Dynamic and Succinct Statistical Analysis of Neuroscience Data.
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Kim, Sanggyun, Quinn, Christopher J., Kiyavash, Negar, and Coleman, Todd P.
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NEUROSCIENCES ,DATA ,BRAIN ,STATISTICS ,NEURAL circuitry - Abstract
Modern neuroscientific recording technologies are increasingly generating rich, multimodal data that provide unique opportunities to investigate the intricacies of brain function. However, our ability to exploit the dynamic, interactive interplay among neural processes is limited by the lack of appropriate analysis methods. In this paper, some challenging issues in neuroscience data analysis are described, and some general-purpose approaches to address such challenges are proposed. Specifically, we discuss statistical methodologies with a theme of loss functions, and hierarchical Bayesian inference methodologies from the perspective of constructing optimal mappings. These approaches are demonstrated on both simulated and experimentally acquired neural data sets to assess causal influences and track time-varying interactions among neural processes on a fine time scale. [ABSTRACT FROM PUBLISHER]
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- 2014
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23. Big data, open science and the brain: lessons learned from genomics.
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Choudhury, Suparna, Fishman, Jennifer R., McGowan, Michelle L., and Juengst, Eric T.
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BIG data ,GENOMICS ,HUMAN genome ,BRAIN diseases ,NEUROSCIENCES - Abstract
The BRAIN Initiative aims to break new ground in the scale and speed of data collection in neuroscience, requiring tools to handle data in the magnitude of yottabytes (10
24 ). The scale, investment and organization of it are being compared to the Human Genome Project (HGP), which has exemplified "big science" for biology. In line with the trend towards Big Data in genomic research, the promise of the BRAIN Initiative, as well as the European Human Brain Project, rests on the possibility to amass vast quantities of data to model the complex interactions between the brain and behavior and inform the diagnosis and prevention of neurological disorders and psychiatric disease. Advocates of this "data driven" paradigm in neuroscience argue that harnessing the large quantities of data generated across laboratories worldwide has numerous methodological, ethical and economic advantages, but it requires the neuroscience community to adopt a culture of data sharing and open access to benefit from them. In this article, we examine the rationale for data sharing among advocates and briefly exemplify these in terms of new "open neuroscience" projects. Then, drawing on the frequently invoked model of data sharing in genomics, we go on to demonstrate the complexities of data sharing, shedding light on the sociological and ethical challenges within the realms of institutions, researchers and participants, namely dilemmas around public/private interests in data, (lack of) motivation to share in the academic community, and potential loss of participant anonymity. Our paper serves to highlight some foreseeable tensions around data sharing relevant to the emergent "open neuroscience" movement. [ABSTRACT FROM AUTHOR]- Published
- 2014
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24. NDI: A Platform-Independent Data Interface and Database for Neuroscience Physiology and Imaging Experiments.
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García Murillo D, Zhao Y, Rogovin OS, Zhang K, Hu AW, Kim MR, Chen S, Wang Z, Keeley ZC, Shin DI, Suárez Casanova VM, Zhu Y, Martin L, Papaemmanouil O, and Van Hooser SD
- Subjects
- Ecosystem, Software, Vocabulary, Information Storage and Retrieval, Neurosciences
- Abstract
Collaboration in neuroscience is impeded by the difficulty of sharing primary data, results, and software across labs. Here, we introduce Neuroscience Data Interface (NDI), a platform-independent standard that allows an analyst to use and create software that functions independently from the format of the raw data or the manner in which the data are organized into files. The interface is rooted in a simple vocabulary that describes common apparatus and storage devices used in neuroscience experiments. Results of analyses, and analyses of analyses, are stored as documents in a scalable, queryable database that stores the relationships and history among the experiment elements and documents. The interface allows the development of an application ecosystem where applications can focus on calculation rather than data format or organization. This tool can be used by individual labs to exchange and analyze data, and it can serve to curate neuroscience data for searchable archives., (Copyright © 2022 García Murillo et al.)
- Published
- 2022
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25. The BRAIN Initiative Cell Census Consortium: Lessons Learned Toward Generating a Comprehensive Brain Cell Atlas
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John Ngai, Joseph R. Ecker, Pavel Osten, Ian R. Wickersham, Hongkui Zeng, Damon Polioudakis, Aviv Regev, Arnold R. Kriegstein, Nenad Sestan, Daniel H. Geschwind, Massachusetts Institute of Technology. Department of Biology, Massachusetts Institute of Technology. Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology. Media Laboratory, McGovern Institute for Brain Research at MIT, Regev, Aviv, and Wickersham, Ian R.
- Subjects
0301 basic medicine ,Pediatric Research Initiative ,anatomy ,Single cell transcriptomics ,1.1 Normal biological development and functioning ,single-cell epigenomics ,Pilot Projects ,Biology ,Brain mapping ,Brain Cell ,Article ,03 medical and health sciences ,Atlases as Topic ,BRAIN initiative ,Underpinning research ,Genetics ,Psychology ,Animals ,Humans ,human brain ,Brain Mapping ,cell census ,single-cell RNA-seq ,Neurology & Neurosurgery ,General Neuroscience ,Brain atlas ,Neurosciences ,Brain ,Census ,Multiple species ,electrophysiology ,Data science ,030104 developmental biology ,connectivity ,mouse brain ,Neurological ,Cognitive Sciences ,Nerve Net ,single-cell transcriptomics ,Neuroscience - Abstract
A comprehensive characterization of neuronal cell types, their distributions, and patterns of connectivity is critical for understanding the properties of neural circuits and how they generate behaviors. Here we review the experiences of the BRAIN Initiative Cell Census Consortium, ten pilot projects funded by the U.S. BRAIN Initiative, in developing, validating, and scaling up emerging genomic and anatomical mapping technologies for creating a complete inventory of neuronal cell types and their connections in multiple species and during development. These projects lay the foundation for a larger and longer-term effort to generate whole-brain cell atlases in species including mice and humans. In this Perspective, Ecker et al. discuss the efforts of the BRAIN Initiative Cell Census Consortium, ten pilot projects whose collective goal was to develop and validate methods for generating comprehensive atlases of neuronal cell types in the mammalian brain., BRAIN Initiative
- Published
- 2017
26. Subcellular Neural Probes from Single-Crystal Gold Nanowires
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Hosuk Kang, Youngdong Yoo, Jin Pyo Hong, Mijeong Kang, Huanan Zhang, Jae-Pyoung Ahn, Taejoon Kang, Seungmoon Jung, Juhyoun Kwak, Daejong Jeon, Bongsoo Kim, and Nicholas A. Kotov
- Subjects
Male ,Materials science ,Neuroprosthetics ,Nanowire ,Intracellular Space ,General Physics and Astronomy ,Nanotechnology ,neuroprosthetics ,paralysis ,Article ,Neural activity ,Mice ,neurodegenerative disease ,electrode miniaturization ,BRAIN initiative ,Miniaturization ,Animals ,General Materials Science ,brain−machine interface ,Brain–computer interface ,nanoelectrode ,Nanowires ,General Engineering ,subcellular-sized implants ,Brain ,single-neuron detection ,neural implants ,gold nanowire ,Electrodes, Implanted ,Mice, Inbred C57BL ,Brain implant ,Brain-Computer Interfaces ,Molecular Probes ,Electrode ,epilepsy ,Gold ,long-term neural recordings ,Single crystal - Abstract
Size reduction of neural electrodes is essential for improving the functionality of neuroprosthetic devices, developing potent therapies for neurological and neurodegenerative diseases, and long-term brain–computer interfaces. Typical neural electrodes are micromanufactured devices with dimensions ranging from tens to hundreds of micrometers. Their further miniaturization is necessary to reduce local tissue damage and chronic immunological reactions of the brain. Here we report the neural electrode with subcellular dimensions based on single-crystalline gold nanowires (NWs) with a diameter of ∼100 nm. Unique mechanical and electrical properties of defect-free gold NWs enabled their implantation and recording of single neuron-activities in a live mouse brain despite a ∼50× reduction of the size compared to the closest analogues. Reduction of electrode dimensions enabled recording of neural activity with improved spatial resolution and differentiation of brain activity in response to different social situations for mice. The successful localization of the epileptic seizure center was also achieved using a multielectrode probe as a demonstration of the diagnostics potential of NW electrodes. This study demonstrated the realism of single-neuron recording using subcellular-sized electrodes that may be considered a pivotal point for use in diverse studies of chronic brain diseases.
- Published
- 2014
27. Assessment of Mapping the Brain , a Novel Research and Neurotechnology Based Approach for the Modern Neuroscience Classroom.
- Author
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Johnson ZA, Sciolino NR, Plummer NW, Harrison PR, Jensen P, and Robertson SD
- Abstract
Neuroscience research is changing at an incredible pace due to technological innovation and recent national and global initiatives such as the BRAIN initiative. Given the wealth of data supporting the value of course-based undergraduate research experiences (CUREs) for students, we developed and assessed a neurotechnology CURE, Mapping the Brain . The goal of the course is to immerse undergraduate and graduate students in research and to explore technological advances in neuroscience. In the laboratory portion of the course, students pursued a hypothesis-driven, collaborative National Institutes of Health (NIH) research project. Using chemogenetic technology (Designer Receptors Exclusively Activated by Designer Drugs-DREADDs) and a recombinase-based intersectional genetic strategy, students mapped norepinephrine neurons, and their projections and explored the effects of activating these neurons in vivo . In lecture, students compared traditional and cutting-edge neuroscience methodologies, analyzed primary literature, designed hypothesis-based experiments, and discussed technological limitations of studying the brain. Over two consecutive years in the Program at North Carolina State University, we assessed student learning and perceptions of learning based on Society for Neuroscience's (SfN) core concepts and essential principles of neuroscience. Using analysis of student assignments and pre/post content and perception-based course surveys, we also assessed whether the course improved student research article analysis and neurotechnology assessment. Our analyses reveal new insights and pedagogical approaches for engaging students in research and improving their critical analysis of research articles and neurotechnologies. Our data also show that our multifaceted approach increased student confidence and promoted a data focused mentality when tackling research literature. Through the integration of authentic research and a neurotechnology focus, Mapping the Brain provides a unique model as a modern neuroscience laboratory course., (Copyright © 2021 Faculty for Undergraduate Neuroscience.)
- Published
- 2021
28. Agency Assessment of Ethical, Legal, and Societal Implications of Neuroscience and Technology Research and Its Relationship to the Presidential BRAIN Initiative
- Author
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Zafar, Sahar
- Subjects
BRAIN Initiative ,Ethical, Legal and Societal Implications ,Federal Agency Funding ,Biology, Neuroscience (0317) ,Research and Development ,Presidential Initiatives ,Communication -- Moral and ethical aspects - Abstract
In this study, I examined the societal views for neuroscience and technology research (neuro S&T), as reflected through interviews conducted with agency personnel and researchers. Thus, the aim of the study was to address the ethical and legal questions surrounding neuro S&T research by interviewing agency leaders and the scientific community, reviewing data from public surveys, and analyzing research and development funding allocations (specific to the BRAIN initiative), in order to better understand the influence of Presidential initiatives on agencies, the resulting science and technology outputs, and the effect these have on the general public. Consequently, this study was divided into three parts, (I) agency and researcher interview, (II) review of public survey data on neuro S&T, and (III) archival analysis of research and development funding specific to the BRAIN initiative for FY 2014, 2015 and 2016. The two programs chosen from NIH were (1) Next Generation Human Imaging and (2) Next Generation Human Invasive Devices. The two programs chosen from DARPA were (1) Hand Proprioception and Touch Interfaces (HAPTIX) and (2) Electrical Prescriptions (ElectRx). Through collection and analysis of the data in this study, our findings were able to address the central research question of this study, of how agencies that follow the Presidential BRAIN initiative address ethical, legal and societal views on neuro S&T research. Both agencies, DARPA and NIH, utilize internal and external mechanisms to control for potential risks associated with the funded research. The external boards, such as the ELSI panel used by DARPA and the NWG panel used by NIH, have members that are experts in all fields of neuroscience, as well as outside experts that provide a worldview of society and the impacts of these technologies. There are several different levels of oversight and internal and external review of all aspects of the research study. These mechanisms ensure all research is conducted with the highest ethical standards and minimizes all risks associated with the research. Researchers and agency personnel incorporate the recommendations from these experts in their programs to ensure safe distribution and use by the public upon release of these technologies. At the beginning of this study, we chose to explore how DARPA and NIH, two agencies that are so vastly different in their mission, vision, and structure along with Federal alignment (which changes the policies and guidelines they have to adhere to for ethical and legal issues; DARPA/DoD and NIH/DHHS), choose to participate in the BRAIN initiative. Through analysis of the data (H1), we saw that choosing to participate in the BRAIN initiative aligned with DARPA’s and NIH’s structure, mission, and vision. While we deduced, the responses should be very different due to the two agencies being completely different from each other, it seems in following the BRAIN initiative funding for extramural research, specifically neuro S&T research that can be translated into public use, DARPA and NIH follow a very similar path. However, H1 was rejected, due to the responses gathered after change in the Presidential administration. The responses showed no change in how agencies were participating or funding the BRAIN initiative. Therefore, it was concluded that based on data gathered to date, Presidential administration does not influence an agencies participation in an initiative. Through analysis of the interviews by the agency personnel and researchers (H2), we were able to see how agencies and researchers, find and resolve ethical and legal issues surrounding neuro S&T research, and weigh them based on the needs of the society. They use internal and external subject matter experts, cost-benefit analysis, risk-reducing strategies, oversight of data safety monitoring boards, and IRBs to ensure work occurs with the highest ethical standards. We saw that agencies and researchers are utilizing both internal and external aid to figure out and address all possible issues relating to neuro S&T. Public outreach programs to include open call meetings and webinars are being held by Neuroethics groups. These outreach programs through agencies have potential to influence the outlook of the public and decrease their apprehension on the use of these technologies. Communication between stakeholders and timely addressing of issues (such as continual access to treatment and care, post-trial obligations, responsible conduct, etc.) through policies, can lead to an increase in the public trust in these technologies. This study made it clear that agencies and researchers are very cautious about funding neuro S&T research. They have set up several checks and balances within agencies and research institutes to ensure all funded research occurs with the highest ethical and legal standards and increases the positive societal impact of these technologies. Since most of these devices are currently in their novice stages of development, their full impact on society will not be known until full deployment into society. Therefore, careful consideration into policies that address and place emphasis on the “human values” will ensure a positive impact on the society, as well as implementing Presidential initiatives.
- Published
- 2017
- Full Text
- View/download PDF
29. The BRAIN Initiative: developing technology to catalyse neuroscience discovery
- Author
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John C. Wingfield, Emery N. Brown, Kamil Ugurbil, Mark J. Schnitzer, Roger Y. Tsien, Peter R. MacLeish, David J. Anderson, John P. Donoghue, Eve Marder, David W. Tank, Kathy L. Hudson, Lyric A. Jorgenson, Joshua R. Sanes, William T. Newsome, Terrence J. Sejnowski, Geoffrey S.F. Ling, Cornelia I. Bargmann, Richard A. Normann, Karl Deisseroth, Institute for Medical Engineering and Science, Massachusetts Institute of Technology. Department of Brain and Cognitive Sciences, and Brown, Emery N.
- Subjects
Engineering ,1.1 Normal biological development and functioning ,Brain research ,Basic Behavioral and Social Science ,Brain mapping ,Medical and Health Sciences ,General Biochemistry, Genetics and Molecular Biology ,Neurotechnology ,Behavioral and Social Science ,Humans ,Pace ,Potential impact ,Brain Mapping ,BRAIN Initiative ,Evolutionary Biology ,business.industry ,Neurosciences ,Articles ,Biological Sciences ,Opinion piece ,ComputingMilieux_GENERAL ,Opinion Piece ,Mental Health ,Research Design ,Neurological ,neural circuitry ,neurotechnology ,Neuroscience research ,Nerve Net ,General Agricultural and Biological Sciences ,business ,Neuroscience - Abstract
The evolution of the field of neuroscience has been propelled by the advent of novel technological capabilities, and the pace at which these capabilities are being developed has accelerated dramatically in the past decade. Capitalizing on this momentum, the United States launched the Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative to develop and apply new tools and technologies for revolutionizing our understanding of the brain. In this article, we review the scientific vision for this initiative set forth by the National Institutes of Health and discuss its implications for the future of neuroscience research. Particular emphasis is given to its potential impact on the mapping and study of neural circuits, and how this knowledge will transform our understanding of the complexity of the human brain and its diverse array of behaviours, perceptions, thoughts and emotions., National Institutes of Health (U.S.), Howard Hughes Medical Institute
- Published
- 2015
30. BRAIN: innovative neurotechnologies for imaging and therapeutics
- Author
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George M. Church
- Subjects
BRAIN Initiative ,Genome Project ,education ,genomics ,Neurosciences ,imaging ,Brain ,Humans ,Nanotechnology ,Guest Editorial ,Neuroimaging - Abstract
Conceived with the aim of meeting the needs of the neurobiology and clinical communities, the Brain Research through Advancing Innovative Technologies (BRAIN) Initiative builds on the lessons learned from major projects in genetics, such as the Human Genome Project. It concentrates on the use of new imaging technologies in conjunction with genomics to inform therapeutic decisions.
- Published
- 2013
31. Big data, open science and the brain: lessons learned from genomics
- Author
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Jennifer R. Fishman, Eric T. Juengst, Suparna Choudhury, and Michelle L. McGowan
- Subjects
Open science ,data sharing ,Big data ,Neuroimaging ,Review Article ,lcsh:RC321-571 ,Data-driven ,03 medical and health sciences ,Behavioral Neuroscience ,Open Science ,0302 clinical medicine ,Open Neuroscience ,Human Genome Project ,Sociology ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Biological Psychiatry ,030304 developmental biology ,0303 health sciences ,Human Brain Project ,Data collection ,business.industry ,Data science ,Data sharing ,Psychiatry and Mental health ,Neuropsychology and Physiological Psychology ,Neurology ,Scale (social sciences) ,brain initiative ,business ,030217 neurology & neurosurgery ,Neuroscience ,Anonymity - Abstract
The BRAIN Initiative aims to break new ground in the scale and speed of data collection in neuroscience, requiring tools to handle data in the magnitude of yottabytes (10(24)). The scale, investment and organization of it are being compared to the Human Genome Project (HGP), which has exemplified "big science" for biology. In line with the trend towards Big Data in genomic research, the promise of the BRAIN Initiative, as well as the European Human Brain Project, rests on the possibility to amass vast quantities of data to model the complex interactions between the brain and behavior and inform the diagnosis and prevention of neurological disorders and psychiatric disease. Advocates of this "data driven" paradigm in neuroscience argue that harnessing the large quantities of data generated across laboratories worldwide has numerous methodological, ethical and economic advantages, but it requires the neuroscience community to adopt a culture of data sharing and open access to benefit from them. In this article, we examine the rationale for data sharing among advocates and briefly exemplify these in terms of new "open neuroscience" projects. Then, drawing on the frequently invoked model of data sharing in genomics, we go on to demonstrate the complexities of data sharing, shedding light on the sociological and ethical challenges within the realms of institutions, researchers and participants, namely dilemmas around public/private interests in data, (lack of) motivation to share in the academic community, and potential loss of participant anonymity. Our paper serves to highlight some foreseeable tensions around data sharing relevant to the emergent "open neuroscience" movement.
- Published
- 2014
- Full Text
- View/download PDF
32. Routing in the brain
- Author
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Daniel J. Graham
- Subjects
Theoretical computer science ,Computer science ,Neuroscience (miscellaneous) ,Network topology ,lcsh:RC321-571 ,Message switching ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Packet switching ,BRAIN initiative ,message switching ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,brain network ,business.industry ,Node (networking) ,connectome ,Opinion Article ,Network dynamics ,network dynamics ,cortex ,chemistry ,routing ,Connectome ,Key (cryptography) ,computer metaphor ,packet switching ,Artificial intelligence ,Routing (electronic design automation) ,business ,Neuroscience - Abstract
As mapping the genome was the great biological challenge a generation ago, so today is mapping brain network dynamics, thanks in part to President Obama's BRAIN initiative (Insel et al., 2013). Factors influencing the emergence of network dynamics, both in the brain and in other networks, can be roughly divided into three classes: those pertaining to node dynamics; those pertaining to topology (connectivity); and those pertaining to routing (how signals are passed across the network). But while single neuron dynamics are reasonably well understood, and while researchers have begun to elucidate key aspects of network topology in brains, very little work has been devoted to possible routing schemes in the brain (Graham and Rockmore, 2011). Indeed, brain networks must possess a systematic routing scheme, but current methods and models often make implicit assumptions about routing—or ignore it altogether.
- Published
- 2014
- Full Text
- View/download PDF
33. Neuroethics and the NIH BRAIN Initiative.
- Author
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Ramos KM, Rommelfanger KS, Greely HT, and Koroshetz WJ
- Abstract
The Brain Research through Advancing Innovative Neurotechnologies® (BRAIN) Initiative is focused on developing new tools and neurotechnologies to revolutionize our understanding of how the brain functions in health and disease, in large part to address the growing societal impact of neurological, mental health, and substance abuse disorders. Recent advances in neurotechnology are delivering unprecedented ways to interrogate and modulate brain function, and the BRAIN Initiative is focused on translation for human medical uses over the next decade. Since its inception, the NIH component of the BRAIN Initiative has utilized an iterative model of integrating ethics into the scientific trajectory of the Initiative, most recently with the creation of a Neuroethics Division of the NIH BRAIN Initiative Multi-Council Working Group. The Division serves as a resource of expertise, to help the BRAIN Initiative navigate issues involving ethics. Here we discuss the BRAIN Initiative, and its implications and aspirations for neuroethics. We also discuss new opportunities for collaboration and for integrating stakeholder voices.
- Published
- 2018
- Full Text
- View/download PDF
34. The BRAIN Initiative Provides a Unifying Context for Integrating Core STEM Competencies into a Neurobiology Course.
- Author
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Schaefer JE
- Abstract
The Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative introduced by the Obama Administration in 2013 presents a context for integrating many STEM competencies into undergraduate neuroscience coursework. The BRAIN Initiative core principles overlap with core STEM competencies identified by the AAAS Vision and Change report and other entities. This neurobiology course utilizes the BRAIN Initiative to serve as the unifying theme that facilitates a primary emphasis on student competencies such as scientific process, scientific communication, and societal relevance while teaching foundational neurobiological content such as brain anatomy, cellular neurophysiology, and activity modulation. Student feedback indicates that the BRAIN Initiative is an engaging and instructional context for this course. Course module organization, suitable BRAIN Initiative commentary literature, sample primary literature, and important assignments are presented.
- Published
- 2016
35. Alzheimer's: The Costliest Killer.
- Author
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Coy, Peter
- Subjects
ALZHEIMER'S disease research ,CLINICAL trials ,DISEASES in older people - Abstract
The article discusses the need to have adequate reasearch funds to make successful clinical trials in treating Alzheimer's disease, which is considered the financial sinkhole in the 21st century. According to Dr. Michael Shelanski of the Taud Institute at Columbia University Medical Center, the tight research budgets discourage the bright young people to make advances of the illness. The claims of politicians including U.S. President Barack Obama to support finance in research is cited.
- Published
- 2013
36. BRAIN: innovative neurotechnologies for imaging and therapeutics.
- Author
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Church GM
- Subjects
- Humans, Nanotechnology methods, Neuroimaging methods, Neurosciences methods, Brain pathology, Brain physiology, Nanotechnology trends, Neuroimaging trends, Neurosciences trends
- Abstract
Conceived with the aim of meeting the needs of the neurobiology and clinical communities, the Brain Research through Advancing Innovative Technologies (BRAIN) Initiative builds on the lessons learned from major projects in genetics, such as the Human Genome Project. It concentrates on the use of new imaging technologies in conjunction with genomics to inform therapeutic decisions.
- Published
- 2013
37. Brain project taps Bay Area minds.
- Author
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Erin Allday
- Abstract
Bay Area scientists who already have led remarkable efforts to explore and describe the complex depths of the human brain will play a critical role in the $100 million brain-mapping project announced by President Obama on Tuesday. [ABSTRACT FROM PUBLISHER]
- Published
- 2013
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