43 results on '"Bajjalieh SM"'
Search Results
2. A statistical framework for analyzing deep mutational scanning data
- Author
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Rubin, AF, Gelman, H, Lucas, N, Bajjalieh, SM, Papenfuss, AT, Speed, TP, Fowler, DM, Rubin, AF, Gelman, H, Lucas, N, Bajjalieh, SM, Papenfuss, AT, Speed, TP, and Fowler, DM
- Abstract
Deep mutational scanning is a widely used method for multiplex measurement of functional consequences of protein variants. We developed a new deep mutational scanning statistical model that generates error estimates for each measurement, capturing both sampling error and consistency between replicates. We apply our model to one novel and five published datasets comprising 243,732 variants and demonstrate its superiority in removing noisy variants and conducting hypothesis testing. Simulations show our model applies to scans based on cell growth or binding and handles common experimental errors. We implemented our model in Enrich2, software that can empower researchers analyzing deep mutational scanning data.
- Published
- 2017
3. 4 Synaptic vesicle proteins and exocytosis
- Author
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Scheller Rh and Bajjalieh Sm
- Subjects
Vesicle fusion ,Chemistry ,Endocytic cycle ,Munc-18 ,Synapsin ,Kiss-and-run fusion ,Synaptic vesicle ,Synaptotagmin 1 ,Exocytosis ,Cell biology - Published
- 1994
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4. Differential expression of synaptic vesicle protein 2 (SV2) isoforms
- Author
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Bajjalieh, SM, primary, Frantz, GD, additional, Weimann, JM, additional, McConnell, SK, additional, and Scheller, RH, additional
- Published
- 1994
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5. Synaptic vesicle protein 2: A multi-faceted regulator of secretion.
- Author
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Ciruelas K, Marcotulli D, and Bajjalieh SM
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- Animals, Calcium metabolism, Humans, Membrane Glycoproteins chemistry, Membrane Glycoproteins genetics, Membrane Glycoproteins metabolism, Molecular Targeted Therapy, Nerve Tissue Proteins chemistry, Nerve Tissue Proteins genetics, Nervous System Diseases pathology, Nerve Tissue Proteins metabolism, Synaptic Vesicles metabolism
- Abstract
Synaptic Vesicle Protein 2 (SV2) comprises a recently evolved family of proteins unique to secretory vesicles that undergo calcium-regulated exocytosis. In this review we consider SV2s' structural features, evolution, and function and discuss its therapeutic potential as the receptors for an expanding class of drugs used to treat epilepsy and cognitive decline., (Copyright © 2019 Elsevier Ltd. All rights reserved.)
- Published
- 2019
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6. Correction to: A statistical framework for analyzing deep mutational scanning data.
- Author
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Rubin AF, Gelman H, Lucas N, Bajjalieh SM, Papenfuss AT, Speed TP, and Fowler DM
- Abstract
Correction: After publication of our article [1] it was brought to our attention that a line of code was missing from our program to combine the within-replicate variance and between-replicate variance. This led to an overestimation of the standard errors calculated using the Enrich2 random-effects model.
- Published
- 2018
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7. A statistical framework for analyzing deep mutational scanning data.
- Author
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Rubin AF, Gelman H, Lucas N, Bajjalieh SM, Papenfuss AT, Speed TP, and Fowler DM
- Abstract
Deep mutational scanning is a widely used method for multiplex measurement of functional consequences of protein variants. We developed a new deep mutational scanning statistical model that generates error estimates for each measurement, capturing both sampling error and consistency between replicates. We apply our model to one novel and five published datasets comprising 243,732 variants and demonstrate its superiority in removing noisy variants and conducting hypothesis testing. Simulations show our model applies to scans based on cell growth or binding and handles common experimental errors. We implemented our model in Enrich2, software that can empower researchers analyzing deep mutational scanning data.
- Published
- 2017
- Full Text
- View/download PDF
8. Characterization of the Functional Domains of a Mammalian Voltage-Sensitive Phosphatase.
- Author
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Rosasco MG, Gordon SE, and Bajjalieh SM
- Subjects
- Amino Acid Sequence, Animals, Brain enzymology, HEK293 Cells, Humans, Hydrogen-Ion Concentration, Ion Channel Gating, Mice, Molecular Sequence Data, Phosphatidylinositol 4,5-Diphosphate metabolism, Protein Structure, Tertiary, Electrophysiological Phenomena, Phosphoric Monoester Hydrolases chemistry, Phosphoric Monoester Hydrolases metabolism
- Abstract
Voltage-sensitive phosphatases (VSPs) are proteins that directly couple changes in membrane electrical potential to inositol lipid phosphatase activity. VSPs thus couple two signaling pathways that are critical for cellular functioning. Although a number of nonmammalian VSPs have been characterized biophysically, mammalian VSPs are less well understood at both the physiological and biophysical levels. In this study, we aimed to address this gap in knowledge by determining whether the VSP from mouse, Mm-VSP, is expressed in the brain and contains a functional voltage-sensing domain (VSD) and a phosphatase domain. We report that Mm-VSP is expressed in neurons and is developmentally regulated. To address whether the functions of the VSD and phosphatase domain are retained in Mm-VSP, we took advantage of the modular nature of these domains and expressed each independently as a chimeric protein in a heterologous expression system. We found that the Mm-VSP VSD, fused to a viral potassium channel, was able to drive voltage-dependent gating of the channel pore. The Mm-VSP phosphatase domain, fused to the VSD of a nonmammalian VSP, was also functional: activation resulted in PI(4,5)P2 depletion that was sufficient to inhibit the PI(4,5)P2-regulated KCNQ2/3 channels. While testing the functionality of the VSD and phosphatase domain, we observed slight differences between the activities of Mm-VSP-based chimeras and those of nonmammalian VSPs. Although the properties of VSP chimeras may not completely reflect the properties of native VSPs, the differences we observed in voltage-sensing and phosphatase activity provide a starting point for future experiments to investigate the function of Mm-VSP and other mammalian VSPs. In conclusion, our data reveal that both the VSD and the lipid phosphatase domain of Mm-VSP are functional, indicating that Mm-VSP likely plays an important role in mouse neurophysiology., (Copyright © 2015 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2015
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9. Overlapping functions of stonin 2 and SV2 in sorting of the calcium sensor synaptotagmin 1 to synaptic vesicles.
- Author
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Kaempf N, Kochlamazashvili G, Puchkov D, Maritzen T, Bajjalieh SM, Kononenko NL, and Haucke V
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- Animals, Cells, Cultured, Mice, Neurons metabolism, Adaptor Proteins, Vesicular Transport physiology, Calcium metabolism, Membrane Glycoproteins physiology, Nerve Tissue Proteins physiology, Synaptic Vesicles metabolism, Synaptotagmin I metabolism
- Abstract
Neurotransmission involves the calcium-regulated exocytic fusion of synaptic vesicles (SVs) and the subsequent retrieval of SV membranes followed by reformation of properly sized and shaped SVs. An unresolved question is whether each SV protein is sorted by its own dedicated adaptor or whether sorting is facilitated by association between different SV proteins. We demonstrate that endocytic sorting of the calcium sensor synaptotagmin 1 (Syt1) is mediated by the overlapping activities of the Syt1-associated SV glycoprotein SV2A/B and the endocytic Syt1-adaptor stonin 2 (Stn2). Deletion or knockdown of either SV2A/B or Stn2 results in partial Syt1 loss and missorting of Syt1 to the neuronal surface, whereas deletion of both SV2A/B and Stn2 dramatically exacerbates this phenotype. Selective missorting and degradation of Syt1 in the absence of SV2A/B and Stn2 impairs the efficacy of neurotransmission at hippocampal synapses. These results indicate that endocytic sorting of Syt1 to SVs is mediated by the overlapping activities of SV2A/B and Stn2 and favor a model according to which SV protein sorting is guarded by both cargo-specific mechanisms as well as association between SV proteins.
- Published
- 2015
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10. Amyloid precursor protein knockout diminishes synaptic vesicle proteins at the presynaptic active zone in mouse brain.
- Author
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Laßek M, Weingarten J, Acker-Palmer A, Bajjalieh SM, Muller U, and Volknandt W
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- Amyloid beta-Protein Precursor genetics, Animals, Brain ultrastructure, Membrane Glycoproteins metabolism, Mice, Mice, Inbred C57BL, Mice, Knockout, Nerve Tissue Proteins metabolism, Presynaptic Terminals ultrastructure, Subcellular Fractions metabolism, Subcellular Fractions ultrastructure, Synaptic Vesicles ultrastructure, Synaptotagmin I metabolism, Amyloid beta-Protein Precursor deficiency, Gene Expression Regulation genetics, Presynaptic Terminals metabolism, Synaptic Vesicles metabolism
- Abstract
The amyloid precursor protein (APP) has previously been allocated to an organellar pool residing in the Golgi apparatus and in endosomal compartments, and in its mature form to a presynaptic active zone-localized pool. By analyzing homozygous APP knockout mice we evaluated the impact of APP on synaptic vesicle protein abundance at synaptic release sites. Following immunopurification of synaptic vesicles and the attached presynaptic plasma membrane, individual proteins were subjected to quantitative Western blot analysis. We demonstrate that APP deletion in knockout animals reduces the abundance of the synaptic vesicle proteins synaptophysin, synaptotagmin-1, and SV2A at the presynaptic active zone. Conversely, deletion of the additional APP family members, APLP1 and APLP2 resulted in an increase in synaptophysin, synaptogamin-1, and SV2A abundance. When transmembrane APP is lacking in APPsα-KI/APLP2-KO mice synaptic vesicle protein abundance corresponds to that in APP -KO mice. Deletion of the synaptic vesicle protein 2 (SV2) A and B had no effect on APP and synaptophysin abundance but decreased synaptotagmin-1. Our data suggest that APP controls the abundance of synaptic vesicle proteins at the presynaptic release sites and thus impacts synaptic transmission.
- Published
- 2014
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11. Loss of the SV2-like protein SVOP produces no apparent deficits in laboratory mice.
- Author
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Yao J, de la Iglesia HO, and Bajjalieh SM
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- Animals, Brain metabolism, Cells, Cultured, Male, Membrane Glycoproteins genetics, Membrane Glycoproteins metabolism, Mice, Mice, Inbred BALB C, Mice, Knockout, Nerve Tissue Proteins genetics, Vesicular Transport Proteins genetics, Nerve Tissue Proteins metabolism, Vesicular Transport Proteins metabolism
- Abstract
Neurons express two families of transporter-like proteins - Synaptic Vesicle protein 2 (SV2A, B, and C) and SV2-related proteins (SVOP and SVOPL). Both families share structural similarity with the Major Facilitator (MF) family of transporters. SV2 is present in all neurons and endocrine cells, consistent with it playing a key role in regulated exocytosis. Like SV2, SVOP is expressed in all brain regions, with highest levels in cerebellum, hindbrain and pineal gland. Furthermore, SVOP is expressed earlier in development than SV2 and is one of the neuronal proteins whose expression declines most during aging. Although SV2 is essential for survival, it is not required for development. Because significant levels of neurotransmission remain in the absence of SV2 it has been proposed that SVOP performs a function similar to that of SV2 that mitigates the phenotype of SV2 knockout mice. To test this, we generated SVOP knockout mice and SVOP/SV2A/SV2B triple knockout mice. Mice lacking SVOP are viable, fertile and phenotypically normal. Measures of neurotransmission and behaviors dependent on the cerebellum and pineal gland revealed no measurable phenotype. SVOP/SV2A/SV2B triple knockout mice did not display a phenotype more severe than mice harboring the SV2A/SV2B gene deletions. These findings support the interpretation that SVOP performs a unique, though subtle, function that is not necessary for survival under normal conditions.
- Published
- 2013
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12. Single-axonal organelle analysis method reveals new protein-motor associations.
- Author
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Sgro AE, Bajjalieh SM, and Chiu DT
- Subjects
- Animals, Cells, Cultured, Fluorescent Antibody Technique, Hippocampus cytology, Kinesins physiology, Membrane Glycoproteins metabolism, Mice, Microfluidic Analytical Techniques, Microscopy, Confocal, Nerve Tissue Proteins metabolism, Neurons cytology, Neurons physiology, Organelles metabolism, Synaptophysin metabolism, Transport Vesicles metabolism, Transport Vesicles physiology, Vesicle-Associated Membrane Protein 2 metabolism, Axonal Transport physiology, Kinesins metabolism, Neurons metabolism, Synaptic Vesicles metabolism, Vesicular Transport Proteins metabolism
- Abstract
Axonal transport of synaptic vesicle proteins is required to maintain neurons' ability to communicate via synaptic transmission. Neurotransmitter-containing synaptic vesicles are assembled at synaptic terminals via highly regulated endocytosis of membrane proteins. These synaptic vesicle membrane proteins are synthesized in the cell body and transported to synapses in carrier vesicles that make their way down axons via microtubule-based transport utilizing kinesin molecular motors. Identifying the cargos that each kinesin motor protein carries from the cell bodies to the synapse is key to understanding both diseases caused by motor protein dysfunction and how synaptic vesicles are assembled. However, obtaining a bulk sample of axonal transport complexes from central nervous system (CNS) neurons to use for identification of their contents has posed a challenge to researchers. To obtain axonal carrier vesicles from primary cultured neurons, we fabricated a microfluidic chip designed to physically isolate axons from dendrites and cell bodies and developed a method to remove bulk axonal samples and label their contents. Synaptic vesicle protein carrier vesicles in these samples were labeled with antibodies to the synaptic vesicle proteins p38, SV2A, and VAMP2, and the anterograde axonal transport motor KIF1A, after which antibody overlap was evaluated using single-organelle TIRF microscopy. This work confirms a previously discovered association between KIF1A and p38 and shows that KIF1A also transports SV2A- and VAMP2-containing carrier vesicles.
- Published
- 2013
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13. Single-molecule fluorescence quantification with a photobleached internal standard.
- Author
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Gadd JC, Fujimoto BS, Bajjalieh SM, and Chiu DT
- Subjects
- Animals, Green Fluorescent Proteins analysis, Green Fluorescent Proteins chemistry, Hydrazines analysis, Hydrazines chemistry, Mice, Mice, Transgenic, Synaptic Vesicles chemistry, Fluorescent Dyes analysis, Fluorescent Dyes chemistry, Photobleaching
- Abstract
In cellular and molecular biology, fluorophores are employed to aid in tracking and quantifying molecules involved in cellular function. We previously developed a sensitive single-molecule quantification technique to count the number of proteins and the variation of the protein number over the population of individual subcellular organelles. However, environmental effects on the fluorescent intensity of fluorophores can make it difficult to accurately quantify proteins using these sensitive techniques. In this letter, we demonstrate the use of photobleaching to extract an accurate single-molecule calibration intensity distribution from the sample directly to avoid any differences in environment that may alter the count. Using this technique, we were able to show that goat antimouse IgG antibody labeled with Alexa Fluor 488, an environmentally insensitive fluorophore, exhibited an average fluorescence equivalent to 4.6 single fluorophores. SynaptopHluorin vesicles, which contain the environmentally sensitive green fluorescent protein, exhibited an average of 4.4 single green fluorescent proteins per vesicle.
- Published
- 2012
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14. Determining the number of specific proteins in cellular compartments by quantitative microscopy.
- Author
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Mutch SA, Gadd JC, Fujimoto BS, Kensel-Hammes P, Schiro PG, Bajjalieh SM, and Chiu DT
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- Algorithms, Cell Compartmentation, Cytoplasmic Structures metabolism, Image Processing, Computer-Assisted methods, Microfluidics methods, Microscopy, Fluorescence methods, Proteins chemistry, Software, Fluorescent Antibody Technique, Proteins analysis
- Abstract
This protocol describes a method for determining both the average number and variance of proteins, in the few to tens of copies, in isolated cellular compartments such as organelles and protein complexes. Other currently available protein quantification techniques either provide an average number, but lack information on the variance, or they are not suitable for reliably counting proteins present in the few to tens of copies. This protocol entails labeling of the cellular compartment with fluorescent primary-secondary antibody complexes, total internal reflection fluorescence microscopic imaging of the cellular compartment, digital image analysis and deconvolution of the fluorescence intensity data. A minimum of 2.5 d is required to complete the labeling, imaging and analysis of a set of samples. As an illustrative example, we describe in detail the procedure used to determine the copy number of proteins in synaptic vesicles. The same procedure can be applied to other organelles or signaling complexes.
- Published
- 2011
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15. Measurements of the acidification kinetics of single SynaptopHluorin vesicles.
- Author
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Budzinski KL, Zeigler M, Fujimoto BS, Bajjalieh SM, and Chiu DT
- Subjects
- Animals, Brain cytology, Chlorides metabolism, Endocytosis, Glutamates metabolism, Green Fluorescent Proteins genetics, Hydrogen-Ion Concentration, Kinetics, Mice, Neurotransmitter Agents metabolism, Permeability, Protons, Recombinant Fusion Proteins genetics, Spectrometry, Fluorescence, Transgenes genetics, Green Fluorescent Proteins metabolism, Recombinant Fusion Proteins metabolism, Synaptic Vesicles chemistry, Synaptic Vesicles metabolism
- Abstract
Uptake of neurotransmitters into synaptic vesicles is driven by the proton gradient established across the vesicle membrane. The acidification of synaptic vesicles, therefore, is a crucial component of vesicle function. Here we present measurements of acidification rate constants from isolated, single synaptic vesicles. Vesicles were purified from mice expressing a fusion protein termed SynaptopHluorin created by the fusion of VAMP/synaptobrevin to the pH-sensitive super-ecliptic green fluorescent protein. We calibrated SynaptopHluorin fluorescence to determine the relationship between fluorescence intensity and internal vesicle pH, and used these values to measure the rate constant of vesicle acidification. We also measured the effects of ATP, glutamate, and chloride on acidification. We report acidification time constants of 500 ms to 1 s. The rate of acidification increased with increasing extravesicular concentrations of ATP and glutamate. These data provide an upper and a lower bound for vesicle acidification and indicate that vesicle readiness can be regulated by changes in energy and transmitter availability., (Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.)
- Published
- 2011
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16. A high-throughput method for generating uniform microislands for autaptic neuronal cultures.
- Author
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Sgro AE, Nowak AL, Austin NS, Custer KL, Allen PB, Chiu DT, and Bajjalieh SM
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- Animals, Cell Communication physiology, Cells, Cultured, Dendrites physiology, Hippocampus cytology, Hippocampus physiology, Mice, Neurons physiology, Synapses physiology, Synaptic Transmission physiology, Cell Culture Techniques methods, Neurons cytology
- Abstract
Generating microislands of culture substrate on coverslips by spray application of poly-d lysine is a commonly used method for culturing isolated neurons that form self (autaptic) synapses. This preparation has multiple advantages for studying synaptic transmission in isolation; however, generating microislands by spraying produces islands of non-uniform size and thus cultures vary widely in the number of islands containing single neurons. To address these problems, we developed a high-throughput method for reliably generating uniformly shaped microislands of culture substrate. Stamp molds formed of poly(dimethylsiloxane) (PDMS) were fabricated with arrays of circles and used to generate stamps made of 9.2% agarose. The agarose stamps were capable of loading sufficient poly D-lysine and collagen dissolved in acetic acid to rapidly generate coverslips containing at least 64 microislands per coverslip. When hippocampal neurons were cultured on these coverslips, there were significantly more single-neuron islands per coverslip. We noted that single neurons tended to form one of three distinct neurite-arbor morphologies, which varied with island size and the location of the cell body on the island. To our surprise, the number of synapses per autaptic neuron did not correlate with arbor shape or island size, suggesting that other factors regulate the number of synapses formed by isolated neurons. The stamping method we report can be used to increase the number of single-neuron islands per culture and aid in the rapid visualization of microislands., (Copyright © 2011 Elsevier B.V. All rights reserved.)
- Published
- 2011
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17. Protein quantification at the single vesicle level reveals that a subset of synaptic vesicle proteins are trafficked with high precision.
- Author
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Mutch SA, Kensel-Hammes P, Gadd JC, Fujimoto BS, Allen RW, Schiro PG, Lorenz RM, Kuyper CL, Kuo JS, Bajjalieh SM, and Chiu DT
- Subjects
- Animals, Brain metabolism, In Vitro Techniques, Protein Transport, Rats, Rats, Sprague-Dawley, Membrane Proteins metabolism, Synaptic Vesicles metabolism
- Abstract
Protein sorting represents a potential point of regulation in neurotransmission because it dictates the protein composition of synaptic vesicles, the organelle that mediates transmitter release. Although the average number of most vesicle proteins has been estimated using bulk biochemical approaches (Takamori et al., 2006), no information exists on the intervesicle variability of protein number, and thus on the precision with which proteins are sorted to vesicles. To address this, we adapted a single molecule quantification approach (Mutch et al., 2007) and used it to quantify both the average number and variance of seven integral membrane proteins in brain synaptic vesicles. We report that four vesicle proteins, SV2, the proton ATPase, Vglut1, and synaptotagmin 1, showed little intervesicle variation in number, indicating they are sorted to vesicles with high precision. In contrast, the apparent number of VAMP2/synaptobrevin 2, synaptophysin, and synaptogyrin demonstrated significant intervesicle variability. These findings place constraints on models of protein function at the synapse and raise the possibility that changes in vesicle protein expression affect vesicle composition and functioning.
- Published
- 2011
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18. Levetiracetam reverses synaptic deficits produced by overexpression of SV2A.
- Author
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Nowack A, Malarkey EB, Yao J, Bleckert A, Hill J, and Bajjalieh SM
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- Animals, Green Fluorescent Proteins metabolism, Levetiracetam, Mice, Mice, Inbred C57BL, Mice, Knockout, Neurons drug effects, Neurons metabolism, Neurotransmitter Agents metabolism, Phenotype, Piracetam pharmacology, Presynaptic Terminals drug effects, Presynaptic Terminals metabolism, Protein Transport drug effects, Rats, Recombinant Fusion Proteins metabolism, Synaptotagmins metabolism, Membrane Glycoproteins metabolism, Nerve Tissue Proteins metabolism, Piracetam analogs & derivatives, Synapses drug effects, Synapses metabolism
- Abstract
Levetiracetam is an FDA-approved drug used to treat epilepsy and other disorders of the nervous system. Although it is known that levetiracetam binds the synaptic vesicle protein SV2A, how drug binding affects synaptic functioning remains unknown. Here we report that levetiracetam reverses the effects of excess SV2A in autaptic hippocampal neurons. Expression of an SV2A-EGFP fusion protein produced a ∼1.5-fold increase in synaptic levels of SV2, and resulted in reduced synaptic release probability. The overexpression phenotype parallels that seen in neurons from SV2 knockout mice, which experience severe seizures. Overexpression of SV2A also increased synaptic levels of the calcium-sensor protein synaptotagmin, an SV2-binding protein whose stability and trafficking are regulated by SV2. Treatment with levetiracetam rescued normal neurotransmission and restored normal levels of SV2 and synaptotagmin at the synapse. These results indicate that changes in SV2 expression in either direction impact neurotransmission, and suggest that levetiracetam may modulate SV2 protein interactions.
- Published
- 2011
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19. SV2 regulates neurotransmitter release via multiple mechanisms.
- Author
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Nowack A, Yao J, Custer KL, and Bajjalieh SM
- Subjects
- Animals, Cells, Cultured, Membrane Glycoproteins genetics, Mice, Mice, Knockout, Mutation, Nerve Tissue Proteins genetics, Neurons cytology, Neurons metabolism, Patch-Clamp Techniques, Protein Isoforms genetics, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Synapses metabolism, Exocytosis physiology, Membrane Glycoproteins metabolism, Nerve Tissue Proteins metabolism, Neurotransmitter Agents metabolism, Protein Isoforms metabolism, Synaptic Transmission physiology
- Abstract
Among the proteins that mediate calcium-stimulated transmitter release, the synaptic vesicle protein 2 (SV2) stands out as a unique modulator specific to the neurons and endocrine cells of vertebrates. In synapses, SV2 regulates the expression and trafficking of the calcium sensor protein synaptotagmin, an action consistent with the reduced calcium-mediated exocytosis observed in neurons lacking SV2. Yet SV2 contains amino acid motifs consistent with it performing other actions that could regulate presynaptic functioning and that might underlie the mechanism of drug action. To test the role of these functional motifs, we performed a mutagenic analysis of SV2A and assessed the ability of mutant SV2A proteins to restore normal synaptic transmission in neurons from SV2A/B knockout mice. We report that SV2A-R231Q, harboring a mutation in a canonical transporter motif, restored normal synaptic depression (a measure of release probability and signature deficit of neurons lacking SV2). In contrast, normal synaptic depression was not restored by SV2A-W300A and SV2A-W666A, harboring mutations of conserved tryptophans in the 5th and 10th transmembrane domains. Although they did not rescue normal neurotransmission, SV2A-W300A and SV2A-W666A did restore normal levels of synaptotagmin expression and internalization. This indicates that tryptophans 300 and 666 support an essential action of SV2 that is unrelated to its role in synaptotagmin expression or trafficking. These results indicate that SV2 performs at least two actions at the synapse that contribute to neurotransmitter release.
- Published
- 2010
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20. Cotrafficking of SV2 and synaptotagmin at the synapse.
- Author
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Yao J, Nowack A, Kensel-Hammes P, Gardner RG, and Bajjalieh SM
- Subjects
- Animals, Cells, Cultured, Endocytosis genetics, Membrane Glycoproteins deficiency, Membrane Glycoproteins genetics, Mice, Mice, Knockout, Nerve Tissue Proteins deficiency, Nerve Tissue Proteins genetics, Protein Binding genetics, Protein Binding physiology, Protein Transport genetics, Protein Transport physiology, Rats, Synapses genetics, Synaptotagmins biosynthesis, Synaptotagmins genetics, Tyrosine genetics, Membrane Glycoproteins metabolism, Membrane Glycoproteins physiology, Nerve Tissue Proteins metabolism, Nerve Tissue Proteins physiology, Synapses metabolism, Synaptotagmins metabolism
- Abstract
Synaptic vesicles are specialized cycling endosomes that contain a unique constellation of membrane proteins. Proteins are sorted to vesicles by short amino acid sequences that serve as binding sites for clathrin adaptor proteins. Here we show that a tyrosine-based endocytosis motif in the vesicle protein SV2 is required for trafficking to synaptic vesicles of both SV2 and the calcium sensor protein synaptotagmin. Aberrant neurotransmission in cultured hippocampal neurons lacking SV2 was rescued by expression of wild-type SV2A, but not by SV2A-Y46A, a mutant containing a disrupted endocytosis motif in SV2A's cytoplasmic N terminus. Neurons expressing SV2A-Y46A had significantly more SV2 on the plasma membrane, indicating reduced internalization. A screen for proteins that preferentially bound wild-type SV2A identified multiple endocytosis-related proteins, and in vitro binding studies confirmed binding to the clathrin adaptors AP2, EPS15, and amphiphysin 2/Bin1. Neurons lacking SV2 contained less synaptotagmin and had a higher proportion of synaptotagmin on the plasma membrane. Expression of either wild-type SV2A or SV2A-Y46A restored synaptotagmin expression levels; however, only wild-type SV2A restored a normal proportion of synaptotagmin on the plasma membrane. These findings indicate that SV2 influences the expression and trafficking of synaptotagmin via separate mechanisms. Synaptic vesicles immunoisolated from SV2A/B double knock-out mice had significantly less synaptotagmin than vesicles isolated from wild-type mice. Our results indicate that SV2 plays a major role in regulating the amount of synaptotagmin in synaptic vesicles and provide an explanation for the observation that synapses lacking SV2 have fewer vesicles competent for calcium-induced fusion.
- Published
- 2010
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21. Large structural change in isolated synaptic vesicles upon loading with neurotransmitter.
- Author
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Budzinski KL, Allen RW, Fujimoto BS, Kensel-Hammes P, Belnap DM, Bajjalieh SM, and Chiu DT
- Subjects
- Animals, Biophysics methods, Brain metabolism, Calcium chemistry, Cryoelectron Microscopy methods, Glutamic Acid chemistry, Membrane Proteins chemistry, Mice, Protein Isoforms, Rats, Spectrometry, Fluorescence methods, Synaptic Vesicles metabolism, Lipids chemistry, Neurotransmitter Agents metabolism, Synaptic Vesicles chemistry
- Abstract
The size of a synaptic vesicle (SV) is generally thought to be determined by the amount of lipid and membrane protein it contains. Once formed, it is thought to remain constant in size. Using fluorescence correlation spectroscopy and cryogenic electron microscopy, we show that glutamatergic vesicles reversibly increase their size upon filling with glutamate. The increase ( approximately 25% in diameter) corresponds to an increase in surface area of approximately 50% and in volume of approximately 100%. This large size increase implies a large structural change in the SV upon loading with neurotransmitters. Vesicles lacking SV protein 2A (SV2A) did not manifest a change in size after loading with glutamate, indicating that SV2A is required for this phenomenon.
- Published
- 2009
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22. Loss of the Synaptic Vesicle Protein SV2B results in reduced neurotransmission and altered synaptic vesicle protein expression in the retina.
- Author
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Morgans CW, Kensel-Hammes P, Hurley JB, Burton K, Idzerda R, McKnight GS, and Bajjalieh SM
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- Animals, Blotting, Western, Electroretinography, Immunohistochemistry, Male, Membrane Glycoproteins genetics, Mice, Nerve Tissue Proteins genetics, Retina physiology, Membrane Glycoproteins physiology, Nerve Tissue Proteins physiology, Retina metabolism, Synaptic Transmission physiology
- Abstract
The Synaptic Vesicle Protein 2 (SV2) family of transporter-like proteins is expressed exclusively in vesicles that undergo calcium-regulated exocytosis. Of the three isoforms expressed in mammals, SV2B is the most divergent. Here we report studies of SV2B location and function in the retina. Immunolabeling studies revealed that SV2B is detected in rod photoreceptor synaptic terminals where it is the primary isoform. In mice lacking SV2B, synaptic transmission at the synapse between photoreceptors and bipolar neurons was decreased, as evidenced by a significant reduction in the amplitude of the b-wave in electroretinogram recordings. Quantitative immunoblot analyses of whole eyes revealed that loss of SV2B was associated with reduced levels of synaptic vesicle proteins including synaptotagmin, VAMP, synaptophysin and the vesicular glutamate transporter V-GLUT1. Immunolabeling studies revealed that SV2B is detected in rod photoreceptor synaptic terminals where it is the primary isoform. Thus, SV2B contributes to the modulation of synaptic vesicle exocytosis and plays a significant role in regulating synaptic protein content.
- Published
- 2009
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23. SVOP is a nucleotide binding protein.
- Author
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Yao J and Bajjalieh SM
- Subjects
- Adenosine Triphosphate analogs & derivatives, Adenosine Triphosphate chemistry, Adenosine Triphosphate metabolism, Animals, Azides chemistry, Azides metabolism, Binding Sites, Cells, Cultured, Guanosine Triphosphate metabolism, Humans, NAD metabolism, Protein Structure, Tertiary, Rats, Nucleotides metabolism, Vesicular Transport Proteins metabolism
- Abstract
Background: Synaptic Vesicle Protein 2 (SV2) and SV2-related protein (SVOP) are transporter-like proteins that localize to neurotransmitter-containing vesicles. Both proteins share structural similarity with the major facilitator (MF) family of small molecule transporters. We recently reported that SV2 binds nucleotides, a feature that has also been reported for another MF family member, the human glucose transporter 1 (Glut1). In the case of Glut1, nucleotide binding affects transport activity. In this study, we determined if SVOP also binds nucleotides and assessed its nucleotide binding properties., Methodology/principal Findings: We performed in vitro photoaffinity labeling experiments with the photoreactive ATP analogue, 8-azido-ATP[gamma] biotin and purified recombinant SVOP-FLAG fusion protein. We found that SVOP is a nucleotide-binding protein, although both its substrate specificity and binding site differ from that of SV2. Within the nucleotides tested, ATP, GTP and NAD show same level of inhibition on SVOP-FLAG labeling. Dose dependent studies indicated that SVOP demonstrates the highest affinity for NAD, in contrast to SV2, which binds both NAD and ATP with equal affinity. Mapping of the binding site revealed a single region spanning transmembrane domains 9-12, which contrasts to the two binding sites in the large cytoplasmic domains in SV2A., Conclusions/significance: SVOP is the third MF family member to be found to bind nucleotides. Given that the binding sites are unique in SVOP, SV2 and Glut1, this feature appears to have arisen separately.
- Published
- 2009
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24. Synaptic vesicle protein 2 binds adenine nucleotides.
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Yao J and Bajjalieh SM
- Subjects
- Adenosine Triphosphate chemistry, Animals, Binding Sites, Biotin chemistry, Cytoplasm metabolism, Dose-Response Relationship, Drug, Humans, Membrane Glycoproteins chemistry, Microsomes metabolism, Nerve Tissue Proteins chemistry, Protein Binding, Protein Structure, Tertiary, Rats, Recombinant Proteins chemistry, Adenine chemistry, Membrane Glycoproteins physiology, Nerve Tissue Proteins physiology, Nucleotides chemistry
- Abstract
Synaptic vesicle protein 2 (SV2) is required for normal calcium-regulated secretion of hormones and neurotransmitters. Neurons lacking the two most widely expressed isoforms, SV2A and SV2B, have a reduced readily releasable pool of synaptic vesicles, indicating that SV2 contributes to vesicle priming. The presence of putative ATP-binding sites in SV2 suggested that SV2 might be an ATP-binding protein. To explore this, we examined the binding of the photoaffinity reagent 8-azido-ATP[gamma] biotin to purified, recombinant SV2 in the presence and absence of other nucleotides. Our results indicate that SV2A and SV2B bind nucleotides, with the highest affinity for adenine-containing nucleotides. SV2A contains two binding sites located in the cytoplasmic domains preceding the first and seventh transmembrane domains. These results suggest that SV2-mediated vesicle priming could be regulated by adenine nucleotides, which might provide a link between cellular energy levels and regulated secretion.
- Published
- 2008
- Full Text
- View/download PDF
25. The heterotrimeric [corrected] G protein subunit G alpha i is present on mitochondria.
- Author
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Lyssand JS and Bajjalieh SM
- Subjects
- Biomarkers metabolism, Cell Line, Chemical Fractionation, GTP-Binding Protein alpha Subunits, Gq-G11 metabolism, Humans, Porins metabolism, GTP-Binding Protein alpha Subunits, Gi-Go metabolism, Mitochondria metabolism
- Abstract
Receptors that signal through heterotrimeric [corrected] GTP binding (G) proteins mediate the majority of intercellular communication. Recent evidence suggests that receptors acting through G proteins also transfer signals across the nuclear membrane. Here we present cell fractionation and immunolabeling data showing that the heterotrimeric [corrected] G protein subunit Galphai is associated with mitochondria. This finding suggests that G protein receptor signaling may be a feature common to all membranes.
- Published
- 2007
- Full Text
- View/download PDF
26. Deconvolving single-molecule intensity distributions for quantitative microscopy measurements.
- Author
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Mutch SA, Fujimoto BS, Kuyper CL, Kuo JS, Bajjalieh SM, and Chiu DT
- Subjects
- Algorithms, Animals, Brain, Cells, Cultured, Computer Simulation, Image Interpretation, Computer-Assisted methods, Lysine metabolism, Models, Statistical, Rats, Statistical Distributions, Synaptic Vesicles ultrastructure, Avidin metabolism, Lysine analogs & derivatives, Models, Biological, Synaptic Vesicles metabolism
- Abstract
In fluorescence microscopy, images often contain puncta in which the fluorescent molecules are spatially clustered. This article describes a method that uses single-molecule intensity distributions to deconvolve the number of fluorophores present in fluorescent puncta as a way to "count" protein number. This method requires a determination of the correct statistical relationship between the single-molecule and single-puncta intensity distributions. Once the correct relationship has been determined, basis histograms can be generated from the single-molecule intensity distribution to fit the puncta distribution. Simulated data were used to demonstrate procedures to determine this relationship, and to test the methodology. This method has the advantages of single-molecule measurements, providing both the mean and variation in molecules per puncta. This methodology has been tested with the avidin-biocytin binding system for which the best-fit distribution of biocytins in the sample puncta was in good agreement with a bulk determination of the avidin-biocytin binding ratio.
- Published
- 2007
- Full Text
- View/download PDF
27. Synaptic vesicle protein 2 enhances release probability at quiescent synapses.
- Author
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Custer KL, Austin NS, Sullivan JM, and Bajjalieh SM
- Subjects
- Action Potentials, Animals, Astrocytes physiology, Calcium pharmacology, Cells, Cultured, Evoked Potentials physiology, Genotype, Membrane Glycoproteins deficiency, Membrane Glycoproteins genetics, Mice, Mice, Inbred C57BL, Mice, Knockout, Nerve Tissue Proteins deficiency, Nerve Tissue Proteins genetics, Patch-Clamp Techniques, Synaptic Vesicles ultrastructure, Hippocampus cytology, Membrane Glycoproteins physiology, Nerve Tissue Proteins physiology, Neurons metabolism, Neurotransmitter Agents metabolism, Synaptic Transmission physiology, Synaptic Vesicles metabolism
- Abstract
We report a thorough analysis of neurotransmission in cultured hippocampal neurons lacking synaptic vesicle protein 2 (SV2), a membrane glycoprotein present in all vesicles that undergo regulated secretion. We found that SV2 selectively enhances low-frequency neurotransmission by priming morphologically docked vesicles. Loss of SV2 reduced initial release probability during a train of action potentials but had no effect on steady-state responses. The amount and decay rate of asynchronous release, two measures sensitive to presynaptic calcium concentrations, are not altered in SV2 knock-outs, suggesting that SV2 does not act by modulating presynaptic calcium. Normal neurotransmission could be temporarily recovered by delivering an exhaustive stimulus train. Our results indicate that SV2 primes vesicles in quiescent neurons and that SV2 function can be bypassed by an activity-dependent priming mechanism. We propose that SV2 action modulates synaptic networks by ensuring that low-frequency neurotransmission is faithfully conveyed.
- Published
- 2006
- Full Text
- View/download PDF
28. SV2A and SV2C contain a unique synaptotagmin-binding site.
- Author
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Schivell AE, Mochida S, Kensel-Hammes P, Custer KL, and Bajjalieh SM
- Subjects
- Amino Acid Sequence, Animals, Binding Sites drug effects, Calcium pharmacology, Cells, Cultured, Isomerism, Membrane Glycoproteins chemistry, Molecular Sequence Data, Nerve Tissue Proteins chemistry, Neurons cytology, Rats, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Synaptic Transmission physiology, Synaptotagmins, Calcium-Binding Proteins metabolism, Membrane Glycoproteins genetics, Membrane Glycoproteins metabolism, Nerve Tissue Proteins genetics, Nerve Tissue Proteins metabolism, Neurons metabolism
- Abstract
SV2 (Synaptic Vesicle Protein 2) is expressed in neurons and endocrine cells where it is required for normal calcium-evoked neurosecretion. In mammals, there are three SV2 genes, denoted SV2A, B and C. SV2A interacts with synaptotagmin, the prime candidate for the calcium sensor in exocytosis. Here, we report that all isoforms of native SV2 bind synaptotagmin and that binding is inhibited by calcium, indicating that all isoforms contain a common calcium-inhibited synaptotagmin-binding site. The isolated amino termini of SV2A and SV2C supported an additional interaction with synaptotagmin, and binding at this site was stimulated by calcium. The amino-terminal binding site was mapped to the first 57 amino acids of SV2A, and removal of this domain decreased calcium-mediated inhibition of binding to synaptotagmin, suggesting that it modulates calcium's effect on the SV2-synaptotagmin interaction. Introduction of the amino terminus of SV2A or SV2C into cultured superior cervical ganglion neurons inhibited neurotransmission, whereas the amino terminus of SV2B did not. These observations implicate the SV2-synaptotagmin interaction in regulated exocytosis and suggest that SV2A and SV2C, via their additional synaptotagmin binding site, function differently than SV2B.
- Published
- 2005
- Full Text
- View/download PDF
29. MuLK, a eukaryotic multi-substrate lipid kinase.
- Author
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Waggoner DW, Johnson LB, Mann PC, Morris V, Guastella J, and Bajjalieh SM
- Subjects
- Amino Acid Sequence, Animals, Brain metabolism, Cardiolipins chemistry, Cations, Cell Membrane metabolism, DNA, Complementary metabolism, Diacylglycerol Kinase chemistry, Diglycerides chemistry, Dose-Response Relationship, Drug, Gene Library, Genome, Human, Green Fluorescent Proteins, Humans, Ions, Kinetics, Luminescent Proteins metabolism, Mice, Molecular Sequence Data, Pancreas metabolism, Phosphorylation, Phylogeny, Protein Structure, Tertiary, RNA, Messenger metabolism, Recombinant Proteins chemistry, Sphingosine metabolism, Subcellular Fractions metabolism, Tissue Distribution, Lipids chemistry, Phosphotransferases (Alcohol Group Acceptor) chemistry, Phosphotransferases (Alcohol Group Acceptor) genetics
- Abstract
We report the identification and characterization of a novel lipid kinase that phosphorylates multiple substrates. This enzyme, which we term MuLK for multi-substrate lipid kinase, does not belong to a previously described lipid kinase family. MuLK has orthologs in many organisms and is broadly expressed in human tissues. Although predicted to be a soluble protein, MuLK co-fractionates with membranes and localizes to an internal membrane compartment. Recombinant MuLK phosphorylates diacylglycerol, ceramide, and 1-acylglycerol but not sphingosine. Although its affinity for diacylglycerol and ceramide are similar, MuLK exhibits a higher V(max) toward diacylglycerol in vitro, consistent with it acting primarily as a diacylglycerol kinase. MuLK activity was inhibited by sphingosine and enhanced by cardiolipin. It was stimulated by calcium when magnesium concentrations were low and inhibited by calcium when magnesium concentrations were high. The effects of charged lipids and cations on MuLK activity in vitro suggest that its activity in vivo is tightly regulated by cellular conditions.
- Published
- 2004
- Full Text
- View/download PDF
30. The synaptic vesicle protein SV2A is the binding site for the antiepileptic drug levetiracetam.
- Author
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Lynch BA, Lambeng N, Nocka K, Kensel-Hammes P, Bajjalieh SM, Matagne A, and Fuks B
- Subjects
- Animals, Binding Sites, Brain cytology, Brain metabolism, Fibroblasts, Gene Deletion, Humans, Inhibitory Concentration 50, Intracellular Membranes metabolism, Levetiracetam, Membrane Glycoproteins chemistry, Membrane Glycoproteins genetics, Mice, Mice, Knockout, Molecular Weight, Nerve Tissue Proteins chemistry, Nerve Tissue Proteins genetics, Photoaffinity Labels, Piracetam analogs & derivatives, Precipitin Tests, Protein Binding, Rats, Seizures, Synaptic Vesicles metabolism, Anticonvulsants metabolism, Membrane Glycoproteins metabolism, Nerve Tissue Proteins metabolism, Piracetam metabolism
- Abstract
Here, we show that the synaptic vesicle protein SV2A is the brain binding site of levetiracetam (LEV), a new antiepileptic drug with a unique activity profile in animal models of seizure and epilepsy. The LEV-binding site is enriched in synaptic vesicles, and photoaffinity labeling of purified synaptic vesicles confirms that it has an apparent molecular mass of approximately 90 kDa. Brain membranes and purified synaptic vesicles from mice lacking SV2A do not bind a tritiated LEV derivative, indicating that SV2A is necessary for LEV binding. LEV and related compounds bind to SV2A expressed in fibroblasts, indicating that SV2A is sufficient for LEV binding. No binding was observed to the related isoforms SV2B and SV2C. Furthermore, there is a high degree of correlation between binding affinities of a series of LEV derivatives to SV2A in fibroblasts and to the LEV-binding site in brain. Finally, there is a strong correlation between the affinity of a compound for SV2A and its ability to protect against seizures in an audiogenic mouse animal model of epilepsy. These experimental results suggest that SV2A is the binding site of LEV in the brain and that LEV acts by modulating the function of SV2A, supporting previous indications that LEV possesses a mechanism of action distinct from that of other antiepileptic drugs. Further, these results indicate that proteins involved in vesicle exocytosis, and SV2 in particular, are promising targets for the development of new CNS drug therapies.
- Published
- 2004
- Full Text
- View/download PDF
31. SV2 modulates the size of the readily releasable pool of secretory vesicles.
- Author
-
Xu T and Bajjalieh SM
- Subjects
- Adrenal Medulla metabolism, Adrenal Medulla ultrastructure, Animals, Cell Count, Chromaffin Cells metabolism, Chromaffin Cells ultrastructure, Membrane Glycoproteins genetics, Membrane Proteins genetics, Membrane Proteins metabolism, Mice, Mice, Knockout, Microscopy, Electron, Nerve Tissue Proteins genetics, Nervous System ultrastructure, Presynaptic Terminals ultrastructure, Protein Isoforms genetics, Protein Transport genetics, SNARE Proteins, Secretory Vesicles ultrastructure, Synaptic Membranes metabolism, Synaptic Membranes ultrastructure, Calcium Signaling genetics, Exocytosis genetics, Membrane Glycoproteins deficiency, Nerve Tissue Proteins deficiency, Nervous System metabolism, Neurotransmitter Agents metabolism, Presynaptic Terminals metabolism, Secretory Vesicles metabolism, Vesicular Transport Proteins
- Abstract
The exocytosis of neurotransmitters is regulated by calcium and is plastic - features that suggest specialized regulation of the basic membrane trafficking process. Here we show that Synaptic Vesicle Protein 2 (SV2), a protein specific to neurons and endocrine cells, is required to maintain a pool of vesicles available for calcium-stimulated exocytosis. Direct measures of exocytosis in adrenal chromaffin cells showed that the calcium-induced exocytotic burst, which operationally defines the readily releasable pool of vesicles, was significantly reduced in mice lacking SV2A. Burst kinetics were normal in cells from SV2A knockout animals, however, indicating that SV2 functions before the final events of fusion. Analyses of SDS-resistant SNARE (soluble NSF (N-ethylmaleimide-sensitive fusion) attachment protein receptor) complexes in brain tissue showed that loss of SV2A was associated with fewer SDS-resistant complexes. Our observations indicate that SV2 may modulate the formation of protein complexes required for fusion and therefore the progression of vesicles to a fusion-competent state.
- Published
- 2001
- Full Text
- View/download PDF
32. Phosphorylation of synaptic vesicle protein 2 modulates binding to synaptotagmin.
- Author
-
Pyle RA, Schivell AE, Hidaka H, and Bajjalieh SM
- Subjects
- Animals, Casein Kinases, Membrane Glycoproteins chemistry, Nerve Tissue Proteins chemistry, Peptide Mapping, Phosphorylation, Protein Binding, Protein Kinases metabolism, Rats, Synaptotagmins, Calcium-Binding Proteins, Membrane Glycoproteins metabolism, Nerve Tissue Proteins metabolism
- Abstract
Synaptic vesicle protein 2 (SV2) is a component of all synaptic vesicles that is required for normal neurotransmission. Here we report that in intact synaptic terminals SV2 is a phosphoprotein. Phosphopeptide mapping studies indicate that a major site of phosphorylation is located on the cytoplasmic amino terminus. SV2 is phosphorylated on serine and threonine but not on tyrosine residues, indicating that it is a substrate for serine/threonine kinases. Phosphopeptide mapping, in gel kinase assays, and surveys of kinase inhibitors suggest that casein kinase I is a primary SV2 kinase. The amino terminus of SV2 was previously shown to mediate its interaction with synaptotagmin, a calcium-binding protein also required for normal neurotransmission. Comparison of synaptotagmin binding with phosphorylated and unphosphorylated SV2 amino-terminal peptides reveals an increase in binding with phosphorylation. These results suggest that the affinity of SV2 for synaptotagmin is modulated by phosphorylation of SV2.
- Published
- 2000
- Full Text
- View/download PDF
33. Abnormal neurotransmission in mice lacking synaptic vesicle protein 2A (SV2A).
- Author
-
Crowder KM, Gunther JM, Jones TA, Hale BD, Zhang HZ, Peterson MR, Scheller RH, Chavkin C, and Bajjalieh SM
- Subjects
- Animals, Brain anatomy & histology, Endocrine System abnormalities, Genes, Lethal, Homozygote, Membrane Glycoproteins genetics, Mice, Mice, Knockout growth & development, Mutagenesis, Nerve Tissue Proteins genetics, Nervous System Malformations, Protein Isoforms, Seizures genetics, Synapses ultrastructure, gamma-Aminobutyric Acid metabolism, Hippocampus physiology, Membrane Glycoproteins deficiency, Nerve Tissue Proteins deficiency, Synaptic Transmission physiology
- Abstract
Synaptic vesicle protein 2 (SV2) is a membrane glycoprotein common to all synaptic and endocrine vesicles. Unlike many proteins involved in synaptic exocytosis, SV2 has no homolog in yeast, indicating that it performs a function unique to secretion in higher eukaryotes. Although the structure and protein interactions of SV2 suggest multiple possible functions, its role in synaptic events remains unknown. To explore the function of SV2 in an in vivo context, we generated mice that do not express the primary SV2 isoform, SV2A, by using targeted gene disruption. Animals homozygous for the SV2A gene disruption appear normal at birth. However, they fail to grow, experience severe seizures, and die within 3 weeks, suggesting multiple neural and endocrine deficits. Electrophysiological studies of spontaneous inhibitory neurotransmission in the CA3 region of the hippocampus revealed that loss of SV2A leads to a reduction in action potential-dependent gamma-aminobutyric acid (GABA)ergic neurotransmission. In contrast, action potential-independent neurotransmission was normal. Analyses of synapse ultrastructure suggest that altered neurotransmission is not caused by changes in synapse density or morphology. These findings demonstrate that SV2A is an essential protein and implicate it in the control of exocytosis.
- Published
- 1999
- Full Text
- View/download PDF
34. Synaptic vesicle docking and fusion.
- Author
-
Bajjalieh SM
- Subjects
- Animals, Neurons chemistry, Synaptic Vesicles chemistry, Neurons physiology, Synaptic Transmission physiology, Synaptic Vesicles physiology
- Abstract
Neurotransmitter secretion shares many features with constitutive membrane trafficking. In both cases, vesicles are targeted to a specific acceptor membrane and fuse via a series of protein-protein interactions. Recent work has added to the list of protein complexes involved and is beginning to define the order in which they act. The rapid fusion, precise regulation and plasticity characteristic of synaptic exocytosis probably results from the addition of specialized regulators.
- Published
- 1999
- Full Text
- View/download PDF
35. Isoform-specific, calcium-regulated interaction of the synaptic vesicle proteins SV2 and synaptotagmin.
- Author
-
Schivell AE, Batchelor RH, and Bajjalieh SM
- Subjects
- Animals, Binding Sites, Calcium pharmacology, Cell Fractionation, Cross-Linking Reagents, Kinetics, Membrane Glycoproteins biosynthesis, Membrane Glycoproteins isolation & purification, Nerve Tissue Proteins biosynthesis, Nerve Tissue Proteins isolation & purification, Rats, Recombinant Fusion Proteins biosynthesis, Recombinant Fusion Proteins isolation & purification, Recombinant Fusion Proteins metabolism, Succinimides, Synaptotagmins, Brain metabolism, Calcium-Binding Proteins, Membrane Glycoproteins metabolism, Nerve Tissue Proteins metabolism, Neurotransmitter Agents metabolism, Synaptic Vesicles metabolism, Synaptosomes metabolism
- Abstract
The identification and functional characterization of proteins localized to synaptic vesicles has contributed significantly to our understanding of neurotransmission. Studies of synaptic vesicle protein interactions have both led to the identification of novel synaptic proteins and suggested hypotheses of protein function. Synaptic vesicle protein 2 (SV2), is an integral membrane glycoprotein present in all synaptic vesicles. There are two characterized isoforms, SV2A and SV2B. Despite their homology to transporter proteins, the function of the SV2s remains unknown. In an effort to determine SV2 function and identify cofactors required for SV2 activity, we examined the protein interactions of SV2 using a combination of cross-linking, immunoprecipitation, and recombinant protein affinity chromatography. We report that SV2 is part of a large protein complex that contains the synaptic vesicle protein synaptotagmin. The interaction between SV2 and synaptotagmin is direct, specific to SV2A, and inhibited by calcium with an EC50 of approximately 10 microM. Interaction is mediated by the cytoplasmic amino terminus of SV2A and the C2B domain of synaptotagmin. Our observations suggest a regulatory relationship between these two proteins.
- Published
- 1996
- Full Text
- View/download PDF
36. The biochemistry of neurotransmitter secretion.
- Author
-
Bajjalieh SM and Scheller RH
- Subjects
- Calcium physiology, Cell Membrane physiology, Membrane Proteins physiology, Qa-SNARE Proteins, R-SNARE Proteins, Synaptosomal-Associated Protein 25, Exocytosis, Nerve Tissue Proteins physiology, Neurons physiology, Neurotransmitter Agents metabolism, Synaptosomes physiology
- Abstract
The progress that has resulted from the convergence of biochemistry with yeast genetics has accelerated the pace at which the molecular events of membrane transport are being elucidated. Future research will focus not only on testing the proposed sequence of protein-protein interactions but also on identifying how calcium regulation is imposed on this system. As our understanding of the basic mechanisms of neurosecretion increases, attention will undoubtedly shift to how the molecules of release are modified to produce changes in synaptic efficacy.
- Published
- 1995
- Full Text
- View/download PDF
37. Ceramide 1-phosphate phosphatase activity in brain.
- Author
-
Shinghal R, Scheller RH, and Bajjalieh SM
- Subjects
- Amidohydrolases analysis, Amidohydrolases metabolism, Animals, Calcium pharmacology, Cell Fractionation, Ceramidases, Ceramides chemical synthesis, Ceramides metabolism, Kinetics, Male, Models, Biological, Phosphoric Monoester Hydrolases isolation & purification, Rats, Sphingolipids metabolism, Substrate Specificity, Brain enzymology, Phosphoric Monoester Hydrolases metabolism, Synaptosomes enzymology
- Abstract
Recent studies have implicated sphingolipids in a variety of intracellular signaling systems. The finding that a calcium-stimulated ceramide kinase copurifies with neurotransmitter-containing vesicles suggests that ceramide, or one of its metabolites, has a role in neurotransmitter release. As a step toward understanding the role of ceramide kinase in vesicle functioning, this study sought to determine the metabolic fate of the product, ceramide 1-phosphate. We report that ceramide 1-phosphate is not deacylated by brain ceramidases to produce sphingosine 1-phosphate. It is, however, the substrate for a phosphatase activity that we name ceramide 1-phosphate phosphatase (CPPase). Subcellular fractionation studies suggest that CPPase is found in the synaptic terminal and is associated with both synaptic vesicle and plasma membranes. Divalent cations, most notably calcium, inhibit CPPase activity although not at concentrations that activate ceramide kinase. The existence of both ceramide kinase and CPPase activities at the synapse suggests that ceramide 1-phosphate production regulates some aspect of synaptic vesicle functioning.
- Published
- 1993
- Full Text
- View/download PDF
38. Brain contains two forms of synaptic vesicle protein 2.
- Author
-
Bajjalieh SM, Peterson K, Linial M, and Scheller RH
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Blotting, Northern, Blotting, Southern, Blotting, Western, Cell Line, Cerebral Cortex physiology, Cloning, Molecular, DNA genetics, DNA isolation & purification, Hippocampus physiology, Membrane Glycoproteins chemistry, Molecular Sequence Data, Multigene Family, Nerve Tissue Proteins chemistry, Organ Specificity, Protein Structure, Secondary, RNA genetics, RNA isolation & purification, Rats, Recombinant Proteins chemistry, Sequence Homology, Amino Acid, Transfection, Brain physiology, Membrane Glycoproteins genetics, Nerve Tissue Proteins genetics
- Abstract
Molecular cloning of a cDNA encoding synaptic vesicle protein 2 (SV2) revealed that it is homologous to a family of proton cotransporters from bacteria and fungi and to a related family of glucose transporters found in mammals. The similarity to proton cotransporters raised the possibility that SV2 might mediate the uptake of neurotransmitters into vesicles, an activity known to require a proton gradient. To determine whether SV2 is a member of a family of vesicular proteins, we used the SV2 clone to screen for similar cDNAs in rat brain. We characterized 42 clones, 25 of which encode SV2 and 4 of which encode a protein, SV2B, that is 65% identical and 78% similar to SV2. The protein encoded by SV2B cDNA is recognized by the monoclonal antibody that defines the SV2 protein. When SV2B is expressed in COS cells, antibody labeling is reticular in nature, suggesting that SV2B, like SV2 (hence, SV2A), is segregated to intracellular membranes. The expression of SV2B is limited to neural tissue. While both forms of SV2 are expressed in all brain regions, SV2B is expressed at highest levels in the cortex and hippocampus, whereas the highest level of expression of SV2A is in subcortical regions. Therefore, the SV2 proteins, like other characterized synaptic vesicle proteins, comprise a small gene family.
- Published
- 1993
- Full Text
- View/download PDF
39. SV2, a brain synaptic vesicle protein homologous to bacterial transporters.
- Author
-
Bajjalieh SM, Peterson K, Shinghal R, and Scheller RH
- Subjects
- Amino Acid Sequence, Animals, Bacterial Proteins genetics, Carrier Proteins genetics, DNA isolation & purification, Electrophoresis, Polyacrylamide Gel, Fungal Proteins genetics, Molecular Sequence Data, Polymerase Chain Reaction, Rats, Sequence Homology, Nucleic Acid, Transfection, Brain metabolism, Membrane Glycoproteins genetics, Nerve Tissue Proteins genetics
- Abstract
Synaptic vesicle protein 2 (SV2) is a membrane glycoprotein specifically localized to secretory vesicles in neurons and endocrine cells. As a first step toward understanding the function of SV2 in neural secretion, a rat brain complementary DNA (cDNA) that encodes SV2 was isolated and characterized. Analyses of this cDNA predict that SV2 contains 12 transmembrane domains. The NH2-terminal half of the protein shows significant amino acid sequence identity to a family of bacterial proteins that transport sugars, citrate, and drugs. Expression of the SV2 cDNA in COS cells yielded a high level of SV2-like immunoreactivity distributed in a reticular and punctate pattern, which suggests localization to intracellular membranes. Its localization to vesicles, predicted membrane topology, and sequence identity to known transporters suggest that SV2 is a synaptic vesicle-specific transporter.
- Published
- 1992
- Full Text
- View/download PDF
40. Thyrotropin-releasing hormone activates a Ca2+-dependent polyphosphoinositide phosphodiesterase in permeable GH3 cells. GTP gamma S potentiation by a cholera and pertussis toxin-insensitive mechanism.
- Author
-
Martin TF, Lucas DO, Bajjalieh SM, and Kowalchyk JA
- Subjects
- Adenine Nucleotides metabolism, Adenosine Triphosphate metabolism, Animals, Cell Line, Cell Membrane Permeability, Cholera Toxin pharmacology, Dose-Response Relationship, Drug, Electric Stimulation, Enzyme Activation, Guanosine 5'-O-(3-Thiotriphosphate), Guanosine Triphosphate pharmacology, Hydrolysis, Inositol Phosphates metabolism, Lithium pharmacology, Pertussis Toxin, Phosphoinositide Phospholipase C, Protein Kinases metabolism, Rats, Virulence Factors, Bordetella pharmacology, Calcium metabolism, Guanosine Triphosphate analogs & derivatives, Phosphoric Diester Hydrolases metabolism, Pituitary Neoplasms enzymology, Thionucleotides pharmacology, Thyrotropin-Releasing Hormone pharmacology
- Abstract
Numerous hormones are known to rapidly activate polyphosphoinositide turnover in target cells by promoting phosphodiesteratic cleavage of the phospholipids; however, little is known about the enzymology of receptor-mediated phosphoinositide breakdown. In the present study, thyrotropin-releasing hormone (TRH) stimulation of polyphosphoinositide turnover has been characterized in electrically permeabilized, [3H]myoinositol-labeled GH3 cells. The permeable cells allow the influence of small molecular weight (Mr less than or equal to 1000) cofactors to be determined. We present evidence for the following: 1) TRH stimulates inositol phosphate generation in permeable cells; 2) optimal hormone-stimulated inositol phosphate generation requires Mg2+, ATP, and Ca2+; 3) Mg2+ and ATP requirements reflect polyphosphoinositide kinase reactions; 4) in the absence of MgATP, TRH stimulates the phosphodiesteratic breakdown of pre-existing polyphosphoinositides in a reaction which requires only low Ca2+ (10(-7) M); 5) hormone activation is potentiated in the presence of the stable guanine nucleotide, GTP gamma S; neither TRH-stimulated nor GTP gamma S-potentiated hydrolysis is inhibited by cholera or pertussis toxin treatment. These results demonstrate that hormone-induced phospholipid hydrolysis involves activation of a phosphoinositide phosphodiesterase; activation results in lowering the Ca2+ requirement of the phosphodiesterase such that maximal activity is observed at Ca2+ levels characteristic of a resting cell (10(-7) M). Furthermore, TRH regulation of polyphosphoinositide hydrolysis is modulated by guanine nucleotides; however, nucleotide regulation appears to involve a GTP-binding factor (Np) other than Ns or Ni.
- Published
- 1986
41. Synaptic vesicle ceramide kinase. A calcium-stimulated lipid kinase that co-purifies with brain synaptic vesicles.
- Author
-
Bajjalieh SM, Martin TF, and Floor E
- Subjects
- Animals, Biomarkers, Cytoplasm enzymology, Cytoplasm physiology, Diacylglycerol Kinase, Enzyme Activation, Kinetics, Phosphorylation, Phosphotransferases isolation & purification, Rats, Substrate Specificity, Brain enzymology, Calcium physiology, Phosphotransferases metabolism, Synaptic Vesicles enzymology
- Abstract
Much current work on the mechanism of neurosecretion has focused on proteins specific to neural secretory vesicles (synaptic vesicles). We report a calcium-stimulated lipid kinase that co-purifies with rat brain synaptic vesicles. This enzyme activity is found only in membrane fractions that contain synaptic vesicle markers. Based on identification of the lipid product as ceramide 1-phosphate and on the finding that ceramide kinase activity co-purifies with synaptic vesicles, the enzyme is proposed to be a ceramide kinase. Kinase activity is stimulated by micromolar concentrations of calcium. Calcium increases the apparent Vmax of the reaction with little effect on the Km for ceramide. The vesicular localization of this enzyme, the requirement for ATP, and the stimulation of enzyme activity by micromolar calcium suggest that ceramide phosphorylation may be associated with neurotransmitter release.
- Published
- 1989
42. Thyrotropin-releasing hormone stimulation of polyphosphoinositide hydrolysis in GH3 cell membranes is GTP dependent but insensitive to cholera or pertussis toxin.
- Author
-
Martin TF, Bajjalieh SM, Lucas DO, and Kowalchyk JA
- Subjects
- Animals, Cell Line, Cell Membrane metabolism, Cholera Toxin pharmacology, Diglycerides metabolism, Guanosine 5'-O-(3-Thiotriphosphate), Guanosine Triphosphate analogs & derivatives, Hydrolysis, Inositol 1,4,5-Trisphosphate, Inositol Phosphates metabolism, Phosphatidylinositol Phosphates, Pituitary Gland drug effects, Pituitary Neoplasms, Rats, Thionucleotides pharmacology, Guanosine Triphosphate pharmacology, Phosphatidylinositols metabolism, Pituitary Gland metabolism, Thyrotropin-Releasing Hormone pharmacology
- Abstract
Thyrotropin-releasing hormone (TRH), like numerous other Ca2+-mobilizing agonists, has been found to stimulate polyphosphoinositide hydrolysis in responsive cells. The present studies further clarify the mechanism of action of this peptide hormone by demonstrating direct in vitro effects of TRH on polyphosphoinositide hydrolysis in GH3 pituitary cell membranes. Membranes from [3H]myoinositol-labeled cells were found to generate inositol bis- and tris- but not monophosphate upon incubation. Inositol polyphosphate generation was stimulated 2-3-fold by nanomolar concentrations of TRH in a reaction which was potentiated by micromolar concentrations of GTP; hormone-stimulated hydrolysis observed in the absence of GTP was fully antagonized by guanosine 5'-O-(2-thiodiphosphate). Guanosine 5'-O-(3-thiotriphosphate), Ca2+, and sodium fluoride also activated phosphoinositide hydrolysis in vitro. Stimulated inositol polyphosphate generation was accompanied by stimulated 1,2-diacylglycerol formation. Evidence that both phosphatidylinositol 4,5-bisphosphate as well as phosphatidylinositol 4-phosphate served as substrates for the activated phosphoinositide phosphodiesterase is presented. Pretreatment of GH3 cells with cholera or pertussis toxin did not influence stimulated hydrolysis in membranes. It is concluded that the TRH receptor directly regulates polyphosphoinositide hydrolysis in GH3 cell plasma membranes by a GTP-dependent process. The GTP dependence does not appear to be mediated through a cholera or pertussis toxin substrate and may involve a novel GTP-binding protein (NP).
- Published
- 1986
43. Direct stimulation by thyrotropin-releasing hormone (TRH) of polyphosphoinositide hydrolysis in GH3 cell membranes by a guanine nucleotide-modulated mechanism.
- Author
-
Lucas DO, Bajjalieh SM, Kowalchyk JA, and Martin TF
- Subjects
- Animals, Cell Line, Cell Membrane metabolism, Hydrolysis, Phosphatidylinositol Phosphates, Pituitary Gland drug effects, Rats, Stimulation, Chemical, Guanosine Triphosphate pharmacology, Phosphatidylinositols metabolism, Pituitary Gland metabolism, Thyrotropin-Releasing Hormone pharmacology
- Abstract
Polyphosphoinositide hydrolysis was examined in membranes from thyrotropin-releasing hormone (TRH)-responsive GH3 pituitary cells. [3H]Inositol phosphates (IP2 and IP3) were generated upon incubation of membranes from [3H]inositol-labeled cells indicating the presence of a membrane-associated polyphosphoinositide phosphodiesterase (PPI PDE). Membrane PPI PDE activity was found to be stimulated by TRH and by GTP-gamma-S in Ca2+-modulated manner. In addition, TRH-stimulated PPI hydrolysis was potentiated by GTP. These results demonstrate direct in vitro effects of a hormone on PPI turnover and suggest the involvement of a GTP-binding component in transmembrane signalling by TRH.
- Published
- 1985
- Full Text
- View/download PDF
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