49 results on '"Bajorek M"'
Search Results
2. Heat transfer analysis software adapted to skin burn depth simulations
- Author
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Bajorek, M. K., Kacmarek, M., Magjarevic, R., editor, Nagel, J. H., editor, Vander Sloten, Jos, editor, Verdonck, Pascal, editor, Nyssen, Marc, editor, and Haueisen, Jens, editor
- Published
- 2009
- Full Text
- View/download PDF
3. Ubiquitin-proteasome system: Keepers at the final gates: regulatory complexes and gating of the proteasomechannel
- Author
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Bajorek, M. and Glickman, M. H.
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- 2004
- Full Text
- View/download PDF
4. Variation within the CLEC16A gene shows consistent disease association with both multiple sclerosis and type 1 diabetes in Sardinia
- Author
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Zoledziewska, M, Costa, G, Pitzalis, M, Cocco, E, Melis, C, Moi, L, Zavattari, P, Murru, R, Lampis, R, Morelli, L, Poddie, F, Frongia, P, Pusceddu, P, Bajorek, M, Marras, A, Satta, A M, Chessa, A, Pugliatti, M, Sotgiu, S, Whalen, M B, Rosati, G, Cucca, F, and Marrosu, M G
- Published
- 2009
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5. Impact of nucleic acid testing for hepatitis B virus, hepatitis C virus, and human immunodeficiency virus on the safety of blood supply in Italy: a 6-year survey
- Author
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Claudio, Velati, Luisa, Romano, Laura, Fomiatti, Lorella, Baruffi, Alessandro Remo Zanetti, Research Group: Sciariada, Simti L., Lobbiani, L., Prati, D., Marconi, M., Ravagnani, E., Rossi, E., Rossini, S., Bellavita, P., Moroni, G. A., Bodini, U., Pagliaro, P., Azzario, F., Rossi, D., Sciorelli, G., Salvaneschi, L., Cambie, G., Marini, M., Pizzoccolo, G., Gazzola, G. B., Peres, E., Mariottini, C., Graziani, G., Baicchi, U., Palla, P., Vacri, L., Strada, P., Miceli, M., Iudicone, P., Girelli, Gabriella, Ursitti, A., De Silvestro, G., Gentile, R., Di Paola, P., Manca, M., Martinelli, L., Bonomo, P., Calabrese, S., Pistolese, G., Aprili, G., Bressan, F., Ripamonti, M., Catalano, A., Gallerano, P., Giacalone, I., Fiorilla, A., Giannotti, G., Cantella, R., Di Persia, M. G., Esposito, V., Sardella, C., Di Monte, D., Bajorek, M., Reina, A., Silvani, C. M., Piani, M., Salvoni, G., De Felice, L., Macri, M., De Palma, M., Vecchi, C., Belloni, M., Bettini, C., Ghiazza, P., De Santis, D., Di Mauro, L., Antoncecchi, S., Rinaldi, C., Allegreita, G., Siracusano, L., Adami, R., Lanteri, M., Mazzei, C., Tagariello, G., Gajo, G. B., Berti, P., Giordano, C., Palazzesi, G., Del Gusto, B., Pavone, A., Vacchini, M., Tomasini, A., Vaselli, G., Fiorin, F., Bresolin, G., Bertola, F., Testa, D., Semino, G., Tomasini, I., Zucchelli, P., Chicchi, R., Peano, G., Franchi, D., Sabelli, M., Miloro, G., Di Gregorio, P., Reimondo, P., Cimino, G., Tripodi, G., Borzini, P., Tarditi, M., Cocchi, T., Pata, V., Santarelli, R., Geremicca, W., Minerva, A., Maccarione, F. P., Solanda, F., Rivasi, P., Carubia, F., Prinoth, O., Ostuni, A., Bossio, M., Maggiotto, A., Valentino, F., Puzzonia, P., and Source Musto, C.
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Adult ,Male ,Hepatitis B virus ,Genotype ,Hepacivirus ,Hepatitis C virus ,Immunology ,Blood Donors ,HIV Infections ,medicine.disease_cause ,Virus ,Flaviviridae ,Orthohepadnavirus ,Risk Factors ,Seroepidemiologic Studies ,medicine ,Humans ,Mass Screening ,Immunology and Allergy ,Aged ,biology ,business.industry ,HIV ,virus diseases ,Hematology ,Middle Aged ,Hepatitis B ,biology.organism_classification ,medicine.disease ,Hepatitis C ,Virology ,digestive system diseases ,Italy ,Hepadnaviridae ,Virus Diseases ,Health Care Surveys ,Blood Banks ,Female ,Morbidity ,Safety ,business ,Risk Reduction Behavior - Abstract
BACKGROUND: Nucleic acid testing (NAT) for hepatitis C virus (HCV) and human immunodeficiency virus (HIV) has been implemented in several European countries and in the United States, while hepatitis B virus (HBV) NAT is still being questioned by opinions both in favor and against such an option, depending on the HBV endemicity, health care resources, and expected benefits. STUDY DESIGN AND METHODS: This survey was aimed to assess the NAT impact in improving the safety of blood supply in Italy, 6 years after implementation. The study involved 93 Italian transfusion centers and was carried out in 2001 through 2006. A total of 10,776,288 units were tested for the presence of HCV RNA, 7,932,430 for HIV RNA, and 3,405,497 for HBV DNA, respectively. RESULTS: Twenty-seven donations or 2.5 per million tested were HCV RNA–positive/anti-HCV–negative; 14 or 1.8 per million units tested were HIV RNA–positive/anti-HIV–negative; and 197 or 57.8 per million donations tested were HBV DNA–positive/hepatitis B surface antigen–negative. Of the latter, 8 (2.3/106) were collected from donors in the window phase of infection and 189 (55.5/106) from donors with occult HBV. Sixty-eight percent of the latter donors had hepatitis B surface antibody, 74.5 percent of whom with concentrations considered protective (≥10 mIU/mL). CONCLUSION: NAT implementation has improved blood safety by reducing the risk of entering 2.5 HCV and 1.8 HIV infectious units per million donations into the blood supply. The yield of NAT in detecting infectious blood before transfusion was higher for HBV than for HCV or HIV. However, the benefit of HBV NAT in terms of avoided HBV-related morbidity and mortality in blood recipients needs to be further evaluated.
- Published
- 2008
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6. Alveolar macrophages can control respiratory syncytial virus infection in the absence of type I interferons
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Makris, S, Bajorek, M, Culley, F, Goritzka, M, Johansson, C, National Heart and Lung Institute - Respiratory Infections Section, Imperial College London, Department of Medicine, Career Development Award from the Medical Research Council G0800311, MRC G1001763, National Heart and Lung Institute Foundation 1048073, Rosetrees Trust M370, Wellcome Trust 104931/Z/14/Z, BBSRC BB/L015129/1, European Project: 321931, Medical Research Council (MRC), Commission of the European Communities, Rosetrees Trust, and National Heart and Lung Institute Foundation
- Subjects
Mice, Knockout ,Pattern recognition receptors ,Medical And Health Sciences ,viruses ,[SDV]Life Sciences [q-bio] ,virus diseases ,Receptor, Interferon alpha-beta ,Respiratory Syncytial Virus Infections ,Virus Replication ,Respiratory Syncytial Viruses ,macrophages ,Mice, Inbred C57BL ,Mice ,Interferon Type I ,Macrophages, Alveolar ,Type I interferons ,Animals ,Cytokines ,Inflammation Mediators ,Cells, Cultured ,Research Article ,Adaptor Proteins, Signal Transducing ,Signal Transduction - Abstract
Respiratory syncytial virus (RSV) is a common cause of lower respiratory tract infections. Immunity to RSV is initiated upon detection of the virus by pattern recognition receptors, such as RIG-I-like receptors. RIG-I-like receptors signal via MAVS to induce the synthesis of proinflammatory mediators, including type I interferons (IFNs), which trigger and shape antiviral responses and protect cells from infection. Alveolar macrophages (AMs) are amongst the first cells to encounter invading viruses and the ones producing type I IFNs. However, it is unclear whether IFNs act to prevent AMs from serving as vehicles for viral replication. In this study, primary AMs from MAVS (Mays(-/-))- or type I IFN receptor (Ifnar1(-/-))-deficient mice were exposed to RSV ex vivo. Wild-type (wt) AMs but not Mavs(-/-) and Ifnar1(-/-) AMs produced inflammatory mediators in response to RSV. Furthermore, Mays and Ifnar1(-/-) AMs accumulated more RSV proteins than wt AMs, but the infection was abortive. Thus, RIG-I-like receptor-MAVS and IFNAR signalling are important for the induction of proinflammatory mediators from AMs upon RSV infection, but this signalling is not central for controlling viral replication. The ability to restrict viral replication makes AMs ideal sensors of RSV infection and important initiators of immune responses in the lung.
- Published
- 2016
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7. The nucleolar protein fibrillarin modulates its expression and distribution during Respiratory Sincital Virus infection.
- Author
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Ulloa-Aguilar, J. M., Holguin-Cruz, V. J., Vázquez-Martínez, J. A., Herrera-Moro, Huitron L., Cedillo-Barrón, L., García-Cordero, J., Bajorek, M., Viveros-Rogel, M., Vergara-Mendoza, M., Miranda-Labra, R. U., and León-Juárez, M.
- Subjects
FIBRILLARIN ,RESPIRATORY syncytial virus infections ,NUCLEAR proteins - Abstract
In this work, we focus on the respiratory syncytial virus matrix protein. However,the primary function of the matrix protein is to serve as a site for viral assembly and budding at the plasma membrane. There is evidence that the matrix protein of Nipah and Hendra viruses can be transported to the nucleolus and interact with nucleolar proteins, such as fibrillarin (FBL). The interaction between FBL and matrix causes FBL to be inhibited, silencing the rRNA biogenesis. And the latter allows for an increase in the production of viral particles. In this work, we focus on evaluating the nucleolar distribution and expression of FBL protein during the infection of RSV. Our results obtained in immunofluorescence did not identify a colocalization between the matrix protein and the FBL protein. However, different distributions and proportions of this protein were observed; and performing an analysis of medium-intensity fluorescence determined a more significant signal of FBL in conditions of infection. This data was corroborated by a western blot identifying a greater expression of this nuclear protein in cells infected with RSV. In conclusion, RSV infection doesn’t exist to colocalize between FBL and matrix protein: however, it identified that RSV promotes an increase in the expression of the FBL protein. Therefore, the next step is to analyze the implication that this increase in FBL could have during RSV infection. during respiratory syncytial virus infection. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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8. PGM1 and TF subtypes and C3 polymorphisms in Continental Italy and Sardinia. Data on the world distribution of these genetic markers
- Author
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Scacchi, R., Palmarino, R., Lucarelli, P., Corbo, R. M., and Bajorek, M.
- Published
- 1987
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9. RSV Matrix protein
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Forster, A., primary, Maertens, G., additional, and Bajorek, M., additional
- Published
- 2015
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10. The Thr205 Phosphorylation Site within Respiratory Syncytial Virus Matrix (M) Protein Modulates M Oligomerization and Virus Production
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Bajorek, M., primary, Caly, L., additional, Tran, K. C., additional, Maertens, G. N., additional, Tripp, R. A., additional, Bacharach, E., additional, Teng, M. N., additional, Ghildyal, R., additional, and Jans, D. A., additional
- Published
- 2014
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11. CFD analysis of unsteady cavitation phenomena in multistage pump with inducer
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Sedlář, M, primary, Zima, P, additional, Bajorek, M, additional, and Krátký, T, additional
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- 2012
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12. Identification of structural defects using a simplified algorithm of thermal tomography
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Bajorek, M., primary and Nowakowski, A., additional
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- 2012
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13. The influence of carbon dioxide on dynamic thermography results
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Moderhak, M., primary and Bajorek, M., additional
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- 2010
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14. Analysis of the possibility of defect determination using cold excitation in thermal tomography
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Bajorek, M., primary and Nowakowski, A., additional
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- 2010
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15. Structure of human IST1(NTD) - (residues 1-189)(P21)
- Author
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Schubert, H.L., primary, Hill, C.P., additional, Bajorek, M., additional, and Sundquist, W.I., additional
- Published
- 2009
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16. Variation within the CLEC16A gene shows consistent disease association with both multiple sclerosis and type 1 diabetes in Sardinia
- Author
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Zoledziewska, M, primary, Costa, G, additional, Pitzalis, M, additional, Cocco, E, additional, Melis, C, additional, Moi, L, additional, Zavattari, P, additional, Murru, R, additional, Lampis, R, additional, Morelli, L, additional, Poddie, F, additional, Frongia, P, additional, Pusceddu, P, additional, Bajorek, M, additional, Marras, A, additional, Satta, A M, additional, Chessa, A, additional, Pugliatti, M, additional, Sotgiu, S, additional, Whalen, M B, additional, Rosati, G, additional, Cucca, F, additional, and Marrosu, M G, additional
- Published
- 2008
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17. Numerical heat transfer model in skin burn depth simulations
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Bajorek, M., primary and Kaczmarek, M., additional
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- 2008
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18. Ubiquitin-proteasome system
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Bajorek, M., primary and Glickman, M.H., additional
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- 2004
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19. The role of a mobile device in a home monitoring healthcare system.
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Bajorek, M. and Nowak, J.
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- 2011
20. The substrate translocation channel of the proteasome
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Kohler, A., Bajorek, M., Groll, M., Moroder, L., Rubin, D. M., Huber, R., Glickman, M. H., and Finley, D.
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- 2001
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21. Properties of 3H-MPTP binding sites in human blood platelets
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Del Zompo, M., primary, Bernardi, F., additional, Bonuccelli, U., additional, Maggio, R., additional, Bajorek, M., additional, Arnone, M., additional, and Corsini, G.U., additional
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- 1986
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22. Correction: Selective targeting and clustering of phosphatidylserine lipids by RSV M protein is critical for virus particle production.
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Swain J, Bierre M, Veyrié L, Richard CA, Eleouet JF, Muriaux D, and Bajorek M
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- 2024
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23. Selective targeting and clustering of phosphatidylserine lipids by RSV M protein is critical for virus particle production.
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Swain J, Bierre M, Veyrié L, Richard CA, Eleouet JF, Muriaux D, and Bajorek M
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- Humans, Cell Membrane metabolism, Membrane Lipids metabolism, Phosphatidylserines metabolism, Viral Fusion Proteins metabolism, Virion metabolism, Virus Assembly, Viral Matrix Proteins genetics, Viral Matrix Proteins metabolism, Cell Line, Tumor, Respiratory Syncytial Virus, Human
- Abstract
Human respiratory syncytial virus (RSV) is the leading cause of infantile bronchiolitis in the developed world and of childhood deaths in resource-poor settings. The elderly and the immunosuppressed are also affected. It is a major unmet target for vaccines and antiviral drugs. RSV assembles and buds from the host cell plasma membrane by forming infectious viral particles which are mostly filamentous. A key interaction during RSV assembly is the interaction of the matrix (M) protein with cell plasma membrane lipids forming a layer at assembly sites. Although the structure of RSV M protein dimer is known, it is unclear how the viral M proteins interact with cell membrane lipids, and with which one, to promote viral assembly. Here, we demonstrate that M proteins are able to cluster at the plasma membrane by selectively binding with phosphatidylserine (PS). Our in vitro studies suggest that M binds PS lipid as a dimer and upon M oligomerization, PS clustering is observed. In contrast, the presence of other negatively charged lipids like PI(4, 5)P2 does not enhance M binding beyond control zwitterionic lipids, while cholesterol negatively affects M interaction with membrane lipids. Moreover, we show that the initial binding of the RSV M protein with PS lipids is independent of the cytoplasmic tail of the fusion (F) glycoprotein (FCT). Here, we highlight that M binding on membranes occurs directly through PS lipids, this interaction is electrostatic in nature, and M oligomerization generates PS clusters., Competing Interests: Conflicts of interest The authors declare that they have no conflict of interest with the contents of this article., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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24. A Role for the Proteasome Alpha2 Subunit N-Tail in Substrate Processing.
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Sahu I, Bajorek M, Tan X, Srividya M, Krutauz D, Reis N, Osmulski PA, Gaczynska ME, and Glickman MH
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- Models, Molecular, Proteolysis, Proteasome Endopeptidase Complex metabolism
- Abstract
The proteolytic active sites of the 26S proteasome are sequestered within the catalytic chamber of its 20S core particle (CP). Access to this chamber is through a narrow channel defined by the seven outer α subunits. In the resting state, the N-termini of neighboring α subunits form a gate blocking access to the channel. The attachment of the activators or regulatory particles rearranges the blocking α subunit N-termini facilitating the entry of substrates. By truncating or mutating each of the participating α N-termini, we report that whereas only a few N-termini are important for maintaining the closed gate, all seven N-termini participate in the open gate. Specifically, the open state is stabilized by a hydrogen bond between an invariant tyrosine (Y) in each subunit with a conserved aspartate (D) in its counterclockwise neighbor. The lone exception is the α1-α2 pair leaving a gap in the ring circumference. The third residue (X) of this YD(X) motif aligns with the open channel. Phenylalanine at this position in the α2 subunit comes in direct contact with the translocating substrate. Consequently, deletion of the α2 N-terminal tail attenuates proteolysis despite the appearance of an open gate state. In summary, the interlacing N-terminal YD(X) motifs regulate both the gating and translocation of the substrate.
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- 2023
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25. Respiratory Syncytial Virus NS1 Protein Targets the Transactivator Binding Domain of MED25.
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Dong J, Basse V, Bierre M, Peres de Oliveira A, Vidalain PO, Sibille P, Tangy F, Galloux M, Eleouet JF, Sizun C, and Bajorek M
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- Chromatin chemistry, Humans, Protein Binding, Protein Domains, RNA Polymerase II metabolism, Mediator Complex chemistry, Respiratory Syncytial Virus, Human genetics, Trans-Activators chemistry, Viral Nonstructural Proteins chemistry, Viral Nonstructural Proteins genetics
- Abstract
Human RSV is the leading cause of infantile bronchiolitis in the world and one of the major causes of childhood deaths in resource-poor settings. It is a major unmet target for vaccines and anti-viral drugs. Respiratory syncytial virus has evolved a unique strategy to evade host immune response by coding for two non-structural proteins NS1 and NS2. Recently it was shown that in infected cells, nuclear NS1 could be involved in transcription regulation of host genes linked to innate immune response, via interactions with chromatin and the Mediator complex. Here we identified the MED25 Mediator subunit as an NS1 interactor in a yeast two-hybrid screen. We demonstrate that NS1 directly interacts with MED25 in vitro and in cellula, and that this interaction involves the MED25 transactivator binding ACID domain on the one hand, and the C-terminal α3 helix of NS1, with an additional contribution of the globular domain of NS1, on the other hand. By NMR we show that the NS1 α3 sequence primarily binds to the MED25 ACID H2 face, similarly to the α-helical transactivation domains (TADs) of transcription regulators such as Herpex simplex VP16 and ATF6α, a master regulator of ER stress response activated upon viral infection. Moreover, we found out that the NS1 could compete with ATF6α TAD for binding to MED25. These findings point to a mechanism of NS1 interfering with innate immune response by impairing recruitment by cellular TADs of the Mediator via MED25 and hence transcription of specific genes by RNA polymerase II., Competing Interests: Declaration of interests The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2022
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26. Characterization of the Interaction Domains between the Phosphoprotein and the Nucleoprotein of Human Metapneumovirus.
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Decool H, Bardiaux B, Checa Ruano L, Sperandio O, Fix J, Gutsche I, Richard CA, Bajorek M, Eléouët JF, and Galloux M
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- Animals, Binding Sites, Cell Line, Cricetinae, Inclusion Bodies metabolism, Metapneumovirus physiology, Models, Molecular, Mutation, Nucleocapsid Proteins genetics, Nucleocapsid Proteins metabolism, Phosphoproteins genetics, Phosphoproteins metabolism, Protein Binding, Protein Interaction Domains and Motifs, RNA, Viral metabolism, RNA-Dependent RNA Polymerase metabolism, Virus Replication, Metapneumovirus chemistry, Nucleocapsid Proteins chemistry, Phosphoproteins chemistry
- Abstract
Human metapneumovirus (HMPV) causes severe respiratory diseases in young children. The HMPV RNA genome is encapsidated by the viral nucleoprotein (N), forming an RNA-N complex (N
Nuc ), which serves as the template for genome replication and mRNA transcription by the RNA-dependent RNA polymerase (RdRp). The RdRp is formed by the association of the large polymerase subunit (L), which has RNA polymerase, capping, and methyltransferase activities, and the tetrameric phosphoprotein (P). P plays a central role in the RdRp complex by binding to NNuc and L, allowing the attachment of the L polymerase to the NNuc template. During infection these proteins concentrate in cytoplasmic inclusion bodies (IBs) where viral RNA synthesis occurs. By analogy to the closely related pneumovirus respiratory syncytial virus (RSV), it is likely that the formation of IBs depends on the interaction between HMPV P and NNuc , which has not been demonstrated yet. Here, we finely characterized the binding P-NNuc interaction domains by using recombinant proteins, combined with a functional assay for the polymerase complex activity, and the study of the recruitment of these proteins to IBs by immunofluorescence. We show that the last 6 C-terminal residues of HMPV P are necessary and sufficient for binding to NNuc and that P binds to the N-terminal domain of N (NNTD ), and we identified conserved N residues critical for the interaction. Our results allowed us to propose a structural model for the HMPV P-NNuc interaction. IMPORTANCE Human metapneumovirus (HMPV) is a leading cause of severe respiratory infections in children but also affects human populations of all ages worldwide. Currently, no vaccine or efficient antiviral treatments are available for this pneumovirus. A better understanding of the molecular mechanisms involved in viral replication could help the design or discovery of specific antiviral compounds. In this work, we have investigated the interaction between two major viral proteins involved in HMPV RNA synthesis, the N and P proteins. We finely characterized their domains of interaction and identified a pocket on the surface of the N protein, a potential target of choice for the design of compounds interfering with N-P complexes and inhibiting viral replication.- Published
- 2022
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27. A Structural and Dynamic Analysis of the Partially Disordered Polymerase-Binding Domain in RSV Phosphoprotein.
- Author
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Cardone C, Caseau CM, Bardiaux B, Thureaux A, Galloux M, Bajorek M, Eléouët JF, Litaudon M, Bontems F, and Sizun C
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- Hydrogen Bonding, Light, Magnetic Resonance Spectroscopy, Models, Molecular, Protein Binding, Protein Conformation, Protein Domains, Scattering, Radiation, Terpenes chemistry, X-Rays, Nucleoproteins metabolism, Phosphoproteins chemistry, Respiratory Syncytial Virus, Human chemistry, Respiratory Syncytial Virus, Human genetics, Viral Proteins chemistry
- Abstract
The phosphoprotein P of Mononegavirales ( MNV ) is an essential co-factor of the viral RNA polymerase L. Its prime function is to recruit L to the ribonucleocapsid composed of the viral genome encapsidated by the nucleoprotein N. MNV phosphoproteins often contain a high degree of disorder. In Pneumoviridae phosphoproteins, the only domain with well-defined structure is a small oligomerization domain (P
OD ). We previously characterized the differential disorder in respiratory syncytial virus (RSV) phosphoprotein by NMR. We showed that outside of RSV POD , the intrinsically disordered N-and C-terminal regions displayed a structural and dynamic diversity ranging from random coil to high helical propensity. Here we provide additional insight into the dynamic behavior of PCα , a domain that is C-terminal to POD and constitutes the RSV L-binding region together with POD . By using small phosphoprotein fragments centered on or adjacent to POD , we obtained a structural picture of the POD -PCα region in solution, at the single residue level by NMR and at lower resolution by complementary biophysical methods. We probed POD -PCα inter-domain contacts and showed that small molecules were able to modify the dynamics of PCα . These structural properties are fundamental to the peculiar binding mode of RSV phosphoprotein to L, where each of the four protomers binds to L in a different way.- Published
- 2021
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28. Tetramerization of Phosphoprotein is Essential for Respiratory Syncytial Virus Budding while its N Terminal Region Mediates Direct Interactions with the Matrix Protein.
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Bajorek M, Galloux M, Richard CA, Szekely O, Rosenzweig R, Sizun C, and Eleouet JF
- Abstract
It was shown previously that the Matrix (M), Phosphoprotein (P), and the Fusion (F) proteins of Respiratory syncytial virus (RSV) are sufficient to produce virus-like particles (VLPs) that resemble the RSV infection-induced virions. However, the exact mechanism and interactions among the three proteins are not known. This work examines the interaction between P and M during RSV assembly and budding. We show that M interacts with P in the absence of other viral proteins in cells using a Split Nano Luciferase assay. By using recombinant proteins, we demonstrate a direct interaction between M and P. By using Nuclear Magnetic Resonance (NMR) we identify three novel M interaction sites on P, namely site I in the α
N2 region, site II in the 115-125 region, and the oligomerization domain (OD). We show that the OD, and likely the tetrameric structural organization of P, is required for virus-like filament formation and VLP release. Although sites I and II are not required for VLP formation, they appear to modulate P levels in RSV VLPs. Importance Human RSV is the commonest cause of infantile bronchiolitis in the developed world and of childhood deaths in resource-poor settings. It is a major unmet target for vaccines and anti-viral drugs. The lack of knowledge of RSV budding mechanism presents a continuing challenge for VLP production for vaccine purpose. We show that direct interaction between P and M modulates RSV VLP budding. This further emphasizes P as a central regulator of RSV life cycle, as an essential actor for transcription and replication early during infection and as a mediator for assembly and budding in the later stages for virus production., (Copyright © 2021 American Society for Microbiology.)- Published
- 2021
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29. Screening for Host Factors Directly Interacting with RSV Protein: Microfluidics.
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Kipper S, Avrahami D, Bajorek M, and Gerber D
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- Gene Library, HEK293 Cells, Host-Pathogen Interactions, Humans, Printing, Three-Dimensional, Protein Array Analysis instrumentation, Protein Array Analysis methods, Protein Interaction Mapping instrumentation, Respiratory Syncytial Virus Infections virology, Respiratory Syncytial Virus, Human metabolism, Microfluidic Analytical Techniques instrumentation, Protein Interaction Mapping methods, Respiratory Syncytial Virus Infections metabolism, Respiratory Syncytial Virus, Human physiology, Viral Matrix Proteins metabolism
- Abstract
We present a high-throughput microfluidics platform to identify novel host cell binding partners of respiratory syncytial virus (RSV) matrix (M) protein. The device consists of thousands of reaction chambers controlled by micro-mechanical valves. The microfluidic device is mated to a microarray-printed custom-made gene library. These genes are then transcribed and translated on-chip, resulting in a protein array ready for binding to RSV M protein.Even small viral proteome, such as that of RSV, presents a challenge due to the fact that viral proteins are usually multifunctional and thus their interaction with the host is complex. Protein microarrays technology allows the interrogation of protein-protein interactions, which could possibly overcome obstacles by using conventional high throughput methods. Using microfluidics platform we have identified new host interactors of M involved in various cellular pathways. A number of microfluidics based assays have already provided novel insights into the virus-host interactome, and the results have important implications for future antiviral strategies aimed at targets of viral protein interactions with the host.
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- 2016
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30. Alveolar Macrophages Can Control Respiratory Syncytial Virus Infection in the Absence of Type I Interferons.
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Makris S, Bajorek M, Culley FJ, Goritzka M, and Johansson C
- Subjects
- Adaptor Proteins, Signal Transducing genetics, Animals, Cells, Cultured, Cytokines metabolism, Inflammation Mediators metabolism, Interferon Type I metabolism, Macrophages, Alveolar virology, Mice, Mice, Inbred C57BL, Mice, Knockout, Receptor, Interferon alpha-beta genetics, Signal Transduction, Virus Replication, Adaptor Proteins, Signal Transducing metabolism, Macrophages, Alveolar immunology, Receptor, Interferon alpha-beta metabolism, Respiratory Syncytial Virus Infections immunology, Respiratory Syncytial Viruses physiology
- Abstract
Respiratory syncytial virus (RSV) is a common cause of lower respiratory tract infections. Immunity to RSV is initiated upon detection of the virus by pattern recognition receptors, such as RIG-I-like receptors. RIG-I-like receptors signal via MAVS to induce the synthesis of proinflammatory mediators, including type I interferons (IFNs), which trigger and shape antiviral responses and protect cells from infection. Alveolar macrophages (AMs) are amongst the first cells to encounter invading viruses and the ones producing type I IFNs. However, it is unclear whether IFNs act to prevent AMs from serving as vehicles for viral replication. In this study, primary AMs from MAVS (Mavs-/-)- or type I IFN receptor (Ifnar1-/-)-deficient mice were exposed to RSV ex vivo. Wild-type (wt) AMs but not Mavs-/- and Ifnar1-/- AMs produced inflammatory mediators in response to RSV. Furthermore, Mavs-/- and Ifnar1-/- AMs accumulated more RSV proteins than wt AMs, but the infection was abortive. Thus, RIG-I-like receptor-MAVS and IFNAR signalling are important for the induction of proinflammatory mediators from AMs upon RSV infection, but this signalling is not central for controlling viral replication. The ability to restrict viral replication makes AMs ideal sensors of RSV infection and important initiators of immune responses in the lung., (© 2016 The Author(s) Published by S. Karger AG, Basel.)
- Published
- 2016
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31. Dimerization of matrix protein is required for budding of respiratory syncytial virus.
- Author
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Förster A, Maertens GN, Farrell PJ, and Bajorek M
- Subjects
- Blotting, Western, Chromatography, Gel, Crystallization, Dimerization, Electrophoresis, Polyacrylamide Gel, Humans, Microscopy, Confocal, Protein Conformation, Respiratory Syncytial Viruses metabolism, Viral Matrix Proteins genetics, Models, Molecular, Respiratory Syncytial Viruses genetics, Respiratory Syncytial Viruses physiology, Viral Matrix Proteins metabolism, Virus Assembly physiology, Virus Replication physiology
- Abstract
Unlabelled: Respiratory syncytial virus (RSV) infects epithelial cells of the respiratory tract and is a major cause of bronchiolitis and pneumonia in children and the elderly. The virus assembles and buds through the plasma membrane, forming elongated membrane filaments, but details of how this happens remain obscure. Oligomerization of the matrix protein (M) is a key step in the process of assembly and infectious virus production. In addition, it was suggested to affect the conformation of the fusion protein, the major current target for RSV antivirals, in the mature virus. The structure and assembly of M are thus key parameters in the RSV antiviral development strategy. The structure of RSV M was previously published as a monomer. Other paramyxovirus M proteins have been shown to dimerize, and biochemical data suggest that RSV M also dimerizes. Here, using size exclusion chromatography-multiangle laser light scattering, we show that the protein is dimeric in solution. We also crystallized M in two crystal forms and show that it assembles into equivalent dimers in both lattices. Dimerization interface mutations destabilize the M dimer in vitro. To assess the biological relevance of dimerization, we used confocal imaging to show that dimerization interface mutants of M fail to assemble into viral filaments on the plasma membrane. Additionally, budding and release of virus-like particles are prevented in M mutants that fail to form filaments. Importantly, we show that M is biologically active as a dimer and that the switch from M dimers to higher-order oligomers triggers viral filament assembly and virus production., Importance: Human respiratory syncytial virus (RSV) is the most frequent cause of infantile bronchiolitis and pneumonia. The enormous burden of RSV makes it a major unmet target for a vaccine and antiviral drug therapy. Oligomerization of the matrix protein is a key step in the process of assembly and production of infectious virus, but the molecular mechanism of RSV assembly is still poorly understood. Here we show that the RSV matrix protein forms dimers in solution and in crystals; the dimer is essential for formation of higher-order oligomers. Destabilizing the dimer interface resulted in the loss of RSV filament formation and a lack of budding of virus-like particles. Importantly, our findings can potentially lead to new structure-based RSV inhibitors targeting the assembly process., (Copyright © 2015, American Society for Microbiology. All Rights Reserved.)
- Published
- 2015
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32. New host factors important for respiratory syncytial virus (RSV) replication revealed by a novel microfluidics screen for interactors of matrix (M) protein.
- Author
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Kipper S, Hamad S, Caly L, Avrahami D, Bacharach E, Jans DA, Gerber D, and Bajorek M
- Subjects
- Animals, Cell Line, Cell Nucleus metabolism, Chlorocebus aethiops, Gene Library, HEK293 Cells, Humans, Open Reading Frames, Vero Cells, Virus Replication, Carrier Proteins metabolism, Caveolin 2 metabolism, Cofilin 1 metabolism, Microfluidic Analytical Techniques methods, Nuclear Proteins metabolism, Respiratory Syncytial Viruses physiology, Viral Matrix Proteins metabolism
- Abstract
Although human respiratory syncytial virus (RSV) is the most common cause of bronchiolitis and pneumonia in infants and elderly worldwide, there is no licensed RSV vaccine or effective drug treatment available. The RSV Matrix protein plays key roles in virus life cycle, being found in the nucleus early in infection in a transcriptional inhibitory role, and later localizing in viral inclusion bodies before coordinating viral assembly and budding at the plasma membrane. In this study, we used a novel, high throughput microfluidics platform and custom human open reading frame library to identify novel host cell binding partners of RSV matrix. Novel interactors identified included proteins involved in host transcription regulation, the innate immunity response, cytoskeletal regulation, membrane remodeling, and cellular trafficking. A number of these interactions were confirmed by immunoprecipitation and cellular colocalization approaches. Importantly, the physiological significance of matrix interaction with the actin-binding protein cofilin 1, caveolae protein Caveolin 2, and the zinc finger protein ZNF502 was confirmed. siRNA knockdown of the host protein levels resulted in reduced RSV virus production in infected cells. These results have important implications for future antiviral strategies aimed at targets of RSV matrix in the host cell., (© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.)
- Published
- 2015
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33. Respiratory syncytial virus infection, TLR3 ligands, and proinflammatory cytokines induce CD161 ligand LLT1 expression on the respiratory epithelium.
- Author
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Satkunanathan S, Kumar N, Bajorek M, Purbhoo MA, and Culley FJ
- Subjects
- Cell Line, Coculture Techniques, Cytokines pharmacology, Humans, Immunological Synapses immunology, Inflammation Mediators metabolism, Inflammation Mediators pharmacology, Lectins, C-Type metabolism, Ligands, Receptors, Cell Surface metabolism, Respiratory Mucosa drug effects, Respiratory Syncytial Virus Infections genetics, Respiratory Syncytial Virus Infections immunology, Respiratory Syncytial Virus Infections metabolism, T-Lymphocytes immunology, T-Lymphocytes metabolism, Virus Replication, Cytokines metabolism, Gene Expression Regulation drug effects, Lectins, C-Type genetics, NK Cell Lectin-Like Receptor Subfamily B metabolism, Receptors, Cell Surface genetics, Respiratory Mucosa metabolism, Respiratory Mucosa virology, Respiratory Syncytial Virus, Human physiology, Toll-Like Receptor 3 metabolism
- Abstract
Unlabelled: During respiratory-virus infection, excessive lymphocyte activation can cause pathology both in acute infection and in exacerbations of chronic respiratory diseases. The costimulatory molecule CD161 is expressed on lymphocyte subsets implicated in promoting respiratory inflammation, including Th2, Th17, mucosally associated invariant T (MAIT) cells, and type 2 innate lymphoid cells. We asked whether the CD161 ligand LLT1 could be expressed on respiratory epithelial cells following respiratory-virus infection as a mechanism by which respiratory-virus infection could promote activation of proinflammatory lymphocytes. In response to respiratory syncytial virus (RSV) infection, expression of LLT1 was upregulated in the BEAS-2B respiratory epithelial cell line and primary human bronchial epithelial cells. Imaging studies revealed that LLT1 expression increased in both RSV-infected and cocultured uninfected cells, suggesting that soluble factors produced during infection stimulate LLT1 expression. TLR3 and TLR2/6 ligands led to a rapid increase in LLT1 mRNA in respiratory epithelial cells, as did the proinflammatory cytokines type I interferons, interleukin 1β (IL-1β), and tumor necrosis factor alpha (TNF-α), which are produced early in respiratory-virus infection. Immunohistochemistry confirmed the increase in LLT1 protein on the epithelial cell surface, and live-cell confocal microscopy demonstrated accumulation of epithelial LLT1 at synapses formed with CD161(+) T lymphocytes. LLT1 expression by the respiratory epithelium in response to respiratory-virus infection and inflammatory cytokines represents a novel link between innate immunity and lymphocyte activation. As a regulator of CD161(+) proinflammatory lymphocytes, LLT1 could be a novel therapeutic target in inflammation caused by respiratory-virus infection., Importance: The immune response to respiratory-virus infection is essential for clearing the pathogen but, if excessive, can lead to tissue damage and obstruction of the airways. How viral infection activates immune cells in the lungs is not fully understood. Here, we show that LLT1 can be expressed in lung cells in response to infection. LLT1 triggers CD161, a receptor on inflammatory immune cells. This mechanism may promote activation of immune cells in the lungs in viral infection and could be a novel target for therapies aimed at reducing lung inflammation.
- Published
- 2014
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34. Interactions of the human LIP5 regulatory protein with endosomal sorting complexes required for transport.
- Author
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Skalicky JJ, Arii J, Wenzel DM, Stubblefield WM, Katsuyama A, Uter NT, Bajorek M, Myszka DG, and Sundquist WI
- Subjects
- ATPases Associated with Diverse Cellular Activities, Amino Acid Motifs, Animals, Cell Line, Endosomal Sorting Complexes Required for Transport genetics, Endosomal Sorting Complexes Required for Transport metabolism, Humans, Mice, Protein Binding, Protein Structure, Quaternary, Protein Structure, Tertiary, Rabbits, Structure-Activity Relationship, Vacuolar Proton-Translocating ATPases genetics, Vacuolar Proton-Translocating ATPases metabolism, Endosomal Sorting Complexes Required for Transport chemistry, Vacuolar Proton-Translocating ATPases chemistry
- Abstract
The endosomal sorting complex required for transport (ESCRT) pathway remodels membranes during multivesicular body biogenesis, the abscission stage of cytokinesis, and enveloped virus budding. The ESCRT-III and VPS4 ATPase complexes catalyze the membrane fission events associated with these processes, and the LIP5 protein helps regulate their interactions by binding directly to a subset of ESCRT-III proteins and to VPS4. We have investigated the biochemical and structural basis for different LIP5-ligand interactions and show that the first microtubule-interacting and trafficking (MIT) module of the tandem LIP5 MIT domain binds CHMP1B (and other ESCRT-III proteins) through canonical type 1 MIT-interacting motif (MIM1) interactions. In contrast, the second LIP5 MIT module binds with unusually high affinity to a novel MIM element within the ESCRT-III protein CHMP5. A solution structure of the relevant LIP5-CHMP5 complex reveals that CHMP5 helices 5 and 6 and adjacent linkers form an amphipathic "leucine collar" that wraps almost completely around the second LIP5 MIT module but makes only limited contacts with the first MIT module. LIP5 binds MIM1-containing ESCRT-III proteins and CHMP5 and VPS4 ligands independently in vitro, but these interactions are coupled within cells because formation of stable VPS4 complexes with both LIP5 and CHMP5 requires LIP5 to bind both a MIM1-containing ESCRT-III protein and CHMP5. Our studies thus reveal how the tandem MIT domain of LIP5 binds different types of ESCRT-III proteins, promoting assembly of active VPS4 enzymes on the polymeric ESCRT-III substrate.
- Published
- 2012
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35. Variants within the immunoregulatory CBLB gene are associated with multiple sclerosis.
- Author
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Sanna S, Pitzalis M, Zoledziewska M, Zara I, Sidore C, Murru R, Whalen MB, Busonero F, Maschio A, Costa G, Melis MC, Deidda F, Poddie F, Morelli L, Farina G, Li Y, Dei M, Lai S, Mulas A, Cuccuru G, Porcu E, Liang L, Zavattari P, Moi L, Deriu E, Urru MF, Bajorek M, Satta MA, Cocco E, Ferrigno P, Sotgiu S, Pugliatti M, Traccis S, Angius A, Melis M, Rosati G, Abecasis GR, Uda M, Marrosu MG, Schlessinger D, and Cucca F
- Subjects
- Genetic Predisposition to Disease, Genome-Wide Association Study, Humans, Polymorphism, Single Nucleotide, Adaptor Proteins, Signal Transducing genetics, Major Histocompatibility Complex, Multiple Sclerosis genetics, Proto-Oncogene Proteins c-cbl genetics
- Abstract
A genome-wide association scan of approximately 6.6 million genotyped or imputed variants in 882 Sardinian individuals with multiple sclerosis (cases) and 872 controls suggested association of CBLB gene variants with disease, which was confirmed in 1,775 cases and 2,005 controls (rs9657904, overall P = 1.60 x 10(-10), OR = 1.40). CBLB encodes a negative regulator of adaptive immune responses, and mice lacking the ortholog are prone to experimental autoimmune encephalomyelitis, the animal model of multiple sclerosis.
- Published
- 2010
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36. Structural basis for ESCRT-III protein autoinhibition.
- Author
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Bajorek M, Schubert HL, McCullough J, Langelier C, Eckert DM, Stubblefield WM, Uter NT, Myszka DG, Hill CP, and Sundquist WI
- Subjects
- Crystallography, X-Ray, Cytokinesis physiology, Dimerization, Endosomal Sorting Complexes Required for Transport, Endosomes metabolism, Humans, Models, Molecular, Multiprotein Complexes chemistry, Multiprotein Complexes metabolism, Oncogene Proteins genetics, Protein Subunits chemistry, Protein Subunits genetics, Protein Subunits metabolism, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Vesicular Transport Proteins genetics, Oncogene Proteins chemistry, Oncogene Proteins metabolism, Protein Conformation, Vesicular Transport Proteins chemistry, Vesicular Transport Proteins metabolism
- Abstract
Endosomal sorting complexes required for transport-III (ESCRT-III) subunits cycle between two states: soluble monomers and higher-order assemblies that bind and remodel membranes during endosomal vesicle formation, midbody abscission and enveloped virus budding. Here we show that the N-terminal core domains of increased sodium tolerance-1 (IST1) and charged multivesicular body protein-3 (CHMP3) form equivalent four-helix bundles, revealing that IST1 is a previously unrecognized ESCRT-III family member. IST1 and its ESCRT-III binding partner, CHMP1B, both form higher-order helical structures in vitro, and IST1-CHMP1 interactions are required for abscission. The IST1 and CHMP3 structures also reveal that equivalent downstream alpha5 helices can fold back against the core domains. Mutations within the CHMP3 core-alpha5 interface stimulate the protein's in vitro assembly and HIV-inhibition activities, indicating that dissociation of the autoinhibitory alpha5 helix from the core activates ESCRT-III proteins for assembly at membranes.
- Published
- 2009
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37. Biochemical analyses of human IST1 and its function in cytokinesis.
- Author
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Bajorek M, Morita E, Skalicky JJ, Morham SG, Babst M, and Sundquist WI
- Subjects
- ATPases Associated with Diverse Cellular Activities, Adenosine Triphosphatases metabolism, Animals, COS Cells, Carrier Proteins chemistry, Carrier Proteins metabolism, Chlorocebus aethiops, Endosomal Sorting Complexes Required for Transport, HIV-1 physiology, HeLa Cells, Humans, Nuclear Magnetic Resonance, Biomolecular, Nuclear Proteins metabolism, Oncogene Proteins chemistry, Oncogene Proteins metabolism, Protein Structure, Tertiary, Protein Transport physiology, Two-Hybrid System Techniques, Vacuolar Proton-Translocating ATPases, Vesicular Transport Proteins metabolism, Cytokinesis physiology, Oncogene Proteins physiology
- Abstract
The newly described yeast endosomal sorting complexes required for transport (ESCRT) protein increased sodium tolerance-1 (Ist1p) binds the late-acting ESCRT proteins Did2p/charged MVB protein (CHMP) 1 and Vps4p and exhibits synthetic vacuolar protein sorting defects when combined with mutations in the Vta1p/LIP5-Vps60p/CHMP5 complex. Here, we report that human IST1 also functions in the ESCRT pathway and is required for efficient abscission during HeLa cell cytokinesis. IST1 binding interactions with VPS4, CHMP1, LIP5, and ESCRT-I were characterized, and the IST1-VPS4 interaction was investigated in detail. Mutational and NMR spectroscopic studies revealed that the IST1 terminus contains two distinct MIT interacting motifs (MIM1 and MIM2) that wrap around and bind in different groves of the MIT helical bundle. IST1, CHMP1, and VPS4 were recruited to the midbodies of dividing cells, and depleting either IST1 or CHMP1 proteins blocked VPS4 recruitment and abscission. In contrast, IST1 depletion did not inhibit human immunodeficiency virus-1 budding. Thus, IST1 and CHMP1 act together to recruit and modulate specific VPS4 activities required during the final stages of cell division.
- Published
- 2009
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38. A proteasomal ATPase contributes to dislocation of endoplasmic reticulum-associated degradation (ERAD) substrates.
- Author
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Lipson C, Alalouf G, Bajorek M, Rabinovich E, Atir-Lande A, Glickman M, and Bar-Nun S
- Subjects
- Adenosine Triphosphatases metabolism, Adenosine Triphosphate chemistry, Amino Acid Motifs, Cadmium chemistry, Canavanine pharmacology, Endoplasmic Reticulum metabolism, Fungal Proteins chemistry, Green Fluorescent Proteins metabolism, Models, Biological, Phenotype, Protein Denaturation, Tunicamycin pharmacology, Valosin Containing Protein, Adenosine Triphosphatases chemistry, Cell Cycle Proteins metabolism, Endoplasmic Reticulum enzymology, Proteasome Endopeptidase Complex metabolism, Saccharomyces cerevisiae Proteins metabolism
- Abstract
Endoplasmic reticulum (ER)-associated degradation (ERAD) eliminates aberrant proteins from the ER by dislocating them to the cytoplasm where they are tagged by ubiquitin and degraded by the proteasome. Six distinct AAA-ATPases (Rpt1-6) at the base of the 19S regulatory particle of the 26S proteasome recognize, unfold, and translocate substrates into the 20S catalytic chamber. Here we show unique contributions of individual Rpts to ERAD by employing equivalent conservative substitutions of the invariant lysine in the ATP-binding motif of each Rpt subunit. ERAD of two substrates, luminal CPY*-HA and membrane 6myc-Hmg2, is inhibited only in rpt4R and rpt2RF mutants. Conversely, in vivo degradation of a cytosolic substrate, DeltassCPY*-GFP, as well as in vitro cleavage of Suc-LLVY-AMC are hardly affected in rpt4R mutant yet are inhibited in rpt2RF mutant. Together, we find that equivalent mutations in RPT4 and RPT2 result in different phenotypes. The Rpt4 mutation is manifested in ERAD defects, whereas the Rpt2 mutation is manifested downstream, in global proteasomal activity. Accordingly, rpt4R strain is particularly sensitive to ER stress and exhibits an activated unfolded protein response, whereas rpt2RF strain is sensitive to general stress. Further characterization of Rpt4 involvement in ERAD reveals that it participates in CPY*-HA dislocation, a function previously attributed to p97/Cdc48, another AAA-ATPase essential for ERAD of CPY*-HA but dispensable for proteasomal degradation of DeltassCPY*-GFP. Pointing to Cdc48 and Rpt4 overlapping functions, excess Cdc48 partially restores impaired ERAD in rpt4R, but not in rpt2RF. We discuss models for Cdc48 and Rpt4 cooperation in ERAD.
- Published
- 2008
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39. Quality control in the secretory pathway.
- Author
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Rabinovich E, Bussi D, Shapira I, Alalouf G, Lipson C, Elkabetz Y, Glickman M, Bajorek M, and Bar-Nun S
- Subjects
- Adenosine Triphosphatases metabolism, B-Lymphocytes, Humans, Immunoglobulin M, Proteins metabolism, Quality Control, Signal Transduction, Endoplasmic Reticulum physiology, Proteasome Endopeptidase Complex physiology, Ubiquitin physiology
- Published
- 2006
40. [G6PD phenotype and red blood cell sensitivity to the oxidising action of chlorites in drinking water].
- Author
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Contu A, Bajorek M, Carlini M, Meloni P, Cocco P, and Schintu M
- Subjects
- Chlorides analysis, Erythrocytes metabolism, Humans, Oxidation-Reduction, Phenotype, Chlorides pharmacology, Erythrocytes drug effects, Erythrocytes enzymology, Glucosephosphate Dehydrogenase genetics, Water chemistry
- Abstract
Chlorine dioxide is widely used to replace sodium hypochlorite in the disinfection of surface waters for human consumption, in order to avoid or reduce the formation of organohalogenated compounds with mutagenic and carcinogenic activity. However, chlorine dioxide may lead to the formation of by-products, such as chlorites and chlorates, that have an oxidative effect on the blood corpuscled fraction. In this investigation, blood crasis was assessed in relation to the G6PD phenotype and the consumption of tap water, disinfected with chlorine dioxide, or bottled mineral water from non-disinfected underground sources. The results show that the effect of oxidative stress resulting from the uptake of chlorites with drinking water is not additive to the effect due to G6PD deficiency. The observed change in haematological parameters, including those related to the G6PD polymorphism, is always within the normal range. However, it is still possible that more relevant changes would follow exposure to chlorites concentrations greater than that observed in the present study.
- Published
- 2005
41. PCR-RFLP analysis of a point mutation in codons 315 and 463 of the katG gene of Mycobacterium tuberculosis isolated from patients in Silesia, Poland.
- Author
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Wojtyczka RD, Dworniczak S, Pacha J, Idzik D, Kepa M, Wydmuch Z, Głab S, Bajorek M, Oklek K, and Kozielski J
- Subjects
- Antitubercular Agents pharmacology, Codon, Humans, Isoniazid pharmacology, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis isolation & purification, Poland, Tuberculosis, Pulmonary microbiology, Bacterial Proteins genetics, Catalase genetics, Drug Resistance, Bacterial genetics, Mycobacterium tuberculosis drug effects, Point Mutation, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length
- Abstract
Resistance to antituberculous agents is an important cause of ineffectiveness of antimicrobial therapy. The resistance of M. tuberculosis to antituberculous agents is a result of mutations in genes participating in those agent's action. The antituberculous drug--isoniazid can be activated by Mycobacterium tuberculosis either through a hydroperoxidase I/II or a superoxide-dependent oxyferrous pathway. The present study analyzed the frequency of the mutations occurring in codons 315 and 463 in katG gene of Mycobacterium tuberculosis strains, isolated from patients with pulmonary tuberculosis from Silesia, Poland. In this study 23 isoniazid-resistant Mycobacterium tuberculosis strains were analyzed. For RFLP analysis, a 620 bp amplified fragment of katG gene was digested with restriction endonuclease MspI. Among 24 isoniazid-resistant strains, isolated from patients between 2000-2001, point mutations were found in 30% of analyzed isoniazid-resistant strains in codons 315 or 463 (7 strains). In contrast, no mutations in codons 315 and/or 463 katG gene were found in 16 strains (70%). Obtained results suggests that point mutations S315T (AGC-->ACC) and R463L in katG gene are infrequent in the analyzed population.
- Published
- 2004
42. [Anti-HLA antibodies in nephropathic patients].
- Author
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Argiolas M, Piredda GB, Piras P, Corpino AM, Bajorek M, and Todde P
- Subjects
- B-Lymphocytes, Female, Flow Cytometry, Humans, Kidney Diseases surgery, Kidney Transplantation, Male, T-Lymphocytes, Antibodies blood, HLA Antigens immunology, Kidney Diseases blood
- Abstract
Background: The presence of anti-human leukocyte antigen (HLA) alloantibodies in nephropathic patients is due to immunogenic stimuli such as transfusions, pregnancies, and transplantations. These stimuli can be highlighted using a classic aspecific serologic technique, such as complement-dependent cytotoxicity (CDC) or using more recent and specific techniques, such as cytofluorimetrics or enzyme linked immunoabsorbant assay (ELISA). Because the presence of anti-HLA preformed antibodies is linked to the largest incidence of both acute and chronic rejection, it seems appropriate to re-evaluate that data obtained using aspecific classic serological analysis techniques by using the more specific cytofluorimetric technique. To aid in the possible prevention of ant-HLA antibody formation, it is also appropriate to analyze the influence of immunogenic stimuli on the development of these antibodies., Methods: We studied 116 patients (37 women and 79 men). Anti-HLA antibodies were detected using microlymphotoxic technique after separation of B and T lymphocytes. This separation was obtained using magnetic balls. We used a 30-cell panel. We also used a recent cytofluorimetric test (Flow Pra screening; One Lambda Inc., 21001 Kittridge St., Canoga Park, California, U.S.A.) with a panel of micrograins covered with class I and class II purified antigens. Statistical analysis was performed using chi-square analysis or Fischer s exact test. For each test, sensibility, specificity, and positive and negative value were measured., Results: Among 33 patients testing positive using the classic CDC-PRA technique (17 positive for B-lymphocytes and 16 positive for both B and T lymphocytes), using cytometry, 25 were positive for anti-HLA-specific antibodies (10 among the B lymphocyte-positive patients and 15 among the B + T lymphocyte-positive patients). Two patients were shown positive only using the cytofluorimetric method. Of the 27 patients positive at cytometry, 18 were positive for class I and class II, 4 for class I, and 5 for class II. FLOW-PRA screening results were less sensitive and more specific. The results obtained by the two methods are comparable(p<0.0001). The immunogenic stimuli found responsible for immunization were: transfusion in 10 of 25 patients, pregnancies in 3/9 patients, transplant in 4/8 patients, and different immunogenic stimuli in 10/12 patients. The results were not statistically significant (p>0.05)., Conclusions: Data show that positivity for B lymphocytes obtained using CDC-PRA is not always linked to the development of anti-HLA antibodies, whereas positivity for B+T lymphocytes, obtained using CDC -PRA, is often linked to specific antibody development. Immune response is more often directed against class I and II antibodies. The specific detection of HLA antibodies using the cytofluorimetric method allows us to identify patients at risk for rejection, and it suggests that red cells should be filtrated to prevent anti-HLA immunization secondary to transfusion in transplantation candidates.
- Published
- 2003
43. Proteasome disassembly and downregulation is correlated with viability during stationary phase.
- Author
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Bajorek M, Finley D, and Glickman MH
- Subjects
- Caseins metabolism, Cysteine Endopeptidases genetics, Electrophoresis, Fluorescence, Multienzyme Complexes genetics, Proteasome Endopeptidase Complex, Saccharomyces cerevisiae, Cell Cycle physiology, Cysteine Endopeptidases metabolism, Down-Regulation physiology, Multienzyme Complexes metabolism, Mutation genetics
- Abstract
During prolonged starvation, yeast cells enter a stationary phase (SP) during which the synthesis of many proteins is dramatically decreased. We show that a parallel decrease in proteasome-dependent proteolysis also occurs. The reduction in proteolysis is correlated with disassembly of 26S proteasome holoenzymes into their 20S core particle (CP) and 19S regulatory particle (RP) components. Proteasomes are reassembled, and proteolysis resumes prior to cell cycle reentry. Free 20S CPs are found in an autoinhibited state in which the N-terminal tails from neighboring alpha subunits are anchored by an intricate lattice of interactions blocking the channel that leads into the 20S CPs. By deleting channel gating residues of CP alpha subunits, we generated an "open channel" proteasome that exhibits faster rates of protein degradation both in vivo and in vitro, indicating that gating contributes to regulation of proteasome activity. This open channel mutant is delayed in outgrowth from SP and cannot survive following prolonged starvation. In summary, we have found that the ubiquitin-proteasome pathway can be subjected to global downregulation, that the proteasome is a target of this regulation, and that proteasome downregulation is linked to survival of SP cells. Maintaining high viability during SP is essential for evolutionary fitness, which may explain the extreme conservation of channel gating residues in eukaryotic proteasomes.
- Published
- 2003
- Full Text
- View/download PDF
44. A gated channel into the proteasome core particle.
- Author
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Groll M, Bajorek M, Köhler A, Moroder L, Rubin DM, Huber R, Glickman MH, and Finley D
- Subjects
- Amino Acid Motifs genetics, Amino Acid Sequence, Conserved Sequence, Crystallography, X-Ray, Cysteine Endopeptidases genetics, Holoenzymes chemistry, Holoenzymes genetics, Holoenzymes metabolism, Humans, Hydrolysis, Models, Molecular, Molecular Sequence Data, Multienzyme Complexes antagonists & inhibitors, Multienzyme Complexes genetics, Mutation genetics, Peptide Fragments chemistry, Peptide Fragments genetics, Peptide Fragments metabolism, Proteasome Endopeptidase Complex, Protein Structure, Quaternary, Protein Subunits, Saccharomyces cerevisiae genetics, Sequence Alignment, Structure-Activity Relationship, Cysteine Endopeptidases chemistry, Cysteine Endopeptidases metabolism, Multienzyme Complexes chemistry, Multienzyme Complexes metabolism, Saccharomyces cerevisiae enzymology
- Abstract
The core particle (CP) of the yeast proteasome is composed of four heptameric rings of subunits arranged in a hollow, barrel-like structure. We report that the CP is autoinhibited by the N-terminal tails of the outer (alpha) ring subunits. Crystallographic analysis showed that deletion of the tail of the alpha 3-subunit opens a channel into the proteolytically active interior chamber of the CP, thus derepressing peptide hydrolysis. In the latent state of the particle, the tails prevent substrate entry by imposing topological closure on the CP. Inhibition by the alpha-subunit tails is relieved upon binding of the regulatory particle to the CP to form the proteasome holoenzyme.
- Published
- 2000
- Full Text
- View/download PDF
45. Effective administration of recombinant tissue plasminogen activator (rt-PA) during resuscitation of a post partum patient with massive pulmonary embolism.
- Author
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Cyrkowicz A, Bajorek M, Nytko J, Solarz W, Weryński W, and Orczyk K
- Subjects
- Adult, Female, Humans, Infant, Newborn, Labor, Obstetric, Pregnancy, Pulmonary Embolism etiology, Recombinant Proteins therapeutic use, Puerperal Disorders drug therapy, Pulmonary Embolism drug therapy, Resuscitation, Tissue Plasminogen Activator therapeutic use
- Abstract
Severe pulmonary embolism with cardiac arrest occurred half an hour after the 5th spontaneous delivery in a 34-year-old multipara. Standard resuscitation for 30 minutes remained ineffective. Only after Actilyse rt-PA infusion the patient's state improved. She regained consciousness on the third day. After 32 days of hospital treatment the patient was discharged in a generally good condition. Today, 5 years after the described event her state of health is very good.
- Published
- 1999
46. [Spinal analgesia and perioperative low molecular weight heparin (LMWH) prophylaxis of thrombosis. Safety aspect].
- Author
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Cyrkowicz A, Orczyk K, Bajorek M, Kawecki J, and Jackowski P
- Subjects
- Adult, Anesthesia, Spinal, Female, Humans, Injections, Spinal, Heparin, Low-Molecular-Weight therapeutic use, Perioperative Care, Safety, Thrombophlebitis prevention & control
- Abstract
For many gynecological surgery patients belonging to deep vein thrombosis (DVT) high-risk group the analgesia of choice is regional spinal analgesia. Perioperatively LMWH--Fraxiparine was administered to 426 gynecological surgery patients and to 113 caesarean section patients. The first dose 7500 ICU s.c. was administered 2 hours before operation and consecutive ones every 24 hours for 5 to 7 days. The drug didn't cause any anaesthesia complications like enhanced bleeding after lumbar punction. It was emphasised in the discussion that in choosing this kind of prophylaxis certain conditions should be fulfilled in order to avoid spinal hematoma.
- Published
- 1997
47. [Appendiceal abscess in the third gestational trimester of pregnancy, complications pre and postoperatively].
- Author
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Cyrkowicz A, Cibor Z, Słowińska-Zabówka M, Kisiel W, Oleksy P, Orczyk K, Bajorek M, and Kwiek G
- Subjects
- Adult, Diagnosis, Differential, Female, Fetal Death, Humans, Postoperative Complications, Pregnancy, Pregnancy Outcome, Pregnancy Trimester, Third, Shock, Septic etiology, Abscess etiology, Appendicitis etiology, Diagnostic Errors, Obstetric Labor, Premature, Pregnancy Complications, Infectious diagnosis, Urinary Tract Infections diagnosis
- Abstract
Delayed surgical intervention connected with misdiagnosis of preterm labour and urinary tract infection caused in gravida 3 in 34th gestational week appendiceal abscess, septic shock, stillbirth by cesarean section, necessity of hysterectomy, recidivism of multi peritoneal and pleural abscesses. Although the patient was rescued the retrospective pro memoria considerations of our procedure are regarded.
- Published
- 1996
48. Occupational medicine content of Oregon family physician practices.
- Author
-
Goodwin P, Wall EM, and Bajorek M
- Subjects
- Curriculum, Data Collection, Disability Evaluation, Humans, Oregon, Family Practice education, Family Practice trends, Occupational Medicine education, Occupational Medicine trends
- Abstract
Background: Little has been published in the medical literature about the occupational medicine content of family practice. Little is known about the educational interventions needed for family physicians to improve the care they provide to patients suffering from occupational-related disorders., Methods: A questionnaire based on a curriculum in occupational medicine proposed by a subcommittee of the Education Committee of the American Academy of Family Physicians for the guidance of family practice residency directors was sent to a random sample of 100 Oregon family physicians from a total of approximately 570 active practicing members of the Oregon Academy of Family Physicians. Ninety-three completed questionnaires were returned., Results: Occupational medicine constituted a significant part (14 percent) of the practices of Oregon family physicians. The respondents rated management of chronic disability, disability determination, repetitive trauma disorders, and legal issues as the most important occupational medicine problems in their practices. These issues were also those about which they thought they needed additional training., Conclusions: Education in occupational medicine for family physicians must be better tailored to fit their needs and their priorities. The responses to this survey of practicing family physicians in Oregon suggest that more training in the areas of chronic disability management, disability determination, the management of repetitive trauma disorders, and legal aspects of occupational disorders is needed.
- Published
- 1995
49. Screening children for lead poisoning.
- Author
-
Bajorek MM
- Subjects
- Child, Child, Preschool, Humans, Infant, Lead Poisoning diagnosis, Lead Poisoning therapy, Lead Poisoning prevention & control, Mass Screening
- Published
- 1995
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