96 results on '"Bakan B"'
Search Results
2. Science-based evidence on pathways and effects of human exposure to micro- and nanoplastics
- Author
-
Bakan Buket, Kalčec Nikolina, Liu Sijin, Ilić Krunoslav, Qi Yu, Capjak Ivona, Božičević Lucija, Peranić Nikolina, and Vrček Ivana Vinković
- Subjects
adverse outcome ,plastic particles ,regulatory-relevant data ,risk assessment, risk management ,materijali plastike ,nepovoljan ishod ,procjena rizika ,regulacijski značajni podatci ,upravljanje rizikom ,Toxicology. Poisons ,RA1190-1270 - Abstract
Human exposure to plastic particles has raised great concern among all relevant stakeholders involved in the protection of human health due to the contamination of the food chain, surface waters, and even drinking water as well as due to their persistence and bioaccumulation. Now more than ever, it is critical that we understand the biological fate of plastics and their interaction with different biological systems. Because of the ubiquity of plastic materials in the environment and their toxic potential, it is imperative to gain reliable, regulatory-relevant, science-based data on the effects of plastic micro- and nanoparticles (PMNPs) on human health in order to implement reliable risk assessment and management strategies in the circular economy of plastics. This review presents current knowledge of human-relevant PMNP exposure doses, pathways, and toxic effects. It addresses difficulties in properly assessing plastic exposure and current knowledge gaps and proposes steps that can be taken to underpin health risk perception, assessment, and mitigation through rigorous science-based evidence. Based on the existing scientific data on PMNP adverse health effects, this review brings recommendations on the development of PMNP-specific adverse outcome pathways (AOPs) following the AOP Users’ Handbook of the Organisation for Economic Cooperation and Development (OECD).
- Published
- 2024
- Full Text
- View/download PDF
3. Acute and chronic exposure to air pollution in relation with incidence, prevalence, severity and mortality of COVID-19: a rapid systematic review
- Author
-
Katoto, PDMC, Brand , AS, Bakan, B, Obadia, PM, Kuhangana, C, Kayembe-Kitenge, T, Kitenge, JP, Nkulu, CBL, Vanoirbeek, J, NAWROT, Tim, Hoet, P, and Nemery, B
- Subjects
Lethality ,Long-term air pollution ,SARS-CoV-2 ,Susceptibility ,Short-term ,Burden - Abstract
Background Air pollution is one of the world's leading mortality risk factors contributing to seven million deaths annually. COVID-19 pandemic has claimed about one million deaths in less than a year. However, it is unclear whether exposure to acute and chronic air pollution influences the COVID-19 epidemiologic curve. Methods We searched for relevant studies listed in six electronic databases between December 2019 and September 2020. We applied no language or publication status limits. Studies presented as original articles, studies that assessed risk, incidence, prevalence, or lethality of COVID-19 in relation with exposure to either short-term or long-term exposure to ambient air pollution were included. All patients regardless of age, sex and location diagnosed as having COVID-19 of any severity were taken into consideration. We synthesised results using harvest plots based on effect direction. Results Included studies were cross-sectional (n = 10), retrospective cohorts (n = 9), ecological (n = 6 of which two were time-series) and hypothesis (n = 1). Of these studies, 52 and 48% assessed the effect of short-term and long-term pollutant exposure, respectively and one evaluated both. Pollutants mostly studied were PM2.5 (64%), NO2 (50%), PM10 (43%) and O-3 (29%) for acute effects and PM2.5 (85%), NO2 (39%) and O-3 (23%) then PM10 (15%) for chronic effects. Most assessed COVID-19 outcomes were incidence and mortality rate. Acutely, pollutants independently associated with COVID-19 incidence and mortality were first PM2.5 then PM10, NO2 and O-3 (only for incident cases). Chronically, similar relationships were found for PM2.5 and NO2. High overall risk of bias judgments (86 and 39% in short-term and long-term exposure studies, respectively) was predominantly due to a failure to adjust aggregated data for important confounders, and to a lesser extent because of a lack of comparative analysis. Conclusion The body of evidence indicates that both acute and chronic exposure to air pollution can affect COVID-19 epidemiology. The evidence is unclear for acute exposure due to a higher level of bias in existing studies as compared to moderate evidence with chronic exposure. Public health interventions that help minimize anthropogenic pollutant source and socio-economic injustice/disparities may reduce the planetary threat posed by both COVID-19 and air pollution pandemics. We are grateful to Dr. Lilian Byamungu, MD. MSc (Clinincal Epidemiology) (University of KwaZulu-Natal, South Africa) for her critical appraisal of the manuscript and methodological approach. Our gratitude goes also to the memory of Mr. Hikmet BAKAN for supporting this work since the beginning but who passed way after a COVID-19 infection.
- Published
- 2021
4. Assessment of enthesopathy in patients with fibromyalgia by using new sonographic enthesitis index: APLAR-0130
- Author
-
OZKAN, F, BAKAN, B, INCI, M F, KOCTURK, F, YILDIRIM CETIN, G, YUKSEL, M, and SAYARLIOGLU, M
- Published
- 2013
5. Identification by PCR of Fusarium culmorum stains producing large and small amounts of deoxynivalenol
- Author
-
Bakan, B., Giraud-Deville, C., Pinson, L., Richard-Molard, D., Fournier, E., and Brygoo, Y.
- Subjects
Fusarium -- Genetic aspects ,Fusarium -- Physiological aspects ,Biological sciences - Abstract
Research has been conducted on deoxynivalenol-producing Fusarium culmorum stains. The genetic relationship between the strains have been investigated via the use of analysis of gene and intergenetic region, and the results are reported.
- Published
- 2002
6. Immunoglobulin-E-binding epitopes of wheat allergens in patients with food allergy to wheat and in mice experimentally sensitized to wheat proteins
- Author
-
Denery-Papini, S., Bodinier, M., Pineau, F., Triballeau, S., Tranquet, O., Adel-Patient, K., Moneret-Vautrin, D. A., Bakan, B., Marion, D., Mothes, T., Mameri, H., and Kasarda, D.
- Published
- 2011
- Full Text
- View/download PDF
7. L-glutamic acid-g-poly hydroxyethyl methacrylate nanoparticles: acute and sub-acute toxicity and biodistribution potential in mice
- Author
-
Bakan Buket, Oltulu Fatih, Yıldırım Yeliz, Yavaşoğlu Altuğ, Akgöl Sinan, and Karabay Yavaşoğlu Nefise Ülkü
- Subjects
biocompatibility ,blood biochemistry ,genotoxicity ,histology ,in vivo toxicity ,micronucleus test ,polymers ,biokompatibilnost ,biokemija krvi ,genotoksičnost ,histologija ,in vivo toksičnost ,mikronukleus test ,polimeri ,Toxicology. Poisons ,RA1190-1270 - Abstract
The aim of this safety study in mice was to determine in vivo toxicity and biodistribution potential of a single and multiple doses of L-glutamic acid-g-p(HEMA) polymeric nanoparticles as a drug delivery system. The single dose did not cause any lethal effect, and its acute oral LD50 was >2.000 mg/kg body weight (bw). Multiple doses (25, 50, or 100 mg/kg bw) given over 28 days resulted in no significant differences in body and relative organ weights compared to control. These results are supported by biochemical and histological findings. Moreover, nanoparticle exposure did not result in statistically significant differences in micronucleus counts in bone marrow cells compared to control. Nanoparticle distribution was time-dependent, and they reached the organs and even bone marrow by hour 6, as established by ex vivo imaging with the IVIS® spectrum imaging system. In conclusion, L-glutamic acid-g-p(HEMA) polymeric nanoparticles appear biocompatible and have a potential use as a drug delivery system.
- Published
- 2023
- Full Text
- View/download PDF
8. Comparison of IgE-binding epitopes on wheat gliadins for patients with food allergy and experimentally sensitized mice
- Author
-
Bodinier, M., Denery, S., Pineau, F., Triballeau, S., Leroy, M., Tranquet, O., Adel-Patient, K., Moneret-Vautrin, D., Bakan, B., Didier MARION, Lelion, A., Mothes, T., Mameri, H., Kasarda, D., Unité de recherche sur les Biopolymères, Interactions Assemblages (BIA), Institut National de la Recherche Agronomique (INRA), Unité de Recherche Immuno-Allergie Alimentaire, Université Nancy 2, Institute for Laboratory Medicine, Otto Wagner Hospital Vienna, Agricultural Research Service , US Department of Agriculture, Dairy Forage Research Center, The European Academy of Allergy and Clinical Immunology (EAACI). Zurich, CHE., and ProdInra, Migration
- Subjects
food allergy ,wheat allergic patients ,[SDV.MHEP] Life Sciences [q-bio]/Human health and pathology ,wheat ,food and beverages ,mouse model of allergy ,epitopes ,gliadins ,[SDV.MHEP]Life Sciences [q-bio]/Human health and pathology - Abstract
International audience; Mice models of allergy to wheat proteins have been recently developed but have not been characterized for epitope pattern. In our laboratory, mice were sensitized with total gliadins and produced IgE antibodies that recognize the different gliadin classes :α,β,γ, *1,2 and *5. The relevance of this mouse model has to be evaluated regarding IgE-binding epitopes. The aim of the study is to compare B-cell epitopes in wheat allergic patients and sensitized mice in order to find out whether IgE antibodies elicited in mice are representative of human ones.
- Published
- 2011
9. Dehydrodimers of ferulic acid in maize grain pericarp and aleurone : resistance factors to Fusarium graminearum
- Author
-
Bily, A.C., Reid, L.M., Taylor, J.H., Johnston, D., Malouin, C., Burt, A.J., Bakan, B., Regnault-Roger, Catherine, Pauls, K.P., Arnason, J.T., Philogène, B.J.R., ProdInra, Migration, Unité de microbiologie et technologie céréalières, Institut National de la Recherche Agronomique (INRA), Laboratoire Charles Fabry de l'Institut d'Optique / Elsa, Laboratoire Charles Fabry de l'Institut d'Optique (LCFIO), Centre National de la Recherche Scientifique (CNRS)-Institut d'Optique Graduate School (IOGS)-Université Paris-Sud - Paris 11 (UP11)-Centre National de la Recherche Scientifique (CNRS)-Institut d'Optique Graduate School (IOGS)-Université Paris-Sud - Paris 11 (UP11), Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM), and Université de Pau et des Pays de l'Adour (UPPA)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
food and beverages ,[SDV.BV]Life Sciences [q-bio]/Vegetal Biology ,ComputingMilieux_MISCELLANEOUS ,[SDV.BV.PEP] Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy ,[SDV.BV.PEP]Life Sciences [q-bio]/Vegetal Biology/Phytopathology and phytopharmacy - Abstract
cited By 81; International audience; The relationship between the primary cell wall phenolic acids, dehydrodimers of ferulic acid, and maize grain resistance to Fusarium graminearum, the causal agent of gibberella ear rot, was investigated. Concentrations of dehydrodimers of ferulic acid were determined in the pericarp and aleurone tissues of five inbreds and two hybrids of varying susceptibility and in a segregating population from a cross between a resistant and susceptible inbred. Significant negative correlations were found between disease severity and diferulic acid content. Even stronger correlations were observed between diferulic acid and the fungal steroid ergosterol, which is an indicator of fungal biomass in infected plant tissue. These results were consistent over two consecutive field seasons, which differed significantly for temperature and rainfall during pollination, the most susceptible stage of ear development. No correlation was found between the levels of these phenolics and deoxynivalenol levels. This is the first report of in vivo evidence that the dehydrodimers of ferulic acid content in pericarp and aleurone tissues may play a role in genotypic resistance of maize to gibberella ear rot.
- Published
- 2003
10. The crystal structure of oxylipin-conjugated barley LTP1 highlights the unique plasticity of the hydrophobic cavity of these plant lipid-binding proteins
- Author
-
Bakan, B., Hamberg, M., Larue, V., Prangé, T., Marion, D., and Lascombe, M.-B.
- Published
- 2009
- Full Text
- View/download PDF
11. Identification of gliadin as an advanced glycation end product-modified compound in bread crust extract and their effect on mouse macrophage activation
- Author
-
Pötzsch, S., primary, Dalgalarrondo, M., additional, Bakan, B., additional, Marion, D., additional, Somoza, V., additional, Silber, R.-E., additional, Simm, A., additional, and Santos, A.Navarrete, additional
- Published
- 2013
- Full Text
- View/download PDF
12. OP-091 EVALUATION OF Tp-e INTERVAL AND Tp-e/QT RATIO IN PATIENTS WITH ANKYLOSING SPONDYLITIS
- Author
-
Acar, G., primary, Yorgun, H., additional, Akkoyun, M., additional, Bakan, B., additional, Nacar, A.B., additional, Dırnak, İ., additional, Çetin, G.Y., additional, and Bozoglan, O., additional
- Published
- 2013
- Full Text
- View/download PDF
13. Three-dimensional structure of a post translational modified barley LTP1
- Author
-
Lascombe, M.B., primary, Prange, T., additional, Bakan, B., additional, and Marion, D., additional
- Published
- 2009
- Full Text
- View/download PDF
14. Three-dimensional structure of a post translational modified barley LTP1
- Author
-
Lascombe, M.-B., primary, Prange, T., additional, Bakan, B., additional, and Marion, D., additional
- Published
- 2009
- Full Text
- View/download PDF
15. X-ray structure of the self-defense and signaling protein DIR1 from Arabidopsis taliana
- Author
-
Lascombe, M.B., primary, Prange, T., additional, Buhot, N., additional, Marion, D., additional, Bakan, B., additional, and Lamb, C., additional
- Published
- 2008
- Full Text
- View/download PDF
16. Isolation of eight polymorphic microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Fusarium culmorum
- Author
-
Giraud, T., primary, Fournier, E., additional, Vautrin, D., additional, Solignac, M., additional, Vercken, E., additional, Bakan, B., additional, and Brygoo, Y., additional
- Published
- 2002
- Full Text
- View/download PDF
17. Fungal Growth and Fusarium Mycotoxin Content in Isogenic Traditional Maize and Genetically Modified Maize Grown in France and Spain
- Author
-
Bakan, B., primary, Melcion, D., additional, Richard-Molard, D., additional, and Cahagnier, B., additional
- Published
- 2002
- Full Text
- View/download PDF
18. Toxigenic potential of Fusarium culmorum strains isolated from French wheat
- Author
-
Bakan, B., primary, Pinson, L., additional, Cahagnier, B., additional, Melcion, D., additional, Sémon, E., additional, and Richard-Molard, D., additional
- Published
- 2001
- Full Text
- View/download PDF
19. PP54 - Identification of gliadin as an advanced glycation end product-modified compound in bread crust extract and their effect on mouse macrophage activation
- Author
-
Pötzsch, S., Dalgalarrondo, M., Bakan, B., Marion, D., Somoza, V., Silber, R.-E., Simm, A., and Santos, A.Navarrete
- Published
- 2013
- Full Text
- View/download PDF
20. PRIMER NOTE Isolation of eight polymorphic microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Fusarium culmorum
- Author
-
Giraud, T., Fournier, E., Vautrin, D., Solignac, M., Vercken, E., Bakan, B., and Brygoo, Y.
- Abstract
We report the development of eight microsatellite markers in the haploid filamentous fungus Fusarium culmorum, a pathogen of numerous cereal crops. An enrichment protocol was used to isolate microsatellite loci, and polymorphism was explored with isolates of Fusarium culmorum and F. graminearum from natural populations collected from several French locations.
- Published
- 2002
- Full Text
- View/download PDF
21. Increased Enthesopathy in Patients With Familial Mediterranean Fever Evaluation With a New Sonographic Enthesitis Index
- Author
-
Hasan Cetin Ekerbicer, Gozde Yildirim Cetin, Mehmet Sayarlioglu, Mehmet Fatih Inci, Murvet Yuksel, Fuat Ozkan, Betul Bakan, Ozkan, F, Cetin, GY, Inci, MF, Bakan, B, Yuksel, M, Ekerbicer, HC, Sayarlioglu, M, Sakarya Üniversitesi/Tıp Fakültesi/Dahili Tıp Bilimleri Bölümü, and Ekerbiçer, Hasan Çetin
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,Spondyloarthropathy ,Familial Mediterranean fever ,Comorbidity ,Tendons ,Young Adult ,Rheumatic Diseases ,Internal medicine ,Humans ,Medicine ,Radiology, Nuclear Medicine and imaging ,Ultrasonography ,Radiological and Ultrasound Technology ,Receiver operating characteristic ,business.industry ,Incidence ,Enthesopathy ,Incidence (epidemiology) ,Radiology, Nuclear Medicine & Medical Imaging ,Enthesitis ,Patella ,Middle Aged ,medicine.disease ,Confidence interval ,Familial Mediterranean Fever ,Causality ,Calcaneus ,ROC Curve ,Case-Control Studies ,Physical therapy ,Female ,medicine.symptom ,business - Abstract
OBJECTIVES The aim of this study was to determine the frequency of enthesopathy in familial Mediterranean fever by using a newly developed sonographic method, the Madrid Sonographic Enthesitis Index (MASEI). METHODS The study included 50 consecutive patients with familial Mediterranean fever and 57 healthy sex- and age-matched control participants. Six entheseal sites (olecranon tuberosity, superior and inferior poles of the patella, tibial tuberosity, and superior and inferior poles of the calcaneus) on both lower limbs were evaluated. All sonographic findings were identified according to MASEI. Validity was analyzed by receiver operating characteristic curves. P < .05 was considered significant. RESULTS Mean total enthesitis scores ± SD were 7.54 ± 4.99 for patients and 3.63 ± 3.03 for controls (P < .001). No statistically significant correlation was found between the MASEI score and familial Mediterranean fever duration or colchicine treatment duration. There was no difference between the MASEI score and the presence or absence of arthritic involvement among the patients. The area under the receiver operating characteristic curve was 0.74 (95% confidence interval, 0.649-0.839). When analyzed by sex, men with familial Mediterranean fever had significantly higher MASEI scores than women (P < .05). CONCLUSIONS This study showed significant enthesopathy in patients with familial Mediterranean fever. The findings support the hypothesis that familial Mediterranean fever and spondyloarthropathy may have common inflammatory mechanisms and suggest that the MASEI scoring system can be incorporated into clinical protocols for studying patients with familial Mediterranean fever in daily practice.
- Published
- 2013
22. Sonographic evaluation of subclinical entheseal involvement in patients with Behçet disease
- Author
-
Murvet Yuksel, Hasan Cetin Ekerbicer, Mehmet Sayarlioglu, Fuat Ozkan, Ali Murat Kalender, Gozde Yildirim Cetin, Betül Bakan, Ozkan, F, Cetin, GY, Bakan, B, Kalender, AM, Yuksel, M, Ekerbicer, HC, Sayarlioglu, M, Sakarya Üniversitesi/Tıp Fakültesi/Dahili Tıp Bilimleri Bölümü, and Ekerbiçer, Hasan Çetin
- Subjects
Adult ,Male ,medicine.medical_specialty ,Arthritis ,Sensitivity and Specificity ,Statistics, Nonparametric ,Internal medicine ,Rheumatic Diseases ,medicine ,Prevalence ,Humans ,Radiology, Nuclear Medicine and imaging ,Subclinical infection ,Ultrasonography ,Receiver operating characteristic ,business.industry ,Enthesopathy ,Behcet Syndrome ,Ultrasound ,Radiology, Nuclear Medicine & Medical Imaging ,Case-control study ,Enthesitis ,General Medicine ,medicine.disease ,Surgery ,stomatognathic diseases ,Logistic Models ,ROC Curve ,Case-Control Studies ,Mann–Whitney U test ,Female ,medicine.symptom ,business - Abstract
The aim of the current study was to determine the prevalence of subclinical entheseal involvement in patients with Behçet disease via ultrasound using a newly developed method, the Madrid sonography enthesitis index.The study was conducted with 36 patients with Behçet disease and 46 healthy sex- and age-matched control subjects. All patients with Behçet disease who had no clinical evidence of arthritis or enthesitis underwent an ultrasound examination. All sonographic findings were identified according to the Madrid sonography enthesitis index. Madrid sonography enthesitis index values of patients and control subjects were compared by Student t test and Mann-Whitney U test. Validity was analyzed by receiver operating characteristic curve.Total enthesitis score was 12.16 ± 6.16 among patients with Behçet disease and 2.06 ± 2.18 among healthy control subjects (p0.001). The receiver operating characteristic curve established an ultrasound score greater than 4.5 in the Behçet disease group as the best cut-off point differentiating case subjects from control subjects. This cutoff was exceeded by 88.8% of the patients with Behçet disease. When the Madrid sonography enthesitis index score in each affected enthesis was evaluated, patients with Behçet disease had significantly higher scores than did control subjects when all entheseal sites were compared (all p values0.05).This is the first study to our knowledge to show significant subclinical enthesopathy of the triceps tendon enthesis in patients with Behçet disease who had no arthritic involvement. These data suggest that the Madrid sonography enthesitis index scoring system for sonographic detection of enthesopathy should be incorporated into the clinical protocol for evaluating patients with Behçet disease in routine clinical practice.
- Published
- 2012
23. Toxicological investigation of bisphenol A and its derivates on human breast epithelial (MCF-10A) cells.
- Author
-
Bakan B, Kaptaner B, Tokmak M, Aykut H, Mendil AS, and Özkaraca M
- Subjects
- Humans, Cell Line, Female, Glutathione metabolism, Autophagy drug effects, Breast drug effects, Breast cytology, Caspase 3 metabolism, Bisphenol A Compounds, Bisphenol S Compounds, Bisphenol F Compounds, Phenols toxicity, Benzhydryl Compounds toxicity, Sulfones toxicity, Apoptosis drug effects, Epithelial Cells drug effects, Epithelial Cells metabolism, Endocrine Disruptors toxicity, Cell Survival drug effects
- Abstract
Bisphenols can enter the body, where they have potential adverse effects on human health, via different routes such as inhalation, dermally or orally. They are known as endocrine disrupting chemicals that activate signaling pathways by mimicking the estrogen actions. In this study, we aimed to investigate effects of bisphenol A (BPA), and its analogues bisphenol F (BPF) and bisphenol S (BPS) on MCF-10A cells and their impact mechanisms on autophagy, apoptosis and reduced glutathion levels. In comparison of the cytotoxic effects, while BPF and BPS showed dose-dependent high toxicity on MCF-10A cells, BPA exerted cytotoxic effects only at the highest doses. Caspase 3 and LC3B are strongly and positively correlated with BPF exposures while significant changes were not detected in the BPA and BPS applied groups. It was clearly observed that BPF and BPS displayed more toxic effects than BPA on human breast cells that are important targets for the bisphenols. These findings provide data for understanding the mechanisms for BPA, BPF and BPS-induced toxicity on human breast cells., Competing Interests: Declaration of competing interest The authors declared no conflicts of interest., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2025
- Full Text
- View/download PDF
24. An ancient role for CYP73 monooxygenases in phenylpropanoid biosynthesis and embryophyte development.
- Author
-
Knosp S, Kriegshauser L, Tatsumi K, Malherbe L, Erhardt M, Wiedemann G, Bakan B, Kohchi T, Reski R, and Renault H
- Subjects
- Marchantia genetics, Marchantia metabolism, Coumaric Acids metabolism, Trans-Cinnamate 4-Monooxygenase metabolism, Trans-Cinnamate 4-Monooxygenase genetics, Anthocerotophyta genetics, Anthocerotophyta metabolism, Bryopsida genetics, Bryopsida metabolism, Bryopsida growth & development, Bryopsida enzymology, Cytochrome P-450 Enzyme System genetics, Cytochrome P-450 Enzyme System metabolism, Phylogeny, Embryophyta genetics, Embryophyta metabolism, Propionates metabolism, Propanols metabolism, Evolution, Molecular, Gene Expression Regulation, Plant, Plant Proteins metabolism, Plant Proteins genetics
- Abstract
The phenylpropanoid pathway is one of the plant metabolic pathways most prominently linked to the transition to terrestrial life, but its evolution and early functions remain elusive. Here, we show that activity of the t-cinnamic acid 4-hydroxylase (C4H), the first plant-specific step in the pathway, emerged concomitantly with the CYP73 gene family in a common ancestor of embryophytes. Through structural studies, we identify conserved CYP73 residues, including a crucial arginine, that have supported C4H activity since the early stages of its evolution. We further demonstrate that impairing C4H function via CYP73 gene inactivation or inhibitor treatment in three bryophyte species-the moss Physcomitrium patens, the liverwort Marchantia polymorpha and the hornwort Anthoceros agrestis-consistently resulted in a shortage of phenylpropanoids and abnormal plant development. The latter could be rescued in the moss by exogenous supply of p-coumaric acid, the product of C4H. Our findings establish the emergence of the CYP73 gene family as a foundational event in the development of the plant phenylpropanoid pathway, and underscore the deep-rooted function of the C4H enzyme in embryophyte biology., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
25. Cutin-derived oligomers induce hallmark plant immune responses.
- Author
-
Moreira CJS, Escórcio R, Bento A, Bjornson M, Herold L, Tomé AS, Martins C, Fanuel M, Martins I, Bakan B, Zipfel C, and Silva Pereira C
- Subjects
- Plant Immunity, Arabidopsis immunology, Membrane Lipids metabolism
- Abstract
The cuticle constitutes the outermost defensive barrier of most land plants. It comprises a polymeric matrix-cutin, surrounded by soluble waxes. Moreover, the cuticle constitutes the first line of defense against pathogen invasion, while also protecting the plant from many abiotic stresses. Aliphatic monomers in cutin have been suggested to act as immune elicitors in plants. This study analyses the potential of cutin oligomers to activate rapid signaling outputs reminiscent of pattern-triggered immunity in the model plant Arabidopsis. Cutin oligomeric mixtures led to Ca2+ influx and mitogen-activated protein kinase activation. Comparable responses were measured for cutin, which was also able to induce a reactive oxygen species burst. Furthermore, cutin oligomer treatment resulted in a unique transcriptional reprogramming profile, having many archetypal features of pattern-triggered immunity. Targeted spectroscopic and spectrometric analyses of the cutin oligomers suggest that the elicitor compounds consist mostly of two up to three 10,16-dihydroxyhexadecanoic acid monomers linked together through ester bonds. This study demonstrates that cutin breakdown products can act as inducers of early plant immune responses. Further investigation is needed to understand how cutin breakdowns are perceived and to explore their potential use in agriculture., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
- Published
- 2024
- Full Text
- View/download PDF
26. Receptor mediated targeting of EGF-conjugated alginate-PAMAM nanoparticles to lung adenocarcinoma: 2D/3D in vitro and in vivo evaluation.
- Author
-
Ilhan-Ayisigi E, Saglam-Metiner P, Sanci E, Bakan B, Yildirim Y, Buhur A, Yavasoglu A, Yavasoglu NUK, and Yesil-Celiktas O
- Subjects
- Female, Animals, Epidermal Growth Factor metabolism, Carboplatin, Alginates, Cell Line, Tumor, Drug Delivery Systems, Dendrimers, Nanoparticles, Antineoplastic Agents pharmacology, Antineoplastic Agents therapeutic use, Adenocarcinoma of Lung drug therapy, Lung Neoplasms drug therapy
- Abstract
Carboplatin (cis-diamine (1,1-cyclobutandicarboxylaso)‑platinum (II)) is a second-generation antineoplastic drug, which is widely used for chemotherapy of lung, colon, breast, cervix, testicular and digestive system cancers. Although preferred over cisplatin due to the lower incidence of nephrotoxicity and ototoxicity, efficient carboplatin delivery remains as a major challenge. In this study, carboplatin loaded alginate- poly(amidoamine) (PAMAM) hybrid nanoparticles (CAPs) with mean sizes of 192.13 ± 4.15 nm were synthesized using a microfluidic platform, then EGF was conjugated to the surface of CAPs (EGF-CAPs) for the receptor-targeted delivery. Hence, increased FITC
+ cell counts were observed in A549 spheroids after EGF-CAP treatment compared to CAP in the 3D cellular uptake study. As such, the cytotoxicity of EGF-CAP was approximately 2-fold higher with an IC50 value of 35.89 ± 10.37 μg/mL compared to the CAPs in A549 spheroids. Based on in vivo experimental animal model, anti-tumor activities of the group treated with CAP decreased by 61 %, whereas the group treated with EGF-CAP completely recovered. Additionally, EGF-CAP application was shown to induce apoptotic cell death. Our study provided a new strategy for designing a hybrid nanoparticle for EGFR targeted carboplatin delivery with improved efficacy both in vitro and in vivo applications., Competing Interests: Declaration of competing interest On behalf of all authors, the corresponding author states that there is no conflict of interest., (Copyright © 2024. Published by Elsevier B.V.)- Published
- 2024
- Full Text
- View/download PDF
27. Formulated hydroxy fatty acids from fruit pomaces reduce apple scab development caused by Venturia inaequalis through a dual mode of action.
- Author
-
Gaucher M, Juillard A, Nguyen BH, Viller N, Ernenwein C, Marion D, Brisset MN, and Bakan B
- Abstract
The outermost hydrophobic layer of plants, i.e. the cuticle, is mainly composed of cutin, a polyester of hydroxy fatty acids with reported eliciting and/or antimicrobial activities for some of them. By-products of the fruit processing industry (fruit pomaces), often strongly enriched in cuticular material, are therefore a potential source of bioactive compounds for crop protection against pathogen attack. We investigated the utilization of tomato and apple pomaces in the development of a cutin-based biocontrol solution against apple scab, a major apple disease caused by Venturia inaequalis . Several cutin monomer extracts obtained through different strategies of depolymerization and purification were first compared for their ability to induce a targeted set of defense genes in apple seedlings after foliar application. After a step of formulation, some extracts were chosen for further investigation in planta and in vitro . Our results show that formulated cutin monomers could trigger a significant transcriptome reprogramming in apple plants and exhibit an antifungal effect on V. inaequalis . Cutin monomers-treated apple seedlings were significantly protected against infection by the apple scab agent. Altogether, our findings suggest that water-dispersed cutin monomers extracted from pomaces are potential new bio-based solutions for the control of apple scab., Competing Interests: Author CE was employed by SDP Rovensa Company. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Gaucher, Juillard, Nguyen, Viller, Ernenwein, Marion, Brisset and Bakan.)
- Published
- 2024
- Full Text
- View/download PDF
28. Impact of a Polymer-Based Nanoparticle with Formoterol Drug as Nanocarrier System In Vitro and in an Experimental Asthmatic Model.
- Author
-
Bakan B, Jonckheere AC, Decaesteker T, Marain NF, Murugadoss S, Karabay Yavasoglu NU, Şahar U, Şenay RH, Akgöl S, Göksel Ö, Hoet PHM, and Vanoirbeek JAJ
- Abstract
The implementation of nanotechnology in pulmonary delivery systems might result in better and more specific therapy. Therefore, a nano-sized drug carrier should be toxicologically inert and not induce adverse effects. We aimed to investigate the responses of a polymer nano drug carrier, a lysine poly-hydroxyethyl methacrylate nanoparticle (NP) [Lys-p(HEMA)], loaded with formoterol, both in vitro and in vivo in an ovalbumin (OVA) asthma model. The successfully synthesized nanodrug formulation showed an expectedly steady in vitro release profile. There was no sign of in vitro toxicity, and the 16HBE and THP-1 cell lines remained vital after exposure to the nanocarrier, both loaded and unloaded. In an experimental asthma model (Balb/c mice) of ovalbumin sensitization and challenge, the nanocarrier loaded and unloaded with formoterol was tested in a preventive strategy and compared to treatment with the drug in a normal formulation. The airway hyperresponsiveness (AHR) and pulmonary inflammation in the bronchoalveolar lavage (BAL), both cellular and biochemical, were assessed. The application of formoterol as a regular drug and the unloaded and formoterol-loaded NP in OVA-sensitized mice followed by a saline challenge was not different from the control group. Yet, both the NP formulation and the normal drug application led to a more deteriorated lung function and increased lung inflammation in the OVA-sensitized and -challenged mice, showing that the use of the p(HEMA) nanocarrier loaded with formoterol needs more extensive testing before it can be applied in clinical settings.
- Published
- 2023
- Full Text
- View/download PDF
29. Cuticle architecture and mechanical properties: a functional relationship delineated through correlated multimodal imaging.
- Author
-
Reynoud N, Geneix N, D'Orlando A, Petit J, Mathurin J, Deniset-Besseau A, Marion D, Rothan C, Lahaye M, and Bakan B
- Subjects
- Multimodal Imaging, Fruit
- Abstract
Cuticles are multifunctional hydrophobic biocomposites that protect the aerial organs of plants. During plant development, plant cuticles must accommodate different mechanical constraints combining extensibility and stiffness, and the corresponding relationships with their architecture are unknown. Recent data showed a fine-tuning of cuticle architecture during fruit development, with several chemical clusters which raise the question of how they impact the mechanical properties of cuticles. We investigated the in-depth nanomechanical properties of tomato (Solanum lycopersicum) fruit cuticle from early development to ripening, in relation to chemical and structural heterogeneities by developing a correlative multimodal imaging approach. Unprecedented sharps heterogeneities were evidenced including an in-depth mechanical gradient and a 'soft' central furrow that were maintained throughout the plant development despite the overall increase in elastic modulus. In addition, we demonstrated that these local mechanical areas are correlated to chemical and structural gradients. This study shed light on fine-tuning of mechanical properties of cuticles through the modulation of their architecture, providing new insight for our understanding of structure-function relationships of plant cuticles and for the design of bioinspired material., (© 2023 The Authors New Phytologist © 2023 New Phytologist Foundation.)
- Published
- 2023
- Full Text
- View/download PDF
30. The cutin polymer matrix undergoes a fine architectural tuning from early tomato fruit development to ripening.
- Author
-
Reynoud N, Geneix N, Petit J, D'Orlando A, Fanuel M, Marion D, Rothan C, Lahaye M, and Bakan B
- Subjects
- Fruit, Polymers, Polysaccharides analysis, Phenols, Plant Epidermis, Solanum lycopersicum
- Abstract
The cuticle is a complex polymer matrix that protects all aerial organs of plants, fulfills multiple roles in plant-environment interactions, and is critical for plant development. These functions are associated with the structural features of cuticles, and the architectural modeling of cuticles during plant development is crucial for understanding their physical properties and biological functions. In this work, the in-depth architecture of the cutin polymer matrix during fruit development was investigated. Using cherry tomato fruit (Solanum lycopersicum) as a model from the beginning of the cell expansion phase to the red ripe stage, we designed an experimental scheme combining sample pretreatment, Raman mapping, multivariate data analyses, and biochemical analyses. These approaches revealed clear chemical areas with different contributions of cutin, polysaccharides, and phenolics within the cutin polymer matrix. Besides, we demonstrated that these areas are finely tuned during fruit development, including compositional and macromolecular rearrangements. The specific spatiotemporal accumulation of phenolic compounds (p-coumaric acid and flavonoids) suggests that they fulfill distinct functions during fruit development. In addition, we highlighted an unexpected dynamic remodeling of the cutin-embedded polysaccharides pectin, cellulose, and hemicellulose. Such structural tuning enables consistent adaption of the cutin-polysaccharide continuum and the functional performance of the fruit cuticle at the different developmental stages. This study provides insights into the plant cuticle architecture and in particular into the organization of the epidermal cell wall-cuticle., (© American Society of Plant Biologists 2022. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2022
- Full Text
- View/download PDF
31. Finding a Needle in a Haystack: Producing Antimicrobial Cutin-Derived Oligomers from Tomato Pomace.
- Author
-
Escórcio R, Bento A, Tomé AS, Correia VG, Rodrigues R, Moreira CJS, Marion D, Bakan B, and Silva Pereira C
- Abstract
Agro-industrial residues comprise a rich diversity of plant polymers and bioactive compounds, constituting promising sources for the development of materials, including bioplastics, and food supplements, among other applications. In particular, the polyester cutin is abundant in fruit peel, a plentiful constituent of pomace agro-industrial residues. The potential of diverse fruit pomaces as a source for the development of cutin-derived materials/products has been extensively sought out. This study expands the established knowledge: it sets proof of concept for the production of antimicrobial oligomers from cutin-rich materials isolated in a single step from tomato pomaces generated by two remote agro-industries. Specifically, it first analyzed how the chemical signature (nuclear magnetic resonance (NMR) and gas chromatography-mass spectrometry (GC-MS)) of a pomace (and of its major constituents) mirrors that of the corresponding cutin-rich material isolated using an ionic liquid extractant. The cutin-rich materials were then deconstructed (using mild hydrolyses), and the resultant mixtures were chemically characterized and screened for bactericidal activity against Escherichia coli and Staphylococcus aureus . The presence of esterified structures, linear and/or branched, likely comprising dioic acids as a major building block (but not exclusively) is a prerequisite for activity against E. coli but not against S. aureus that was susceptible to monomers as well. Further studies are required to optimize the production of broad bactericidal oligomers from any cutin-rich pomace source, moving ahead toward their circular usage., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)
- Published
- 2022
- Full Text
- View/download PDF
32. The SlSHN2 transcription factor contributes to cuticle formation and epidermal patterning in tomato fruit.
- Author
-
Bres C, Petit J, Reynoud N, Brocard L, Marion D, Lahaye M, Bakan B, and Rothan C
- Abstract
Tomato (Solanum lycopersicum) is an established model for studying plant cuticle because of its thick cuticle covering and embedding the epidermal cells of the fruit. In this study, we screened an EMS mutant collection of the miniature tomato cultivar Micro-Tom for fruit cracking mutants and found a mutant displaying a glossy fruit phenotype. By using an established mapping-by-sequencing strategy, we identified the causal mutation in the SlSHN2 transcription factor that is specifically expressed in outer epidermis of growing fruit. The point mutation in the shn2 mutant introduces a K to N amino acid change in the highly conserved 'mm' domain of SHN proteins. The cuticle from shn2 fruit showed a ~ fivefold reduction in cutin while abundance and composition of waxes were barely affected. In addition to alterations in cuticle thickness and properties, epidermal patterning and polysaccharide composition of the cuticle were changed. RNAseq analysis further highlighted the altered expression of hundreds of genes in the fruit exocarp of shn2, including genes associated with cuticle and cell wall formation, hormone signaling and response, and transcriptional regulation. In conclusion, we showed that a point mutation in the transcriptional regulator SlSHN2 causes major changes in fruit cuticle formation and its coordination with epidermal patterning., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
33. The Complex Architecture of Plant Cuticles and Its Relation to Multiple Biological Functions.
- Author
-
Reynoud N, Petit J, Bres C, Lahaye M, Rothan C, Marion D, and Bakan B
- Abstract
Terrestrialization of vascular plants, i.e., Angiosperm, is associated with the development of cuticular barriers that prevent biotic and abiotic stresses and support plant growth and development. To fulfill these multiple functions, cuticles have developed a unique supramolecular and dynamic assembly of molecules and macromolecules. Plant cuticles are not only an assembly of lipid compounds, i.e., waxes and cutin polyester, as generally presented in the literature, but also of polysaccharides and phenolic compounds, each fulfilling a role dependent on the presence of the others. This mini-review is focused on recent developments and hypotheses on cuticle architecture-function relationships through the prism of non-lipid components, i.e., cuticle-embedded polysaccharides and polyester-bound phenolics., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Reynoud, Petit, Bres, Lahaye, Rothan, Marion and Bakan.)
- Published
- 2021
- Full Text
- View/download PDF
34. Unraveling Cuticle Formation, Structure, and Properties by Using Tomato Genetic Diversity.
- Author
-
Petit J, Bres C, Reynoud N, Lahaye M, Marion D, Bakan B, and Rothan C
- Abstract
The tomato ( Solanum lycopersicum ) fruit has a thick, astomatous cuticle that has become a model for the study of cuticle formation, structure, and properties in plants. Tomato is also a major horticultural crop and a long-standing model for research in genetics, fruit development, and disease resistance. As a result, a wealth of genetic resources and genomic tools have been established, including collections of natural and artificially induced genetic diversity, introgression lines of genome fragments from wild relatives, high-quality genome sequences, phenotype and gene expression databases, and efficient methods for genetic transformation and editing of target genes. This mini-review reports the considerable progresses made in recent years in our understanding of cuticle by using and generating genetic diversity for cuticle-associated traits in tomato. These include the synthesis of the main cuticle components (cutin and waxes), their role in the structure and properties of the cuticle, their interaction with other cell wall polymers as well as the regulation of cuticle formation. It also addresses the opportunities offered by the untapped germplasm diversity available in tomato and the current strategies available to exploit them., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2021 Petit, Bres, Reynoud, Lahaye, Marion, Bakan and Rothan.)
- Published
- 2021
- Full Text
- View/download PDF
35. Quantification of Structure-Property Relationships for Plant Polyesters Reveals Suberin and Cutin Idiosyncrasies.
- Author
-
Bento A, Moreira CJS, Correia VG, Escórcio R, Rodrigues R, Tomé AS, Geneix N, Petit J, Bakan B, Rothan C, Mykhaylyk OO, and Silva Pereira C
- Abstract
Polyesters, as they exist in planta , are promising materials with which to begin the development of "green" replacements. Cutin and suberin, polyesters found ubiquitously in plants, are prime candidates. Samples enriched for plant polyesters, and in which their native backbones were largely preserved, were studied to identify "natural" structural features; features that influence critical physical properties. Quantitative nuclear magnetic resonance (NMR), differential scanning calorimetry (DSC), and X-ray scattering methods were used to quantify structure-property relationships in these polymeric materials. The degree of esterification, namely, the presence of acylglycerol linkages in suberin and of secondary esters in cutin, and the existence of mid-chain epoxide groups defining the packing of the aliphatic chains were observed. This packing determines polymer crystallinity, the resulting crystal structure, and the melting temperature. To evaluate the strength of this rule, tomato cutin from the same genotype, studying wild-type plants and two well-characterized mutants, was analyzed. The results show that cutin's material properties are influenced by the amount of unbound aliphatic hydroxyl groups and by the length of the aliphatic chain. Collectively, the acquired data can be used as a tool to guide the selection of plant polyesters with precise structural features, and hence physicochemical properties., Competing Interests: The authors declare no competing financial interest., (© 2021 The Authors. Published by American Chemical Society.)
- Published
- 2021
- Full Text
- View/download PDF
36. ABCG transporters export cutin precursors for the formation of the plant cuticle.
- Author
-
Elejalde-Palmett C, Martinez San Segundo I, Garroum I, Charrier L, De Bellis D, Mucciolo A, Guerault A, Liu J, Zeisler-Diehl V, Aharoni A, Schreiber L, Bakan B, Clausen MH, Geisler M, and Nawrath C
- Subjects
- Arabidopsis genetics, Arabidopsis metabolism, Arabidopsis Proteins, Gene Expression Regulation, Plant, Membrane Lipids, Plant Leaves metabolism, Nicotiana metabolism, ATP Binding Cassette Transporter, Subfamily G genetics, ATP Binding Cassette Transporter, Subfamily G metabolism, Solanum lycopersicum genetics, Solanum lycopersicum metabolism, Plant Epidermis, Plant Proteins genetics, Plant Proteins metabolism
- Abstract
The plant cuticle is deposited on the surface of primary plant organs, such as leaves, fruits, and floral organs, forming a diffusion barrier and protecting the plant against various abiotic and biotic stresses. Cutin, the structural polyester of the plant cuticle, is synthesized in the apoplast. Plasma-membrane-localized ATP-binding cassette (ABC) transporters of the G family have been hypothesized to export cutin precursors. Here, we characterize SlABCG42 of tomato representing an ortholog of AtABCG32 in Arabidopsis. SlABCG42 expression in Arabidopsis complements the cuticular deficiencies of the Arabidopsis pec1/abcg32 mutant. RNAi-dependent downregulation of both tomato genes encoding proteins highly homologous to AtABCG32 (SlABCG36 and SlABCG42) leads to reduced cutin deposition and formation of a thinner cuticle in tomato fruits. By using a tobacco (Nicotiana benthamiana) protoplast system, we show that AtABCG32 and SlABCG42 have an export activity for 10,16-dihydroxy hexadecanoyl-2-glycerol, a cutin precursor in vivo. Interestingly, also free ω-hydroxy hexadecanoic acid as well as hexadecanedioic acid were exported, furthering the research on the identification of cutin precursors in vivo and the respective mechanisms of their integration into the cutin polymer., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
37. Acute and chronic exposure to air pollution in relation with incidence, prevalence, severity and mortality of COVID-19: a rapid systematic review.
- Author
-
Katoto PDMC, Brand AS, Bakan B, Obadia PM, Kuhangana C, Kayembe-Kitenge T, Kitenge JP, Nkulu CBL, Vanoirbeek J, Nawrot TS, Hoet P, and Nemery B
- Subjects
- Humans, Incidence, Nitrogen Dioxide adverse effects, Ozone adverse effects, Particulate Matter adverse effects, Prevalence, Prognosis, Sulfur Dioxide adverse effects, Air Pollutants adverse effects, Air Pollution adverse effects, COVID-19 epidemiology, COVID-19 mortality, Environmental Exposure adverse effects
- Abstract
Background: Air pollution is one of the world's leading mortality risk factors contributing to seven million deaths annually. COVID-19 pandemic has claimed about one million deaths in less than a year. However, it is unclear whether exposure to acute and chronic air pollution influences the COVID-19 epidemiologic curve., Methods: We searched for relevant studies listed in six electronic databases between December 2019 and September 2020. We applied no language or publication status limits. Studies presented as original articles, studies that assessed risk, incidence, prevalence, or lethality of COVID-19 in relation with exposure to either short-term or long-term exposure to ambient air pollution were included. All patients regardless of age, sex and location diagnosed as having COVID-19 of any severity were taken into consideration. We synthesised results using harvest plots based on effect direction., Results: Included studies were cross-sectional (n = 10), retrospective cohorts (n = 9), ecological (n = 6 of which two were time-series) and hypothesis (n = 1). Of these studies, 52 and 48% assessed the effect of short-term and long-term pollutant exposure, respectively and one evaluated both. Pollutants mostly studied were PM
2.5 (64%), NO2 (50%), PM10 (43%) and O3 (29%) for acute effects and PM2.5 (85%), NO2 (39%) and O3 (23%) then PM10 (15%) for chronic effects. Most assessed COVID-19 outcomes were incidence and mortality rate. Acutely, pollutants independently associated with COVID-19 incidence and mortality were first PM2.5 then PM10 , NO2 and O3 (only for incident cases). Chronically, similar relationships were found for PM2.5 and NO2 . High overall risk of bias judgments (86 and 39% in short-term and long-term exposure studies, respectively) was predominantly due to a failure to adjust aggregated data for important confounders, and to a lesser extent because of a lack of comparative analysis., Conclusion: The body of evidence indicates that both acute and chronic exposure to air pollution can affect COVID-19 epidemiology. The evidence is unclear for acute exposure due to a higher level of bias in existing studies as compared to moderate evidence with chronic exposure. Public health interventions that help minimize anthropogenic pollutant source and socio-economic injustice/disparities may reduce the planetary threat posed by both COVID-19 and air pollution pandemics.- Published
- 2021
- Full Text
- View/download PDF
38. Relationships between puroindoline A-prolamin interactions and wheat grain hardness.
- Author
-
Geneix N, Dalgalarrondo M, Tassy C, Nadaud I, Barret P, Bakan B, Elmorjani K, and Marion D
- Subjects
- Crop Production, Dynamic Light Scattering, Edible Grain chemistry, Gliadin chemistry, Hydrogen-Ion Concentration, Nephelometry and Turbidimetry, Particle Size, Plant Proteins chemistry, Protein Aggregates physiology, Protein Binding physiology, Protein Domains physiology, Repetitive Sequences, Amino Acid physiology, Starch chemistry, Starch metabolism, Surface Plasmon Resonance, Triticum chemistry, Edible Grain metabolism, Gliadin metabolism, Hardness physiology, Plant Proteins metabolism, Triticum metabolism
- Abstract
Grain hardness is an important quality trait of cereal crops. In wheat, it is mainly determined by the Hardness locus that harbors genes encoding puroindoline A (PINA) and puroindoline B (PINB). Any deletion or mutation of these genes leading to the absence of PINA or to single amino acid changes in PINB leads to hard endosperms. Although it is generally acknowledged that hardness is controlled by adhesion strength between the protein matrix and starch granules, the physicochemical mechanisms connecting puroindolines and the starch-protein interactions are unknown as of this time. To explore these mechanisms, we focused on PINA. The overexpression in a hard wheat cultivar (cv. Courtot with the Pina-D1a and Pinb-D1d alleles) decreased grain hardness in a dose-related effect, suggesting an interactive process. When PINA was added to gliadins in solution, large aggregates of up to 13 μm in diameter were formed. Turbidimetry measurements showed that the PINA-gliadin interaction displayed a high cooperativity that increased with a decrease in pH from neutral to acid (pH 4) media, mimicking the pH change during endosperm development. No turbidity was observed in the presence of isolated α- and γ-gliadins, but non-cooperative interactions of PINA with these proteins could be confirmed by surface plasmon resonance. A significant higher interaction of PINA with γ-gliadins than with α-gliadins was observed. Similar binding behavior was observed with a recombinant repeated polypeptide that mimics the repeat domain of gliadins, i.e., (Pro-Gln-Gln-Pro-Tyr)8. Taken together, these results suggest that the interaction of PINA with a monomeric gliadin creates a nucleation point leading to the aggregation of other gliadins, a phenomenon that could prevent further interaction of the storage prolamins with starch granules. Consequently, the role of puroindoline-prolamin interactions on grain hardness should be addressed on the basis of previous observations that highlight the similar subcellular routing of storage prolamins and puroindolines., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2020
- Full Text
- View/download PDF
39. Assembly of tomato fruit cuticles: a cross-talk between the cutin polyester and cell wall polysaccharides.
- Author
-
Philippe G, Geneix N, Petit J, Guillon F, Sandt C, Rothan C, Lahaye M, Marion D, and Bakan B
- Subjects
- Cell Wall, Fruit, Membrane Lipids, Polyesters, Polysaccharides, Solanum lycopersicum
- Abstract
The cuticle is an essential and ubiquitous biological polymer composite covering aerial plant organs, whose structural component is the cutin polyester entangled with cell wall polysaccharides. The nature of the cutin-embedded polysaccharides (CEPs) and their association with cutin polyester are still unresolved Using tomato fruit as a model, chemical and enzymatic pretreatments combined with biochemical and biophysical methods were developed to compare the fine structure of CEPs with that of the noncutinized polysaccharides (NCPs). In addition, we used tomato fruits from cutin-deficient transgenic lines cus1 (cutin synthase 1) to study the impact of cutin polymerization on the fine structure of CEPs. Cutin-embedded polysaccharides exhibit specific structural features including a high degree of esterification (i.e. methylation and acetylation), a low ramification of rhamnogalacturonan (RGI), and a high crystallinity of cellulose. In addition to decreasing cutin deposition and polymerization, cus1 silencing induced a specific modification of CEPs, especially on pectin content, while NCPs were not affected. This new evidence of the structural specificities of CEPs and of the cross-talk between cutin polymerization and polysaccharides provides new hypotheses concerning the formation of these complex lipopolysaccharide edifices., (© 2020 The Authors. New Phytologist © 2020 New Phytologist Trust.)
- Published
- 2020
- Full Text
- View/download PDF
40. Synthesis, characterization and toxicity assessment of a new polymeric nanoparticle, l-glutamic acid-g-p(HEMA).
- Author
-
Bakan B, Gülcemal S, Akgöl S, Hoet PHM, and Karabay Yavaşoğlu NÜ
- Subjects
- Animals, Biocompatible Materials chemistry, Biocompatible Materials toxicity, Cell Line, Chickens, Drug Delivery Systems methods, Emulsions chemistry, Emulsions pharmacology, Emulsions toxicity, Erythrocytes drug effects, Humans, Monocytes drug effects, Particle Size, Rabbits, Salmonella typhimurium drug effects, Surface Properties drug effects, Surface-Active Agents chemistry, Methacrylates chemistry, Methacrylates toxicity, Nanoparticles chemistry, Nanoparticles toxicity, Polymers chemistry, Polymers toxicity
- Abstract
The toxic effects of poly(HEMA)-based polymeric nanoparticles must be analyzed before their biomedical applications as drug delivery systems. The aim of the study was to characterize and evaluate the toxicity for its biocompatibility of a newly synthesized l-glutamic acid-g-p(HEMA) polymeric nanoparticle The nanoparticle was synthesized with surfactant-free emulsion polymerization and grafting techniques. Grafting efficiency was estimated at 58%. The nanoparticle shape was verified as nearly spherical by scanning electron microscopy. Atomic force microscopy images showed a rough surface topography. The nanoparticle had an average size of ~194.6 nm on zeta analysis, and the zeta potential value was -18 mV. Fourier transformed infrared spectroscopy revealed spectra from 750 to 4000 cm
-1 and characteristic peaks of stretching bands. The swelling ratio was 46%. With 24-h exposure, p(HEMA) and l-glutamic acid-g-p(HEMA) did not have cytotoxic effects on a human bronchial epithelial cell line (16HBE) and human monocyte cell line by water-soluble tetrazolium salt 1 (WST-1) assay and lactate dehydrogenase assay (LDH). It did not show genotoxic potential by comet assay and did not have mutagenic effects on Salmonella typhimurium TA98, TA100, TA1535 and TA1537 strains by Ames test. The nanoparticle at 160 μg/ml showed 2% hemolytic activity on erythrocytes. On cell migration assay, the percentage closure difference between exposed and control cells was estimated at 21%. We found no irritation effect on Hen's egg test-chorioallantoic membrane test. We determined that the polymeric nanoparticle l-glutamic acid-g-p(HEMA) was biocompatible and has potential for use in a drug delivery system., Competing Interests: Declaration of competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2020
- Full Text
- View/download PDF
41. The Spatiotemporal Deposition of Lysophosphatidylcholine Within Starch Granules of Maize Endosperm and its Relationships to the Expression of Genes Involved in Endoplasmic Reticulum-Amyloplast Lipid Trafficking and Galactolipid Synthesis.
- Author
-
Gayral M, Fanuel M, Rogniaux H, Dalgalarrondo M, Elmorjani K, Bakan B, and Marion D
- Subjects
- Biological Transport, Chloroplasts metabolism, Galactolipids chemistry, Models, Biological, Palmitic Acid chemistry, Palmitic Acid metabolism, Endoplasmic Reticulum metabolism, Endosperm metabolism, Galactolipids biosynthesis, Gene Expression Regulation, Plant, Lysophosphatidylcholines metabolism, Plastids metabolism, Starch metabolism, Zea mays metabolism
- Abstract
The presence of lipids within starch granules is specific to cereal endosperm starches. These starch lipids are composed of lysophospholipids, especially lysophosphatidylcholine (LysoPC) and free fatty acids that strongly impact the assembly and properties of cereal starches. However, the molecular mechanisms associated with this specific lipid routing have never been investigated. In this study, matrix-assisted laser desorption ionization mass spectrometry imaging revealed decreasing gradients in starch LysoPC concentrations from the periphery to the center of developing maize endosperms. This spatiotemporal deposition of starch LysoPC was similar to that previously observed for endoplasmic reticulum (ER)-synthesized storage proteins, i.e. zeins, suggesting that LysoPC might originate in the ER, as already reported for chloroplasts. Furthermore, a decrease of the palmitate concentration of amyloplast galactolipids was observed during endosperm development, correlated with the preferential trapping of palmitoyl-LysoPC by starch carbohydrates, suggesting a link between LysoPC and galactolipid synthesis. Using microarray, the homologous genes of the Arabidopsis ER-chloroplast lipid trafficking and galactolipid synthesis pathways were also expressed in maize endosperm. These strong similarities suggest that the encoded enzymes and transporters are adapted to managing the differences between chloroplast and amyloplast lipid homeostasis. Altogether, our results led us to propose a model where ER-amyloplast lipid trafficking directs the LysoPC towards one of two routes, the first towards the stroma and starch granules and the other towards galactolipid synthesis.
- Published
- 2019
- Full Text
- View/download PDF
42. Ferulate and lignin cross-links increase in cell walls of wheat grain outer layers during late development.
- Author
-
Chateigner-Boutin AL, Lapierre C, Alvarado C, Yoshinaga A, Barron C, Bouchet B, Bakan B, Saulnier L, Devaux MF, Girousse C, and Guillon F
- Subjects
- Cell Wall chemistry, Edible Grain chemistry, Edible Grain growth & development, Hydrolysis, Phenols chemistry, Triticum chemistry, Triticum cytology, Coumaric Acids chemistry, Lignin chemistry, Triticum growth & development
- Abstract
Important biological, nutritional and technological roles are attributed to cell wall polymers from cereal grains. The composition of cell walls in dry wheat grain has been well studied, however less is known about cell wall deposition and modification in the grain outer layers during grain development. In this study, the composition of cell walls in the outer layers of the wheat grain (Triticum aestivum Recital cultivar) was investigated during grain development, with a focus on cell wall phenolics. We discovered that lignification of outer layers begins earlier than previously reported and long before the grain reaches its final size. Cell wall feruloylation increased in development. However, in the late stages, the amount of ferulate releasable by mild alkaline hydrolysis was reduced as well as the yield of lignin-derived thioacidolysis monomers. These reductions indicate that new ferulate-mediated cross-linkages of cell wall polymers appeared as well as new resistant interunit bonds in lignins. The formation of these additional linkages more specifically occurred in the outer pericarp. Our results raised the possibility that stiffening of cell walls occur at late development stages in the outer pericarp and might contribute to the restriction of the grain radial growth., (Copyright © 2018 The Authors. Published by Elsevier B.V. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
43. Deciphering the biochemical similarities and differences among mouse embryonic stem cells, somatic and cancer cells using ATR-FTIR spectroscopy.
- Author
-
Güler G, Acikgoz E, Karabay Yavasoglu NÜ, Bakan B, Goormaghtigh E, and Aktug H
- Subjects
- Animals, Cell Proliferation, Mice, Cell Line, Tumor cytology, Fibroblasts cytology, Lipids analysis, Mouse Embryonic Stem Cells cytology, Spectroscopy, Fourier Transform Infrared
- Abstract
Cellular macromolecules play important roles in cellular behaviors and biological processes. In the current work, cancer (KLN205), normal (MSFs) and mouse embryonic stem cells (mESCs) are compared using ATR-FTIR spectroscopy. Modifications in the composition, concentration, structure and function-related changes in the cellular components were deciphered using the infrared spectra. Our results revealed that cancer and embryonic stem cells are very similar but highly different from the normal cells based on the spectral variations in the protein, lipid, carbohydrate and nucleic acid components. The longest lipid acyl chains exist in mESCs, while cancer cells harbor the lowest lipid amount, short lipid acyl chains, a high content of branched fatty acids and thin cell membranes. The highest cellular growth rate and accelerated cell divisions were observed in the cancer cells. However, the normal cells harbor low nucleic acid and glycogen amounts but have a higher lipid composition. Any defect in the signaling pathways and/or biosynthesis of these cellular parameters during the embryonic-to-somatic cell transition may lead to physiological and molecular events that promote cancer initiation, progression and drug resistance. We conclude that an improved understanding of both similarities and differences in the cellular mechanisms among the cancer, normal and mESCs is crucial to develop a potential clinical relevance, and ATR-FITR can be successfully used as a novel approach to gain new insights into the stem cell and cancer research. We suggest that targeting the cellular metabolisms (glycogen and lipid) can provide new strategies for cancer treatment.
- Published
- 2018
- Full Text
- View/download PDF
44. Assembly of the Cutin Polyester: From Cells to Extracellular Cell Walls.
- Author
-
Bakan B and Marion D
- Abstract
Cuticular matrices covering aerial plant organs or delimiting compartments in these organs are composed of an insoluble hydrophobic polymer of high molecular mass, i.e., cutin, that encompass some cell wall polysaccharides and is filled by waxes. Cutin is a polyester of hydroxy and-or epoxy fatty acids including a low amount of glycerol. Screening of Arabidopsis and more recently of tomato ( Solanum lycopersicum ) mutants allowed the delineation of the metabolic pathway involved in the formation of cutin monomers, as well as their translocation in the apoplast. Furthermore, these studies identified an extracellular enzyme involved in the polymerization of these monomers, i.e., cutin synthase 1 (CUS1), an acyl transferase of the GDSL lipase protein family. By comparing the structure of tomato fruit cutins from wild type and down-regulated CUS1 mutants, as well as with the CUS1-catalyzed formation of oligomers in vitro, hypothetical models can be elaborated on the polymerization of cutins. The polymorphism of the GDSL-lipase family raises a number of questions concerning the function of the different isoforms in relation with the formation of a composite material, the cuticle, containing entangled hydrophilic and hydrophobic polymers, i.e., polysaccharides and cutin, and plasticizers, i.e., waxes., Competing Interests: The authors declare no conflict of interest.
- Published
- 2017
- Full Text
- View/download PDF
45. Breeding for cuticle-associated traits in crop species: traits, targets, and strategies.
- Author
-
Petit J, Bres C, Mauxion JP, Bakan B, and Rothan C
- Subjects
- Biotechnology, Crops, Agricultural genetics, Fruit genetics, Phenotype, Crops, Agricultural physiology, Fruit physiology, Genetic Variation, Plant Breeding methods, Plant Epidermis physiology
- Abstract
Improving crop productivity and quality while promoting sustainable agriculture have become major goals in plant breeding. The cuticle is a natural film covering the aerial organs of plants and consists of lipid polyesters covered and embedded with wax. The cuticle protects plants against water loss and pathogens and affects traits with strong impacts on crop quality such as, for horticultural crops, fruit brightness, cracking, russeting, netting, and shelf life. Here we provide an overview of the most important cuticle-associated traits that can be targeted for crop improvement. To date, most studies on cuticle-associated traits aimed at crop breeding have been done on fleshy fruits. Less information is available for staple crops such as rice, wheat or maize. Here we present new insights into cuticle formation and properties resulting from the study of genetic resources available for the various crop species. Our review also covers the current strategies and tools aimed at exploiting available natural and artificially induced genetic diversity and the technologies used to transfer the beneficial alleles affecting cuticle-associated traits to commercial varieties., (© The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2017
- Full Text
- View/download PDF
46. Responses to Hypoxia and Endoplasmic Reticulum Stress Discriminate the Development of Vitreous and Floury Endosperms of Conventional Maize ( Zea mays ) Inbred Lines.
- Author
-
Gayral M, Elmorjani K, Dalgalarrondo M, Balzergue SM, Pateyron S, Morel MH, Brunet S, Linossier L, Delluc C, Bakan B, and Marion D
- Abstract
Major nutritional and agronomical issues relating to maize ( Zea mays ) grains depend on the vitreousness/hardness of its endosperm. To identify the corresponding molecular and cellular mechanisms, most studies have been conducted on opaque/floury mutants, and recently on Quality Protein Maize, a reversion of an opaque2 mutation by modifier genes. These mutant lines are far from conventional maize crops. Therefore, a dent and a flint inbred line were chosen for analysis of the transcriptome, amino acid, and sugar metabolites of developing central and peripheral endosperm that is, the forthcoming floury and vitreous regions of mature seeds, respectively. The results suggested that the formation of endosperm vitreousness is clearly associated with significant differences in the responses of the endosperm to hypoxia and endoplasmic reticulum stress. This occurs through a coordinated regulation of energy metabolism and storage protein (i.e., zein) biosynthesis during the grain-filling period. Indeed, genes involved in the glycolysis and tricarboxylic acid cycle are up-regulated in the periphery, while genes involved in alanine, sorbitol, and fermentative metabolisms are up-regulated in the endosperm center. This spatial metabolic regulation allows the production of ATP needed for the significant zein synthesis that occurs at the endosperm periphery; this finding agrees with the zein-decreasing gradient previously observed from the sub-aleurone layer to the endosperm center. The massive synthesis of proteins transiting through endoplasmic reticulum elicits the unfolded protein responses, as indicated by the splicing of bZip60 transcription factor. This splicing is relatively higher at the center of the endosperm than at its periphery. The biological responses associated with this developmental stress, which control the starch/protein balance, leading ultimately to the formation of the vitreous and floury regions of mature endosperm, are discussed.
- Published
- 2017
- Full Text
- View/download PDF
47. Ester Cross-Link Profiling of the Cutin Polymer of Wild-Type and Cutin Synthase Tomato Mutants Highlights Different Mechanisms of Polymerization.
- Author
-
Philippe G, Gaillard C, Petit J, Geneix N, Dalgalarrondo M, Bres C, Mauxion JP, Franke R, Rothan C, Schreiber L, Marion D, and Bakan B
- Subjects
- Esterification, Esters chemistry, Ethyl Methanesulfonate metabolism, Fatty Acids chemistry, Fruit enzymology, Fruit genetics, Glycerol chemistry, Lipase genetics, Solanum lycopersicum genetics, Membrane Lipids metabolism, Mutation, Plant Proteins genetics, Plant Proteins metabolism, Polyesters chemistry, Polymerization, Polymers chemistry, Lipase metabolism, Solanum lycopersicum enzymology, Membrane Lipids chemistry
- Abstract
Cuticle function is closely related to the structure of the cutin polymer. However, the structure and formation of this hydrophobic polyester of glycerol and hydroxy/epoxy fatty acids has not been fully resolved. An apoplastic GDSL-lipase known as CUTIN SYNTHASE1 (CUS1) is required for cutin deposition in tomato (Solanum lycopersicum) fruit exocarp. In vitro, CUS1 catalyzes the self-transesterification of 2-monoacylglycerol of 9(10),16-dihydroxyhexadecanoic acid, the major tomato cutin monomer. This reaction releases glycerol and leads to the formation of oligomers with the secondary hydroxyl group remaining nonesterified. To check this mechanism in planta, a benzyl etherification of nonesterified hydroxyl groups of glycerol and hydroxy fatty acids was performed within cutin. Remarkably, in addition to a significant decrease in cutin deposition, mid-chain hydroxyl esterification of the dihydroxyhexadecanoic acid was affected in tomato RNA interference and ethyl methanesulfonate-cus1 mutants. Furthermore, in these mutants, the esterification of both sn-1,3 and sn-2 positions of glycerol was impacted, and their cutin contained a higher molar glycerol-to-dihydroxyhexadecanoic acid ratio. Therefore, in planta, CUS1 can catalyze the esterification of both primary and secondary alcohol groups of cutin monomers, and another enzymatic or nonenzymatic mechanism of polymerization may coexist with CUS1-catalyzed polymerization. This mechanism is poorly efficient with secondary alcohol groups and produces polyesters with lower molecular size. Confocal Raman imaging of benzyl etherified cutins showed that the polymerization is heterogenous at the fruit surface. Finally, by comparing tomato mutants either affected or not in cutin polymerization, we concluded that the level of cutin cross-linking had no significant impact on water permeance., (© 2016 American Society of Plant Biologists. All Rights Reserved.)
- Published
- 2016
- Full Text
- View/download PDF
48. Assessing community assembly along a successional gradient in the North Adriatic Karst with functional and phylogenetic distances.
- Author
-
Batalha MA, Pipenbaher N, Bakan B, Kaligarič M, and Škornik S
- Subjects
- Biological Evolution, Ecology, Ecosystem, Slovenia, Soil, Trees, Forests, Grassland, Phylogeny, Plants
- Abstract
Recently, two approaches to account for ecological differences in community composition have been developed: one based on trait differences (functional diversity) and another based on evolutionary history (phylogenetic diversity). Combining them allows an integrated view of processes structuring communities. The North Adriatic Karst is covered by species-rich grasslands, but land abandonment has resulted in replacement by woodlands. This creates a successional gradient along which environmental conditions may change, and different community assembly rules may apply. We sampled 56 plant communities in the Karst and used functional-phylogenetic distances to assess assembly along a successional gradient, from grasslands to shrublands and woodlands. We found 146 species, for which we measured functional traits and built a phylogenetic tree. The three successional stages were floristically different, with grasslands having species that are typical of harsher soil conditions and woodlands with species preferring milder soil conditions. All communities had higher functional than phylogenetic distances, implying that closely related species tended to be phenotypically dissimilar. When more importance was given to functional distances, most grasslands and some shrublands were underdispersed; when more importance was given to phylogenetic distances, only one grassland was underdispersed and one woodland was overdispersed. Combining functional and phylogenetic distances provided us with better estimates of ecological differences in a successional gradient, where environmental filters seem to be the dominant force in early stages and competitive exclusion becomes more important in later stages. Taking into account that sucessional stages are assembled by different rules is essential to predicting their behaviour under future environmental scenarios.
- Published
- 2015
- Full Text
- View/download PDF
49. Lipid partitioning in maize (Zea mays L.) endosperm highlights relationships among starch lipids, amylose, and vitreousness.
- Author
-
Gayral M, Bakan B, Dalgalarrondo M, Elmorjani K, Delluc C, Brunet S, Linossier L, Morel MH, and Marion D
- Subjects
- Amylose metabolism, Carbon metabolism, Endosperm metabolism, Fatty Acids analysis, Fatty Acids chemistry, Fatty Acids, Nonesterified analysis, Lysophosphatidylcholines metabolism, Nitrogen metabolism, Starch chemistry, Amylose analysis, Endosperm chemistry, Lipids analysis, Lipids chemistry, Starch analysis, Zea mays chemistry
- Abstract
Content and composition of maize endosperm lipids and their partition in the floury and vitreous regions were determined for a set of inbred lines. Neutral lipids, i.e., triglycerides and free fatty acids, accounted for more than 80% of endosperm lipids and are almost 2 times higher in the floury than in the vitreous regions. The composition of endosperm lipids, including their fatty acid unsaturation levels, as well as their distribution may be related to metabolic specificities of the floury and vitreous regions in carbon and nitrogen storage and to the management of stress responses during endosperm cell development. Remarkably, the highest contents of starch lipids were observed systematically within the vitreous endosperm. These high amounts of starch lipids were mainly due to lysophosphatidylcholine and were tightly linked to the highest amylose content. Consequently, the formation of amylose-lysophosphatidylcholine complexes has to be considered as an outstanding mechanism affecting endosperm vitreousness.
- Published
- 2015
- Full Text
- View/download PDF
50. Matrix-assisted laser desorption/ionization mass spectrometry imaging: a powerful tool for probing the molecular topology of plant cutin polymer.
- Author
-
Veličković D, Herdier H, Philippe G, Marion D, Rogniaux H, and Bakan B
- Subjects
- Hydrolysis, Image Processing, Computer-Assisted, Lipids analysis, Lipids chemistry, Solanum lycopersicum chemistry, Malus chemistry, Membrane Lipids analysis, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization standards, Membrane Lipids chemistry, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization methods
- Abstract
The cutin polymers of different fruit cuticles (tomato, apple, nectarine) were examined using matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI MSI) after in situ release of the lipid monomers by alkaline hydrolysis. The mass spectra were acquired from each coordinate with a lateral spatial resolution of approximately 100 μm. Specific monomers were released at their original location in the tissue, suggesting that post-hydrolysis diffusion can be neglected. Relative quantification of the species was achieved by introducing an internal standard, and the collection of data was subjected to non-supervised and supervised statistical treatments. The molecular images obtained showed a specific distribution of ions that could unambiguously be ascribed to cutinized and suberized regions observed at the surface of fruit cuticles, thus demonstrating that the method is able to probe some structural changes that affect hydrophobic cuticle polymers. Subsequent chemical assignment of the differentiating ions was performed, and all of these ions could be matched to cutin and suberin molecular markers. Therefore, this MALDI-MSI procedure provides a powerful tool for probing the surface heterogeneity of plant lipid polymers. This method should facilitate rapid investigation of the relationships between cuticle phenotypes and the structure of cutin within a large population of mutants., (© 2014 The Authors The Plant Journal © 2014 John Wiley & Sons Ltd.)
- Published
- 2014
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.