11 results on '"Bakker TR"'
Search Results
2. Design and characterization of MP0250, a tri-specific anti-HGF/anti-VEGF DARPin® drug candidate.
- Author
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Binz HK, Bakker TR, Phillips DJ, Cornelius A, Zitt C, Göttler T, Sigrist G, Fiedler U, Ekawardhani S, Dolado I, Saliba JA, Tresch G, Proba K, and Stumpp MT
- Subjects
- Administration, Intravenous, Animals, Ankyrin Repeat genetics, Ankyrin Repeat immunology, Antibodies, Monoclonal administration & dosage, Antibodies, Monoclonal pharmacokinetics, Antineoplastic Agents administration & dosage, Antineoplastic Agents pharmacokinetics, Drug Design, Female, Half-Life, Hepatocyte Growth Factor antagonists & inhibitors, Hepatocyte Growth Factor genetics, Hepatocyte Growth Factor immunology, Humans, Infusions, Intravenous, Macaca fascicularis, Male, Mice, Inbred BALB C, Protein Binding immunology, Recombinant Fusion Proteins administration & dosage, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Recombinant Fusion Proteins pharmacokinetics, Serum Albumin, Human genetics, Serum Albumin, Human immunology, Vascular Endothelial Growth Factor A antagonists & inhibitors, Vascular Endothelial Growth Factor A genetics, Vascular Endothelial Growth Factor A immunology, Antibodies, Monoclonal immunology, Antibody Specificity immunology, Antineoplastic Agents immunology, Recombinant Fusion Proteins immunology
- Abstract
MP0250 is a multi-domain drug candidate currently being tested in clinical trials for the treatment of cancer. It comprises one anti-vascular endothelial growth factor-A (VEGF-A), one anti-hepatocyte growth factor (HGF), and two anti-human serum albumin (HSA) DARPin® domains within a single polypeptide chain. While there is first clinical validation of a single-domain DARPin® drug candidate, little is known about DARPin® drug candidates comprising multiple domains. Here, we show that MP0250 can be expressed at 15 g/L in soluble form in E. coli high cell-density fermentation, it is stable in soluble/frozen formulation for 2 years as assessed by reverse phase HPLC, it has picomolar potency in inhibiting VEGF-A and HGF in ELISA and cellular assays, and its domains are simultaneously active as shown by surface plasmon resonance. The inclusion of HSA-binding DARPin® domains leads to a favorable pharmacokinetic profile in mouse and cynomolgus monkey, with terminal half-lives of ∼ 30 hours in mouse and ∼ 5 days in cynomolgus monkey. MP0250 is thus a highly potent drug candidate that could be particularly useful in oncology. Beyond MP0250, the properties of MP0250 indicate that multi-domain DARPin® proteins can be valuable next-generation drug candidates.
- Published
- 2017
- Full Text
- View/download PDF
3. MP0250, a VEGF and HGF neutralizing DARPin ® molecule shows high anti-tumor efficacy in mouse xenograft and patient-derived tumor models.
- Author
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Fiedler U, Ekawardhani S, Cornelius A, Gilboy P, Bakker TR, Dolado I, Stumpp MT, and Dawson KM
- Abstract
Background: The VEGF/VEGFR and the HGF/cMET pathways are key mediators of the interplay of tumor cells and their microenvironment. However, inhibition of VEGF has been shown to produce only limited clinical benefit and inhibition of the activation of cMET by HGF has not translated into clinical benefit in pivotal trials. MP0250, a DARPin
® molecule that specifically inhibits both VEGF and HGF has been developed to explore the clinical potential of dual inhibition of these pathways., Results: MP0250 binding to VEGF and HGF inhibited downstream signalling through VEGFR2 and cMET resulting in inhibition of proliferation of VEGF- and HGF-dependent cells. Antitumor activity was demonstrated in VEGF- and HGF-dependent xenograft and syngeneic models with activity superior to that of individual VEGF- and HGF-blocking DARPin® molecules. Combination therapy studies showed potentiation of the antitumor activity of chemotherapy and immunotherapy agents, including an anti-PD1 antibody., Materials and Methods: Potency of MP0250 was assessed in cellular models and in a variety of xenograft models as monotherapy or in combination with standard-of-care drugs., Conclusions: Dual inhibition of VEGF and HGF by MP0250 produced powerful single agent and combination antitumor activity. This, together with increasing understanding of the role of the HGF/cMET pathway in resistance to VEGF (and other agents), supports testing of MP0250 in the clinic., Competing Interests: CONFLICTS OF INTEREST The authors declare being employees of Molecular Partners AG or have been employees of Molecular Partners AG at the time MP0250 has been developed.- Published
- 2017
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- View/download PDF
4. Immunology: how do T cells recognize antigen?
- Author
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Choudhuri K, Kearney A, Bakker TR, and van der Merwe PA
- Subjects
- Antigens metabolism, Humans, Major Histocompatibility Complex immunology, Antigens immunology, Immunity, Cellular immunology, Models, Immunological, Receptors, Antigen, T-Cell metabolism, Signal Transduction immunology, T-Lymphocytes immunology
- Abstract
T cells recognize small fragments of microorganisms (antigens) on the surface of other cells using T cell antigen receptors. The mechanism by which these receptors signal into T cells is controversial, but two recent studies provide important new clues.
- Published
- 2005
- Full Text
- View/download PDF
5. The nature of molecular recognition by T cells.
- Author
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Davis SJ, Ikemizu S, Evans EJ, Fugger L, Bakker TR, and van der Merwe PA
- Subjects
- Abatacept, Animals, Antigens, CD, Antigens, Differentiation immunology, CD2 Antigens immunology, CD28 Antigens immunology, CD4 Antigens immunology, CD8 Antigens immunology, CTLA-4 Antigen, Glycosylation, Mice, Protein Binding, Rats, Immunoconjugates, Lymphocyte Activation immunology, Receptors, Antigen, T-Cell immunology, T-Lymphocytes immunology
- Abstract
Considerable progress has been made in characterizing four key sets of interactions controlling antigen responsiveness in T cells, involving the following: the T cell antigen receptor, its coreceptors CD4 and CD8, the costimulatory receptors CD28 and CTLA-4, and the accessory molecule CD2. Complementary work has defined the general biophysical properties of interactions between cell surface molecules. Among the major conclusions are that these interactions are structurally heterogeneous, often reflecting clear-cut functional constraints, and that, although they all interact relatively weakly, hierarchical differences in the stabilities of the signaling complexes formed by these molecules may influence the sequence of steps leading to T cell activation. Here we review these developments and highlight the major challenges remaining as the field moves toward formulating quantitative models of T cell recognition.
- Published
- 2003
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- View/download PDF
6. CD45 ectodomain controls interaction with GEMs and Lck activity for optimal TCR signaling.
- Author
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Irles C, Symons A, Michel F, Bakker TR, van der Merwe PA, and Acuto O
- Subjects
- Animals, CD2 Antigens chemistry, CD2 Antigens genetics, CD2 Antigens metabolism, Cell Line, Dimerization, Humans, Leukocyte Common Antigens genetics, Leukosialin, Mice, Protein Structure, Tertiary, Rats, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Sialoglycoproteins chemistry, Sialoglycoproteins genetics, Sialoglycoproteins metabolism, Signal Transduction, T-Lymphocytes immunology, T-Lymphocytes metabolism, Thy-1 Antigens chemistry, Thy-1 Antigens genetics, Thy-1 Antigens metabolism, Transfection, Antigens, CD, Glycosphingolipids metabolism, Leukocyte Common Antigens chemistry, Leukocyte Common Antigens metabolism, Lymphocyte Specific Protein Tyrosine Kinase p56(lck) metabolism, Membrane Lipids metabolism, Receptors, Antigen, T-Cell metabolism
- Abstract
The transmembrane phosphatase CD45 regulates both Lck activity and T cell receptor (TCR) signaling. Here we have tested whether the large ectodomain of CD45 has a role in this regulation. A CD45 chimera containing the large ectodomain of CD43 efficiently rescues TCR signaling in CD45-null T cells, whereas CD45 chimeras containing small ectodomains from other phosphatases do not. Both basal Lck activity in unstimulated cells and the TCR-induced increase in tyrosine phosphorylation of the TCR zeta-chain and in Lck activity depend on the expression of CD45 with a large ectodomain. Unlike CD45 chimeras containing small ectodomains, both the CD45 chimera with a large ectodomain and wild-type CD45 itself are partially localized to glycosphingolipid-enriched membranes (GEMs). Taken together, these data show that the large CD45 ectodomain is required for optimal TCR signaling.
- Published
- 2003
- Full Text
- View/download PDF
7. Comparison of CD22 binding to native CD45 and synthetic oligosaccharide.
- Author
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Bakker TR, Piperi C, Davies EA, and Merwe PA
- Subjects
- Acrylic Resins metabolism, Animals, Antigens, CD biosynthesis, Antigens, CD isolation & purification, Antigens, Differentiation, B-Lymphocyte biosynthesis, Antigens, Differentiation, B-Lymphocyte isolation & purification, CHO Cells, Cell Adhesion Molecules biosynthesis, Cell Adhesion Molecules isolation & purification, Cricetinae, Kinetics, Lactose analogs & derivatives, Ligands, Mice, Polymers metabolism, Rats, Recombinant Proteins immunology, Sialic Acid Binding Ig-like Lectin 2, Solubility, Antigens, CD metabolism, Antigens, Differentiation, B-Lymphocyte metabolism, Cell Adhesion Molecules metabolism, Lactose metabolism, Lectins, Leukocyte Common Antigens metabolism, Oligosaccharides metabolism
- Abstract
The B cell surface molecule CD22 is a member of the Siglec family. Siglecs possess a conserved membrane-distal immunoglobulin domain that mediates binding to sialylated glycoproteins or glycolipids. Although the structural basis of sialic acid recognition by Siglecs is quite well understood, the binding properties of the interaction between Siglecs and their native ligands have not been investigated. CD22 binding requires alpha2-6-linked sialic acid, which is mostly carried on N-glycans. One protein that carries such N-glycans is CD45. In this study we used surface plasmon resonance to perform thermodynamic and kinetic analysis of CD22 binding to native CD45. CD22 bound with a low affinity (K(d) 130 microM at 25 degrees C) and very fast kinetics (k(off) >or=18 s(-1), calculated k(on) >or=1.5 x 10(5) M(-1)s(-1)). Van't Hoff analysis revealed that binding was enthalpically driven at physiological temperatures, as is typical of most lectin-carbohydrate interactions. Since there is evidence that CD22 binds preferably to CD45, even though many cell surface proteins carry alpha2-6-linked sialic acid, we compared the affinities of CD22 binding to CD45, to CD4 carrying alpha2-6-linked sialic acid, and to a synthetic alpha2-6-sialoglycoconjugate. The affinities did not differ substantially, suggesting that CD22 binds preferentially to CD45 not because the latter presents higher affinity ligands but because it carries multiple copies of thereof.
- Published
- 2002
- Full Text
- View/download PDF
8. Self-help in T cell recognition?
- Author
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Bakker TR and van der Merwe PA
- Subjects
- Animals, B-Lymphocytes immunology, Cell Membrane metabolism, Histocompatibility Antigens Class II immunology, Humans, Membrane Proteins metabolism, Peptide Fragments immunology, Autoantigens immunology, Cell Communication immunology, Isoantigens immunology, Models, Immunological, Receptors, Antigen, T-Cell immunology, Self Tolerance immunology
- Published
- 2002
- Full Text
- View/download PDF
9. CD8beta endows CD8 with efficient coreceptor function by coupling T cell receptor/CD3 to raft-associated CD8/p56(lck) complexes.
- Author
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Arcaro A, Grégoire C, Bakker TR, Baldi L, Jordan M, Goffin L, Boucheron N, Wurm F, van der Merwe PA, Malissen B, and Luescher IF
- Subjects
- Amino Acid Sequence, Animals, CD3 Complex metabolism, CHO Cells, Calcium metabolism, Cricetinae, Molecular Sequence Data, Phosphorylation, CD8 Antigens metabolism, Lymphocyte Specific Protein Tyrosine Kinase p56(lck) metabolism, Membrane Microdomains metabolism, Receptor-CD3 Complex, Antigen, T-Cell metabolism
- Abstract
The extraordinary sensitivity of CD8+ T cells to recognize antigen impinges to a large extent on the coreceptor CD8. While several studies have shown that the CD8beta chain endows CD8 with efficient coreceptor function, the molecular basis for this is enigmatic. Here we report that cell-associated CD8alphabeta, but not CD8alphaalpha or soluble CD8alphabeta, substantially increases the avidity of T cell receptor (TCR)-ligand binding. To elucidate how the cytoplasmic and transmembrane portions of CD8beta endow CD8 with efficient coreceptor function, we examined T1.4 T cell hybridomas transfected with various CD8beta constructs. T1.4 hybridomas recognize a photoreactive Plasmodium berghei circumsporozoite (PbCS) peptide derivative (PbCS (4-azidobezoic acid [ABA])) in the context of H-2K(d), and permit assessment of TCR-ligand binding by TCR photoaffinity labeling. We find that the cytoplasmic portion of CD8beta, mainly due to its palmitoylation, mediates partitioning of CD8 in lipid rafts, where it efficiently associates with p56(lck). In addition, the cytoplasmic portion of CD8beta mediates constitutive association of CD8 with TCR/CD3. The resulting TCR-CD8 adducts exhibit high affinity for major histocompatibility complex (MHC)-peptide. Importantly, because CD8alphabeta partitions in rafts, its interaction with TCR/CD3 promotes raft association of TCR/CD3. Engagement of these TCR/CD3-CD8/lck adducts by multimeric MHC-peptide induces activation of p56(lck) in rafts, which in turn phosphorylates CD3 and initiates T cell activation.
- Published
- 2001
- Full Text
- View/download PDF
10. Impaired fetal thymocyte development after efficient adenovirus-mediated inhibition of NF-kappa B activation.
- Author
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Bakker TR, Renno T, and Jongeneel CV
- Subjects
- Adenoviridae immunology, Animals, Apoptosis genetics, Apoptosis immunology, Cell Division genetics, Cell Division immunology, Cell Line, DNA-Binding Proteins genetics, Humans, Hyaluronan Receptors biosynthesis, Hyaluronan Receptors genetics, I-kappa B Proteins, Mice, Mice, Inbred C57BL, Mice, Transgenic, Organ Culture Techniques, Receptors, Antigen, T-Cell, alpha-beta biosynthesis, Receptors, Interleukin-2 biosynthesis, Receptors, Interleukin-2 genetics, T-Lymphocytes metabolism, T-Lymphocytes virology, Thymus Gland metabolism, Thymus Gland virology, Transfection immunology, Adenoviridae genetics, Embryonic and Fetal Development genetics, Embryonic and Fetal Development immunology, NF-kappa B antagonists & inhibitors, NF-kappa B metabolism, T-Lymphocytes pathology, Thymus Gland pathology
- Abstract
We introduce a new experimental system combining adenovirus-mediated gene transfer and fetal thymic organ culture (FTOC). This system allowed us to efficiently express in developing thymocytes a mutant form of the NF-kappa B inhibitor I kappa B alpha (mut-I kappa B) and to study the maturation defects occurring when NF-kappa B activation is inhibited during fetal development. Fetal thymocytes infected with adenovirus containing mut-I kappa B were found to develop normally until the CD44-CD25+, CD4-CD8- double-negative stage, while production of more mature double-positive and single-positive populations was strongly decreased. Proliferation, as measured by the percentage of cells in cycle appeared normal, as did rearrangement and expression of the TCR beta-chain. However, apoptosis was much higher in FTOC infected with adenovirus containing mut-I kappa B than in FTOC infected with a control virus. Taken together, these results suggest that NF-kappa B plays a crucial role in ensuring the differentiation and survival of thymocytes in the early stages of their development.
- Published
- 1999
11. Efficient adenoviral transfer of NF-kappaB inhibitor sensitizes melanoma to tumor necrosis factor-mediated apoptosis.
- Author
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Bakker TR, Reed D, Renno T, and Jongeneel CV
- Subjects
- Humans, I-kappa B Proteins, Melanoma pathology, Recombinant Proteins therapeutic use, Transfection, Tumor Cells, Cultured, Adenoviridae genetics, Apoptosis drug effects, DNA-Binding Proteins therapeutic use, Melanoma drug therapy, NF-kappa B antagonists & inhibitors, Tumor Necrosis Factor-alpha therapeutic use
- Abstract
It has been suggested that the in vitro cytotoxicity of tumor necrosis factor (TNF) toward a number of transformed cell lines could make it a useful agent for anti-tumor therapy. However, many tumor cell lines are resistant to TNF-induced cell death. It has been shown that transcription factors of the NF-kappaB family, which are themselves activated by TNF, could protect cells against apoptotic cell death. To test whether melanoma cells, which are normally resistant to TNF-mediated killing, can be made susceptible by inhibiting the activation of NF-kappaB, we generated a recombinant adenovirus expressing a dominant mutant form of IkappaB alpha under the control of a CMV promoter. We show here that adenovirus-mediated inhibition of NF-kappaB function rendered melanoma cells susceptible to the cytotoxic effects of TNF, and thus that NF-kappaB-inhibiting adenoviruses could become useful adjuvants in TNF-based anti-tumor therapies.
- Published
- 1999
- Full Text
- View/download PDF
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