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3 results on '"Baldrian, Petr [0000-0002-8983-2721]"'

1. Symbiotic status alters fungal eco-evolutionary offspring trajectories

Author

Alexander von Humboldt Foundation, Australian Research Council, Federal Ministry of Education and Research (Germany), German Research Foundation, German Academic Exchange Service, Czech Science Foundation, European Commission, Universities Australia, Aguilar Trigueros, César A. [0000-0003-0512-9500], Krah, Franz-Sebastian [0000-0001-7866-7508], Zanne, Amy [0000-0001-6379-9452], Abrego, Nerea [0000-0001-6347-6127], Baldrian, Petr [0000-0002-8983-2721], Bässler, Claus [0000-0001-8177-8997], Bissett, Andrew [0000-0001-7396-1484], Chen, Baodong [0000-0002-1790-7800], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Egidi, E. [0000-0002-1211-2355], Heilmann-Clausen, Jacob [0000-0003-4713-6004], Kohout, Petr [0000-0002-3985-2310], Maestre, Fernando T. [0000-0002-7434-4856], Singh, Brajesh K. [0000-0003-4413-4185], Veresoglou, Stavros [0000-0001-6387-4109], Zhang, Haiyang [0000-0001-7951-0502], Aguilar Trigueros, César A., Krah, Franz-Sebastian, Cornwell, William K., Zanne, Amy, Abrego, Nerea, Anderson, Ian C., Andrew, Carrie J., Baldrian, Petr, Bässler, Claus, Bissett, Andrew, Chaudhary, V.B., Chen, Baodong, Chen, Yongliang, Delgado-Baquerizo, Manuel, Deveautour, Coline, Egidi, E., Flores-Moreno, Habacuc, Golan, Jacob, Heilmann-Clausen, Jacob, Hempel, Stefan, Hu, Yajun, Kauserud, Håvard, Kivlin, Stephanie N., Kohout, Petr, Lammel, Daniel R., Maestre, Fernando T., Pringle, Anne, Purhonen, Jenna, Singh, Brajesh K., Veresoglou, Stavros, Vetrovský, Tomáš, Zhang, Haiyang, Alexander von Humboldt Foundation, Australian Research Council, Federal Ministry of Education and Research (Germany), German Research Foundation, German Academic Exchange Service, Czech Science Foundation, European Commission, Universities Australia, Aguilar Trigueros, César A. [0000-0003-0512-9500], Krah, Franz-Sebastian [0000-0001-7866-7508], Zanne, Amy [0000-0001-6379-9452], Abrego, Nerea [0000-0001-6347-6127], Baldrian, Petr [0000-0002-8983-2721], Bässler, Claus [0000-0001-8177-8997], Bissett, Andrew [0000-0001-7396-1484], Chen, Baodong [0000-0002-1790-7800], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Egidi, E. [0000-0002-1211-2355], Heilmann-Clausen, Jacob [0000-0003-4713-6004], Kohout, Petr [0000-0002-3985-2310], Maestre, Fernando T. [0000-0002-7434-4856], Singh, Brajesh K. [0000-0003-4413-4185], Veresoglou, Stavros [0000-0001-6387-4109], Zhang, Haiyang [0000-0001-7951-0502], Aguilar Trigueros, César A., Krah, Franz-Sebastian, Cornwell, William K., Zanne, Amy, Abrego, Nerea, Anderson, Ian C., Andrew, Carrie J., Baldrian, Petr, Bässler, Claus, Bissett, Andrew, Chaudhary, V.B., Chen, Baodong, Chen, Yongliang, Delgado-Baquerizo, Manuel, Deveautour, Coline, Egidi, E., Flores-Moreno, Habacuc, Golan, Jacob, Heilmann-Clausen, Jacob, Hempel, Stefan, Hu, Yajun, Kauserud, Håvard, Kivlin, Stephanie N., Kohout, Petr, Lammel, Daniel R., Maestre, Fernando T., Pringle, Anne, Purhonen, Jenna, Singh, Brajesh K., Veresoglou, Stavros, Vetrovský, Tomáš, and Zhang, Haiyang

Abstract

Despite host-fungal symbiotic interactions being ubiquitous in all ecosystems, understanding how symbiosis has shaped the ecology and evolution of fungal spores that are involved in dispersal and colonization of their hosts has been ignored in life-history studies. We assembled a spore morphology database covering over 26,000 species of free-living to symbiotic fungi of plants, insects and humans and found more than eight orders of variation in spore size. Evolutionary transitions in symbiotic status correlated with shifts in spore size, but the strength of this effect varied widely among phyla. Symbiotic status explained more variation than climatic variables in the current distribution of spore sizes of plant-associated fungi at a global scale while the dispersal potential of their spores is more restricted compared to free-living fungi. Our work advances life-history theory by highlighting how the interaction between symbiosis and offspring morphology shapes the reproductive and dispersal strategies among living forms.

Published
2023

2. Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Author

Joint Genome Institute (US), Institut Carnot Pasteur MS, l’Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (France), Conseil Régional Provence-Alpes-Côte d'Azur, Centre National de la Recherche Scientifique (France), Labex ARBRE, Conseil Régional de Lorraine, European Commission, Hungarian Academy of Sciences, Ministerio de Economía, Industria y Competitividad (España), Consejo Superior de Investigaciones Científicas (España), Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Czech Science Foundation, Hage, Hayat [0000-0003-4118-1816], Miyauchi, Shingo [0000-0002-0620-5547], Virágh, Máté [0000-0002-2278-1288], Drula, Elodie [0000-0002-9168-5214], Min, Byoungnam [0000-0002-7469-088X], Favel, Anne [0000-0003-2255-3637], Lesage-Meessen, Laurence [0000-0003-2275-2978], Merényi, Z. [0000-0003-1114-3739], Eugenio, Laura I. de [0000-0002-0496-8663], Morin, Emmanuelle [0000-0002-7268-972X], Martínez, Ángel T. [0000-0002-1584-2863], Baldrian, Petr [0000-0002-8983-2721], Stursová, Martina [0000-0003-1387-6426], Martínez, María Jesús [0000-0003-2166-1097], Novotny, Cenek [0000-0003-3274-471X], Maurice, Sundy [0000-0002-5376-0981], Andreopoulos, William [0000-0001-9097-1123], LaButti, Kurt M. [0000-0002-5838-1972], Na, Hyunsoo [0000-0002-4386-017X], Barry, Kerrie [0000-0002-8999-6785], Lipzen, Anna [0000-0003-2293-9329], Henrissat, Bernard [0000-0002-3434-8588], Ahrendt, Steven [0000-0002-3029-2126], Grigoriev, Igor V. [0000-0002-3136-8903], Rosso, Marie-Noëlle [0000-0001-8317-7220], Hage, Hayat, Miyauchi, Shingo, Virágh, Máté, Drula, Elodie, Min, Byoungnam, Chaduli, Delphine, Navarro, David, Favel, Anne, Norest, Manon, Lesage-Meessen, Laurence, Bálint, Balázs, Merényi, Z., Eugenio, Laura I. de, Morin, Emmanuelle, Martínez, Ángel T., Baldrian, Petr, Stursová, Martina, Martínez, María Jesús, Novotny, Cenek, Magnuson, Jon K., Spatafora, Joey W., Maurice, Sundy, Pangilinan, Jasmyn, Andreopoulos, William, LaButti, Kurt M., Hundley, Hope, Na, Hyunsoo, Kuo, Alan, Barry, Kerrie, Lipzen, Anna, Henrissat, Bernard, Riley, Robert, Ahrendt, Steven, Nagy, Lazslo G., Grigoriev, Igor V., Martin, Francis, Rosso, Marie-Noëlle, Joint Genome Institute (US), Institut Carnot Pasteur MS, l’Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (France), Conseil Régional Provence-Alpes-Côte d'Azur, Centre National de la Recherche Scientifique (France), Labex ARBRE, Conseil Régional de Lorraine, European Commission, Hungarian Academy of Sciences, Ministerio de Economía, Industria y Competitividad (España), Consejo Superior de Investigaciones Científicas (España), Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Czech Science Foundation, Hage, Hayat [0000-0003-4118-1816], Miyauchi, Shingo [0000-0002-0620-5547], Virágh, Máté [0000-0002-2278-1288], Drula, Elodie [0000-0002-9168-5214], Min, Byoungnam [0000-0002-7469-088X], Favel, Anne [0000-0003-2255-3637], Lesage-Meessen, Laurence [0000-0003-2275-2978], Merényi, Z. [0000-0003-1114-3739], Eugenio, Laura I. de [0000-0002-0496-8663], Morin, Emmanuelle [0000-0002-7268-972X], Martínez, Ángel T. [0000-0002-1584-2863], Baldrian, Petr [0000-0002-8983-2721], Stursová, Martina [0000-0003-1387-6426], Martínez, María Jesús [0000-0003-2166-1097], Novotny, Cenek [0000-0003-3274-471X], Maurice, Sundy [0000-0002-5376-0981], Andreopoulos, William [0000-0001-9097-1123], LaButti, Kurt M. [0000-0002-5838-1972], Na, Hyunsoo [0000-0002-4386-017X], Barry, Kerrie [0000-0002-8999-6785], Lipzen, Anna [0000-0003-2293-9329], Henrissat, Bernard [0000-0002-3434-8588], Ahrendt, Steven [0000-0002-3029-2126], Grigoriev, Igor V. [0000-0002-3136-8903], Rosso, Marie-Noëlle [0000-0001-8317-7220], Hage, Hayat, Miyauchi, Shingo, Virágh, Máté, Drula, Elodie, Min, Byoungnam, Chaduli, Delphine, Navarro, David, Favel, Anne, Norest, Manon, Lesage-Meessen, Laurence, Bálint, Balázs, Merényi, Z., Eugenio, Laura I. de, Morin, Emmanuelle, Martínez, Ángel T., Baldrian, Petr, Stursová, Martina, Martínez, María Jesús, Novotny, Cenek, Magnuson, Jon K., Spatafora, Joey W., Maurice, Sundy, Pangilinan, Jasmyn, Andreopoulos, William, LaButti, Kurt M., Hundley, Hope, Na, Hyunsoo, Kuo, Alan, Barry, Kerrie, Lipzen, Anna, Henrissat, Bernard, Riley, Robert, Ahrendt, Steven, Nagy, Lazslo G., Grigoriev, Igor V., Martin, Francis, and Rosso, Marie-Noëlle

Abstract

Because they comprise some of the most efficient wood-decayers, Polyporales fungi impact carbon cycling in forest environment. Despite continuous discoveries on the enzymatic machinery involved in wood decomposition, the vision on their evolutionary adaptation to wood decay and genome diversity remains incomplete., We combined the genome sequence information from 50 Polyporales species, including 26 newly sequenced genomes and sought for genomic and functional adaptations to wood decay through the analysis of genome composition and transcriptome responses to different carbon sources.The genomes of Polyporales from different phylogenetic clades showed poor conservation in macrosynteny, indicative of genome rearrangements. We observed different gene family expansion/contraction histories for plant cell wall degrading enzymes in core polyporoids and phlebioids and captured expansions for genes involved in signaling and regulation in the lineages of white rotters. Furthermore, we identified conserved cupredoxins, thaumatin-like proteins and Lytic Polysaccharide Monooxygenases with a yet uncharacterized appended module as new candidate players in wood decomposition.Given the current need for enzymatic toolkits dedicated to the transformation of renewable carbon sources, the observed genomic diversity among Polyporales strengthens the relevance of mining Polyporales biodiversity to understand the molecular mechanisms of wood decay.

Published
2021

3. Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Author

Hayat, Hage, Shingo, Miyauchi, Máté, Virágh, Elodie, Drula, Byoungnam, Min, Delphine, Chaduli, David, Navarro, Anne, Favel, Manon, Norest, Laurence, Lesage-Meessen, Balázs, Bálint, Zsolt, Merényi, Laura, de Eugenio, Emmanuelle, Morin, Angel T, Martínez, Petr, Baldrian, Martina, Štursová, María Jesús, Martínez, Cenek, Novotny, Jon K, Magnuson, Joey W, Spatafora, Sundy, Maurice, Jasmyn, Pangilinan, Willian, Andreopoulos, Kurt, LaButti, Hope, Hundley, Hyunsoo, Na, Alan, Kuo, Kerrie, Barry, Anna, Lipzen, Bernard, Henrissat, Robert, Riley, Steven, Ahrendt, László G, Nagy, Igor V, Grigoriev, Francis, Martin, Marie-Noëlle, Rosso, Biodiversité et Biotechnologie Fongiques (BBF), Aix Marseille Université (AMU)-École Centrale de Marseille (ECM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Max Planck Institute for Plant Breeding Research (MPIPZ), Biological Research Centre [Szeged] (BRC), Architecture et fonction des macromolécules biologiques (AFMB), Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), US Department of Energy Joint Genome Institute, University of California, Lawrence Berkeley National Laboratory [Berkeley] (LBNL), Centro de Investigaciones Biológicas Margarita Salas, Interactions Arbres-Microorganismes (IAM), Université de Lorraine (UL)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Institute of Microbiology of the ASCR, v. v. i. [Prague, Czech Republic], Technical University of Ostrava [Ostrava] (VSB), Pacific Northwest National Laboratory (PNNL), Department of Botany and Plant Pathology, Oregon State University (OSU), University of Oslo (UiO), King Abdulaziz University, Institute of Biology [Budapest], Faculty of Sciences [Budapest], Eötvös Loránd University (ELTE)-Eötvös Loránd University (ELTE), United States Department of Energy (DOE) DE-AC02-05CH11231DE-SC0019427Institut Carnot 3BCARRegion Provence-Alpes-Cote d'AzurGroupement de Recherche Genomique EnvironnementaleRegion Grand-EstEuropean CommissionHungarian Academy of Sciences' Momentum Program LP2019-13/2019Spanish Ministry of Economy, Industry and Competitiveness BIO2017-86559-RConsejo Superior de Investigaciones Cientificas PIE-201620E081Agencia Estatal de InvestigacionMinistry of Science, Innovation and Universities RTI2018-093683-B-I00Grant Agency of the Czech Republic 17-20110SFrench National Research Institute for Agriculture, Food and Environment, ANR-11-LABX-0002,ARBRE,Recherches Avancées sur l'Arbre et les Ecosytèmes Forestiers(2011), University of California (UC), Joint Genome Institute (US), Institut Carnot Pasteur MS, l’Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (France), Conseil Régional Provence-Alpes-Côte d'Azur, Centre National de la Recherche Scientifique (France), Labex ARBRE, Conseil Régional de Lorraine, European Commission, Hungarian Academy of Sciences, Ministerio de Economía, Industria y Competitividad (España), Consejo Superior de Investigaciones Científicas (España), Agencia Estatal de Investigación (España), Ministerio de Ciencia, Innovación y Universidades (España), Czech Science Foundation, Hage, Hayat, Miyauchi, Shingo, Virágh, Máté, Drula, Elodie, Min, Byoungnam, Favel, Anne, Lesage-Meessen, Laurence, Merényi, Z., Eugenio, Laura I. de, Morin, Emmanuelle, Martínez, Ángel T., Baldrian, Petr, Stursová, Martina, Martínez, María Jesús, Novotny, Cenek, Maurice, Sundy, Andreopoulos, William, LaButti, Kurt M., Na, Hyunsoo, Barry, Kerrie, Lipzen, Anna, Henrissat, Bernard, Ahrendt, Steven, Grigoriev, Igor V., Rosso, Marie-Noëlle, Hage, Hayat [0000-0003-4118-1816], Miyauchi, Shingo [0000-0002-0620-5547], Virágh, Máté [0000-0002-2278-1288], Drula, Elodie [0000-0002-9168-5214], Min, Byoungnam [0000-0002-7469-088X], Favel, Anne [0000-0003-2255-3637], Lesage-Meessen, Laurence [0000-0003-2275-2978], Merényi, Z. [0000-0003-1114-3739], Eugenio, Laura I. de [0000-0002-0496-8663], Morin, Emmanuelle [0000-0002-7268-972X], Martínez, Ángel T. [0000-0002-1584-2863], Baldrian, Petr [0000-0002-8983-2721], Stursová, Martina [0000-0003-1387-6426], Martínez, María Jesús [0000-0003-2166-1097], Novotny, Cenek [0000-0003-3274-471X], Maurice, Sundy [0000-0002-5376-0981], Andreopoulos, William [0000-0001-9097-1123], LaButti, Kurt M. [0000-0002-5838-1972], Na, Hyunsoo [0000-0002-4386-017X], Barry, Kerrie [0000-0002-8999-6785], Lipzen, Anna [0000-0003-2293-9329], Henrissat, Bernard [0000-0002-3434-8588], Ahrendt, Steven [0000-0002-3029-2126], Grigoriev, Igor V. [0000-0002-3136-8903], and Rosso, Marie-Noëlle [0000-0001-8317-7220]

Subjects
Special Issue Articles, [SDV]Life Sciences [q-bio], Wood decay, Microbiology, Fungal Proteins, Genetics, Plant cell wall, Fungal ecology, Phylogeny, Evolutionary Biology, Genome, Basidiomycota, Human Genome, Special Issue Article, Phylogenomics, Biodiversity, Wood, Climate Action, Fungal, Genome, Fungal, Polyporales, Transcriptome, Lignocellulose, CAZymes, Biotechnology
Abstract

17 p.-7 fig., Because they comprise some of the most efficient wood-decayers, Polyporales fungi impact carbon cycling in forest environment. Despite continuous discoveries on the enzymatic machinery involved in wood decomposition, the vision on their evolutionary adaptation to wood decay and genome diversity remains incomplete., We combined the genome sequence information from 50 Polyporales species, including 26 newly sequenced genomes and sought for genomic and functional adaptations to wood decay through the analysis of genome composition and transcriptome responses to different carbon sources.The genomes of Polyporales from different phylogenetic clades showed poor conservation in macrosynteny, indicative of genome rearrangements. We observed different gene family expansion/contraction histories for plant cell wall degrading enzymes in core polyporoids and phlebioids and captured expansions for genes involved in signaling and regulation in the lineages of white rotters. Furthermore, we identified conserved cupredoxins, thaumatin-like proteins and Lytic Polysaccharide Monooxygenases with a yet uncharacterized appended module as new candidate players in wood decomposition.Given the current need for enzymatic toolkits dedicated to the transformation of renewable carbon sources, the observed genomic diversity among Polyporales strengthens the relevance of mining Polyporales biodiversity to understand the molecular mechanisms of wood decay., This work was supported by the U.S. Department of Energy Joint Genome Institute, a Department of Energy Office of Science User Facility (grant # DE-AC02-05CH11231, DESC0019427 to I.V.G. and B.M.); Institut Carnot 3BCAR, the French National Research Institute for Agriculture, Food and Environment, The Region Provence Alpes Côte d’Azur and the Groupement de Recherche Génomique Environnementale to H.H.; the Laboratory of Excellence ARBRE (grant # ANR-11-LABX-0002-01 to F.M.); the Region Lorraine and the European Regional Development Fund to F.M.; the Hungarian Academy of Sciences’ Momentum Program (grant # LP2019-13/2019 to L.G.N.); the Spanish Ministry of Economy, Industry and Competitiveness (grant # BIO2017-86559-R to A.T.M.); the Consejo Superior de Investigaciones Científicas (grant # PIE-201620E081 to A.T.M.); the Agencia Estatal de Investigación, the European Regional Development Fund and the Ministry of Science, Innovation and Universities (grant # RTI2018-093683-B-I00 to L.D.E. and M.J.M.) and the Czech Science Foundation (grant# 17-20110S to P.B. and M.Š.).

Published
2021
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