90 results on '"Baoqing, Chen"'
Search Results
2. DNA methylation classifier to diagnose pancreatic ductal adenocarcinoma metastases from different anatomical sites
- Author
-
Teodor G. Calina, Eilís Perez, Elena Grafenhorst, Jamal Benhamida, Simon Schallenberg, Adrian Popescu, Ines Koch, Tobias Janik, BaoQing Chen, Jana Ihlow, Stephanie Roessler, Benjamin Goeppert, Bruno Sinn, Marcus Bahra, George A. Calin, Eliane T. Taube, Uwe Pelzer, Christopher C. M. Neumann, David Horst, Erik Knutsen, David Capper, and Mihnea P. Dragomir
- Subjects
Pancreatic ductal adenocarcinoma ,DNA methylation ,Molecular diagnosis ,Cancer of unknown primary ,Epigenetics ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background We have recently constructed a DNA methylation classifier that can discriminate between pancreatic ductal adenocarcinoma (PAAD) liver metastasis and intrahepatic cholangiocarcinoma (iCCA) with high accuracy (PAAD-iCCA-Classifier). PAAD is one of the leading causes of cancer of unknown primary and diagnosis is based on exclusion of other malignancies. Therefore, our focus was to investigate whether the PAAD-iCCA-Classifier can be used to diagnose PAAD metastases from other sites. Methods For this scope, the anomaly detection filter of the initial classifier was expanded by 8 additional mimicker carcinomas, amounting to a total of 10 carcinomas in the negative class. We validated the updated version of the classifier on a validation set, which consisted of a biological cohort (n = 3579) and a technical one (n = 15). We then assessed the performance of the classifier on a test set, which included a positive control cohort of 16 PAAD metastases from various sites and a cohort of 124 negative control samples consisting of 96 breast cancer metastases from 18 anatomical sites and 28 carcinoma metastases to the brain. Results The updated PAAD-iCCA-Classifier achieved 98.21% accuracy on the biological validation samples, and on the technical validation ones it reached 100%. The classifier also correctly identified 15/16 (93.75%) metastases of the positive control as PAAD, and on the negative control, it correctly classified 122/124 samples (98.39%) for a 97.85% overall accuracy on the test set. We used this DNA methylation dataset to explore the organotropism of PAAD metastases and observed that PAAD liver metastases are distinct from PAAD peritoneal carcinomatosis and primary PAAD, and are characterized by specific copy number alterations and hypomethylation of enhancers involved in epithelial-mesenchymal-transition. Conclusions The updated PAAD-iCCA-Classifier (available at https://classifier.tgc-research.de/ ) can accurately classify PAAD samples from various metastatic sites and it can serve as a diagnostic aid.
- Published
- 2024
- Full Text
- View/download PDF
3. Enhancing soil water stability and retention through plastic mulching under atypical climatic conditions on the Chinese loess plateau
- Author
-
Xvlun Man, Daozhi Gong, Xurong Mei, Baoqing Chen, Haoru Li, and Weiping Hao
- Subjects
Mulching ,Modeling ,HYDRUS-2D ,Soil water dynamic ,Atypical climatic conditions ,Agriculture (General) ,S1-972 ,Agricultural industries ,HD9000-9495 - Abstract
Mulching is an agricultural practice that is extensively implemented worldwide to conserve water in soil to enhance agricultural production,and especially in the temperate continental monsoon climate regions. However, the mechanism controlling soil moisture evaporation, infiltration, and retention by mulching is unclear. We assess the impact of various mulching regimes on the soil–water equilibrium in the root zone of corn fields under atypical climate conditions(Excessive Precipitation) from 2020–2021 in five treatments: (1) ridges mulched with plastic film and furrows without mulching (RF), (2) conventional flat planting with full plastic mulching (FPM), (3) conventional flat planting with straw mulching (SM), (4) conventional flat planting with partial plastic mulching (PPM), and (5) conventional (control) flat planting with no mulching (CK). The HYDRUS-2D model was calibrated and validated using experimental data, to assess soil water content, water flux, and soil water balance within a two-dimensional soil profile. This model accurately replicated the root zone within the soil profile under all mulching scenarios, with numerical simulation outcomes closely aligning with observed measurements. Average R² values for FPM, PPM, RF, SM, and CK scenarios were 0.76, 0.75, 0.86, 0.85, and 0.77, respectively. During the 2020 and 2021 growing seasons, characterized by increased rainfall, plastic-covered treatments (FPM, PPM, RF) more efficiently reduced soil evaporation and enhanced soil-water retention. The combined soil drainage and storage changes for FPM, PPM, RF, and SM treatments exceeded those of CK by an average of 114.57, 64.93, 77.38, and 6.74 mm, respectively. FPM, PPM, and RF treatments had substantial water-retention capabilities during years of atypical climate. Notably, FPM ensured adequate water supply, facilitated deep soil water replenishment, and more effectively maintained soil water stability and retention. This underscores the pivotal regulatory function of mulching in mitigating the impacts of consecutive years of unusual climatic conditions.
- Published
- 2024
- Full Text
- View/download PDF
4. Long-term survival and post-hoc analysis of toripalimab plus definitive chemoradiotherapy for oesophageal squamous cell carcinoma: insights from the EC-CRT-001 phase II trialResearch in context
- Author
-
Ruixi Wang, Yihong Ling, Baoqing Chen, Yujia Zhu, Yonghong Hu, Mengzhong Liu, Yadi Yang, Li Zhang, Yingxin Lv, Shiliang Liu, Qiaoqiao Li, and Mian Xi
- Subjects
Oesophageal squamous cell carcinoma ,Definitive chemoradiotherapy ,Toripalimab ,Immune-related adverse event ,Survival ,Medicine (General) ,R5-920 - Abstract
Summary: Background: In the EC-CRT-001 phase II study, the combination of toripalimab (an anti-programmed death-1 antibody) and definitive chemoradiotherapy (CRT) has shown promising efficacy in patients with locally advanced oesophageal squamous cell carcinoma (ESCC). Here, we reported the long-term outcomes and post-hoc exploratory analyses. Methods: This single-arm, phase II trial enrolled 42 patients diagnosed with unresectable stage I–IVA ESCC was conducted at Sun Yat-sen University Cancer Center between November 2019 and January 2021. Treatment consisted of chemotherapy (weekly 50 mg/m2 of paclitaxel and 25 mg/m2 of cisplatin for five cycles), concurrent radiotherapy (50.4 Gy in 28 fractions), and toripalimab (240 mg every 3 weeks for up to 1 year). The primary endpoint was clinical complete response (CR) rate at 3 months after CRT completion. The 3-year overall survival (OS) and progression-free survival (PFS) rates were evaluated. Additionally, the exploratory objectives included analysing recurrence patterns, assessing the associations between immune-related adverse events (irAEs) and efficacy, and identifying potential predictors for irAEs. The trial was registered with ClinicalTrials.gov (NCT04005170). Findings: With a median follow-up of 44.3 months (IQR 40.8–46.1), the 3-year OS and PFS rates were 44.8% (95% CI 31.9–62.8) and 35.7% (95% CI 23.8–53.6), respectively. Patients who failed to achieve a clinical complete response (CR) demonstrated significantly worse OS (hazard ratio [HR] = 13.73, 95% CI 4.43–42.54, P
- Published
- 2024
- Full Text
- View/download PDF
5. Predictive role of ctDNA in esophageal squamous cell carcinoma receiving definitive chemoradiotherapy combined with toripalimab
- Author
-
Baoqing Chen, Shiliang Liu, Yujia Zhu, Ruixi Wang, Xingyuan Cheng, Biqi Chen, Mihnea P. Dragomir, Yaru Zhang, Yonghong Hu, Mengzhong Liu, Qiaoqiao Li, Hong Yang, and Mian Xi
- Subjects
Science - Abstract
Abstract The combination of toripalimab (an anti-PD-1 antibody) with definitive chemoradiotherapy (CRT) demonstrated encouraging efficacy against locally advanced esophageal squamous cell carcinoma (ESCC) in the EC-CRT-001 phase II trial (NCT04005170). The primary endpoint of this trial was the clinical complete response rate (cCR), and the secondary endpoints included overall survival (OS), progression-free survival (PFS), duration of response, and quality of life. The exploratory analyses of EC-CRT-001 include exploring the role of circulating tumor DNA (ctDNA) and blood-based tumor mutational burden (bTMB) in predicting the response and survival. In total, 118 blood and 35 tissue samples from 42 enrolled patients were included in the analyses. We found that ctDNA-negative patients achieved a higher cCR compared to those with detectable ctDNA during CRT (83%, 19/23 vs. 39%, 7/18; p = 0.008) or post-CRT (78%, 21/27 vs. 30%, 3/10; p = 0.017). Patients with detectable ctDNA during CRT had shorter PFS (p = 0.014). Similarly, patients with post-CRT detectable ctDNA had a significantly shorter PFS (p = 0.012) and worse OS (p = 0.004). Moreover, patients with high bTMB levels during CRT had prolonged OS (p = 0.027). In conclusion, ctDNA and bTMB have the potential to predict treatment efficacy and survival in ESCC treated with CRT and immunotherapy.
- Published
- 2024
- Full Text
- View/download PDF
6. AoI-Minimal Task Assignment and Trajectory Optimization in Multi-UAV-Assisted Wireless Powered IoT Networks
- Author
-
Yu Gu, Hongbing Qiu, and Baoqing Chen
- Subjects
unmanned aerial vehicle (UAV) ,internet of things (IoT) ,energy transfer and data collection ,age of information (AoI) ,task assignment and trajectory optimization ,Motor vehicles. Aeronautics. Astronautics ,TL1-4050 - Abstract
This paper investigates the energy transfer and data collection problem of multiple unmanned aerial vehicle (UAV)-assisted wireless-powered Internet of Things (IoT) networks. To ensure information freshness for IoT devices and reduce UAVs’ energy consumption, we minimize the average Age of Information (AoI) of IoT devices by jointly optimizing the energy harvesting (EH) and data collection time for IoT devices, the selection of data collection points (DCPs), DCP-IoT associations, and task assignment, flight speed, and trajectories of UAVs, subject to the limited endurance of UAVs. As this problem is nonconvex, we propose a novel DCP association and trajectory-planning scheme that seeks age-optimal solutions through an iterative three-step process. First, we calculate the EH and data collection time for IoT devices using Karush–Kuhn–Tucker (KKT) conditions. Then, we introduce an optimal hovering time allocation-based affinity propagation (OHTAP) clustering algorithm to determine optimal DCP locations and establish DCP-IoT associations. Finally, we develop two algorithms to optimize UAVs’ trajectories: an improved partheno-genetic algorithm with enhancement mechanisms (EIPGA) and a hybrid algorithm that combines improved MinMax k-means clustering with EIPGA. Numerical results confirm that our scheme consistently outperforms benchmark schemes in AoI performance and solution stability across diverse scenarios.
- Published
- 2025
- Full Text
- View/download PDF
7. Effects of Different Straw Return Modes on Soil Carbon, Nitrogen, and Greenhouse Gas Emissions in the Semiarid Maize Field
- Author
-
Lu Hua, Zhenxing Yang, Wenqian Li, Yidong Zhao, Jie Xia, Wenyi Dong, and Baoqing Chen
- Subjects
deep burial straw return ,dissolved organic carbon ,nitrate nitrogen ,maize grain ,greenhouse gas emissions ,Botany ,QK1-989 - Abstract
Returning straw to the field is a crucial practice for enhancing soil quality and increasing efficient use of secondary crop products. However, maize straw has a higher carbon-to-nitrogen ratio compared to other crops. This can result in crop nitrogen loss when the straw is returned to the field. Therefore, it is crucial to explore how different methods of straw return affect maize (Zea mays L.) farmland. In this study, a field experiment was performed with three treatments (I, no straw returned, CK; II, direct straw return, SR; and III, straw returned in deep furrows, ISR) to explore the effects of the different straw return modes on soil carbon and nitrogen content and greenhouse gas emissions. The results indicated that the SR and ISR treatments increased the dissolved organic carbon (DOC) content in the topsoil (0–15 cm). Additionally, the ISR treatment boosted the contents of total nitrogen (TN), nitrate nitrogen (NO3−-N), ammonium nitrogen (NH4+-N), dissolved organic nitrogen (DON), and DOC in the subsurface soil (15–30 cm) compared with CK. When it comes to greenhouse gas emissions, the ISR treatment led to an increase in CO2 emissions. However, SR and ISR reduced N2O emissions, with ISR showing a more pronounced reduction. The ISR treatment significantly increased leaf and grain biomass compared to CK and SR. The correlation analyses showed that the yield was positively correlated with soil DOC, and soil greenhouse gas emission was correlated with soil NO3−-N. The ISR technology has great potential in sequestering soil organic matter, improving soil fertility, and realizing sustainable agricultural development.
- Published
- 2024
- Full Text
- View/download PDF
8. Joint Spatio-Temporal-Frequency Representation Learning for Improved Sound Event Localization and Detection
- Author
-
Baoqing Chen, Mei Wang, and Yu Gu
- Subjects
sound event localization and detection ,spatial audio ,spatio-temporal-frequency fusion ,time-frequency alignment ,SimAM ,Chemical technology ,TP1-1185 - Abstract
Sound event localization and detection (SELD) is a crucial component of machine listening that aims to simultaneously identify and localize sound events in multichannel audio recordings. This task demands an integrated analysis of spatial, temporal, and frequency domains to accurately characterize sound events. The spatial domain pertains to the varying acoustic signals captured by multichannel microphones, which are essential for determining the location of sound sources. However, the majority of recent studies have focused on time-frequency correlations and spatio-temporal correlations separately, leading to inadequate performance in real-life scenarios. In this paper, we propose a novel SELD method that utilizes the newly developed Spatio-Temporal-Frequency Fusion Network (STFF-Net) to jointly learn comprehensive features across spatial, temporal, and frequency domains of sound events. The backbone of our STFF-Net is the Enhanced-3D (E3D) residual block, which combines 3D convolutions with a parameter-free attention mechanism to capture and refine the intricate correlations among these domains. Furthermore, our method incorporates the multi-ACCDOA format to effectively handle homogeneous overlaps between sound events. During the evaluation, we conduct extensive experiments on three de facto benchmark datasets, and our results demonstrate that the proposed SELD method significantly outperforms current state-of-the-art approaches.
- Published
- 2024
- Full Text
- View/download PDF
9. Definitive concurrent chemoradiotherapy with docetaxel plus cisplatin versus 5-fluorouracil plus cisplatin in patients with esophageal squamous cell carcinoma: long-term follow-up results of a phase II randomized controlled trial
- Author
-
Hui Jiang, Kanjiebubi Makelike, Baoqing Chen, Mian Xi, Qiaoqiao Li, Yonghong Hu, and Yujia Zhu
- Subjects
Esophageal cancer ,Chemotherapy ,Radiotherapy ,Esophagus ,Recurrence ,Salvage treatment ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Definitive radiotherapy plus concurrent chemotherapy has been a standard treatment for esophagus patients who are unfit to undergo surgery. However, there are a variety of concurrent chemotherapy regimens with varying efficacy. In this phase II prospective study, we compared the efficacy and toxicity of DP (docetaxel and cisplatin) and PF (cisplatin and 5-fluorouracil) regimens with concurrent chemoradiotherapy (CCRT) in patients with esophageal squamous cell carcinoma (ESCC) and analyzed the 5-year overall survival (OS) and progression free survival (PFS). We also summarized the salvage treatments and late toxicities. Methods We enrolled 86 patients with clinical stage II-IVA from the Sun Yat-sen University Cancer Center. The patients were divided into two groups: PF group (41) and DP group (45). Statistics were analyzed using SPSS version 19.0. Results The 5-year OS rates were 62.9% ± 7.6% in PF group, and 52.7% ± 7.5% in DP group (P = 0.131), respectively. The 5-year PFS rates were 43.9% ± 7.8% for PF group, and 40.0% ± 7.3% for DP group (P = 0.398), respectively. Sixteen patients in the DP group and thirteen in the PF group received salvage treatment. For those patients with local residual or local recurrent disease, the median survival time after salvage treatment was 13.5 months and the 1, 2, and 3-year survival rates were 79.0%, 50.3%, and 43.1%, respectively. For all patients, thirteen (15.1%) had Grade 2 late cardiac toxicities. One patient had Grade 2 pleural effusion and required diuretic. Most patients with pneumonia are mild, and only one patient in PF group had Grade 2 pneumonia. One patient in the DP group developed tracheoesophageal fistula. Conclusions The 5-year follow-up confirmed that definitive CCRT with the DP regimen did not improve the treatment response, OS, or PFS in patients with ESCC compared to the PF regimen. The PF regimen remains the standard regimen for definitive CCRT for patients with locally advanced ESCC. Long-term follow-up also suggested that appropriate and active salvage treatment has a survival benefit for some patients, and late cardiopulmonary toxicities should be noticed during follow-up. Trial registration The trial was registered at https://clinicaltrials.gov (ClinicalTrials.gov Identifier: NCT 02969473, October 2010).
- Published
- 2023
- Full Text
- View/download PDF
10. Phase I study of cisplatin and nanoparticle albumin‐bound‐paclitaxel combined with concurrent radiotherapy in locally advanced esophageal squamous cell carcinoma
- Author
-
Hui Jiang, Qiaoqiao Li, Baoqing Chen, Mian Xi, Kanjiebubi Makelike, Shiliang Liu, Yonghong Hu, and Yujia Zhu
- Subjects
dose escalation ,esophageal squamous cell carcinoma ,nanoparticle albumin‐bound‐paclitaxel ,phase I study ,radiotherapy ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background This phase I study aimed to assess the safety, dose‐limiting toxicity (DLT), maximum tolerated dose (MTD) and preliminary effect of nanoparticle albumin‐bound (nab)‐paclitaxel in combination with concurrent chemoradiotherapy in patients with locally advanced esophageal squamous cell carcinoma (ESCC). Methods Patients with locally advanced ESCC who were ineligible or refused surgery were enrolled. Nab‐paclitaxel (60 mg/m2, 75 mg/m2, and 90 mg/m2) and cisplatin (25 mg/m2) were administered intravenously weekly on days 1, 8, 15, 22, and 29 on the basis of the 3 + 3 dose escalation method. The total dose of radiation was 50–64 Gy. The primary endpoint was the safety of chemotherapy. Results The study enrolled 12 patients across three dose levels. No treatment‐related deaths occurred. One patient in the 60 mg/m2 dose level occurred dose‐limiting Grade 3 febrile neutropenia. No DLT was found in the 90 mg/m2 dose level thus the MTD was not reached. The phase II study's recommended dose was 75 mg/m2 based on the available preclinical and clinical data including pharmacokinetics, pharmacodynamics, efficacy, and toxicity. The frequent hematologic toxicities were leukocytopenia (Grade 1–2 of 66.7% and Grade 3–4 of 33.3%), neutropenia (Grade 1–2 of 91.7% and Grade 3–4 of 8.3%). Nonhematologic toxicities were mild and manageable. Overall response rate (ORR) of all patients achieved 100%. Conclusions Weekly schedule of cisplatin and nab‐paclitaxel in combination with concurrent radiotherapy showed manageable toxicities and promising antitumor activity in patients with locally advanced ESCC. The recommended dose of nab‐paclitaxel for further studies is 75 mg/m2.
- Published
- 2023
- Full Text
- View/download PDF
11. M1A and m7G modification-related genes are potential biomarkers for survival prognosis and for deciphering the tumor immune microenvironment in esophageal squamous cell carcinoma
- Author
-
Ruixi Wang, Xingyuan Cheng, Dongmei Chi, Shiliang Liu, Qiaoqiao Li, Baoqing Chen, and Mian Xi
- Subjects
Methyladenosine ,Esophageal squamous cell carcinoma ,Prognostic biomarker ,Treatment response ,Immune cell infiltration ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Esophageal squamous cell carcinoma (ESCC) is the most common esophageal malignancy, and RNA methylation has been reported to be involved in the tumorigenesis of ESCC. However, no study has explored methylation modifications in m1A and m7G as prognostic markers for survival prediction in ESCC. Methods Public gene-expression data and clinical annotation of 254 patients obtained from The Cancer Genome Atlas and the Gene Expression Omnibus databases were analyzed to identify potential consensus clusters of m1A and m7G modification-related genes. The RNA-seq of 20 patients in Sun Yat-Sen University Cancer Center was used as the validation set. Following screening for relevant differentially expressed genes (DEGs) and enrichment pathways were elucidated. DEGs were used to construct risk models using the randomForest algorithm, and the prognostic role of the models was assessed by applying Kaplan–Meier analysis. Extent of immune cell infiltration, drug resistance, and response to cancer treatment among different clusters and risk groups were also evaluated. Results Consensus clustering analysis based on m1A and m7G modification patterns revealed three potential clusters. In total, 212 RNA methylation-related DEGs were identified. The methylation-associated signature consisting of 6 genes was then constructed to calculate methylation-related score (MRScore) and patients were dived into MRScore-high and MRScore-low groups. This signature has satisfied prognostic value for survival of ESCC (AUC = 0.66, 0.67, 0.64 for 2-, 3-, 4- year OS), and has satisfied performance in the validation SYSUCC cohort (AUC = 0.66 for 2- and 3-year OS). Significant correlation between m1A and m7G modification-related genes and immune cell infiltration, and drug resistance was also observed. Conclusions Transcriptomic prognostic signatures based on m1A and m7G modification-related genes are closely associated with immune cell infiltration in ESCC patients and have important correlations with the therapeutic sensitivity of multiple chemotherapeutic agents.
- Published
- 2023
- Full Text
- View/download PDF
12. Disclosing quantitative RT‐PCR raw data during manuscript submission: a call for action
- Author
-
Andreas Untergasser, Jan Hellemans, Michael W. Pfaffl, Jan M. Ruijter, Maurice J. B. van denHoff, Mihnea P. Dragomir, Douglas Adamoski, Sandra Martha Gomes Dias, Rui Manuel Reis, Manuela Ferracin, Emmanuel Dias‐Neto, Ian Marsh, Mikael Kubista, Muller Fabbri, Ajay Goel, Ondřej Slabý, Erik Knutsen, Baoqing Chen, Massimo Negrini, Koshi Mimori, Martin Pichler, Maria Papatriantafyllou, Simone Anfossi, Thomas D. Schmittgen, Jim Huggett, Stephen Bustin, Jo Vandesompele, George A. Calin, and for the HEROIC (tHe initiativE gRoup On qRT dIsClosure) Consortium
- Subjects
accuracy ,quantification ,RNA ,RT‐qPCR ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Accuracy and transparency of scientific data are becoming more and more relevant with the increasing concern regarding the evaluation of data reproducibility in many research areas. This concern is also true for quantifying coding and noncoding RNAs, with the remarkable increase in publications reporting RNA profiling and sequencing studies. To address the problem, we propose the following recommendations: (a) accurate documentation of experimental procedures in Materials and methods (and not only in the supplementary information, as many journals have a strict mandate for making Materials and methods as visible as possible in the main text); (b) submission of RT‐qPCR raw data for all experiments reported; and (c) adoption of a unified, simple format for submitted RT‐qPCR raw data. The Real‐time PCR Data Essential Spreadsheet Format (RDES) was created for this purpose.
- Published
- 2023
- Full Text
- View/download PDF
13. Progress in the Rapid Detection of Foodborne Pathogens Based on Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/CRISPR-Associated Protein (Cas)
- Author
-
KOU Xiuying, ZHOU Baoqing, CHEN Ling, DAI Jingsha, ZHANG Jumei, WU Qingping
- Subjects
clustered regularly interspaced short palindromic repeats (crispr)/crispr-associated protein ,foodborne pathogens ,trans-cleavage ,rapid detection technology ,Food processing and manufacture ,TP368-456 - Abstract
The early screening and rapid detection of foodborne pathogens is critical to food safety and public health. However, the traditional detection method is cumbersome, time-consuming and laborious, and cannot meet the requirement of rapid detection. CRISPR/Cas, composed of clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-associated protein (Cas), is an immune system widely present in bacteria and archaea, which provides a novel pathway for low-cost, rapid, specific and sensitive detection of foodborne pathogens due to its efficient and specific sequence recognition and cleavage activity. This review article introduces the principle, mechanism and development of the CRISPR/Cas system, and summarizes the latest progresses in the rapid detection of foodborne pathogens based on the CRISPR/Cas system combined with different result reporting methods in recent years. Its advantages, limitations and future development prospects are also discussed.
- Published
- 2023
- Full Text
- View/download PDF
14. A phase II clinical trial of toripalimab combined with neoadjuvant chemoradiotherapy in locally advanced esophageal squamous cell carcinoma (NEOCRTEC1901)Research in context
- Author
-
Rui Chen, Qianwen Liu, Qiaoqiao Li, Yujia Zhu, Lei Zhao, Shiliang Liu, Baoqing Chen, Mengzhong Liu, Yonghong Hu, Ting Lin, Jibin Li, Jiyang Chen, Yingxin Lv, Jianhua Fu, Mian Xi, and Hong Yang
- Subjects
Esophageal squamous cell carcinoma ,Toripalimab ,Neoadjuvant chemoradiotherapy ,Pathological complete response ,Safety ,Medicine (General) ,R5-920 - Abstract
Summary: Background: To evaluate the efficacy and safety of toripalimab combined with neoadjuvant chemoradiotherapy (NCRT) for locally advanced esophageal squamous cell carcinoma (ESCC). Methods: In this single arm, phase II trial, 44 ESCC patients were enrolled from December 2019 to July 2021 at Sun Yat-sen University Cancer Center (Guangzhou, China). All patients received concurrent radiotherapy (44 Gy in 20 fractions), chemotherapy (paclitaxel 50 mg/m2 and cisplatin 25 mg/m2 on days 1, 8, 15, and 22), and toripalimab (240 mg on days 1 and 22). Within 6–8 weeks of neoadjuvant treatment, patients underwent surgery. The results of the study patients were compared with those of 86 matched patients between July 2015 and March 2022. The primary endpoint was pathological complete response (pCR) rate, and the secondary endpoints were treatment-related adverse events and R0 rates. This trail was registered with ClinicalTrails.gov, NCT04006041. Findings: All patients received neoadjuvant treatment, and 42 completed esophagectomy. Of the 42 patients, 21 (50%; 95% CI 35–65) achieved pCR and 2 (5%) patients were ypT0N+. The R0 resection rate was 98% (41/42). Nine (20%) of 44 patients had grade 3/4 adverse events. Among the perioperative complications (n = 42), anastomotic leakage occurred in five cases (12%), tracheal fistula in three cases (7%), and postoperative death in one case (2%) due to tracheal fistula. Compared with the control cohort, the pCR rate of the study group was higher but without significant difference (50% vs. 36%, P = 0.19). Interpretation: Toripalimab combined with NCRT failed to show significantly better pCR rate than historical data. Nevertheless, considering the signs of efficacy and acceptable safety of this regimen, further evaluation in phase III randomized trials might be warranted. Funding: National Natural Science Foundation of China.
- Published
- 2023
- Full Text
- View/download PDF
15. Targeting non-coding RNAs to overcome cancer therapy resistance
- Author
-
BaoQing Chen, Mihnea P. Dragomir, Chen Yang, Qiaoqiao Li, David Horst, and George A. Calin
- Subjects
Medicine ,Biology (General) ,QH301-705.5 - Abstract
Abstract It is now well known that non-coding RNAs (ncRNAs), rather than protein-coding transcripts, are the preponderant RNA transcripts. NcRNAs, particularly microRNAs (miRNAs), long non-coding RNAs (lncRNAs), and circular RNAs (circRNAs), are widely appreciated as pervasive regulators of multiple cancer hallmarks such as proliferation, apoptosis, invasion, metastasis, and genomic instability. Despite recent discoveries in cancer therapy, resistance to chemotherapy, radiotherapy, targeted therapy, and immunotherapy continue to be a major setback. Recent studies have shown that ncRNAs also play a major role in resistance to different cancer therapies by rewiring essential signaling pathways. In this review, we present the intricate mechanisms through which dysregulated ncRNAs control resistance to the four major types of cancer therapies. We will focus on the current clinical implications of ncRNAs as biomarkers to predict treatment response (intrinsic resistance) and to detect resistance to therapy after the start of treatment (acquired resistance). Furthermore, we will present the potential of targeting ncRNA to overcome cancer treatment resistance, and we will discuss the challenges of ncRNA-targeted therapy—especially the development of delivery systems.
- Published
- 2022
- Full Text
- View/download PDF
16. Efficacy and safety of abrocitinib for moderate-to-severe atopic dermatitis in adolescents and adults: Meta-analysis
- Author
-
Ling Li, Jiajun Yu, Baoqing Chen, Ying Guo, and Yufeng Yang
- Subjects
abrocitinib ,atopic dermatitis ,dupilumab ,meta-analysis ,adolescents’ ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Objective: This study aims to investigate the safety and efficacy of abrocitinib in treating moderate-to-severe AD in adolescents and adults.Methods: Pubmed, Cochrane, Embase, and Web of science data base were searched from inception to 9 August 2022. All randomized controlled trials (RCTs) evaluating the efficacy and safety of abrocitinib in moderate to severe AD were included in the meta-analysis.Results: This meta-analysis comprised 7 studies and found that 100 mg or 200 mg of abrocitinib significantly improved IGA {[RR = 2.44, 95% CI (1.93–3.08)] [RR = 3.16, 95% CI (2.52–3.96)]} and EASI-75{[RR = 2.18, 95%CI (1.78–2.67)] [RR = 3.04, 95%CI (2.22–4.16)]} responses compared to placebo. Following that, the population was divided into adolescent and adult groups. The abrocitinib improved IGA, EASI-75 responses, and it was still superior to placebo in both the adolescent and the adult groups. PP-NRS4 response index demonstrated that abrocitinib had a greater effect than placebo at 100 mg [RR = 2.22, 95% CI 1.80–2.72] and 200 mg [RR = 3.28, 95% CI 2.59–4.17]. Abrocitinib improved PSAAD, POEM, DLQI, CDLQI, and HADS more than a placebo.Conclusion: In conclusion, this meta-analysis preliminarily demonstrated that abrocitinib had higher efficacy and safety in the treatment of moderate-to-severe AD in adolescents and adults. In addition, abrocitinib could rapidly relieve itching, and effectively improve symptoms and signs, with a greater effect at the dosage of 200 mg than 100 mg.
- Published
- 2023
- Full Text
- View/download PDF
17. Bevacizumab-induced esophageal pleural fistula during maintenance therapy without radiation in lung cancer
- Author
-
Ting Wang, Asmitananda Thakur, and Baoqing Chen
- Subjects
Bevacizumab ,Lung cancer ,Esophageal pleural fistula ,Case report ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Esophageal pleural fistula (EPF) is a rare but fatal complication associated with bevacizumab use; however, cases reports of EPF caused by bevacizumab have not been previously published. Case presentation A 66-year-old male patient diagnosed with stage IV lung adenocarcinoma on April 24, 2020 received 6 cycles of platinum-containing dual chemotherapy combined with bevacizumab followed by three cycles of bevacizumab monotherapy. Five days before admission, he experienced chest tightness, dyspnea, and right chest pain. Bed-side X-ray examination revealed a massive right hydrothorax, and food was found in the extracted pleural effusion. EPF was further confirmed by upper gastrointestinal radiography after oral administration of iohexol. The patient underwent jejunostomy as the distal esophagus could not be identified on gastroscopy, and eventually died of septic shock on January 16, 2021. Conclusions It is necessary to pay attention to EPF during bevacizumab use in patients with or without risk factors.
- Published
- 2021
- Full Text
- View/download PDF
18. Association of proton pump inhibitor use with survival outcomes in cancer patients treated with immune checkpoint inhibitors: a systematic review and meta-analysis
- Author
-
Baoqing Chen, Chen Yang, Mihnea P. Dragomir, Dongmei Chi, Wenyan Chen, David Horst, George A. Calin, and Qiaoqiao Li
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Background: Proton pump inhibitors (PPIs) have been shown to regulate the gut microbiome and affect the response to immune checkpoint inhibitors (ICIs). Contradictory results on survival have been observed in patients concomitantly treated with ICIs and PPIs. We performed a systematic review and meta-analysis to determine the association between PPI use and survival outcomes in ICI-treated cancer patients. Methods: EMBASE, MEDLINE/PubMed, Cochrane Library databases, and major oncology conference proceedings were searched. Studies comparing overall survival (OS) and progression-free survival (PFS) between PPI-treated and PPI-free groups of ICI-treated cancer patients were included. Data regarding study and patient characteristics, ICI and PPI treatments, and survival outcomes were extracted. Hazard ratios (HRs) with 95% confidence interval (CI) were pooled using random effects models. Subgroup meta-analyses and meta-regressions were performed to explore possible factors of heterogeneity among the studies. Results: A total of 33 studies were included, comprising 7383 ICI- and PPI-treated patients and 8574 ICI-treated and PPI-free patients. The pooled HR was 1.31 (95% CI, 1.19–1.44; p
- Published
- 2022
- Full Text
- View/download PDF
19. Effects of Biodegradable Plastic Film on Carbon Footprint of Crop Production
- Author
-
Baoqing Chen, Jixiao Cui, Wenyi Dong, and Changrong Yan
- Subjects
biodegradable plastic ,polyethylene film ,carbon footprint ,plastic film mulch ,greenhouse gas emissions ,Agriculture (General) ,S1-972 - Abstract
Polyethylene film mulch (PM) is a kind of widely used technology to improve crop yields worldwide; however, because of a problem related with plastic residual pollution, it has gradually been replaced by biodegradable plastic film mulch (BDP). Although BDP has helped to solve the plastic residual pollution, its consequences in terms of greenhouse gas (GHG) emissions have rarely been revealed. Related knowledge is important for forming low-carbon development strategies for the plastic industry and agriculture. The objective of this study is to evaluate the influence of BDP on GHG emissions at different stages of its life cycle, and determine whether replacing polyethylene (PE) film with BDP film is a helpful way to reduce national GHG emissions. The results of this study suggest that the application of BDP improved the GHG emissions associated with agricultural inputs, but induced lower GHG emissions at the growing stage and the waste disposal stage, and resulted in lower total area-scale GHG emissions. Compared to the no mulch (NM) cultivation system, the yield-scale carbon footprint was reduced in both the PM and BDP cultivation systems, which meant that both PM and BDP produced lower GHG emissions than NM for the production of the same amount of grain. It was concluded that BDP is not only a measure to control the problem of plastic residue pollution in agriculture, but it can also mitigate the GHG emissions.
- Published
- 2023
- Full Text
- View/download PDF
20. Neoadjuvant PD-1 Blockade Combined With Chemotherapy Followed by Concurrent Immunoradiotherapy in Locally Advanced Anal Canal Squamous Cell Carcinoma Patients: Antitumor Efficacy, Safety and Biomarker Analysis
- Author
-
WeiWei Xiao, Yan Yuan, SuiHai Wang, Zhidong Liao, PeiQiang Cai, BaoQing Chen, Rong Zhang, Fang Wang, ZhiFan Zeng, and YuanHong Gao
- Subjects
locally advanced ,anal canal squamous cell carcinoma ,neoadjuvant ,PD-1 blockade ,PD-L1 ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundAnal canal squamous cell carcinoma (ACSCC) is an exceedingly rare malignant neoplasm with challenges in sphincter preservation, treatment toxicities and long-term survival. Little is known concerning the activity of PD-1 antibodies in locally advanced ACSCC. This study reports on the efficacy and toxicities of a neoadjuvant PD-1 blockade combined with chemotherapy followed by concurrent immunoradiotherapy in ACSCC patients, and describes biomarkers expression and mutation signatures.MethodsIn this cohort study, patients were treated as planned, including four cycles of neoadjuvant PD-1 antibody toripalimab combined with docetaxol and cisplatin, followed by radiotherapy and two cycles of concurrent toripalimab. Multiplex immunofluorescence staining (mIHC) with PD-L1, CD8, CD163, Pan-Keratin and DAPI was performed with the pretreatment tumor tissue. Whole exome sequencing was performed for the primary tumor and peripheral blood mononuclear cells. The primary endpoint was the complete clinical response (cCR) rate at 3 months after overall treatment. Acute and late toxicities graded were assessed prospectively.ResultsFive female patients with a median age of 50 years old (range, 43-65 years old), finished treatment as planned. One patient had grade 3 immune related dermatitis. Two patients had grade 3 myelosuppression during neoadjuvant treatment. No severe radiation-related toxicities were noted. Four patients with PD-L1 expression >1% achieved a cCR after neoadjuvant treatment. and the other patient with negative PD-L1 expression also achieved a cCR at 3 months after radiotherapy. All the patients were alive and free from disease and had a normal quality of life, with 19.6-24 months follow up. Inconsistent expression of PD-L1 and CD163 was detected in 3 and 5 patients, respectively. TTN, POLE, MGAM2 were the top mutation frequencies, and 80 significant driver genes were identified. Pathway analysis showed enrichment of apoptosis, Rap1, Ras, and pathways in cancer signaling pathways. Eight significantly deleted regions were identified.ConclusionsThis small cohort of locally advanced ACSCC patients had quite satisfactory cCR and sphincter preservation rate, after neoadjuvant PD-1 antibody toripalimab combined with chemotherapy followed by concurrent immunoradiotherapy, with mild acute and long-term toxicities.
- Published
- 2022
- Full Text
- View/download PDF
21. Radiotherapy for small cell carcinoma of the esophagus: outcomes and prognostic factors from a retrospective study
- Author
-
Baoqing Chen, Han Yang, Huali Ma, Qiaoqiao Li, Bo Qiu, Yonghong Hu, and Yujia Zhu
- Subjects
Small cell carcinoma of esophagus ,Radiation therapy ,Chemotherapy ,IMRT ,Prognosis ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Small cell carcinoma of the esophagus (SCCE) is characterized by its progressive feature and poor prognosis. There is no consensus on a standard therapeutic modality for SCCE. In this study, we aimed to characterize the outcomes of primary SCCE patients treated by radiation therapy as part of treatment and investigate prognostic factors. Methods We retrospectively analyzed the data of 42 SCCE patients who were treated by RT as part of treatment at the Sun Yat-sen University Cancer Center from 2001 to 2014. The Kaplan-Meier and log-rank method were used to analyze survival. Cox’s hazard regression model was applied to determine prognostic factors. Results Of the 42 enrolled patients, 25 had limited disease (LD) and 17 with extensive disease (ED). The overall response rate (CR + PR) was 60.0% (21/35). The median overall survival time (OS) for whole and LD group were 12.9 and 36.8 months. The 1-, 3- and 5-year OS rates of the whole cohort were 64.9, 31.3, and 13.9%, respectively. OS was significantly longer in patients with ECOG performance score (ECOG PS)
- Published
- 2019
- Full Text
- View/download PDF
22. Two-dimensional monitoring of soil water content in fields with plastic mulching using electrical resistivity tomography.
- Author
-
Baoqing Chen, Sarah Garré, Haitao Liu, Changrong Yan, Enke Liu, Daozhi Gong, and Xurong Mei
- Published
- 2019
- Full Text
- View/download PDF
23. Key questions about the checkpoint blockade-are microRNAs an answer?
- Author
-
Mihnea Dragomir, Baoqing Chen, Xiao Fu, and George A. Calin
- Subjects
MicroRNA ,PD-1 ,PD-L1 ,CTLA-4 ,checkpoint inhibitors ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
The introduction of immune-checkpoint blockade in the cancer therapy led to a paradigm change of the management of late stage cancers. There are already multiple FDA approved checkpoint inhibitors and many other agents are undergoing phase 2 and early phase 3 clinical trials. The therapeutic indication of immune checkpoint inhibitors expanded in the last years, but still remains unclear who can benefit. MicroRNAs are small RNAs with no coding potential. By complementary pairing to the 3' untranslated region of messenger RNA, microRNAs exert posttranscriptional control of protein expression. A network of microRNAs directly and indirectly controls the expression of checkpoint receptors and several microRNAs can target multiple checkpoint molecules, mimicking the therapeutic effect of a combined immune checkpoint blockade. In this review, we will describe the microRNAs that control the expression of immune checkpoints and we will present four specific issues of the immune checkpoint therapy in cancer: (1) imprecise therapeutic indication, (2) difficult response evaluation, (3) numerous immunologic adverse-events, and (4) the absence of response to immune therapy. Finally, we propose microRNAs as possible solutions for these pitfalls. We consider that in the near future microRNAs could become important therapeutic partners of the immune checkpoint therapy.
- Published
- 2018
- Full Text
- View/download PDF
24. Management of metastatic bone disease of melanoma.
- Author
-
Wenyan Chen, Chen Yang, Biqi Chen, Mian Xi, Baoqing Chen, and Qiaoqiao Li
- Published
- 2024
- Full Text
- View/download PDF
25. Bevacizumab-induced esophageal pleural fistula during maintenance therapy without radiation in lung cancer
- Author
-
Asmitananda Thakur, Baoqing Chen, and Ting Wang
- Subjects
Male ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Lung Neoplasms ,Bevacizumab ,Pleural effusion ,medicine.medical_treatment ,Adenocarcinoma of Lung ,Esophageal Fistula ,Diseases of the respiratory system ,Antineoplastic Agents, Immunological ,Fatal Outcome ,Maintenance therapy ,Case report ,medicine ,Humans ,Lung cancer ,Aged ,RC705-779 ,business.industry ,medicine.disease ,Surgery ,Jejunostomy ,Hydrothorax ,Pleura ,Adenocarcinoma ,Esophageal pleural fistula ,Complication ,business ,medicine.drug - Abstract
Background Esophageal pleural fistula (EPF) is a rare but fatal complication associated with bevacizumab use; however, cases reports of EPF caused by bevacizumab have not been previously published. Case presentation A 66-year-old male patient diagnosed with stage IV lung adenocarcinoma on April 24, 2020 received 6 cycles of platinum-containing dual chemotherapy combined with bevacizumab followed by three cycles of bevacizumab monotherapy. Five days before admission, he experienced chest tightness, dyspnea, and right chest pain. Bed-side X-ray examination revealed a massive right hydrothorax, and food was found in the extracted pleural effusion. EPF was further confirmed by upper gastrointestinal radiography after oral administration of iohexol. The patient underwent jejunostomy as the distal esophagus could not be identified on gastroscopy, and eventually died of septic shock on January 16, 2021. Conclusions It is necessary to pay attention to EPF during bevacizumab use in patients with or without risk factors.
- Published
- 2021
26. ASO Visual Abstract: Clinical and Dosimetric Predictors for Postoperative Cardiopulmonary Complications in Patients with Esophageal Squamous Cell Carcinoma Receiving Neoadjuvant Chemoradiotherapy and Surgery
- Author
-
Zhaohui Liang, Kongjia Luo, Yuting Wang, Qiuli Zeng, Xiuzhen Ling, Sifen Wang, Mihnea P. Dragomir, Qiaoqiao Li, Hong Yang, Mian Xi, and Baoqing Chen
- Subjects
Postoperative Complications ,Oncology ,Esophageal Neoplasms ,Patients ,Humans ,Surgery ,Esophageal Squamous Cell Carcinoma ,Radiometry ,Neoadjuvant Therapy - Published
- 2022
27. Plastic mulch stimulates denitrification by interaction between soil environment and denitrifying bacteria
- Author
-
Wenyi Dong, Zhe Zhang, Baoqing Chen, Dongbao Sun, and Enke Liu
- Subjects
Soil Science ,Plant Science - Published
- 2022
- Full Text
- View/download PDF
28. Real-time estimate and control contour errors for five-axis local smoothed toolpaths based on airthoid splines
- Author
-
Xiaoyong Huang, Baoqing Chen, Xiaoqing Tian, Shan Chen, Daoyang Yu, Jiang Han, and Xuesong Mei
- Subjects
Control and Systems Engineering ,Mechanical Engineering ,Industrial and Manufacturing Engineering ,Software ,Computer Science Applications - Abstract
Five-axis linear commands are blended as the local smoothed toolpaths by inserting clothoid and airthoid splines at corners in five-axis CNC machining. The contour error is the bottleneck to achieve the precise dimension of the machined parts, when following the smoothed toolpaths. This paper presents a contour error estimation and control method for the five-axis smoothed toolpaths with airthoid splines, according to the geometric characteristics of the toolpaths. The tool-tip contour error is analytically calculated based on the expression of the smoothed toolpaths. Consequently, the tool-orientation contour error is obtained by synchronizing the tool-orientation contour point with the tool-tip item based on the motion time through the designed time scale coefficient, when the toolpaths are scheduled by the time-synchronization scheme. Furthermore, a contour error compensation strategy is constructed to adaptively determine the compensator gain. It can be qualified to maximally eliminate the contour errors and steadily hold the control stability of the feed drives, in spite of the modeling error between the nominal and actual control models. The simulation and experiment results show that the estimation algorithm has the higher accuracy than traditional methods, and the compensation strategy effectively eliminates the five-axis contour error.
- Published
- 2022
- Full Text
- View/download PDF
29. Recent Advances in Combination of Immunotherapy and Chemoradiotherapy for Locally Advanced Esophageal Squamous Cell Carcinoma
- Author
-
Ruixi Wang, Shiliang Liu, Baoqing Chen, and Mian Xi
- Subjects
Cancer Research ,Oncology - Abstract
Esophageal cancer has a high mortality rate and a poor prognosis, with more than one-third of patients receiving a diagnosis of locally advanced cancer. Esophageal squamous cell carcinoma (ESCC) is the dominant histological subtype of esophageal cancer in Asia and Eastern Europe. Although neoadjuvant or definitive chemoradiotherapy (CRT) has been the standard treatment for locally advanced ESCC, patient outcomes remain unsatisfactory, with recurrence rates as high as 30–50%. The combination of immune checkpoint inhibitors (ICIs) and CRT has emerged as a novel strategy to treat esophageal cancer, and it may have a synergistic action and provide greater efficacy. In the phase III CheckMate-577 trial, one year of adjuvant nivolumab after neoadjuvant CRT improved disease-free survival in patients with residual disease on pathology. Moreover, several phase I and II studies have shown that ICIs combined with concurrent CRT may increase the rate of pathologic complete response for resectable ESCC, but they lack long-term follow-up results. In unresectable cases, the combination of camrelizumab and definitive CRT showed promising results against ESCC in a phase Ib trial. Phase III randomized trials are currently ongoing to investigate the survival benefits of ICIs combined with neoadjuvant or definitive CRT, and they will clarify the role of immunotherapy in locally advanced ESCC. Additionally, valid biomarkers to predict tumor response and survival outcomes need to be further explored.
- Published
- 2022
30. Oral maintenance therapy using apatinib combined with S-1/capecitabine for esophageal squamous cell carcinoma with residual disease after definitive chemoradiotherapy
- Author
-
Dongmei Chi, Kunhao Bai, Yujia Zhu, Su Ping Guo, Qiaoqiao Li, Baoqing Chen, Yonghong Hu, and Huali Ma
- Subjects
Adult ,Male ,Aging ,medicine.medical_specialty ,Esophageal Neoplasms ,Combination therapy ,Pyridines ,maintenance therapy ,Administration, Oral ,Gastroenterology ,Maintenance Chemotherapy ,Capecitabine ,chemistry.chemical_compound ,Maintenance therapy ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,medicine ,Humans ,Apatinib ,Adverse effect ,Aged ,Retrospective Studies ,Tegafur ,business.industry ,Retrospective cohort study ,S-1 ,Chemoradiotherapy ,Cell Biology ,Middle Aged ,esophageal squamous cell carcinoma ,Squamous carcinoma ,Drug Combinations ,Oxonic Acid ,chemistry ,Female ,business ,apatinib ,Research Paper ,medicine.drug - Abstract
Background A substantial number of patients with esophageal squamous cell carcinoma (ESCC) do not achieve complete remission after definitive concurrent chemoradiotherapy (dCRT). We performed this retrospective study to evaluate the efficacy and safety of apatinib combined with S-1/capecitabine as the oral maintenance therapy for these patients. Methods Thirty-nine ESCC patients with residual disease after dCRT were included. Patients were treated with apatinib combined with S-1 /capecitabine after dCRT. Efficacy, toxicity, and survival were analyzed. Results Of the 39 patients, 5 (12.8%) achieved a partial response and 29 (74.4%) achieved stable disease, yielding a disease control rate of 87.2%. The median progression-free survival (PFS) and overall survival (OS) were 27.5 (95%CI: 14.9 - 40.1) and 38.1 (95%CI: 31.3 - 44.8) months. Most frequent adverse events were of grade 1 to 2. Multivariate analysis revealed the occurrence of any adverse events (HR = 0.274, 95%[CI] = 0.119 - 0.630) correlated to better PFS and occurrence of proteinuria (HR = 0.108, 95%[CI] = 0.025 - 0.456) predicted better OS. Conclusion The oral combination therapy consisting of apatinib and S-1/capecitabine showed a tolerable toxicity profile and achieved satisfactory disease control in ESCC patients with residual disease after dCRT.
- Published
- 2021
- Full Text
- View/download PDF
31. ASO Author Reflections: The Prophets of Postoperative Cardiopulmonary Complications in Esophageal Squamous Cell Carcinoma Patients Receiving Trimodality Therapy
- Author
-
Zhaohui, Liang, Mihnea P, Dragomir, Mian, Xi, and Baoqing, Chen
- Subjects
Oncology ,Surgery - Published
- 2022
- Full Text
- View/download PDF
32. Clinical and Dosimetric Predictors for Postoperative Cardiopulmonary Complications in Esophageal Squamous Cell Carcinoma Patients Receiving Neoadjuvant Chemoradiotherapy and Surgery
- Author
-
Zhaohui Liang, Kongjia Luo, Yuting Wang, Qiuli Zeng, Xiuzhen Ling, Sifen Wang, Mihnea P. Dragomir, Qiaoqiao Li, Hong Yang, Mian Xi, and Baoqing Chen
- Subjects
Male ,Oncology ,Esophageal Neoplasms ,Humans ,Surgery ,Esophageal Squamous Cell Carcinoma - Abstract
Neoadjuvant chemoradiotherapy followed by esophagectomy is the standard treatment for patients with locally advanced esophageal squamous cell carcinoma (ESCC). This study explored correlations of clinical factors and dose-volume histogram (DVH) parameters with postoperative cardiopulmonary complications and predicted their risk by establishing a nomogram model.Clinical and DVH parameters of ESCC patients who underwent trimodality treatment from 2002 to 2020 were collected. Postoperative cardiopulmonary complications were recorded. Logistic regression analysis was applied, and a nomogram model was constructed. Area under the receiver operating characteristic (AUC) curve, calibration curve, and decision curve analyses were performed to evaluate the performance of the nomogram.Of the 307 ESCC patients enrolled in this study, 65 (21.2%) experienced pulmonary complications and 57 (18.6%) experienced cardiac complications. The following six risk factors were identified as independent risk factors for pulmonary complications by multivariate logistic regression analyses in the integrated model: male sex (odds ratio [OR], 3.26; 95% confidence interval [CI], 1.27-9.70; P = 0.021), post-radiation therapy (RT) forced expiratory volume in 1 s (FEV1) (OR, 0.51; 95% CI 0.28-0.90; P = 0.023), mean lung dose (MLD) (OR, 1.13; 95% CI 1.01-1.28; P = 0.041), and pre-RT monocyte (OR, 8.36; 95% CI 1.23-11.7; P = 0.03). The AUC of this integrated model was 0.705 (95% CI 0.64-0.77). The paclitaxel and cisplatin (TP) concurrent chemotherapy regimen was the independent predictor of cardiac complication (OR, 2.50; 95% CI 1.22-5.55; P = 0.016).For ESCC patients who underwent trimodality treatment, male sex, post-RT FEV1, MLD, and pre-RT monocyte were confirmed as significant predictors of postoperative pulmonary complications. A nomogram model including six risk factors was further established. The independent predictor of cardiac complication was TP concurrent chemotherapy.
- Published
- 2022
33. Efficacy, Safety, and Biomarkers of Toripalimab Combined with Definitive Chemoradiotherapy in Locally Advanced Esophageal Squamous Cell Carcinoma: A Phase II Trial (EC-CRT-001)
- Author
-
Yu-Jia Zhu, Jing Wen, Qiaoqiao Li, Lei Zhao, Shi-Liang Liu, Baoqing Chen, Yadi Yang, Sifen Wang, Yingxin Lv, Yong-Hong Hu, Meng-Zhong Liu, and Mian Xi
- Subjects
History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
- Full Text
- View/download PDF
34. The climate cost of saving water by different plastic mulching patterns
- Author
-
Baoqing Chen, Jixiao Cui, Xulun Man, Wenyi Dong, Changrong Yan, and Xurong Mei
- Subjects
Renewable Energy, Sustainability and the Environment ,Strategy and Management ,Building and Construction ,Industrial and Manufacturing Engineering ,General Environmental Science - Published
- 2022
- Full Text
- View/download PDF
35. Association of proton pump inhibitor use with survival outcomes in patients with cancer treated with immune checkpoint inhibitors: A systematic review and meta-analysis
- Author
-
BaoQing Chen, Chen Yang, Mihnea-Paul Dragomir, Dongmei Chi, Wenyan Chen, George Calin, and Qiaoqiao Li
- Subjects
Cancer Research ,Oncology - Abstract
2613 Background: Proton pump inhibitors (PPIs) were revealed to regulate gut microbiome alterations and further impact the response to immune checkpoint inhibitors (ICIs). Contradictory impacts on survival were observed in ICI-treated patients when concomitantly use PPI or not. We performed this systematic review and meta-analysis to analyze the association of PPI use with survival outcomes in ICI-treated cancer patients. Methods: EMBASE, MEDLINE/PubMed, Cochrane Library databases and major oncology conferences proceedings were comprehensively searched. Studies comparing overall survival (OS) and progression-free survival (PFS) between PPI use and PPI non-use in ICI-treated cancer patients were included. Data regarding the characteristics, ICI and PPI treatments and survival outcomes for patients were extracted. Hazard ratios (HRs) with 95% confidence intervals (CIs) were pooled using random-effect models. Subgroup meta-analyses and meta-regressions were performed to explore possible factors of heterogeneity among study results. Results: A total of 20 studies were included, comprising 2812 ICI- and PPI-treated patients and 3990 ICI-treated and PPI-free patients. The pooled HR is 1.30 (95% CI, 1.17-1.45; P
- Published
- 2022
- Full Text
- View/download PDF
36. Editing and Chemical Modifications on Non-Coding RNAs in Cancer: A New Tale with Clinical Significance
- Author
-
Ligia I. Torsin, Alexandru A Sabo, Mihnea P. Dragomir, George E. D. Petrescu, George A. Calin, Baoqing Chen, and F. M. Brehar
- Subjects
APOBEC ,RNA chemical modifications ,RNA editing ,RNA, Untranslated ,Carcinogenesis ,non-coding RNA ,Context (language use) ,Computational biology ,Review ,Biology ,Catalysis ,lcsh:Chemistry ,Inorganic Chemistry ,Circular RNA ,Neoplasms ,microRNA ,cancer ,Humans ,Physical and Theoretical Chemistry ,lcsh:QH301-705.5 ,Molecular Biology ,Spectroscopy ,long non-coding RNA ,Organic Chemistry ,circular RNA ,General Medicine ,Non-coding RNA ,Long non-coding RNA ,Computer Science Applications ,lcsh:Biology (General) ,lcsh:QD1-999 ,ADAR ,Transcriptome - Abstract
Currently, for seemingly every type of cancer, dysregulated levels of non-coding RNAs (ncRNAs) are reported and non-coding transcripts are expected to be the next class of diagnostic and therapeutic tools in oncology. Recently, alterations to the ncRNAs transcriptome have emerged as a novel hallmark of cancer. Historically, ncRNAs were characterized mainly as regulators and little attention was paid to the mechanisms that regulate them. The role of modifications, which can control the function of ncRNAs post-transcriptionally, only recently began to emerge. Typically, these modifications can be divided into reversible (i.e., chemical modifications: m5C, hm5C, m6A, m1A, and pseudouridine) and non-reversible (i.e., editing: ADAR dependent, APOBEC dependent and ADAR/APOBEC independent). The first research papers showed that levels of these modifications are altered in cancer and can be part of the tumorigenic process. Hence, the aim of this review paper is to describe the most common regulatory modifications (editing and chemical modifications) of the traditionally considered “non-functional” ncRNAs (i.e., microRNAs, long non-coding RNAs and circular RNAs) in the context of malignant disease. We consider that only by understanding this extra regulatory layer is it possible to translate the knowledge about ncRNAs and their modifications into clinical practice.
- Published
- 2021
37. High incidence of esophageal fistula on patients with clinical T4b esophageal squamous cell carcinoma who received chemoradiotherapy: A retrospective analysis
- Author
-
Qiaoqiao Li, Yonghong Hu, Kunhao Bai, Yujia Zhu, Chen Yang, Mian Xi, Baoqing Chen, Meiling Deng, Lei Zhao, and Mihnea P. Dragomir
- Subjects
medicine.medical_specialty ,Esophageal Neoplasms ,Fistula ,Gastroenterology ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Esophageal Fistula ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Retrospective Studies ,Bronchus ,business.industry ,Incidence (epidemiology) ,Incidence ,Hematology ,Odds ratio ,Chemoradiotherapy ,medicine.disease ,Confidence interval ,medicine.anatomical_structure ,Treatment Outcome ,Oncology ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Esophageal Squamous Cell Carcinoma ,Complication ,business - Abstract
Background and purpose Despite definitive chemoradiotherapy (CRT) being a recommended therapeutic method for patients with T4b esophageal squamous cell carcinoma (ESCC), treatment response and complications remain unclear. Esophageal fistula is a severe CRT-related complication when treating locally advanced ESCC, but data on risk factors that lead to esophageal fistula formation are limited. The aim of this analysis is to characterize the outcomes of T4b ESCC treated by CRT and investigate the risk factors of esophageal fistula. Materials and methods We retrospectively analyzed 136 patients with clinically unresectable T4b ESCC who were treated with CRT. Response, survival, and complication rates, particularly the rate of esophageal fistula and its associated risk factors were analyzed. Results The median progression-free survival and overall survival (OS) of all patients were 7.9 (95% confidence interval [CI]: 6.1–9.7) and 12.2 months (95% [CI]: 8.9–15.4), respectively. The Kaplan–Meier curves showed that the 3- and 5-year OS rates were 29.9% and 20.2%, respectively. The incidence rate of esophageal fistulas was 30.1%. The median OS for patients with esophageal fistula was only 6.9 (95%[CI] = 6.0–7.8) months. The risk for developing esophageal fistulas was significantly high for ulcerative-type tumors (odds ratio [OR] = 3.202; 95%[CI] = 1.036–7.850, P = 0.011) and for those invading the bronchus/trachea (OR = 3.378; 95%[CI] = 1.223–9.332, P = 0.048). Conclusion We demonstrated that CRT for T4b ESCC patients has a curative potential, despite a high incidence of esophageal fistula, which was the main cause of treatment failure. The higher risk for fistula formation were tumors with ulceration or bronchus/trachea invasion.
- Published
- 2020
38. Effects of proton pump inhibitors in cancer patients treated with immune checkpoint inhibitors: a systematic review and meta-analysis
- Author
-
Baoqing Chen, Qiaoqiao Li, Chen Yang, George A. Calin, and Mihnea P. Dragomir
- Subjects
business.industry ,Immune checkpoint inhibitors ,Meta-analysis ,Cancer research ,Medicine ,Cancer ,business ,medicine.disease - Published
- 2020
- Full Text
- View/download PDF
39. Effects of plastic mulching and plastic residue on agricultural production: A meta-analysis
- Author
-
Weili Ding, Qin Liu, Changrong Yan, Haihe Gao, Li Zhen, and Baoqing Chen
- Subjects
Environmental Engineering ,010504 meteorology & atmospheric sciences ,business.industry ,Crop yield ,Plastic film ,010501 environmental sciences ,01 natural sciences ,Pollution ,Arid ,Agronomy ,Agriculture ,Environmental Chemistry ,Environmental science ,Agricultural productivity ,Water-use efficiency ,business ,Waste Management and Disposal ,Mulch ,Cropping ,0105 earth and related environmental sciences - Abstract
China is a large agricultural country, and food security is significantly limited by the shortage of water resources. Plastic mulching technology can effectively modify the crop growth environment and crop production due to differences in climatic conditions, spatial distribution characteristics, and cropping systems and methods. In this study, a meta-analysis was conducted to quantitatively analyze the effects of plastic film mulching and residual plastic on yield and water use efficiency (WUE) of maize, wheat, potato, and cotton in China based on 266 peer-reviewed publications. The results showed that plastic mulching significantly increased crop yield (24.32%) and WUE (27.63%). Plastic mulching had the greatest effect of potato on yield (30.62%) and WUE (30.34%) in China. At a regional scale, plastic mulching performed best in Northwest China, and crop yield and WUE were influenced by film color, mulching method, and crop type. Black film and ridge row mulching were more favorable to crop growth and increased crop yield and WUE in arid areas of China. There was no significant effect on crop yield of residual plastic between 0 and 240 kg/ha, but the yield decreased significantly with increased time and residual plastic film >240 kg/ha. In conclusion, although plastic mulching can significantly increase crop yield and WUE, especially in dryland agriculture, we should also improve the technology for recovering residual plastic film to protect the environment.
- Published
- 2019
- Full Text
- View/download PDF
40. Key questions about the checkpoint blockade-are microRNAs an answer?
- Author
-
Xiao Fu, George A. Calin, Baoqing Chen, and Mihnea P. Dragomir
- Subjects
0301 basic medicine ,PD-L1 ,Cancer Research ,Review ,Bioinformatics ,lcsh:RC254-282 ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,microRNA ,PD-1 ,Medicine ,Messenger RNA ,biology ,business.industry ,Cancer ,MicroRNA ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Immune checkpoint ,3. Good health ,Blockade ,030104 developmental biology ,Oncology ,CTLA-4 ,030220 oncology & carcinogenesis ,biology.protein ,business ,checkpoint inhibitors - Abstract
The introduction of immune-checkpoint blockade in the cancer therapy led to a paradigm change of the management of late stage cancers. There are already multiple FDA approved checkpoint inhibitors and many other agents are undergoing phase 2 and early phase 3 clinical trials. The therapeutic indication of immune checkpoint inhibitors expanded in the last years, but still remains unclear who can benefit. MicroRNAs are small RNAs with no coding potential. By complementary pairing to the 3' untranslated region of messenger RNA, microRNAs exert posttranscriptional control of protein expression. A network of microRNAs directly and indirectly controls the expression of checkpoint receptors and several microRNAs can target multiple checkpoint molecules, mimicking the therapeutic effect of a combined immune checkpoint blockade. In this review, we will describe the microRNAs that control the expression of immune checkpoints and we will present four specific issues of the immune checkpoint therapy in cancer: (1) imprecise therapeutic indication, (2) difficult response evaluation, (3) numerous immunologic adverse-events, and (4) the absence of response to immune therapy. Finally, we propose microRNAs as possible solutions for these pitfalls. We consider that in the near future microRNAs could become important therapeutic partners of the immune checkpoint therapy.
- Published
- 2018
41. Modelling soil water dynamic in rain-fed spring maize field with plastic mulching
- Author
-
Enke Liu, Changrong Yan, Sarah Garré, Xurong Mei, and Baoqing Chen
- Subjects
0106 biological sciences ,Canopy ,Soil Science ,Sowing ,Soil science ,04 agricultural and veterinary sciences ,01 natural sciences ,Infiltration (hydrology) ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Soil horizon ,Richards equation ,Spatial variability ,Agronomy and Crop Science ,Mulch ,010606 plant biology & botany ,Earth-Surface Processes ,Water Science and Technology - Abstract
Numerical solution of the Richards equation with Hydrus-2D model is a low cost and fast way to get information on spatio-temporal soil water dynamics. Previous researches with Hydrus-2D have developed two different approaches to represent the rainfall infiltration in irrigated field with plastic mulching: ‘BP’ – an approach comprised by bare strip boundary and plastic strip boundary without consideration of film side infiltration;‘BP + ’- an approach comprised by bare strip and plastic strip with integrating the process of film side infiltration by increasing the rainfall infiltration amount in bare strip. Nevertheless, the performance of these approaches has not yet been evaluated in rain-fed fields. Considering much more dominant role of rainfall infiltration in rain-fed agriculture, we tested an additional approach which comprised a bare strip, plastic strip and planting hole (BPH) to take into account the effect of the rainfall canopy redistribution and film side infiltration, and we compared its performance to the two existing approaches. Results suggested BP completely failed to reproduce the soil water content (SWC) in all soil layers of plastic strip and in the deep soil layers of bare strip. BP+ overestimated the SWC in 0–20 cm of the bare strip, while the performance of BPH was acceptable in different positions. After that, we compared the soil water distribution between no-mulched field (NM) and plastic mulched field (PM) with approach BPH. Our simulation showed that the highest SWC in PM occurred near the planting hole, SWC in the center zone of plastic strip was lower, while SWC in the bare strip was lowest. PM improves the soil water availability not only in the plastic strip but also in the bare strip as compared to NM.
- Published
- 2018
- Full Text
- View/download PDF
42. Cancer-associated rs6983267 SNP and its accompanying long noncoding RNA &ITCCAT2&IT induce myeloid malignancies via unique SNP-specific RNA mutations
- Author
-
Mihnea P. Dragomir, Carlos E. Bueso-Ramos, Mustafa H. Badiwi, Cristian Rodriguez-Aguayo, Maitri Y. Shah, Daniela Nedelcu, James W. Welsh, Asha S. Multani, Riccardo Fodde, Valentina Pileczki, Srdan Verstovsek, Linda Fabris, Ioana Berindan-Neagoe, Guillermo Garcia Manero, Manuela Ferracin, Maria Angelica Cortez, Elizabeth J. Shpall, Maria Ciccone, Roxana S. Redis, Cristina Ivan, Anirban Maitra, Delia Dima, Masayoshi Shimizu, Héctor M. Alvarez, Xinna Zhang, Mihai Gagea, Pinaki P. Banerjee, Hui Ling, Leonard Girnita, Steliana Calin, M. James You, Jan Parker-Thornburg, Muharrem Muftuoglu, Katy Rezvani, Maria Inês Almeida, Hui Yang, Katrien Van Roosbroeck, Milan Radovich, Ciprian Tomuleasa, Muller Fabbri, Marcos R. Estecio, Baoqing Chen, George A. Calin, Taghi Manshouri, Pathology, Shah, Maitri Y., Ferracin, Manuela, Pileczki, Valentina, Chen, Baoqing, Redis, Roxana, Fabris, Linda, Zhang, Xinna, Ivan, Cristina, Shimizu, Masayoshi, Rodriguez-Aguayo, Cristian, Dragomir, Mihnea, Van Roosbroeck, Katrien, Almeida, Maria Ine, Ciccone, Maria, Nedelcu, Daniela, Cortez, Maria Angelica, Manshouri, Taghi, Calin, Steliana, Muftuoglu, Muharrem, Banerjee, Pinaki P., Badiwi, Mustafa H., Parker-Thornburg, Jan, Multani, Asha, Welsh, James William, Estecio, Marcos Roberto, Ling, Hui, Tomuleasa, Ciprian, Dima, Delia, Yang, Hui, Alvarez, Hector, You, M. Jame, Radovich, Milan, Shpall, Elizabeth, Fabbri, Muller, Rezvani, Katy, Girnita, Leonard, Berindan-Neagoe, Ioana, Maitra, Anirban, Verstovsek, Srdan, Fodde, Riccardo, Bueso-Ramos, Carlo, Gagea, Mihai, Manero, Guillermo Garcia, and Calin, George A.
- Subjects
0301 basic medicine ,Myeloid ,RNA ,Single-nucleotide polymorphism ,Biology ,medicine.disease ,03 medical and health sciences ,genomic DNA ,030104 developmental biology ,medicine.anatomical_structure ,Genetic ,Myelodysplastic–myeloproliferative diseases ,SDG 3 - Good Health and Well-being ,RNA editing ,Gene expression ,Genetics ,medicine ,Cancer research ,SNP ,Genetics (clinical) - Abstract
The cancer-risk-associated rs6983267 single nucleotide polymorphism (SNP) and the accompanying long noncoding RNA CCAT2 in the highly amplified 8q24.21 region have been implicated in cancer predisposition, although causality has not been established. Here, using allele-specific CCAT2 transgenic mice, we demonstrate that CCAT2 overexpression leads to spontaneous myeloid malignancies. We further identified that CCAT2 is overexpressed in bone marrow and peripheral blood of myelodysplastic/myeloproliferative neoplasms (MDS/MPN) patients. CCAT2 induces global deregulation of gene expression by down-regulating EZH2 in vitro and in vivo in an allele-specific manner. We also identified a novel non-APOBEC, non-ADAR, RNA editing at the SNP locus in MDS/MPN patients and CCAT2-transgenic mice. The RNA transcribed from the SNP locus in malignant hematopoietic cells have different allelic composition from the corresponding genomic DNA, a phenomenon rarely observed in normal cells. Our findings provide fundamental insights into the functional role of rs6983267 SNP and CCAT2 in myeloid malignancies.
- Published
- 2018
- Full Text
- View/download PDF
43. Effects of a ‘one film for 2 years’ system on the grain yield, water use efficiency and cost-benefit balance in dryland spring maize (Zea maysL.) on the Loess Plateau, China
- Author
-
Enke Liu, Changrong Yan, Baoqing Chen, Sarah Garré, and Xurong Mei
- Subjects
010504 meteorology & atmospheric sciences ,Crop yield ,Plastic film ,Soil Science ,04 agricultural and veterinary sciences ,01 natural sciences ,Tillage ,Agronomy ,Evapotranspiration ,Loess ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Water-use efficiency ,Agronomy and Crop Science ,Mulch ,Water use ,0105 earth and related environmental sciences - Abstract
‘One film for 2 years’ (PM2) has been proposed as a practice to control the residual film pollution; however, its effects on grain-yield, water-use-efficiency and cost-benefit balance in dryland sp...
- Published
- 2017
- Full Text
- View/download PDF
44. The Long Noncoding RNA CCAT2 Induces Chromosomal Instability Through BOP1-AURKB Signaling
- Author
-
Mihai Gagea, Eiji Oki, Manuela Ferracin, Recep Bayraktar, Scott Kopetz, Peng Shen, Hiroyuki Uetake, Masayoshi Shimizu, Cristina Ivan, Mireia Cruz De los Santos, Samir M. Hanash, Barbara Pardini, Bastian Fromm, Gabriele Varani, Longfei Huo, Xu Liu, Maitri Y. Shah, Jaffer A. Ajani, Mihnea P. Dragomir, David G. Menter, Jan Parker-Thornburg, Tadanobu Shimura, Koshi Mimori, Chunlai Li, Jared K. Burks, Subrata Sen, Catalin Vasilescu, Simone Anfossi, Erik Knutsen, Yuriy Gusev, Yongfeng Li, Shumei Song, Krithika Bhuvaneshwar, Ondrej Slaby, Tina Catela Ivkovic, Asha S. Multani, Lucas C. Reineke, Linda Fabris, Muddassir Syed, Hui Ling, Ajay Goel, Ayumu Taguchi, Baoqing Chen, George A. Calin, Leonard Girnita, Changyan Tang, Takatoshi Matsuyama, Hiroyuki Katayama, Chen, Baoqing, Dragomir, Mihnea P, Fabris, Linda, Bayraktar, Recep, Knutsen, Erik, Liu, Xu, Tang, Changyan, Li, Yongfeng, Shimura, Tadanobu, Ivkovic, Tina Catela, Cruz De Los Santos, Mireia, Anfossi, Simone, Shimizu, Masayoshi, Shah, Maitri Y, Ling, Hui, Shen, Peng, Multani, Asha S, Pardini, Barbara, Burks, Jared K, Katayama, Hiroyuki, Reineke, Lucas C, Huo, Longfei, Syed, Muddassir, Song, Shumei, Ferracin, Manuela, Oki, Eiji, Fromm, Bastian, Ivan, Cristina, Bhuvaneshwar, Krithika, Gusev, Yuriy, Mimori, Koshi, Menter, David, Sen, Subrata, Matsuyama, Takatoshi, Uetake, Hiroyuki, Vasilescu, Catalin, Kopetz, Scott, Parker-Thornburg, Jan, Taguchi, Ayumu, Hanash, Samir M, Girnita, Leonard, Slaby, Ondrej, Goel, Ajay, Varani, Gabriele, Gagea, Mihai, Li, Chunlai, Ajani, Jaffer A, and Calin, George A
- Subjects
Male ,0301 basic medicine ,Small interfering RNA ,Carcinogenesis ,medicine.disease_cause ,Noncoding RNA ,Mice ,chemistry.chemical_compound ,0302 clinical medicine ,Aurora kinase ,Chromosome instability ,Antineoplastic Combined Chemotherapy Protocols ,Gene expression ,Aurora Kinase B ,Intestinal Mucosa ,Gene knockdown ,Gastroenterology ,RNA-Binding Proteins ,Dextrans ,3. Good health ,Gene Expression Regulation, Neoplastic ,Organoids ,Gene Knockdown Techniques ,Cytogenetic Analysis ,Female ,RNA, Long Noncoding ,030211 gastroenterology & hepatology ,Colorectal Neoplasms ,Signal Transduction ,Colon ,Transgene ,Primary Cell Culture ,Azoxymethane ,Mice, Transgenic ,Biology ,Article ,Proto-Oncogene Proteins c-myc ,03 medical and health sciences ,Cell Line, Tumor ,Chromosomal Instability ,medicine ,Animals ,Humans ,MSS ,Hepatology ,Neoplasms, Experimental ,Aneuploidy ,Tumorigenesis ,digestive system diseases ,030104 developmental biology ,chemistry ,Drug Resistance, Neoplasm ,Cancer research - Abstract
BACKGROUND & AIMS: Chromosomal instability (CIN) is a carcinogenesis event that promotes metastasis and resistance to therapy by unclear mechanisms. Expression of the colon cancer-associated transcript 2 gene (CCAT2), which encodes a long noncoding RNA (lncRNA), associates with CIN, but little is known about how CCAT2 lncRNA regulates this cancer enabling characteristic.METHODS: We performed cytogenetic analysis of colorectal cancer (CRC) cell lines (HCT116, KM12C/SM, and HT29) overexpressing CCAT2 and colon organoids from C57BL/6N mice with the CCAT2 transgene and without (controls). CRC cells were also analyzed by immunofluorescence microscopy, gamma-H2AX, and senescence assays. CCAT2 transgene and control mice were given azoxymethane and dextran sulfate sodium to induce colon tumors. We performed gene expression array and mass spectrometry to detect downstream targets of CCAT2 lncRNA. We characterized interactions between CCAT2 with downstream proteins using MS2 pull-down, RNA immunoprecipitation, and selective 2'-hydroxyl acylation analyzed by primer extension analyses. Downstream proteins were overexpressed in CRC cells and analyzed for CIN. Gene expression levels were measured in CRC and non-tumor tissues from 5 cohorts, comprising more than 900 patients.RESULTS: High expression of CCAT2 induced CIN in CRC cell lines and increased resistance to 5-fluorouracil and oxaliplatin. Mice that expressed the CCAT2 transgene developed chromosome abnormalities, and colon organoids derived from crypt cells of these mice had a higher percentage of chromosome abnormalities compared with organoids from control mice. The transgenic mice given azoxymethane and dextran sulfate sodium developed more and larger colon polyps than control mice given these agents. Microarray analysis and mass spectrometry indicated that expression of CCAT2 increased expression of genes involved in ribosome biogenesis and protein synthesis. CCAT2 lncRNA interacted directly with and stabilized BOP1 ribosomal biogenesis factor (BOP1). CCAT2 also increased expression of MYC, which activated expression of BOP1. Overexpression of BOP1 in CRC cell lines resulted in chromosomal missegregation errors, and increased colony formation, and invasiveness, whereas BOP1 knockdown reduced viability. BOP1 promoted CIN by increasing the active form of aurora kinase B, which regulates chromosomal segregation. BOP1 was overexpressed in polyp tissues from CCAT2 transgenic mice compared with healthy tissue. CCAT2 lncRNA and BOP1 mRNA or protein were all increased in microsatellite stable tumors (characterized by CIN), but not in tumors with microsatellite instability compared with nontumor tissues. Increased levels of CCAT2 lncRNA and BOP1 mRNA correlated with each other and with shorter survival times of patients.CONCLUSIONS: We found that overexpression of CCAT2 in colon cells promotes CIN and carcinogenesis by stabilizing and inducing expression of BOP1 an activator of aurora kinase B. Strategies to target this pathway might be developed for treatment of patients with microsatellite stable colorectal tumors.
- Published
- 2020
- Full Text
- View/download PDF
45. Weekly Chemotherapy of 5‐Fluorouracil plus Cisplatin Concurrent with Radiotherapy for Esophageal Squamous Cell Carcinoma Patients with Postoperative Locoregional Recurrence: Results from a Phase II Study
- Author
-
Mian Xi, Mengzhong Liu, Yujia Zhu, Baoqing Chen, Qiaoqiao Li, Bo Qiu, Yonghong Hu, and Qiwen Li
- Subjects
Cancer Research ,medicine.medical_specialty ,Esophageal Neoplasms ,medicine.medical_treatment ,Phases of clinical research ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Antineoplastic Combined Chemotherapy Protocols ,Carcinoma ,Medicine ,Humans ,Survival rate ,business.industry ,Clinical Trial Results ,Recurrent Esophageal Squamous Cell Carcinoma ,Chemoradiotherapy ,medicine.disease ,Chemotherapy regimen ,Radiation therapy ,Survival Rate ,Oncology ,Fluorouracil ,Head and Neck Neoplasms ,030220 oncology & carcinogenesis ,Carcinoma, Squamous Cell ,030211 gastroenterology & hepatology ,Esophageal Squamous Cell Carcinoma ,Cisplatin ,Neoplasm Recurrence, Local ,business ,medicine.drug - Abstract
Lessons Learned Weekly treatment with 5-fluorouracil and cisplatin, concurrent with radiotherapy, achieved promising response rates in patients with postoperative recurrent esophageal squamous cell carcinoma. Superior toxicity results were also found. Background Concurrent chemoradiotherapy (CCRT) is one of the treatment strategies for patients with esophageal squamous cell carcinoma (ESCC) with postoperative locoregional recurrence. However, the once every 3 weeks chemotherapy regimen causes a high incidence of toxicity. The aim of this study was to evaluate the efficacy and toxicity of weekly 5-fluorouracil (5-FU) and cisplatin concurrent with radiotherapy in postoperative locoregional recurrent ESCC. Materials and Methods Patients received four weekly chemotherapy cycles of cisplatin (25 mg/m2, day 1) plus 5-FU (1,176 mg/m2, day 1–3), and concurrent with radiotherapy (50.4–60 Gy). The primary endpoint was objective response rate (ORR). Secondary objectives were toxicity, disease control rate (DCR), progression-free survival (PFS), and overall survival (OS). Results Between January 2013 and December 2015, 48 patients were enrolled. The ORR was 68.8% (12 patients with complete response, 21 patients with partial response), with DCR 68.8%. No treatment-related grade 4 adverse events occurred. Grade 3 hematologic toxicities were observed in eight (17%) patients. Grade 3 vomiting or esophagitis occurred in four (8%) patients each. The median PFS and OS were 13.94 months (95% confidence interval [CI], 0.75–51.05) and 27.43 months (95% CI, 5.278–49.58; Fig. 1). Conclusion Weekly 5-FU and cisplatin concurrent with radiotherapy achieved a promising response rate and improved toxicity in patients with postoperative locoregional recurrent ESCC.
- Published
- 2019
46. Radiotherapy for small cell carcinoma of the esophagus: outcomes and prognostic factors from a retrospective study
- Author
-
Qiaoqiao Li, Baoqing Chen, Bo Qiu, Han Yang, Yonghong Hu, Huali Ma, and Yujia Zhu
- Subjects
Male ,Esophageal Neoplasms ,medicine.medical_treatment ,Kaplan-Meier Estimate ,Gastroenterology ,Metastasis ,0302 clinical medicine ,Recurrence ,Antineoplastic Combined Chemotherapy Protocols ,Carcinoma, Small Cell ,Middle Aged ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Prognosis ,Combined Modality Therapy ,Radiation therapy ,medicine.anatomical_structure ,Treatment Outcome ,Oncology ,030220 oncology & carcinogenesis ,Cohort ,030211 gastroenterology & hepatology ,Female ,lcsh:Medical physics. Medical radiology. Nuclear medicine ,medicine.medical_specialty ,lcsh:R895-920 ,lcsh:RC254-282 ,Small-cell carcinoma ,03 medical and health sciences ,Internal medicine ,medicine ,Chemotherapy ,Humans ,Radiology, Nuclear Medicine and imaging ,Esophagus ,IMRT ,Aged ,Proportional Hazards Models ,Retrospective Studies ,business.industry ,Research ,Cancer ,Retrospective cohort study ,medicine.disease ,Small Cell Lung Carcinoma ,Esophagectomy ,Neoplasm Recurrence, Local ,Radiotherapy, Conformal ,business ,Small cell carcinoma of esophagus - Abstract
BackgroundSmall cell carcinoma of the esophagus (SCCE) is characterized by its progressive feature and poor prognosis. There is no consensus on a standard therapeutic modality for SCCE. In this study, we aimed to characterize the outcomes of primary SCCE patients treated by radiation therapy as part of treatment and investigate prognostic factors.MethodsWe retrospectively analyzed the data of 42 SCCE patients who were treated by RT as part of treatment at the Sun Yat-sen University Cancer Center from 2001 to 2014. The Kaplan-Meier and log-rank method were used to analyze survival. Cox’s hazard regression model was applied to determine prognostic factors.ResultsOf the 42 enrolled patients, 25 had limited disease (LD) and 17 with extensive disease (ED). The overall response rate (CR + PR) was 60.0% (21/35). The median overall survival time (OS) for whole and LD group were 12.9 and 36.8 months. The 1-, 3- and 5-year OS rates of the whole cohort were 64.9, 31.3, and 13.9%, respectively. OS was significantly longer in patients with ECOG performance score (ECOG PS) p = 0.001), lesion length ≤ 5 cm (p = 0.001), and LD (p = 0.049). In the patients with LD, multivariate analysis indicated that combined with chemotherapy (P = 0.046) and higher radiation dose (P = 0.027) predicted better prognosis in OS. The overall rate of grade 3–4 toxicities in the whole cohort was 37.5%. In total, 65% (17/26) patients with recurrent disease died with the metastasis with or without the primary recurrence.ConclusionRT was one of the effective and safe treatments for locoregional control of SCCE. Lower ECOG PS score, shorter lesion length, treated with chemotherapy, and a higher dose of RT were identified as favorable independent prognostic factors.
- Published
- 2019
47. Soil nitrogen and its fractions between long-term conventional and no-tillage systems with straw retention in dryland farming in northern China
- Author
-
Baoqing Chen, Yanqing Zhang, Enke Liu, Changrong Yan, and Hengheng Zhang
- Subjects
Residue (complex analysis) ,Conventional tillage ,Soil Science ,04 agricultural and veterinary sciences ,010501 environmental sciences ,Straw ,01 natural sciences ,Tillage ,Agronomy ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Soil horizon ,Dryland farming ,Soil fertility ,Cropping system ,0105 earth and related environmental sciences - Abstract
Knowledge about the changes in soil nitrogen pools under different tillage managements is necessary to assess the feasibility of adoption of conservation practices for sustaining productivity and protecting the environment in dryland farming in northern China. We investigated the long-term effects (22 years) of no-till with residue retention (NTR) on total soil N and its fractions in a dry-land winter wheat ( Triticum aestivum L.) cropping system in northern China. Compared with conventional tillage without residue retention (CT), significantly higher soil total N (STN) concentrations were observed in the surface soil layer (0–10 cm) under NTR. Meanwhile, more soil N accumulated for the whole soil profile (0 to 60 cm) in the NTR (3.38 Mg ha − 1 ) treatment relative to the CT (3.17 Mg ha − 1 ) treatment. The particulate organic matter N (PON), microbial biomass N (MBN), and water extractable organic N (WEON) levels in the NTR treatments were 52.3%, 116%, and 69.4% greater at a depth of 0–5 cm and 41.6%, 108%, and 44.9% greater at a depth of 5–10 cm, respectively, compared with the CT treatment. However, no differences were observed below the 10 cm layer. At a depth of 0–60 cm, the soil NH 4 -N content under CT was higher than that under NTR. However, the soil NO 3 -N contents in the NTR treatments were significantly greater at a depth of 0–10 cm and were not significantly different at a depth of 10–60 cm, relative to the CT treatment. Significantly positive correlations were observed between the STN and the labile organic N fractions. Overall, the results show that no-till coupled with residue retention is an effective management method for improving soil N stocks and increasing soil fertility. Nonetheless, other benefits associated with NT and residue retention present greater challenges regarding their popularization and application in the dryland farming areas in northern China.
- Published
- 2016
- Full Text
- View/download PDF
48. Linkage between soil organic carbon and the utilization of soil microbial carbon under plastic film mulching in a semi-arid agroecosystem in China
- Author
-
Yanqing Zhang, Baoqing Chen, Pengfei Si, Zhe Zhang, Enke Liu, Changrong Yan, Xiu Liu, and Wenyi Dong
- Subjects
0106 biological sciences ,Agroecosystem ,Soil organic matter ,Plastic film ,Soil Science ,Soil chemistry ,04 agricultural and veterinary sciences ,Soil carbon ,complex mixtures ,01 natural sciences ,Soil quality ,Agronomy ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,sense organs ,Soil fertility ,Agronomy and Crop Science ,Mulch ,010606 plant biology & botany - Abstract
Studying changes in soil organic carbon (SOC) pools and soil microbial C substrate utilization under plastic mulching in different seasons is of great significance for improving soil fertility and sustainable agricultural development. Based on a 2-year plastic film mulching experiment in northeastern China, we investigated the SOC, labile SOC fractions under three treatments: non-mulching (NM), autumn mulching (AM) and spring mulching (SM). The results showed that SOC decreased with soil depth under the AM and SM treatments compared with the NM treatment. The microbial biomass carbon (MBC) and dissolved organic carbon (DOC) under the AM treatment increased significantly in the 0–10 cm soil layer, by 31.2% and 27.2% (p
- Published
- 2019
- Full Text
- View/download PDF
49. Combination with Stereotactic Body Radiotherapy Offers a Promising Strategy to Overcome Resistance to Immunotherapy in Advanced Renal Cell Cancer
- Author
-
Lingling Ge, Baoqing Chen, Jiaming Liu, Aru Na, Xiaowen Sun, and Lu Gan
- Subjects
0301 basic medicine ,Oncology ,medicine.medical_specialty ,Tumor microenvironment ,Combination therapy ,Tumor hypoxia ,business.industry ,medicine.medical_treatment ,Immunotherapy ,Review Article ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Immune system ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Cell cancer ,In patient ,business ,Stereotactic body radiotherapy - Abstract
Immunotherapy for renal cell cancer (RCC) has witnessed several developments for more than two decades. Checkpoint inhibitors, including anti-CTLA-4 and anti-PD-1/PD-L1 blockers, have changed the treatment landscape for patients with advanced RCC in the past 3 years. Despite these advances, more than 55% RCC patients become resistant to different immunotherapies without other treatment combination. Among various attempts at overcoming resistance to immunotherapy, stereotactic body radiotherapy (SBRT) has been found to potentiate the activity of immunotherapy agents through several potential mechanisms, including normalization of microvessels to alleviate tumor hypoxia, improvement in efficient delivery of drugs, abundant neoantigen exposure, and recruitment of antitumor immune cells to alter the immunosuppressive tumor microenvironment. Preclinical studies and clinical case reports have predicted that the combination of SBRT, an immunotherapy, may lead to remarkable results. This review aims to provide the biological basis for the feasibility of combining SBRT to overcome immunotherapy resistance and to review the currently available clinical evidence of this combination therapy in patients with advanced RCC.
- Published
- 2019
50. Exosomal lncRNAs as new players in cell-to-cell communication
- Author
-
Mihnea P. Dragomir, George A. Calin, and Baoqing Chen
- Subjects
0301 basic medicine ,Cancer Research ,Messenger RNA ,Cell signaling ,RNA ,Computational biology ,Biology ,Exosome ,Phenotype ,Microvesicles ,Article ,03 medical and health sciences ,Crosstalk (biology) ,030104 developmental biology ,Oncology ,microRNA ,Radiology, Nuclear Medicine and imaging - Abstract
Neoplastic cells use various intercellular communication mechanisms in order to adapt to the local microenvironment, manipulate the immune system, and facilitate metastasis. Exosomes release is a new mechanism of cell-to-cell communication. These nanovesicles enclose various types of molecules including lipids, proteins, DNA, messenger RNA (mRNA) and non-coding RNAs [microRNA and long non-coding RNA (lncRNA)]. lncRNAs are over 200 nt long transcripts, that exhibit no coding potential, but are crucial regulators of physiological processes and are deregulated in cancer. In this review, we will discuss the role of exosomal lncRNAs in cancer, which is an incipient research field that could bring new insights to the vast domain of intercellular communication. Exosomal lncRNAs seem to be promising biomarkers for any type of cancer. The exact role of exosomal lncRNAs is not fully revealed. Several studies show that cancer derived exosomal lncRNAs are functional and can transmit to neighboring cells different phenotypic patterns, like drug resistance and increased angiogenesis. We further discuss the mechanistic function of exosomal lncRNAs, and hypothesize that the crowded exosomal content can be a suitable place of RNA species crosstalk. Finally, we assume that lncRNAs could be a loading vehicle for miRNAs, mRNAs and other complex molecules into the exosome but future studies are required to confirm these hypotheses.
- Published
- 2018
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.