4,354 results on '"Baranger, A"'
Search Results
2. Experimental Learning of a Hyperelastic Behavior with a Physics-Augmented Neural Network
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Jailin, Clément, Benady, Antoine, Legroux, Remi, and Baranger, Emmanuel
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Physics - Medical Physics - Abstract
The recent development of Physics-Augmented Neural Networks (PANN) opens new opportunities for modeling material behaviors. These approaches have demonstrated their efficiency when trained on synthetic cases. This study aims to demonstrate the effectiveness of training PANN using real experimental data for modeling hyperelastic behavior. The approach involved two uni-axial experiments equipped with digital image correlation and force sensors. The tests achieved axial deformations exceeding 200% and presented non-linear responses. Twenty loading steps extracted from one experiment were used to train the PANN. The model architecture was optimized based on results from a validation dataset, utilizing equilibrium gap loss computed on six loading steps. Finally, 544 loading steps from the first experiment and 80 steps from a second independent experiment were used for testing purposes. The PANN model effectively captured the hyperelastic behavior across and beyond the training loads, showing superior performance compared to the standard Neo-Hookean model when assessed using various evaluation metrics. Training PANN with experimental mechanical data shows promising results, outperforming traditional modeling approaches., Comment: Experimental Mechanics, 2024
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- 2024
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3. Cross-ancestry genetic investigation of schizophrenia, cannabis use disorder, and tobacco smoking
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Johnson, Emma C., Austin-Zimmerman, Isabelle, Thorpe, Hayley H. A., Levey, Daniel F., Baranger, David A. A., Colbert, Sarah M. C., Demontis, Ditte, Khokhar, Jibran Y., Davis, Lea K., Edenberg, Howard J., Di Forti, Marta, Sanchez-Roige, Sandra, Gelernter, Joel, and Agrawal, Arpana
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- 2024
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4. Extreme Poisson’s ratios recorded in the secondary phloem of Malvaceae: a highlight on the biomechanical function of bark
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Alméras, Tancrède, Corn, Stéphane, Baranger, Anne, Regazzi, Arnaud, Barés, Jonathan, Lehnebach, Romain, and Clair, Bruno
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- 2024
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5. Prenatal cannabis exposure, the brain, and psychopathology during early adolescence
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Baranger, David A. A., Miller, Alex P., Gorelik, Aaron J., Paul, Sarah E., Hatoum, Alexander S., Johnson, Emma C., Colbert, Sarah M. C., Smyser, Christopher D., Rogers, Cynthia E., Bijsterbosch, Janine D., Agrawal, Arpana, and Bogdan, Ryan
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- 2024
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6. Identification of Bimodular Material Parameters via a Semi-Closed Form Solution of the Brazilian Test
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Hong, H. and Baranger, T.N.
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- 2024
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7. What's in a Word? Student Beliefs and Understanding about Green Chemistry
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Laura B. Armstrong, Lauren M. Irie, Kelly Chou, Mariana Rivas, Michelle C. Douskey, and Anne M. Baranger
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For the past decade, the College of Chemistry at UC Berkeley has iteratively redesigned general chemistry laboratory courses to introduce students to green chemistry concepts, while simultaneously using green chemistry as a relevant context to learn chemistry. To investigate the effectiveness of this curriculum we developed approaches to investigate student understanding of green chemistry. We adapted a constructivist educational framework to iteratively design fixed and free response items appropriate for large enrollment courses that probe student knowledge of green chemistry concepts and practices. Two free response items were designed to probe students' ability to define green chemistry and make green chemistry decisions in the context of a case study. A set of fixed response items were designed to probe particular aspects of green chemistry knowledge that were included in the course. Together, we used these items to characterize (1) changes in student understanding of green chemistry and (2) how prior ''green'' knowledge impacts student learning of new green chemistry principles in the general chemistry laboratory course. Analysis of student responses indicated that, on average, students demonstrated increased green chemistry understanding after completing this green chemistry aligned laboratory course. Students were able to integrate more normative green chemistry principles in their answers and began to indicate awareness of complex interconnected systems. Because the items focused on assessing student knowledge of green chemistry, rather than their self-assessment of knowledge, they provided valuable insight regarding students' prior green chemistry knowledge that will be used to develop future versions of the curriculum.
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- 2024
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8. Development of a Week-Long Mathematics Intervention for Incoming Chemistry Graduate Students
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Clune, Rachel, Das, Avishek, Jasrasaria, Dipti, Rossomme, Elliot, Cohen, Orion, and Baranger, Anne M
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Curriculum and Pedagogy ,Education Systems ,Education ,mathematics ,intervention ,inequity ,physical chemistry ,graduate education ,activelearning ,group learning ,sense of belonging ,Chemical Sciences ,Chemical sciences - Abstract
A student-led mathematics bootcamp has been designed and implemented to help foster community building, improve confidence in mathematical skills, and provide mathematical resources for incoming physical chemistry doctoral students. The bootcamp is held immediately before the start of the first semester of graduate school and uses an active learning approach to review and practice undergraduate-level mathematics problems over 5 days in small student groups. This work includes the development and presentation of a new, publicly available mathematics curriculum for the bootcamp on select mathematics topics, including calculus, linear algebra, functions, differential equations, statistics, and coding in Python, aiming at improving students' confidence and learning experiences in graduate quantum mechanics and statistical physics courses. Surveys before and after the bootcamp showed an increase in students' confidence in problem-solving in key mathematical areas and social aspects of peer-led group learning. Qualitative and quantitative analyses demonstrate that the bootcamp reduced prior inequities in students' confidence metrics based on gender and mathematical background.
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- 2023
9. The brain of fetuses with congenital diaphragmatic hernia shows signs of hypoxic injury with loss of progenitor cells, neurons, and oligodendrocytes
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Biouss, George, Antounians, Lina, Aguet, Julien, Kopcalic, Katarina, Fakhari, Nikan, Baranger, Jerome, Mertens, Luc, Villemain, Olivier, and Zani, Augusto
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- 2024
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10. Abnormal vascular thickness and stiffness in young adults with type 1 diabetes: new insights from cutting-edge ultrasound modalities
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De Biasio, Michael J., Furman, Michelle, Clarke, Antoine, Hui, Wei, Elia, Yesmino, Baranger, Jerome, Villemain, Olivier, Mertens, Luc, and Mahmud, Farid H.
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- 2024
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11. The brain of fetuses with congenital diaphragmatic hernia shows signs of hypoxic injury with loss of progenitor cells, neurons, and oligodendrocytes
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George Biouss, Lina Antounians, Julien Aguet, Katarina Kopcalic, Nikan Fakhari, Jerome Baranger, Luc Mertens, Olivier Villemain, and Augusto Zani
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Congenital diaphragmatic hernia ,Intrathoracic compression ,Hypoxia ,Cerebral perfusion ,Medicine ,Science - Abstract
Abstract Congenital diaphragmatic hernia (CDH) is a birth defect characterized by incomplete closure of the diaphragm, herniation of abdominal organs into the chest, and compression of the lungs and the heart. Besides complications related to pulmonary hypoplasia, 1 in 4 survivors develop neurodevelopmental impairment, whose etiology remains unclear. Using a fetal rat model of CDH, we demonstrated that the compression exerted by herniated organs on the mediastinal structures results in decreased brain perfusion on ultrafast ultrasound, cerebral hypoxia with compensatory angiogenesis, mature neuron and oligodendrocyte loss, and activated microglia. In CDH fetuses, apoptosis was prominent in the subventricular and subgranular zones, areas that are key for neurogenesis. We validated these findings in the autopsy samples of four human fetuses with CDH compared to age- and sex-matched controls. This study reveals the molecular mechanisms and cellular changes that occur in the brain of fetuses with CDH and creates opportunities for therapeutic targets.
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- 2024
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12. Multivariate genome-wide association meta-analysis of over 1 million subjects identifies loci underlying multiple substance use disorders
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Hatoum, Alexander S, Colbert, Sarah MC, Johnson, Emma C, Huggett, Spencer B, Deak, Joseph D, Pathak, Gita A, Jennings, Mariela V, Paul, Sarah E, Karcher, Nicole R, Hansen, Isabella, Baranger, David AA, Edwards, Alexis, Grotzinger, Andrew D, Tucker-Drob, Elliot M, Kranzler, Henry R, Davis, Lea K, Sanchez-Roige, Sandra, Polimanti, Renato, Gelernter, Joel, Edenberg, Howard J, Bogdan, Ryan, and Agrawal, Arpana
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Biological Sciences ,Biomedical and Clinical Sciences ,Genetics ,Biological Psychology ,Psychology ,Pharmacology and Pharmaceutical Sciences ,Human Genome ,Brain Disorders ,Drug Abuse (NIDA only) ,Substance Misuse ,Genetic Testing ,Prevention ,2.1 Biological and endogenous factors ,Aetiology ,2.3 Psychological ,social and economic factors ,Mental health ,Good Health and Well Being ,Substance Use Disorder Working Group of the Psychiatric Genomics Consortium - Abstract
Genetic liability to substance use disorders can be parsed into loci that confer general or substance-specific addiction risk. We report a multivariate genome-wide association meta-analysis that disaggregates general and substance-specific loci for published summary statistics of problematic alcohol use, problematic tobacco use, cannabis use disorder, and opioid use disorder in a sample of 1,025,550 individuals of European descent and 92,630 individuals of African descent. Nineteen independent SNPs were genome-wide significant (P < 5e-8) for the general addiction risk factor (addiction-rf), which showed high polygenicity. Across ancestries, PDE4B was significant (among other genes), suggesting dopamine regulation as a cross-substance vulnerability. An addiction-rf polygenic risk score was associated with substance use disorders, psychopathologies, somatic conditions, and environments associated with the onset of addictions. Substance-specific loci (9 for alcohol, 32 for tobacco, 5 for cannabis, 1 for opioids) included metabolic and receptor genes. These findings provide insight into genetic risk loci for substance use disorders that could be leveraged as treatment targets.
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- 2023
13. Metacognitive Regulation in Organic Chemistry Students: How and Why Students Use Metacognitive Strategies When Predicting Reactivity
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Blackford, Katherine A., Greenbaum, Julia C., Redkar, Nikita S., Gaillard, Nelson T., Helix, Max R., and Baranger, Anne M.
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Problem solving is a key component of authentic scientific research and practice in organic chemistry. One factor that has been shown to have a major role in successful problem solving in a variety of disciplines is metacognitive regulation, defined as the control of one's thought processes through the use of planning, monitoring, and evaluation strategies. Despite the growing interest in assessing and promoting metacognition in the field of chemical education, few studies have investigated this topic in the context of organic chemistry students. To gain a deeper understanding of how and why students make use of strategies related to metacognitive regulation in their approaches to solving problems, we conducted interviews with Organic Chemistry I, Organic Chemistry II, and graduate organic chemistry students and used multiple measures to examine students' metacognition. As a part of these interviews, students verbalized their thoughts as they worked on complex predict-the-product problems and completed a self-report instrument indicating which planning, monitoring, and evaluation strategies they had used while completing each problem. Think-aloud protocols were analyzed for the presence of each of the behaviors included on the self-report instrument, and students' use of metacognitive strategies was compared to identify differences between students with different levels of experience and between students who generated more and less successful solutions to the problems. Students who generated more successful solutions to the problems tended to report using a greater number of metacognitive strategies. When asked why they did or did not use certain metacognitive strategies, students indicated a number of factors, such as not feeling able to use these strategies effectively or believing that using these strategies was unnecessary. The results of this study support the importance of teaching metacognitive problem-solving strategies in organic chemistry courses and suggest several methods for the assessment and instruction of metacognition.
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- 2023
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14. Abnormal vascular thickness and stiffness in young adults with type 1 diabetes: new insights from cutting-edge ultrasound modalities
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Michael J. De Biasio, Michelle Furman, Antoine Clarke, Wei Hui, Yesmino Elia, Jerome Baranger, Olivier Villemain, Luc Mertens, and Farid H. Mahmud
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Type 1 diabetes ,Carotid intima-media thickness ,Pulse wave velocity ,High frequency ultrasound ,Ultrafast ultrasound imaging ,Cardiovascular disease ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Cardiovascular disease (CVD) remains the leading cause of morbidity and mortality in patients with Type 1 Diabetes (T1D). Early markers of CVD include increased carotid intima-media thickness (CIMT) and pulse wave velocity (PWV), but these existing ultrasound technologies show limited spatial and temporal resolution in young adults. The purpose of this study is to evaluate the utility of high-resolution ultrasound modalities, including high frequency ultrasound CIMT (hfCIMT) and ultrafast ultrasound PWV (ufPWV), in young adults with Type 1 Diabetes. Methods This is a prospective single-center observational cohort study including 39 participants with T1D and 25 age and sex matched controls. All participants underwent hfCIMT and ufPWV measurements. hfCIMT and ufPWV measures of T1D were compared with controls and associations with age, sex, BMI, A1c, blood pressure, and lipids were studied. Results Mean age was 24.1 years old in both groups. T1D had a greater body mass index (27.7 [5.7] vs 23.1 [3.2] kg/m2), LDL Cholesterol, and estimated GFR, and had a mean A1c of 7.4 [1.0] % (57 mmol/mol) and diabetes duration of 16.1 [3.7] years with 56% using insulin pumps. In T1D, hfCIMT was significantly increased as compared to controls (0.435 ± 0.06 mm vs 0.379 ± 0.06 mm respectively, p
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- 2024
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15. Coherent Phonons in Antimony: An Undergraduate Physical Chemistry Solid-State Ultrafast Laser Spectroscopy Experiment
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Porter, Ilana J, Zuerch, Michael W, Baranger, Anne M, and Leone, Stephen R
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Upper-Division Undergraduate ,Physical Chemistry ,Laboratory Instruction ,Hands-On Learning ,Manipulatives ,Solid State Chemistry ,Spectroscopy ,Lasers ,Metalloids ,Semimetals ,Quantum Chemistry ,Chemical Sciences ,Education - Abstract
Ultrafast laser pump-probe spectroscopy is an important and growing field of physical chemistry that allows the measurement of chemical dynamics on their natural time scales, but undergraduate laboratory courses lack examples of such spectroscopy and the interpretation of the dynamics that occur. Here we develop and implement an ultrafast pump-probe spectroscopy experiment for the undergraduate physical chemistry laboratory course at the University of California Berkeley. The goal of the experiment is to expose students to concepts in solid-state chemistry and ultrafast spectroscopy via classic coherent phonon dynamics principles developed by researchers over multiple decades. The experiment utilizes a modern high-repetition-rate 800 nm femtosecond Ti:sapphire laser, split pulses with a variable time delay, and sensitive detection of transient reflectivity signals using the lock-in technique. The experiment involves minimal intervention from students and is therefore easy and safe to implement in the laboratory. Students first perform an intensity autocorrelation measurement on the femtosecond laser pulses to obtain their temporal duration. Then, students measure the pump-probe reflectivity of a single-crystal antimony sample to determine the period of coherent phonon oscillations initiated by an ultrafast pulse excitation, which is analyzed by fitting to a sine wave. Students who completed the experiment in-person obtained good experimental results, and students who took the course remotely due to the COVID-19 pandemic were provided with the data they would have obtained during the experiment to analyze. Evaluation of student written and oral reports reveals that the learning goals were met, and that students gained an appreciation for the field of ultrafast laser-induced chemistry.
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- 2023
16. Scaler nonlinear continuum damage models for ceramic matrix composites with and without in plane ply anisotropy at room temperature
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Przybyla, Craig, Débarre, Antoine, Maire, Jean-François, Baranger, Emmanuel, and Laurin, Frédéric
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- 2025
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17. BRUNO ESTIGARRIBIA. 2020. A Grammar of Paraguayan Guarani
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Estefanía Baranger
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a grammar of paraguayan guarani ,bruno estigarribia ,Philology. Linguistics ,P1-1091 - Abstract
Entre las lenguas indígenas sudamericanas y dentro de la misma familia lingüística tupí-guaraní, el guaraní paraguayo es una de las lenguas más estudiadas y descriptas. Desde los primeros trabajos de los religiosos Ruiz de Montoya ([1639] 1876 y 1640) y Restivo ([1722] 1893 y [1724] 1892), destinados a la descripción del guaraní hablado en las misiones jesuíticas, de la entonces llamada Provincia del Paraguay, la lengua ha sido objeto de numerosas gramáticas (Guasch, 1996; Canese, 1983; ALG, 2020, entre otros) y diccionarios (Guasch, 1961; Canese y Alcaraz, 1997; Sanabria, 2007, entre otros) hasta la fecha. La lengua guaraní incluso cuenta con un organismo en Paraguay, la Academia de la Lengua Guaraní (ALG, de aquí en más), que se ha abocado tanto a su descripción como a su estandarización desde su creación en el año 2012. No obstante, si bien valiosos para la implementación de políticas lingüísticas y educativas, los trabajos anteriormente citados, de corte más prescriptivista y normativo, suelen centrarse en una única variedad del guaraní: el guaranieté (también llamado "guaraní académico" o "guaraní culto"), asociado con la lengua escrita, y rara vez reflejan el uso real de la lengua por parte de los hablantes. Lino Trinidad Sanabria, quien se encuentra entre los miembros fundadores de la ALG, incluye, por ejemplo, en su diccionario (Sanabria, 2007) un apéndice sobre el jopará, la variedad del guaraní más influenciada por el español, donde advierte que debe evitarse en tanto "atenta con la autenticidad y el brillo de la lengua guaraní" (Sanabria, 2007: 5). Asimismo, en términos analíticos, la tradición generalmente se vale de categorías que, si bien resultan útiles para describir las lenguas europeas, encuentran limitaciones al aplicarse a una lengua tipológicamente disímil, como es el caso del guaraní.
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- 2023
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18. Matrix metalloproteinases as new targets in Alzheimer's disease: Opportunities and Challenges
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Zipfel, Pauline, Rochais, Christophe, Baranger, Kévin, Rivera, Santiago, and Dallemagne, Patrick
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Quantitative Biology - Neurons and Cognition - Abstract
Although matrix metalloproteinases (MMPs) are implicated in the regulation of numerous physiological processes, evidences of their pathological roles have also been obtained in the last decades, making MMPs attractive therapeutic targets for several diseases. Recent discoveries of their involvement in central nervous system (CNS) disorders, and in particular in Alzheimer's disease (AD), have paved the way to consider MMP modulators as promising therapeutic strategies. Over the past few decades, diverse approaches have been undertaken in the design of
- Published
- 2021
19. Coherent Phonons in Antimony: an Undergraduate Physical Chemistry Solid-State Ultrafast Laser Spectroscopy Experiment
- Author
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Porter, Ilana J, Zuerch, Michael W., Baranger, Anne M., and Leone, Stephen R.
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Physics - Physics Education ,Condensed Matter - Other Condensed Matter - Abstract
Ultrafast laser pump-probe spectroscopy is an important and growing field of physical chemistry that allows the measurement of chemical dynamics on their natural timescales, but undergraduate laboratory courses lack examples of such spectroscopy and the interpretation of the dynamics that occur. Here we develop and implement an ultrafast pump probe spectroscopy experiment for the undergraduate physical chemistry laboratory course at the University of California Berkeley. The goal of the experiment is to expose students to concepts in solid-state chemistry and ultrafast spectroscopy via classic coherent phonon dynamics principles developed by researchers over multiple decades. The experiment utilizes a modern high-repetition-rate 800 nm femtosecond Ti:Sapphire laser, split pulses with a variable time delay, and sensitive detection of transient reflectivity signals using the lock-in technique. The experiment involves minimal intervention from students and is therefore easy and safe to implement in the laboratory. Students first perform an intensity autocorrelation measurement on the femtosecond laser pulses to obtain their temporal duration. Then, students measure the pump-probe reflectivity of a single-crystal antimony sample to determine the period of coherent phonon oscillations initiated by an ultrafast pulse excitation, which is analyzed by fitting to a sine wave. Students who completed the experiment in-person obtained good experimental results, and students who took the course remotely due to the COVID-19 pandemic were provided with the data they would have obtained during the experiment to analyze. Evaluation of student written and oral reports reveals that the learning goals were met, and that students gained an appreciation for the field of ultrafast laser-induced chemistry.
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- 2021
- Full Text
- View/download PDF
20. A classification of buyers in first-sale fish markets: Evidence from France
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Wolff, François-Charles, Salladarré, Frédéric, and Baranger, Laurent
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- 2024
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21. Measuring integrated understanding of undergraduate chemistry research experiences: assessing oral and written research artifacts
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Helix, Max R, Coté, Laleh E, Stachl, Christiane N, Linn, Marcia C, Stone, Elisa M, and Baranger, Anne M
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Education - Abstract
Understanding the impact of undergraduate research experiences (UREs) and course-based undergraduate research experiences (CUREs) is crucial as universities debate the value of allocating scarce resources to these activities. We report on the Berkeley Undergraduate Research Evaluation Tools (BURET), designed to assess the learning outcomes of UREs and CUREs in chemistry and other sciences. To validate the tools, we administered BURET to 70 undergraduate students in the College of Chemistry and 19 students from other STEM fields, comparing the performance of students who had less than one year of undergraduate research to those with more than one year of research experience. Students wrote reflections and responded to interviews during poster presentations of their research project. BURET asks students to communicate the significance of their project, analyze their experimental design, interpret their data, and propose future research. Scoring rubrics reward students for integrating disciplinary evidence into their narratives. We found that the instruments yielded reliable scores, and the results clarified the impacts of undergraduate research, specifically characterizing the strengths and weaknesses of undergraduate researchers in chemistry at our institution. Students with at least a year of research experience were able to use disciplinary evidence more effectively than those with less than one year of experience. First-year students excelled at explaining the societal relevance of their work, but they incorporated only minimal discussion of prior research into their reflections and presentations. Students at all levels struggled to critique their own experimental design. These results have important implications for undergraduate learning, suggesting areas for faculty members, graduate student research mentors, and CURE or URE programs to improve undergraduate research experiences.
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- 2022
22. Conductance of a Dissipative Quantum Dot: Nonequilibrium Crossover Near a Non-Fermi-Liquid Quantum Critical Point
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Zhang, Gu, Novais, E., and Baranger, Harold U.
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Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Strongly Correlated Electrons - Abstract
We find the nonlinear conductance of a dissipative resonant level in the nonequilibrium steady state near its quantum critical point. The system consists of a spin-polarized quantum dot connected to two resistive leads that provide ohmic dissipation. We focus on the crossover from the strong-coupling, non-Fermi-liquid regime to the weak-coupling, Fermi-liquid ground state, a crossover driven by the instability of the quantum critical point to hybridization asymmetry or detuning of the level in the dot. We show that the crossover properties are given by tunneling through an effective single barrier described by the boundary sine-Gordon model. The nonlinear conductance is then obtained from thermodynamic Bethe ansatz results in the literature, which were developed to treat tunneling in a Luttinger liquid. The current-voltage characteristics are thus found for any value of the resistance of the leads. For the special case of lead resistance equal to the quantum resistance, we find mappings onto, first, the two-channel Kondo model and, second, an effectively noninteracting model from which the nonlinear conductance is found analytically. A key feature of the general crossover function is that the nonequilibrium crossover driven by applied bias is different from the crossover driven by temperature -- we find that the nonequilibrium crossover is substantially sharper. Finally, we compare to experimental results for both the bias and temperature crossovers: the agreement is excellent., Comment: 18 pages. Accepted version: small corrections and improvements from v1
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- 2021
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23. Characterization of Student Problem Solving and Development of a General Workflow for Predicting Organic Reactivity
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Helix, Max R., Blackford, Katherine A., Firestein, Zachary M., Greenbaum, Julia C., Gibson, Katarina, and Baranger, Anne M.
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A central practice in the discipline of organic chemistry is the ability to solve certain fundamental problems, including predicting reactivity, proposing mechanisms, and designing syntheses. These problems are encountered frequently by both students and practitioners, who need to utilize vast amounts of content knowledge in specific ways to generate reasonable solutions. To gain insight into how one of these major problem types can be solved, we have investigated student approaches to complex predict-the-product problems through the detailed analysis of think-aloud interviews. This work led to the creation of a general workflow model that describes the reasoning pathways of students with varying levels of expertise when attempting to predict organic reactivity. The problems used in this study were designed to be non-trivial and potentially ambiguous to elicit ''true'' problem solving and discourage a purely memorization-based approach, even from more experienced organic chemists. Rich descriptions of undergraduate and graduate student interviews are provided, and student thought processes are characterized in terms of common problem-solving actions. These actions were developed into the workflow model using an iterative method that combined results from our analysis with the experiences of instructors and feedback from both undergraduate focus groups and graduate students. The workflow serves as both a potential instructional tool and a model for student thinking. This model is general enough to be applied to both successful and unsuccessful solution pathways by both novice undergraduates and more expert-like graduate students. Characteristics of more successful and more experienced problem solvers are investigated, and concrete strategies that can be recommended to students are discussed. The results of this study complement existing work on other fundamental problem types in organic chemistry and suggest a variety of teaching interventions to develop students into more successful organic problem solvers.
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- 2022
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24. Unsupervised learning of history-dependent constitutive material laws with thermodynamically-consistent neural networks in the modified Constitutive Relation Error framework
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Benady, Antoine, Baranger, Emmanuel, and Chamoin, Ludovic
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- 2024
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25. Psychotic-like Experiences and Polygenic Liability in the Adolescent Brain Cognitive Development Study
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Karcher, Nicole R, Paul, Sarah E, Johnson, Emma C, Hatoum, Alexander S, Baranger, David AA, Agrawal, Arpana, Thompson, Wesley K, Barch, Deanna M, and Bogdan, Ryan
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Mental Health ,Genetics ,Brain Disorders ,Pediatric ,Serious Mental Illness ,Schizophrenia ,Neurosciences ,Human Genome ,Behavioral and Social Science ,Aetiology ,2.3 Psychological ,social and economic factors ,2.1 Biological and endogenous factors ,Mental health ,Good Health and Well Being ,Adolescent ,Brain ,Child ,Cognition ,Female ,Genome-Wide Association Study ,Humans ,Male ,Mental Disorders ,Psychotic Disorders ,Educational attainment ,MRI ,Polygenic ,Psychopathology ,Psychotic-like experiences - Abstract
BackgroundChildhood psychotic-like experiences (PLEs) often precede the development of later severe psychopathology. This study examined whether childhood PLEs are associated with several psychopathology-related polygenic scores (PGSs) and additionally examined possible neural and behavioral mechanisms.MethodsAdolescent Brain Cognitive Development Study baseline data from children with European ancestry (n = 4650, ages 9-10 years, 46.8% female) were used to estimate associations between PLEs (i.e., both total and presence of significantly distressing) and PGSs for psychopathology (i.e., schizophrenia, psychiatric cross-disorder risk, PLEs) and related phenotypes (i.e., educational attainment [EDU], birth weight, inflammation). We also assessed whether variability in brain structure indices (i.e., volume, cortical thickness, surface area) and behaviors proximal to PGSs (e.g., cognition for EDU) indirectly linked PGSs to PLEs using mediational models.ResultsTotal and significantly distressing PLEs were associated with EDU and cross-disorder PGSs (all %ΔR2s = 0.202%-0.660%; false discovery rate-corrected ps < .006). Significantly distressing PLEs were also associated with higher schizophrenia and PLE PGSs (both %ΔR2 = 0.120%-0.216%; false discovery rate-corrected ps < .03). There was evidence that global brain volume metrics and cognitive performance indirectly linked EDU PGS to PLEs (estimated proportion mediated = 3.33%-32.22%).ConclusionsTotal and significantly distressing PLEs were associated with genomic risk indices of broad-spectrum psychopathology risk (i.e., EDU and cross-disorder PGSs). Significantly distressing PLEs were also associated with genomic risk for psychosis (i.e., schizophrenia, PLEs). Global brain volume metrics and PGS-proximal behaviors represent promising putative intermediary phenotypes that may indirectly link genomic risk to psychopathology. Broadly, polygenic scores derived from genome-wide association studies of adult samples generalize to indices of psychopathology risk among children.
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- 2022
26. A Non-Intrusive Space-Time Interpolation from Compact Stiefel Manifolds of Parametrized Rigid-Viscoplastic FEM Problems
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Friderikos, Orestis, Olive, Marc, Baranger, Emmanuel, Sagris, Dimitrios, and David, Constantine
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Mathematics - Differential Geometry - Abstract
This work aims to interpolate parametrized Reduced Order Model (ROM) basis constructed via the Proper Orthogonal Decomposition (POD) to derive a robust ROM of the system's dynamics for an unseen target parameter value. A novel non-intrusive Space-Time (ST) POD basis interpolation scheme is proposed, for which we define ROM spatial and temporal basis \emph{curves on compact Stiefel manifolds}. An interpolation is finally defined on a \emph{mixed part} encoded in a square matrix directly deduced using the space part, the singular values and the temporal part, to obtain an interpolated snapshot matrix, keeping track of accurate space and temporal eigenvectors. Moreover, in order to establish a well-defined curve on the compact Stiefel manifold, we introduce a new procedure, the so-called oriented SVD. Such an oriented SVD produces unique right and left eigenvectors for generic matrices, for which all singular values are distinct. It is important to notice that the ST POD basis interpolation does not require the construction and the subsequent solution of a reduced-order FEM model as classically is done. Hence it is avoiding the bottleneck of standard POD interpolation which is associated with the evaluation of the nonlinear terms of the Galerkin projection on the governing equations. As a proof of concept, the proposed method is demonstrated with the adaptation of rigid-thermoviscoplastic finite element ROMs applied to a typical nonlinear open forging metal forming process. Strong correlations of the ST POD models with respect to their associated high-fidelity FEM counterpart simulations are reported, highlighting its potential use for near real-time parametric simulations using off-line computed ROM POD databases.
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- 2021
27. On the stability of POD Basis Interpolation via Grassmann Manifolds for Parametric Model Order Reduction in Hyperelasticity
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Friderikos, Orestis, Baranger, Emmanuel, Olive, Marc, and Néron, David
- Subjects
Mathematics - Differential Geometry - Abstract
This work considers the stability of Proper Orthogonal Decomposition (POD) basis interpolation on Grassmann manifolds for parametric Model Order Reduction (pMOR) in hyperelasticity. The article contribution is mainly about stability conditions, all defined from strong mathematical background. We show how the stability of interpolation can be lost if certain geometrical requirements are not satisfied by making a concrete elucidation of the local character of linearization. To this effect, we draw special attention to the Grassmannian Exponential map and optimal injectivity condition of this map, related to the cut--locus of Grassmann manifolds. From this, explicit stability conditions are established and can be directly used to determine the loss of injectivity in practical pMOR applications. Another stability condition is formulated when increasing the number p of mode, deduced from principal angles of subspaces of different dimensions p. This stability condition helps to explain the non-monotonic oscillatory behavior of the error-norm with respect to the number of POD modes, and on the contrary, the monotonic decrease of the error-norm in the two benchmark numerical examples considered herein. Under this study, pMOR is applied in hyperelastic structures using a non-intrusive approach for inserting the interpolated spatial POD ROM basis in a commercial FEM code. The accuracy is assessed by \emph{a posteriori} error norms defined using the ROM FEM solution and its high fidelity counterpart simulation. Numerical studies successfully ascertained and highlighted the implication of stability conditions. The various stability conditions can be applied to a variety of other relevant problems involving parametrized ROMs generation based on POD basis interpolation via Grassmann manifolds.
- Published
- 2020
28. On the stabilization mechanisms of a diffusion edge flame in a cross-flow configuration
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Baranger, Pierre-Antoine and Poinsot, Thierry
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- 2024
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29. The influence of grinding process on the mechanical behavior of SiC/SiC composite tubes under uniaxial tension
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Morel, C., Baranger, E., Lamon, J., Marques, C., Le Bras, S., Braun, J., and Lorrette, C.
- Published
- 2024
- Full Text
- View/download PDF
30. A Phenome-Wide Association Study (PheWAS) of Late Onset Alzheimer Disease Genetic Risk in Children of European Ancestry at Middle Childhood: Results from the ABCD Study
- Author
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Gorelik, Aaron J., Paul, Sarah E., Karcher, Nicole R., Johnson, Emma C., Nagella, Isha, Blaydon, Lauren, Modi, Hailey, Hansen, Isabella S., Colbert, Sarah M. C., Baranger, David A. A., Norton, Sara A., Spears, Isaiah, Gordon, Brian, Zhang, Wei, Hill, Patrick L., Oltmanns, Thomas F., Bijsterbosch, Janine D., Agrawal, Arpana, Hatoum, Alexander S., and Bogdan, Ryan
- Published
- 2023
- Full Text
- View/download PDF
31. Characterizing Alcohol Expectancies in the ABCD Study: Associations with Sociodemographic Factors, the Immediate Social Environment, and Genetic Propensities
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Johnson, Emma C., Paul, Sarah E., Baranger, David A. A., Hatoum, Alexander S., Colbert, Sarah M. C., Lin, Shuyu, Wolff, Rachel, Gorelik, Aaron J., Hansen, Isabella, Karcher, Nicole R., Bogdan, Ryan, and Agrawal, Arpana
- Published
- 2023
- Full Text
- View/download PDF
32. Quantum critical region of a two-dimensional spin-half XXZ model
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Lee, Ji-Woo and Baranger, Harold U.
- Published
- 2023
- Full Text
- View/download PDF
33. Driven-dissipative phase transition in a Kerr oscillator: From semiclassical $\mathcal{PT}$ symmetry to quantum fluctuations
- Author
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Zhang, Xin H. H. and Baranger, Harold U.
- Subjects
Quantum Physics ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
We study a minimal model that has a driven-dissipative quantum phase transition, namely a Kerr non-linear oscillator subject to driving and dissipation. Using mean-field theory, exact diagonalization, and the Keldysh formalism, we analyze the critical phenomena in this system, showing which aspects can be captured by each approach and how the approaches complement each other. Then critical scaling and finite-size scaling are calculated analytically using the quantum Langevin equation. The physics contained in this simple model is surprisingly rich: it includes a continuous phase transition, $Z_{2}$ symmetry breaking, $\mathcal{PT}$ symmetry, state squeezing, and critical fluctuations. Due to its simplicity and solvability, this model can serve as a paradigm for exploration of open quantum many-body physics., Comment: published version, 12 pages
- Published
- 2020
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34. Numerical boundary conditions in Finite Volume and Discontinuous Galerkin schemes for the simulation of rarefied flows along solid boundaries
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Baranger, Céline, Hérouard, Nicolas, Mathiaud, Julien, and Mieussens, Luc
- Subjects
Mathematics - Numerical Analysis - Abstract
We present a numerical comparison between two standard finite volume schemes and a discontinuous Galerkin method applied to the BGK equation of rarefied gas dynamics. We pay a particular attention to the numerical boundary conditions in order to preserve the rate of convergence of the method. Most of our analysis relies on a 1D problem (Couette flow), but we also present some results for a 2D aerodynamical flow.
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- 2020
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- View/download PDF
35. Shaping the Future of Higher Education: Practical, Community-Driven Initiatives to Improve Academic Climate
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Stachl, Christiane N, Brauer, Daniel D, Mizuno, Hikaru, Gleason, Jamie M, Rorrer, Julie E, Francis, Matthew B, and Baranger, Anne M
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Climate Action ,Chemical Sciences - Abstract
Historically, efforts to improve academic climate have been siloed-many efforts involve the collection of data to understand issues affecting diversity at an institutional level, while others prioritize recruitment and retention of historically marginalized groups. Few initiatives, however, effectively combine the two in order to create concrete action plans to eliminate structural barriers that hinder the retention of minorities in STEM. In this Editorial, we present the history and details of a collaborative effort to improve the academic climate of the Department of Chemistry at University of California, Berkeley. This initiative began in 2016 as a graduate student-led, grassroots movement to develop a method to assess the department's academic climate. Over the past several years-and with support from stakeholders at all levels-it has grown into a department-wide effort to systematically collect data, exchange ideas, and implement goal-oriented interventions to make our academic community more inclusive. With the recent development of a five-year strategic plan and funding increase to provide financial support for student-led programs, we have institutionalized a method to maintain the initiative's momentum. Here, we share our approaches, insights, and perspectives from community members who have shaped this movement. We also provide advice to help other academic communities determine a practical path toward affecting positive cultural change.
- Published
- 2021
36. Improving the Academic Climate of an R1 STEM Department: Quantified Positive Shifts in Perception
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Stachl, Christiane N, Brauer, Daniel D, Mizuno, Hikaru, Gleason, Jamie M, Francis, Matthew B, and Baranger, Anne M
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Stem Cell Research ,Chemical Engineering ,Materials Engineering - Abstract
Ongoing efforts to improve diversity in science, technology, engineering, and mathematics (STEM) primarily manifest as attempts to recruit more women and individuals from historically marginalized groups. Yet, these efforts fail to repair the specific, systemic issues within academic communities that hinder diverse individuals from persisting and thriving in STEM. Here, we present the results of a quantitative, multiyear effort to make the academic climate of an R1 STEM department more inclusive. We use a student-led, department-specific, faculty-supported initiative to assess and improve the climate of the Department of Chemistry at the University of California, Berkeley, as a case study. Our results provide quantitative evidence that community discussions grounded in our own data, alongside cooperative community efforts to address the issues present in those data, are effective methods for driving positive change. Longitudinal assessment of our academic climate from 2018 to 2020 via annual department-wide surveys indicates that these interventions have succeeded in shifting the perception of our academic climate. This study confirms the positive outcomes of having a practical, sustainable, and data-driven framework for affecting change within a graduate community.
- Published
- 2021
37. Stabilization of a Majorana Zero Mode through Quantum Frustration
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Zhang, Gu and Baranger, Harold U.
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Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
We analyze a system in which a topological Majorana zero mode (tMZM) combines with a Majorana produced by quantum frustration (fMZM) to produce a novel ground state. The system that we study combines two parts, a grounded topological superconducting wire that hosts two tMZMs at its ends, and an on-resonant quantum dot connected to two dissipative leads. The quantum dot with dissipative leads creates an effective two-channel Kondo (2CK) state in which quantum frustration yields an isolated fMZM at the dot. We find that coupling the dot to one end of the topological wire stabilizes the tMZM at the other end. Three routes are used to obtain these results: (i) calculation of the conductance through an auxiliary detector quantum dot, (ii) renormalization group (RG) arguments and the g-theorem, and (iii) a fully non-equilibrium calculation of the I(V ) curve and shot noise S(V ) through the detector dot. In addition to providing a route to achieving an unpaired Majorana zero mode, this scheme provides a clear signature of the presence of the 2CK frustration-induced Majorana., Comment: 9 pages, 2 figures
- Published
- 2019
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38. God and Paul Kahn (A Note on Political Theology)
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Denis Baranger
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Political Theology ,Carl Schmitt ,Faith ,Sacrifice ,law ,anthropology ,Law of Europe ,KJ-KKZ ,Law in general. Comparative and uniform law. Jurisprudence ,K1-7720 - Abstract
Paul Kahn has offered a fascinating account of the role of political theology in the field of law, through an exploration of some core concepts of the discipline. This article explores the nature of Kahn’s undertaking through a comparison with Carl Schmitt. The conclusion is that, rather than actual theology, Kahn’s “political theology” is a valuable form of legal anthropology anchored in an exploration of our legal culture.
- Published
- 2023
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39. Reliability of diurnal salivary cortisol metrics: A meta-analysis and investigation in two independent samples
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Norton, Sara A., Baranger, David AA., Young, Ethan S., Voss, Michaela, Hansen, Isabella, Bondy, Erin, Rodrigues, Merlyn, Paul, Sarah E., Edershile, Elizabeth, Hill, Patrick L., Oltmanns, Thomas F., Simpson, Jeffry, and Bogdan, Ryan
- Published
- 2023
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40. Research Group-Led Undergraduate Research Program: Analyzing and Improving a Versatile Springboard for First-Year Undergraduates
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Calvin, Jason J., Ondry, Justin C., Dahl, Jakob C., Sedlak, Adam B., McKeown-Green, Amy, Wang, Xingzhi, Crook, Michelle F., Gleason, Samuel P., Hauwiller, Matthew R., Baranger, Anne M., and Alivisatos, A. Paul
- Abstract
Increasing access to undergraduate research is critical in efforts to retain students pursuing careers in STEM. Alternatives to traditional research positions, such as course based undergraduate research experiences (CUREs), have played important roles in engaging more undergraduates in research. However, these opportunities are only a subset of possible nontraditional research experiences which can enrich the undergraduate experience. In this study, we critically examined and improved the research-group-led undergraduate research program (GURP) to better meet the needs of undergraduates seeking research. Specifically, we investigated if the program was successful with a greater diversity of data sets, if assessments of learning were consistent across different data sets and teaching environments, and if the program promoted student engagement in research. We have found that this model is scalable, robust, and adaptable to different implementations while producing consistent and positive learning outcomes for students. Especially remarkable are students' increased self-identification as scientists and statistically significant gains in self-perceived competency across multiple domains of knowledge. This program model has shown promising results as a partially and fully online research experience for undergraduates and has benefited program alumni in their research careers. To assist research groups starting similar programs, we have created public data sets and instructional resources. We believe that GURP programs can work in a variety of situations and hope that they can become a tool to increase interest and build communities for young researchers.
- Published
- 2022
- Full Text
- View/download PDF
41. Mismatch in Perceptions of Success: Investigating Academic Values among Faculty and Doctoral Students
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Brauer, Daniel D., Mizuno, Hikaru, Stachl, Christiane N., Gleason, Jamie M., Bumann, Sonja, Yates, Brice, Francis, Matthew B., and Baranger, Anne M.
- Abstract
Many cultural and institutional barriers have prevented chemistry from realizing greater calls for diversity in academia. Though recent work has elucidated how the measures of success used in academia can disadvantage students from underrepresented groups at the undergraduate level, thorough understanding of how success metrics are valued by minoritized students at the graduate level is lacking. Here, we use data generated from the UC Berkeley Department of Chemistry's student-led climate survey to investigate both how graduate students prioritize and how faculty employ common metrics for graduate student success. Results revealed that faculty undervalued metrics preferred by students from underrepresented groups (URGs) in STEM such as underrepresented people of color, women, LGBTQ+ students, and first-generation students. Priorities of students that do not identify as underrepresented displayed no statistically significant differences compared to faculty values. Questions regarding publication record, one of the often-used measures of success in STEM academia, suggest that graduate students, particularly those belonging to URGs, challenge the use of publication record as the primary metric of success in graduate school. These findings highlight some of the ways that definitions of academic success can be exclusionary for graduate students from underrepresented backgrounds and encourage re-envisioning graduate school success in ways that reflect the values of diverse student populations.
- Published
- 2022
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- View/download PDF
42. A large-scale genome-wide association study meta-analysis of cannabis use disorder.
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Johnson, Emma C, Demontis, Ditte, Thorgeirsson, Thorgeir E, Walters, Raymond K, Polimanti, Renato, Hatoum, Alexander S, Sanchez-Roige, Sandra, Paul, Sarah E, Wendt, Frank R, Clarke, Toni-Kim, Lai, Dongbing, Reginsson, Gunnar W, Zhou, Hang, He, June, Baranger, David AA, Gudbjartsson, Daniel F, Wedow, Robbee, Adkins, Daniel E, Adkins, Amy E, Alexander, Jeffry, Bacanu, Silviu-Alin, Bigdeli, Tim B, Boden, Joseph, Brown, Sandra A, Bucholz, Kathleen K, Bybjerg-Grauholm, Jonas, Corley, Robin P, Degenhardt, Louisa, Dick, Danielle M, Domingue, Benjamin W, Fox, Louis, Goate, Alison M, Gordon, Scott D, Hack, Laura M, Hancock, Dana B, Hartz, Sarah M, Hickie, Ian B, Hougaard, David M, Krauter, Kenneth, Lind, Penelope A, McClintick, Jeanette N, McQueen, Matthew B, Meyers, Jacquelyn L, Montgomery, Grant W, Mors, Ole, Mortensen, Preben B, Nordentoft, Merete, Pearson, John F, Peterson, Roseann E, Reynolds, Maureen D, Rice, John P, Runarsdottir, Valgerdur, Saccone, Nancy L, Sherva, Richard, Silberg, Judy L, Tarter, Ralph E, Tyrfingsson, Thorarinn, Wall, Tamara L, Webb, Bradley T, Werge, Thomas, Wetherill, Leah, Wright, Margaret J, Zellers, Stephanie, Adams, Mark J, Bierut, Laura J, Boardman, Jason D, Copeland, William E, Farrer, Lindsay A, Foroud, Tatiana M, Gillespie, Nathan A, Grucza, Richard A, Harris, Kathleen Mullan, Heath, Andrew C, Hesselbrock, Victor, Hewitt, John K, Hopfer, Christian J, Horwood, John, Iacono, William G, Johnson, Eric O, Kendler, Kenneth S, Kennedy, Martin A, Kranzler, Henry R, Madden, Pamela AF, Maes, Hermine H, Maher, Brion S, Martin, Nicholas G, McGue, Matthew, McIntosh, Andrew M, Medland, Sarah E, Nelson, Elliot C, Porjesz, Bernice, Riley, Brien P, Stallings, Michael C, Vanyukov, Michael M, Vrieze, Scott, Psychiatric Genomics Consortium Substance Use Disorders Workgroup, Davis, Lea K, Bogdan, Ryan, Gelernter, Joel, and Edenberg, Howard J
- Subjects
Psychiatric Genomics Consortium Substance Use Disorders Workgroup ,Humans ,Marijuana Abuse ,Risk ,Polymorphism ,Single Nucleotide ,Genome-Wide Association Study ,Polymorphism ,Single Nucleotide ,Clinical Sciences ,Public Health and Health Services ,Psychology - Abstract
BackgroundVariation in liability to cannabis use disorder has a strong genetic component (estimated twin and family heritability about 50-70%) and is associated with negative outcomes, including increased risk of psychopathology. The aim of the study was to conduct a large genome-wide association study (GWAS) to identify novel genetic variants associated with cannabis use disorder.MethodsTo conduct this GWAS meta-analysis of cannabis use disorder and identify associations with genetic loci, we used samples from the Psychiatric Genomics Consortium Substance Use Disorders working group, iPSYCH, and deCODE (20 916 case samples, 363 116 control samples in total), contrasting cannabis use disorder cases with controls. To examine the genetic overlap between cannabis use disorder and 22 traits of interest (chosen because of previously published phenotypic correlations [eg, psychiatric disorders] or hypothesised associations [eg, chronotype] with cannabis use disorder), we used linkage disequilibrium score regression to calculate genetic correlations.FindingsWe identified two genome-wide significant loci: a novel chromosome 7 locus (FOXP2, lead single-nucleotide polymorphism [SNP] rs7783012; odds ratio [OR] 1·11, 95% CI 1·07-1·15, p=1·84 × 10-9) and the previously identified chromosome 8 locus (near CHRNA2 and EPHX2, lead SNP rs4732724; OR 0·89, 95% CI 0·86-0·93, p=6·46 × 10-9). Cannabis use disorder and cannabis use were genetically correlated (rg 0·50, p=1·50 × 10-21), but they showed significantly different genetic correlations with 12 of the 22 traits we tested, suggesting at least partially different genetic underpinnings of cannabis use and cannabis use disorder. Cannabis use disorder was positively genetically correlated with other psychopathology, including ADHD, major depression, and schizophrenia.InterpretationThese findings support the theory that cannabis use disorder has shared genetic liability with other psychopathology, and there is a distinction between genetic liability to cannabis use and cannabis use disorder.FundingNational Institute of Mental Health; National Institute on Alcohol Abuse and Alcoholism; National Institute on Drug Abuse; Center for Genomics and Personalized Medicine and the Centre for Integrative Sequencing; The European Commission, Horizon 2020; National Institute of Child Health and Human Development; Health Research Council of New Zealand; National Institute on Aging; Wellcome Trust Case Control Consortium; UK Research and Innovation Medical Research Council (UKRI MRC); The Brain & Behavior Research Foundation; National Institute on Deafness and Other Communication Disorders; Substance Abuse and Mental Health Services Administration (SAMHSA); National Institute of Biomedical Imaging and Bioengineering; National Health and Medical Research Council (NHMRC) Australia; Tobacco-Related Disease Research Program of the University of California; Families for Borderline Personality Disorder Research (Beth and Rob Elliott) 2018 NARSAD Young Investigator Grant; The National Child Health Research Foundation (Cure Kids); The Canterbury Medical Research Foundation; The New Zealand Lottery Grants Board; The University of Otago; The Carney Centre for Pharmacogenomics; The James Hume Bequest Fund; National Institutes of Health: Genes, Environment and Health Initiative; National Institutes of Health; National Cancer Institute; The William T Grant Foundation; Australian Research Council; The Virginia Tobacco Settlement Foundation; The VISN 1 and VISN 4 Mental Illness Research, Education, and Clinical Centers of the US Department of Veterans Affairs; The 5th Framework Programme (FP-5) GenomEUtwin Project; The Lundbeck Foundation; NIH-funded Shared Instrumentation Grant S10RR025141; Clinical Translational Sciences Award grants; National Institute of Neurological Disorders and Stroke; National Heart, Lung, and Blood Institute; National Institute of General Medical Sciences.
- Published
- 2020
43. Reliability of diurnal salivary cortisol metrics: A meta-analysis and investigation in two independent samples
- Author
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Sara A. Norton, David AA. Baranger, Ethan S. Young, Michaela Voss, Isabella Hansen, Erin Bondy, Merlyn Rodrigues, Sarah E. Paul, Elizabeth Edershile, Patrick L. Hill, Thomas F. Oltmanns, Jeffry Simpson, and Ryan Bogdan
- Subjects
Cortisol ,Reliability ,Stress ,Variability ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 ,Psychology ,BF1-990 - Abstract
Stress-induced dysregulation of diurnal cortisol is a cornerstone of stress-disease theories; however, observed associations between cortisol, stress, and health have been inconsistent. The reliability of diurnal cortisol features may contribute to these equivocal findings. Our meta-analysis (5 diurnal features from 11 studies; total participant n = 3307) and investigation (15 diurnal cortisol features) in 2 independent studies (St. Louis Personality and Aging Network [SPAN] Study, n = 147, ages 61–73; Minnesota Longitudinal Study of Risk and Adaptation [MLSRA] Study, n = 90, age 37) revealed large variability in the day-to-day test-retest reliability of diurnal features derived from salivary cortisol data (i.e., ICC = 0.00–0.75). Collectively, these data indicate that some commonly used diurnal cortisol features have poor reliability that is insufficient for individual differences research (e.g., cortisol awakening response) while others (e.g., area under the curve with respect to ground) have fair-to-good reliability that could support reliable identification of associations in well-powered studies.
- Published
- 2023
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- View/download PDF
44. Impact of Ventricular Geometric Characteristics on Myocardial Stiffness Assessment Using Shear-Wave Velocity in Healthy Children and Young Adults
- Author
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Malik, Aimen, Baranger, Jerome, Nguyen, Minh Bao, Slorach, Cameron, Hui, Wei, Villalobos Lizardi, José Carlos, Venet, Maelys, Friedberg, Mark K., Mertens, Luc, and Villemain, Olivier
- Published
- 2023
- Full Text
- View/download PDF
45. Interference of chiral Andreev edge states
- Author
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Zhao, Lingfei, Arnault, Ethan G., Bondarev, Alexey, Seredinski, Andrew, Larson, Trevyn, Draelos, Anne W., Li, Hengming, Watanabe, Kenji, Taniguchi, Takashi, Amet, François, Baranger, Harold U., and Finkelstein, Gleb
- Subjects
Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Superconductivity ,Quantum Physics - Abstract
The search for topological excitations such as Majorana fermions has spurred interest in the boundaries between distinct quantum states. Here, we explore an interface between two prototypical phases of electrons with conceptually different ground states: the integer quantum Hall insulator and the s-wave superconductor. We find clear signatures of hybridized electron and hole states similar to chiral Majorana fermions, to which we refer as chiral Andreev edge states (CAES). They propagate along the interface in the direction determined by magnetic field and their interference can turn an incoming electron into an outgoing electron or a hole, depending on the phase accumulated by the CAES along their path. Our results demonstrate that these excitations can propagate and interfere over a significant length, opening future possibilities for their coherent manipulation., Comment: Main: 3 figures; Supplementary: 12 figures
- Published
- 2019
- Full Text
- View/download PDF
46. Sense of belonging within the graduate community of a research-focused STEM department: Quantitative assessment using a visual narrative and item response theory.
- Author
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Stachl, Christiane N and Baranger, Anne M
- Subjects
General Science & Technology - Abstract
It is well-documented that the representation of women and racial/ethnic minorities diminishes at higher levels of academia, particularly in science, technology, engineering, and math (STEM). Sense of belonging-the extent to which an individual believes they are accepted, valued, and included in a community-is often emphasized as an important predictor of retention throughout academia. While literature addressing undergraduate sense of belonging is abundant, there has been little investigation of sense of belonging in graduate communities. Because graduate training is required to generate new scientific leaders, it is important to understand and address sense of belonging at the graduate level-paying explicit attention to devising strategies that can be used to increase representation at higher levels of academia. Here, a visual narrative survey and item response modeling are used to quantify sense of belonging among graduate students, postdoctoral researchers, and faculty within the Department of Chemistry at the University of California, Berkeley. Results suggest that graduate students, postdoctoral researchers, and faculty all experience impostor phenomenon. Respondents struggle most with maintaining positive self-perceptions of their productivity, capabilities as a scientist, and success-particularly in comparison to their peers. Communicating about science with peers, talking about teaching hurdles, and engaging in mentoring relationships also contribute significantly to sense of belonging. Faculty members have the highest sense of belonging, while senior graduate students and postdoctoral researchers are least likely to feel a sense of belonging. Additionally, graduate students and postdoctoral researchers who identify as underrepresented, as well as those who submit manuscripts for publication less than their peers, are less likely to feel a sense of belonging. This is the first study to generate a quantitative, nuanced understanding of sense of belonging within the entire graduate academic community of an R1 STEM department. We envision that these methods can be implemented within any research-focused academic unit to better understand the challenges facing community members and identify factors to address in promoting positive culture change. Furthermore, these methods and results should provide a foundation for devising interventions that academic stakeholders can use to directly improve graduate education.
- Published
- 2020
47. TRY plant trait database – enhanced coverage and open access
- Author
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Kattge, Jens, Bönisch, Gerhard, Díaz, Sandra, Lavorel, Sandra, Prentice, Iain Colin, Leadley, Paul, Tautenhahn, Susanne, Werner, Gijsbert DA, Aakala, Tuomas, Abedi, Mehdi, Acosta, Alicia TR, Adamidis, George C, Adamson, Kairi, Aiba, Masahiro, Albert, Cécile H, Alcántara, Julio M, C, Carolina Alcázar, Aleixo, Izabela, Ali, Hamada, Amiaud, Bernard, Ammer, Christian, Amoroso, Mariano M, Anand, Madhur, Anderson, Carolyn, Anten, Niels, Antos, Joseph, Apgaua, Deborah Mattos Guimarães, Ashman, Tia‐Lynn, Asmara, Degi Harja, Asner, Gregory P, Aspinwall, Michael, Atkin, Owen, Aubin, Isabelle, Baastrup‐Spohr, Lars, Bahalkeh, Khadijeh, Bahn, Michael, Baker, Timothy, Baker, William J, Bakker, Jan P, Baldocchi, Dennis, Baltzer, Jennifer, Banerjee, Arindam, Baranger, Anne, Barlow, Jos, Barneche, Diego R, Baruch, Zdravko, Bastianelli, Denis, Battles, John, Bauerle, William, Bauters, Marijn, Bazzato, Erika, Beckmann, Michael, Beeckman, Hans, Beierkuhnlein, Carl, Bekker, Renee, Belfry, Gavin, Belluau, Michael, Beloiu, Mirela, Benavides, Raquel, Benomar, Lahcen, Berdugo‐Lattke, Mary Lee, Berenguer, Erika, Bergamin, Rodrigo, Bergmann, Joana, Carlucci, Marcos Bergmann, Berner, Logan, Bernhardt‐Römermann, Markus, Bigler, Christof, Bjorkman, Anne D, Blackman, Chris, Blanco, Carolina, Blonder, Benjamin, Blumenthal, Dana, Bocanegra‐González, Kelly T, Boeckx, Pascal, Bohlman, Stephanie, Böhning‐Gaese, Katrin, Boisvert‐Marsh, Laura, Bond, William, Bond‐Lamberty, Ben, Boom, Arnoud, Boonman, Coline CF, Bordin, Kauane, Boughton, Elizabeth H, Boukili, Vanessa, Bowman, David MJS, Bravo, Sandra, Brendel, Marco Richard, Broadley, Martin R, Brown, Kerry A, Bruelheide, Helge, Brumnich, Federico, Bruun, Hans Henrik, Bruy, David, Buchanan, Serra W, Bucher, Solveig Franziska, Buchmann, Nina, Buitenwerf, Robert, Bunker, Daniel E, and Bürger, Jana
- Subjects
Climate Change Impacts and Adaptation ,Biological Sciences ,Ecology ,Environmental Sciences ,Access to Information ,Biodiversity ,Ecosystem ,Plants ,data coverage ,data integration ,data representativeness ,functional diversity ,plant traits ,TRY plant trait database ,Nutrient Network ,Biological sciences ,Earth sciences ,Environmental sciences - Abstract
Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives.
- Published
- 2020
48. The influence of internal defects on the mechanical behavior of filament wound SiC/SiC composite tubes under uniaxial tension
- Author
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Morel, C., Baranger, E., Lamon, J., Braun, J., and Lorrette, C.
- Published
- 2023
- Full Text
- View/download PDF
49. Assessing engineered tissues and biomaterials using ultrasound imaging: In vitro and in vivo applications
- Author
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Sebastian, Joseph A., Strohm, Eric M., Baranger, Jérôme, Villemain, Olivier, Kolios, Michael C., and Simmons, Craig A.
- Published
- 2023
- Full Text
- View/download PDF
50. Tensile strength analysis and fractography on single nuclear grade SiC fibers at room temperature
- Author
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Barbosa, L.C.M., Lorrette, C., Le Bras, S., Baranger, E., and Lamon, J.
- Published
- 2023
- Full Text
- View/download PDF
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