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1. Towards Cross-Lingual LLM Evaluation for European Languages

Author

Thellmann, Klaudia, Stadler, Bernhard, Fromm, Michael, Buschhoff, Jasper Schulze, Jude, Alex, Barth, Fabio, Leveling, Johannes, Flores-Herr, Nicolas, Köhler, Joachim, Jäkel, René, and Ali, Mehdi

Subjects
Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning
Abstract

The rise of Large Language Models (LLMs) has revolutionized natural language processing across numerous languages and tasks. However, evaluating LLM performance in a consistent and meaningful way across multiple European languages remains challenging, especially due to the scarcity of multilingual benchmarks. We introduce a cross-lingual evaluation approach tailored for European languages. We employ translated versions of five widely-used benchmarks to assess the capabilities of 40 LLMs across 21 European languages. Our contributions include examining the effectiveness of translated benchmarks, assessing the impact of different translation services, and offering a multilingual evaluation framework for LLMs that includes newly created datasets: EU20-MMLU, EU20-HellaSwag, EU20-ARC, EU20-TruthfulQA, and EU20-GSM8K. The benchmarks and results are made publicly available to encourage further research in multilingual LLM evaluation.

Published
2024

2. Progress Report: Towards European LLMs

Author

Ali, Mehdi, Fromm, Michael, Thellmann, Klaudia, Ebert, Jan, Weber, Alexander Arno, Rutmann, Richard, Jain, Charvi, Lübbering, Max, Steinigen, Daniel, Leveling, Johannes, Klug, Katrin, Buschhoff, Jasper Schulze, Jurkschat, Lena, Abdelwahab, Hammam, Stein, Benny Jörg, Sylla, Karl-Heinz, Denisov, Pavel, Brandizzi, Nicolo, Saleem, Qasid, Anirban, Bhowmick, John, Chelsea, Suarez, Pedro Ortiz, Ostendorff, Malte, Jude, Alex, Manjunath, Lalith, Weinbach, Samuel, Penke, Carolin, Asaadi, Shima, Barth, Fabio, Sifa, Rafet, Küch, Fabian, Jäkel, René, Rehm, Georg, Kesselheim, Stefan, Köhler, Joachim, and Flores-Herr, Nicolas

Subjects
Computer Science - Computation and Language, Computer Science - Artificial Intelligence, Computer Science - Machine Learning
Abstract

We present preliminary results of the project OpenGPT-X. At present, the project has developed two multilingual LLMs designed to embrace Europe's linguistic diversity by supporting all 24 official languages of the European Union. Trained on a dataset comprising around 60% non-English data and utilizing a custom multilingual tokenizer, our models address the limitations of existing LLMs that predominantly focus on English or a few high-resource languages. We detail the models' development principles, data processing techniques, tokenizer optimization, and training methodologies. The models demonstrate competitive performance across multilingual benchmarks, as evidenced by its performance on European versions of ARC, HellaSwag, MMLU, and TruthfulQA.

Published
2024

3. MENINGITES BACTERIANAS ASPECTOS INTRODUTORIOS E PROFILÁTICOS

Author

Netto, Felício de Freitas, primary, Gehring, Gabriela Margraf, additional, Mansani, Fabiana Postiglione, additional, Cordeiro, Tatiana Menezes Garcia, additional, Benitez, Jenifer Gabrielle, additional, Mayer, Rodrigo, additional, Machado, Lohana Gabriele Penazzo, additional, Gomes, Ricardo Zanetti, additional, Derbli, Eloísa Schroeder, additional, Jecohti, Vivian Missima, additional, Bonatto, Simonei, additional, Borges, Siwane Isoton, additional, Seleme, Sâmia Bizerril, additional, Higaki, Yoshimitsu Ozima, additional, Hanke, Polyana Yasmin, additional, Karpinski, Pedro, additional, Ienke, Matheus Gaioski, additional, Souza, Luane Santana de Jesus, additional, Matkovski, Jorge Antônio, additional, Fante, Gustavo Eduardo, additional, Rickli, Guilherme Angelo Faria, additional, Barth, Fabio Vinicius, additional, Maique, Gracieli Maria Canani, additional, Silva, Brenda Evelyn Canani, additional, Brogiatto, Bruno Antunes, additional, Proença, Natã de Jesus, additional, Consul, Crisangela, additional, Spinassi, Laís Cristina Zinser, additional, Sousa, Carolina Bacila de, additional, Cleto, André Saad, additional, and Castro, Ana Cristina Barth de, additional

Published
2024
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4. BLOOM: A 176B-Parameter Open-Access Multilingual Language Model

Author

Workshop, BigScience, Scao, Teven Le, Fan, Angela, Akiki, Christopher, Pavlick, Ellie, Ilić, Suzana, Hesslow, Daniel, Castagné, Roman, Luccioni, Alexandra Sasha, Yvon, François, Gallé, Matthias, Tow, Jonathan, Rush, Alexander M., Biderman, Stella, Webson, Albert, Ammanamanchi, Pawan Sasanka, Wang, Thomas, Sagot, Benoît, Muennighoff, Niklas, del Moral, Albert Villanova, Ruwase, Olatunji, Bawden, Rachel, Bekman, Stas, McMillan-Major, Angelina, Beltagy, Iz, Nguyen, Huu, Saulnier, Lucile, Tan, Samson, Suarez, Pedro Ortiz, Sanh, Victor, Laurençon, Hugo, Jernite, Yacine, Launay, Julien, Mitchell, Margaret, Raffel, Colin, Gokaslan, Aaron, Simhi, Adi, Soroa, Aitor, Aji, Alham Fikri, Alfassy, Amit, Rogers, Anna, Nitzav, Ariel Kreisberg, Xu, Canwen, Mou, Chenghao, Emezue, Chris, Klamm, Christopher, Leong, Colin, van Strien, Daniel, Adelani, David Ifeoluwa, Radev, Dragomir, Ponferrada, Eduardo González, Levkovizh, Efrat, Kim, Ethan, Natan, Eyal Bar, De Toni, Francesco, Dupont, Gérard, Kruszewski, Germán, Pistilli, Giada, Elsahar, Hady, Benyamina, Hamza, Tran, Hieu, Yu, Ian, Abdulmumin, Idris, Johnson, Isaac, Gonzalez-Dios, Itziar, de la Rosa, Javier, Chim, Jenny, Dodge, Jesse, Zhu, Jian, Chang, Jonathan, Frohberg, Jörg, Tobing, Joseph, Bhattacharjee, Joydeep, Almubarak, Khalid, Chen, Kimbo, Lo, Kyle, Von Werra, Leandro, Weber, Leon, Phan, Long, allal, Loubna Ben, Tanguy, Ludovic, Dey, Manan, Muñoz, Manuel Romero, Masoud, Maraim, Grandury, María, Šaško, Mario, Huang, Max, Coavoux, Maximin, Singh, Mayank, Jiang, Mike Tian-Jian, Vu, Minh Chien, Jauhar, Mohammad A., Ghaleb, Mustafa, Subramani, Nishant, Kassner, Nora, Khamis, Nurulaqilla, Nguyen, Olivier, Espejel, Omar, de Gibert, Ona, Villegas, Paulo, Henderson, Peter, Colombo, Pierre, Amuok, Priscilla, Lhoest, Quentin, Harliman, Rheza, Bommasani, Rishi, López, Roberto Luis, Ribeiro, Rui, Osei, Salomey, Pyysalo, Sampo, Nagel, Sebastian, Bose, Shamik, Muhammad, Shamsuddeen Hassan, Sharma, Shanya, Longpre, Shayne, Nikpoor, Somaieh, Silberberg, Stanislav, Pai, Suhas, Zink, Sydney, Torrent, Tiago Timponi, Schick, Timo, Thrush, Tristan, Danchev, Valentin, Nikoulina, Vassilina, Laippala, Veronika, Lepercq, Violette, Prabhu, Vrinda, Alyafeai, Zaid, Talat, Zeerak, Raja, Arun, Heinzerling, Benjamin, Si, Chenglei, Taşar, Davut Emre, Salesky, Elizabeth, Mielke, Sabrina J., Lee, Wilson Y., Sharma, Abheesht, Santilli, Andrea, Chaffin, Antoine, Stiegler, Arnaud, Datta, Debajyoti, Szczechla, Eliza, Chhablani, Gunjan, Wang, Han, Pandey, Harshit, Strobelt, Hendrik, Fries, Jason Alan, Rozen, Jos, Gao, Leo, Sutawika, Lintang, Bari, M Saiful, Al-shaibani, Maged S., Manica, Matteo, Nayak, Nihal, Teehan, Ryan, Albanie, Samuel, Shen, Sheng, Ben-David, Srulik, Bach, Stephen H., Kim, Taewoon, Bers, Tali, Fevry, Thibault, Neeraj, Trishala, Thakker, Urmish, Raunak, Vikas, Tang, Xiangru, Yong, Zheng-Xin, Sun, Zhiqing, Brody, Shaked, Uri, Yallow, Tojarieh, Hadar, Roberts, Adam, Chung, Hyung Won, Tae, Jaesung, Phang, Jason, Press, Ofir, Li, Conglong, Narayanan, Deepak, Bourfoune, Hatim, Casper, Jared, Rasley, Jeff, Ryabinin, Max, Mishra, Mayank, Zhang, Minjia, Shoeybi, Mohammad, Peyrounette, Myriam, Patry, Nicolas, Tazi, Nouamane, Sanseviero, Omar, von Platen, Patrick, Cornette, Pierre, Lavallée, Pierre François, Lacroix, Rémi, Rajbhandari, Samyam, Gandhi, Sanchit, Smith, Shaden, Requena, Stéphane, Patil, Suraj, Dettmers, Tim, Baruwa, Ahmed, Singh, Amanpreet, Cheveleva, Anastasia, Ligozat, Anne-Laure, Subramonian, Arjun, Névéol, Aurélie, Lovering, Charles, Garrette, Dan, Tunuguntla, Deepak, Reiter, Ehud, Taktasheva, Ekaterina, Voloshina, Ekaterina, Bogdanov, Eli, Winata, Genta Indra, Schoelkopf, Hailey, Kalo, Jan-Christoph, Novikova, Jekaterina, Forde, Jessica Zosa, Clive, Jordan, Kasai, Jungo, Kawamura, Ken, Hazan, Liam, Carpuat, Marine, Clinciu, Miruna, Kim, Najoung, Cheng, Newton, Serikov, Oleg, Antverg, Omer, van der Wal, Oskar, Zhang, Rui, Zhang, Ruochen, Gehrmann, Sebastian, Mirkin, Shachar, Pais, Shani, Shavrina, Tatiana, Scialom, Thomas, Yun, Tian, Limisiewicz, Tomasz, Rieser, Verena, Protasov, Vitaly, Mikhailov, Vladislav, Pruksachatkun, Yada, Belinkov, Yonatan, Bamberger, Zachary, Kasner, Zdeněk, Rueda, Alice, Pestana, Amanda, Feizpour, Amir, Khan, Ammar, Faranak, Amy, Santos, Ana, Hevia, Anthony, Unldreaj, Antigona, Aghagol, Arash, Abdollahi, Arezoo, Tammour, Aycha, HajiHosseini, Azadeh, Behroozi, Bahareh, Ajibade, Benjamin, Saxena, Bharat, Ferrandis, Carlos Muñoz, McDuff, Daniel, Contractor, Danish, Lansky, David, David, Davis, Kiela, Douwe, Nguyen, Duong A., Tan, Edward, Baylor, Emi, Ozoani, Ezinwanne, Mirza, Fatima, Ononiwu, Frankline, Rezanejad, Habib, Jones, Hessie, Bhattacharya, Indrani, Solaiman, Irene, Sedenko, Irina, Nejadgholi, Isar, Passmore, Jesse, Seltzer, Josh, Sanz, Julio Bonis, Dutra, Livia, Samagaio, Mairon, Elbadri, Maraim, Mieskes, Margot, Gerchick, Marissa, Akinlolu, Martha, McKenna, Michael, Qiu, Mike, Ghauri, Muhammed, Burynok, Mykola, Abrar, Nafis, Rajani, Nazneen, Elkott, Nour, Fahmy, Nour, Samuel, Olanrewaju, An, Ran, Kromann, Rasmus, Hao, Ryan, Alizadeh, Samira, Shubber, Sarmad, Wang, Silas, Roy, Sourav, Viguier, Sylvain, Le, Thanh, Oyebade, Tobi, Le, Trieu, Yang, Yoyo, Nguyen, Zach, Kashyap, Abhinav Ramesh, Palasciano, Alfredo, Callahan, Alison, Shukla, Anima, Miranda-Escalada, Antonio, Singh, Ayush, Beilharz, Benjamin, Wang, Bo, Brito, Caio, Zhou, Chenxi, Jain, Chirag, Xu, Chuxin, Fourrier, Clémentine, Periñán, Daniel León, Molano, Daniel, Yu, Dian, Manjavacas, Enrique, Barth, Fabio, Fuhrimann, Florian, Altay, Gabriel, Bayrak, Giyaseddin, Burns, Gully, Vrabec, Helena U., Bello, Imane, Dash, Ishani, Kang, Jihyun, Giorgi, John, Golde, Jonas, Posada, Jose David, Sivaraman, Karthik Rangasai, Bulchandani, Lokesh, Liu, Lu, Shinzato, Luisa, de Bykhovetz, Madeleine Hahn, Takeuchi, Maiko, Pàmies, Marc, Castillo, Maria A, Nezhurina, Marianna, Sänger, Mario, Samwald, Matthias, Cullan, Michael, Weinberg, Michael, De Wolf, Michiel, Mihaljcic, Mina, Liu, Minna, Freidank, Moritz, Kang, Myungsun, Seelam, Natasha, Dahlberg, Nathan, Broad, Nicholas Michio, Muellner, Nikolaus, Fung, Pascale, Haller, Patrick, Chandrasekhar, Ramya, Eisenberg, Renata, Martin, Robert, Canalli, Rodrigo, Su, Rosaline, Su, Ruisi, Cahyawijaya, Samuel, Garda, Samuele, Deshmukh, Shlok S, Mishra, Shubhanshu, Kiblawi, Sid, Ott, Simon, Sang-aroonsiri, Sinee, Kumar, Srishti, Schweter, Stefan, Bharati, Sushil, Laud, Tanmay, Gigant, Théo, Kainuma, Tomoya, Kusa, Wojciech, Labrak, Yanis, Bajaj, Yash Shailesh, Venkatraman, Yash, Xu, Yifan, Xu, Yingxin, Xu, Yu, Tan, Zhe, Xie, Zhongli, Ye, Zifan, Bras, Mathilde, Belkada, Younes, and Wolf, Thomas

Subjects
Computer Science - Computation and Language
Abstract

Large language models (LLMs) have been shown to be able to perform new tasks based on a few demonstrations or natural language instructions. While these capabilities have led to widespread adoption, most LLMs are developed by resource-rich organizations and are frequently kept from the public. As a step towards democratizing this powerful technology, we present BLOOM, a 176B-parameter open-access language model designed and built thanks to a collaboration of hundreds of researchers. BLOOM is a decoder-only Transformer language model that was trained on the ROOTS corpus, a dataset comprising hundreds of sources in 46 natural and 13 programming languages (59 in total). We find that BLOOM achieves competitive performance on a wide variety of benchmarks, with stronger results after undergoing multitask prompted finetuning. To facilitate future research and applications using LLMs, we publicly release our models and code under the Responsible AI License.

Published
2022

5. BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing

Author

Fries, Jason Alan, Weber, Leon, Seelam, Natasha, Altay, Gabriel, Datta, Debajyoti, Garda, Samuele, Kang, Myungsun, Su, Ruisi, Kusa, Wojciech, Cahyawijaya, Samuel, Barth, Fabio, Ott, Simon, Samwald, Matthias, Bach, Stephen, Biderman, Stella, Sänger, Mario, Wang, Bo, Callahan, Alison, Periñán, Daniel León, Gigant, Théo, Haller, Patrick, Chim, Jenny, Posada, Jose David, Giorgi, John Michael, Sivaraman, Karthik Rangasai, Pàmies, Marc, Nezhurina, Marianna, Martin, Robert, Cullan, Michael, Freidank, Moritz, Dahlberg, Nathan, Mishra, Shubhanshu, Bose, Shamik, Broad, Nicholas Michio, Labrak, Yanis, Deshmukh, Shlok S, Kiblawi, Sid, Singh, Ayush, Vu, Minh Chien, Neeraj, Trishala, Golde, Jonas, del Moral, Albert Villanova, and Beilharz, Benjamin

Subjects
Computer Science - Computation and Language
Abstract

Training and evaluating language models increasingly requires the construction of meta-datasets --diverse collections of curated data with clear provenance. Natural language prompting has recently lead to improved zero-shot generalization by transforming existing, supervised datasets into a diversity of novel pretraining tasks, highlighting the benefits of meta-dataset curation. While successful in general-domain text, translating these data-centric approaches to biomedical language modeling remains challenging, as labeled biomedical datasets are significantly underrepresented in popular data hubs. To address this challenge, we introduce BigBIO a community library of 126+ biomedical NLP datasets, currently covering 12 task categories and 10+ languages. BigBIO facilitates reproducible meta-dataset curation via programmatic access to datasets and their metadata, and is compatible with current platforms for prompt engineering and end-to-end few/zero shot language model evaluation. We discuss our process for task schema harmonization, data auditing, contribution guidelines, and outline two illustrative use cases: zero-shot evaluation of biomedical prompts and large-scale, multi-task learning. BigBIO is an ongoing community effort and is available at https://github.com/bigscience-workshop/biomedical, Comment: Submitted to NeurIPS 2022 Datasets and Benchmarks Track

Published
2022

7. I Congresso Sul-Brasileiro Interligas do Aparelho Digestivo

Author

Pinto, Débora Mota, primary, Santos, Aléxia Oro dos, additional, Fleig, Ana Carolina, additional, Souza, Luana Rocha de, additional, Faria, Felipe Silveira de, additional, Almeida, Larissa Wábia Santana de, additional, Santos, Letícia Andrade, additional, Barreto, Manuela Naiane Lima, additional, Leite, Débora Cristina Fontes, additional, Nascimento, Girleide Santos do, additional, Silva, Kelvyn Kennedy de Figueiredo, additional, Nunes, Elicarlos Marques, additional, Benedito, Karen Sabrina Moreira, additional, Murata, Aline Akemi, additional, Bigaran, Larissa Toloy, additional, Fiori, Sthéfani Roberta Marques, additional, Barbosa, Talita Costa, additional, Fagundes, Daniella Soares, additional, Rodrigues, João Víctor Cordeiro, additional, Rocha, Josiane Santos Brant, additional, Contato, João Henrique Jaros, additional, Cunha, Victor Hugo da, additional, Rangel, Marcel Pereira, additional, Benedetti, Carolina Borges, additional, Carneiro, Carlos André dos Santos, additional, Nunes, Ianne Layla Santos, additional, Magnanti, João Tales, additional, Silva, Yasmin Podlasinski da, additional, Peres, Luciane Marina Léa Zini, additional, Stefanello, Carolina, additional, Gasperin, Glauber, additional, Albuquerque, Paulo Fernando Aires de, additional, Castro, Ana Cristina Barth de, additional, Barth, Fabio Vinicius, additional, Parlow, Jaqueline Meert, additional, Polay, João Pedro Gambetta, additional, Andrade, Luiz Henrique Vargas de, additional, Dalazoana, Elder, additional, Santos, Sara Brandão dos, additional, Brandão, Fernando Barbosa, additional, Lopes, Pedro Augusto de Moraes, additional, Ferreira, Gabriela Milhomem, additional, Poloniato, Luiz Felipe Castro Vaz, additional, Goulart, Marcela Ribeiro, additional, Coutinho, Nívea Maria Carvalho, additional, Domingos, Karen Thalyne Pereira e Silva, additional, Lima, Maria Raquel da Silva, additional, Holanda, Lara Goulart, additional, Menezes, Orlando Bezerra de, additional, Almeida, Thomás Kassouf de, additional, Santos, Gerusa Matias dos, additional, Freitas, Victor Buchini de, additional, Carvalho, Vitor Augusto Pereira de, additional, Rodrigues, Marco Antônio Gonçalves, additional, Resende, Júlio Sergio Lara, additional, Santos, Mariusi Glasenapp dos, additional, Chagas, Gabriel de Souza, additional, Souza, Letícia Faria de, additional, Oliveira, Pedro Afonso Alves de, additional, Schilling, Sharly Nataly Storch, additional, Ngankak, Rosy lvine Chindje, additional, Lima, Beatriz Alves, additional, Lima, Bruna Alves, additional, Carneiro, Leonam, additional, Oliveira, Munir Tayfour, additional, Araújo, Nathália Rebouças da Costa, additional, Carmo, Rafael Leão, additional, Marinho, Taynara Gonçalves, additional, Raulino, Gabriella Rabello, additional, Souza, Janaína Pereira Barbosa de, additional, Ottoni, Letícia de Castro, additional, Figueiredo, Rafaella Moniza Bento Palmeira, additional, Schaiblich, Hadla, additional, Pires, Marília Karolyne Dias, additional, Vieira, Doralina Cristina, additional, Duarte, Larissa Rocha Alipio, additional, Souza, Carolina Mibielli de, additional, Frois, Mariana Madureira, additional, Menezes, Érica Godinho, additional, Tiboni, Marcela, additional, Antonelli, Lara Raiany Laguna, additional, Miszczuk, Flavia Oyadomari, additional, Moraes, Maria Luiza Fucuta de, additional, Rohden, Gabriel Vinícius, additional, Inoue, Karina Ayana Matioli, additional, Ferreira, Katrine de Souza, additional, Shimizu, Bruno Sadayoshi Lara, additional, Lopes, Layane Aiala de Sousa, additional, Geaquinto, Guilherme, additional, Sousa, Andressa Mendes de, additional, Batista, Estela Tebaldi, additional, Sousa, Liliane Emilly dos Santos, additional, Leão-Cordeiro, Jacqueline Andréia Bernardes, additional, Silva, Antônio Márcio Teodoro Cordeiro, additional, Queiroz, Wemerson Geraldo de, additional, Santos, Juliano Xavier, additional, Martins, Rafael Krieger, additional, Bombonatto, Alan Patrick, additional, Costa, Igor Dal Pozzo, additional, Silva, Rebeca Silvestre Chaves, additional, Ely, Carolina Scheer, additional, Hatem, Lamys Azanki, additional, and Dacroce, Vitória Tischer, additional

Published
2021
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9. Pesquisas e Ações em Saúde Pública - Volume 2

Author

Santos, Maria Paula Bernardo dos, primary, Branco, Franciane Ferreira Maziero, additional, Fernandes, Jéssica Moreira, additional, Ferreira, Larissa Brazolotto, additional, Silva, Letícia Aparecida de Souza, additional, Silva, Luana Pereira da, additional, Lima, Lucas Satto de, additional, Nascimento, Mirela Martines do, additional, Fardin, Eduardo, additional, Poleto, Ana Paula, additional, Seganfredo, Afonso Alencar de Souza, additional, Lottici, Gabriel, additional, Burg, Maria Renita, additional, Silva, Leticia Aparecida de Souza, additional, Silva, Isabela Ramos da, additional, Lima, Maiara Matos, additional, Santos, Maria Paula Bernardo dos, additional, Catelan, Daniele, additional, Cardoso, Luiza Buchemi, additional, Menino, Ester Olívia de Oliveira, additional, Silva, Ítala Gouvêa, additional, Paula, Ana Beatriz Caldeira de, additional, Alessandretti, Mariana, additional, Andrade, Raquel Leite de, additional, Nunes, Fernanda Freire Campos, additional, Polay, João Pedro Gambetta, additional, Barth, Fabio Vinicius, additional, Cardoso, Bianca Cristina, additional, Castro, Ana Cristina Barth De, additional, Lima, Hailyn Ribas De, additional, Parlow, Jaqueline Meert, additional, Fonseca, Mariana, additional, Dalazoana, Elder, additional, Santos, Yasmim Brick, additional, Andrade, Luiz Henrique Vargas De, additional, Fernandes, Márcia A, additional, Magalhães, Juliana Macêdo, additional, Neta, Marly Marques Rêgo, additional, Sousa, Silvelene Carneiro De, additional, Ribeiro, Ítalo Arão Pereira, additional, Silva, Joyce Soares E, additional, Ribeiro, Amanda Alves de Alencar, additional, Fernandes, Márcia Astrês, additional, Rocha, Edna Monteiro, additional, Carvalho, Cláudia Maria Sousa de, additional, Ribeiro, Amanda Alves De Alencar, additional, Oliveira, Letícia Reis De, additional, Ferraz, Mônica Madeira Martins, additional, Araújo, Agostinho Antônio Cruz, additional, Santos, Letícia Viana dos, additional, Vilanova, Thâmara Beatriz Fernandes, additional, Santos, Lourenny Souza Dos, additional, Oliveira, Itana Nogueira De Araújo E, additional, Santos, Lourdes Beatriz Bispo Gonzaga, additional, Souza, Ana Clara Oliveira, additional, Uchôa, Lucas R, additional, Macedo, Raimundo Gierdson Abreu, additional, Rocha, Alexandre Fernando Rodrigues, additional, Oliveira, Lanielle de Sousa Brito, additional, Oliveira, Camila de Castro, additional, Santos, José M da S, additional, Oliveira, Gabriela Alves de, additional, Costa, Claylton de Abreu, additional, Rameiro, Iara Gabriele Lima, additional, Costa, Sidilene Pereira, additional, Sobrinho, Weberton Dorásio, additional, Loiola, Elissandra Ferreira, additional, Costa, Beatriz Campos, additional, Pacífico, Kassio dos Santos, additional, Oliveira, Maria Eduarda Ferreira de, additional, Marques, Gustavo Wenzel da Mata Monteiro, additional, Ferreira, Leonardo Gomes, additional, Souza, Esther Cardoso dos Santos, additional, Lima, Mariana Viandelli Correia, additional, Oliveira, Marcos Divino de, additional, Dias, Kamila Vieira, additional, Sampaio, Matheus Vieira, additional, Silva, Anita de Souza, additional, Mendonça, Karen Duanny Santos Barbosa, additional, Bispo, Elisa Maria Pacheco, additional, Varjão, Raiane Castor, additional, Oliveira, Linda Helena Jordão, additional, Nunes, Geyanna Dolores Lopes, additional, Campos, Roseane Nunes de Santana, additional, Schaffer, Débora Passos Hinojosa, additional, Sidrim, Gustavo Henrique Silva, additional, Coutinho, Maria Vitoria, additional, Modesto, Acsa Carvalho Andrade, additional, Coutinho, Lincon Manoel, additional, Silva, Wilson Santana, additional, Souza, Alice Ferreira Tomaz De, additional, Ferreira, Gabriella Lucas Da Cruz, additional, Caetano, Racquel Firpe, additional, Vilefort, Laís Assunção, additional, Oliveira, Mysma Vidal De, additional, Gonçalves, Andressa Simonassi, additional, Nascimento, Thayná Barbosa Do, additional, Silva, Laiane Cristina De Camargos, additional, Alves, Ana Eloísa Silva, additional, Carmo, Davi Fernandes Do, additional, Mello, Giovanna Galli Tonon De, additional, Coelho, Mateus Sampaio, additional, Gomes, Gabriela Somma, additional, Oliveira, Gabriely de, additional, Bertoldi, Gustavo Henrique Sumnienski, additional, Passos, Isabela de Araújo Belo, additional, Yamada, Isabela Yurie, additional, Rodrigues, Joanna Lara Castelo, additional, Frare, Letícia Elen Carpenedo, additional, Silva, Angel Adriany da, additional, Guerreiro, Milena Gonçalves, additional, Morioka, Mary, additional, Matos, Silvia Regina Seibel de, additional, Pinheiro, Sofia Landim Teixeirense, additional, Sales, Emilyn Vitória Brígido, additional, Passos, Danielle Cecato De Almeida, additional, Gois, Edson Santana, additional, Menezes, Ana Luiza Almeida, additional, Santos, Bruna Passos, additional, Melo, Bianca Santos, additional, Santos, Vitória Dias Dos, additional, Santos, Eduarda Lavínia Carneiro, additional, Santos, Beatriz Oliveira, additional, Melo, João Victor Santos, additional, Souza, Júllia Beatriz Araujo, additional, Nascimento, Leila Maria Lemos, additional, Medina, Mariana Sattler Lima, additional, Oliveira, Rosa Carolina Santos De, additional, Oliveira, Halley Ferraro, additional, Castro, Luana Fernandes Da Silva Oliveira, additional, Santos, Geovanna Godinho, additional, Dantas, Camila Flor, additional, Zoccoli, Thanyra Beatrice Vicentini, additional, Avelino, Thiago Dante Lustosa Da Rocha, additional, Macedo, Ana Clara Wimmer, additional, Fernandes, Fernanda Rodrigues Mangabeira, additional, Silva, Laura Teresa Lopes, additional, Vinhal, Letícia Dutra Magalhães, additional, Redígulo, Tayná Boldoni, additional, Ramsdorf, Maria Theresa De Alencar, additional, Lenhardt, Debora Giachini, additional, Pereira, Luiz Fernando Benazet De Assunção, additional, Oliveira, Camilla Haddad, additional, Souza, Kamilla Menezes E, additional, Silva, Letícia Angélica Da, additional, Silva, Pedro Henrique Fonseca Da, additional, Uehara, Gabriela Mayumi, additional, Castro, Luis Henrique Almeida, additional, Monteiro, Tiago Araújo, additional, Aguiar, Gladson Lopes De, additional, Oliveira, Erick Michell Bezerra, additional, Pinheiro, Marcos Vinicius Santos, additional, Jacinto, Izadora De Oliveira Almeida, additional, Araújo, Kassie Laís De Sousa, additional, Oliveira, Ianara Sousa De, additional, Silva, Ataianny Takira Galisa Da, additional, Braga, Bruna Letícia Martins, additional, Ferreira, Gabriela Milhomem, additional, Poloniato, Luiz Felipe Castro Vaz, additional, Rios, Mateus Felipe Batista, additional, Jacinto, Rafael Abrantes, additional, Jacinto, Rodrigo Abrantes, additional, Jacinto, Ruy Abrantes, additional, Luiz, Victoria Carolinne Alves, additional, Pires, Marília Karolyne Dias, additional, Calixto, Nicole Melo, additional, Fincatto, Yan, additional, Machry, Vanessa, additional, Souza, Amanda Grangeiro Martins de, additional, Giordani, Jéssica dos Santos, additional, Bonando, Bruno Matida, additional, Colacite, Jean, additional, Silva, João Felipe Tinto, additional, Filha, Francidalma Soares Sousa Cravalho, additional, Fukuda, Michelle Kaori Menezes, additional, Pereira, Adriana Jimenez, additional, Costa, Jardel Alves Da, additional, Barros, Francisco Douglas Dias, additional, Sousa, Lavínia Alves De, additional, Martins, Jorddam Almondes, additional, Moreira, Nádia K G, additional, Rego, Luara Da Silva, additional, Maciel, Karolina De Sousa, additional, Ferreira, Marcia De Sousa, additional, Alves, Letícia Alencar, additional, Gomes, Edna Lara Vasconcelos Da Silva, additional, Silva, Jéssica Ellen Alves Da, additional, Costa, Dayane Dayse De Melo, additional, Martins, Sâmia Karine De Moura, additional, Carvalho, Helinne Medeiros De, additional, Moreira, Iara Pereira Melo, additional, Pereira, Ana Rafaela Silva, additional, Pessoa, Márcia Luiza Dos Santos Beserra, additional, Barros, Nara Vanessa Dos Anjos, additional, Madeiro, Dandara Lucena Medeiros, additional, Pereira, Bárbara Camargo Da Rocha, additional, Fonseca, Caroline Antonia Gontijo Da, additional, Mourão, Felipe Nunes, additional, Dias, Jéssica Azevedo, additional, Miranda, Letícia Helena Braga, additional, Ferreira, Letícia Maria Possa Vicente Sacramento, additional, Gontijo, Luísa Teixeira Francisco E, additional, Costa, Maria Júlia Ribeiro da, additional, Castro, Luana Fernandes da Silva Oliveira, additional, Avelino, Thiago Dante Lustosa da Rocha, additional, Silva, Marielle Neiva Da, additional, Silva, Maira Luísa Neiva Da, additional, Lima, Mariana Schimming De, additional, Neves, Larissa Teixeira, additional, Goulart, Miguel Pereira, additional, Silva, Caroline Oliveira Da, additional, Souza, Matheus Alves De, additional, Gomes, Miriam Pardini, additional, Salvador, Louise De Oliveira, additional, Trentini, Allan Guilherme Alcântara, additional, Vieira, Cláudia Maria da Silva, additional, Ricarte, Kátia Magaly Pires, additional, Costa, Mara Jordana Magalhães, additional, Lages, Solange Ribeiro Nunes, additional, Monte, Aurinice Sampaio Irene, additional, Carneiro, José Alberto Lima, additional, Costa, Iaciara Silva, additional, Silva, Vanessa Soares Rocha da, additional, Ramos, Gustavo Ferreira, additional, Sousa, Jose Nilton Mendes de, additional, Corrêa, Alexsandra Carvalho de Araújo, additional, Nascimento, Isabel Rodrigues do, additional, Silva, Nayana Duarte da, additional, Santos, Edilson Lima dos, additional, Pellizzaro, André Olivo, additional, Bogoni, Bárbara, additional, Belini, Gabriela Fagan, additional, Zanella, Alana, additional, Zampieri, Giulia Parmeggiani, additional, Xavier, Laura Fernandes, additional, Nagata, Maiana Larissa De Castro, additional, Zanatta, Thamela Gazola, additional, Dacroce, Vitória Tischer, additional, Hristonof, Maria Lúcia Steiernagel, additional, Zanatta, Stefanie Flach, additional, Bertinatto, Ricardo Jean, additional, Xavier, Luiza Fernandes, additional, Ferrari, Gabriela Kreutz, additional, Scheibe, Victoria Machado, additional, Consoni, Paulo Roberto Cardoso, additional, Sousa, Julia Maria de Jesus, additional, Santos, Kelly Saraiva dos, additional, Louzeiro, Felipe Alves, additional, Dourado, Giovanna de Oliveira Libório, additional, Ribeiro, Emanuella Pereira, additional, Nunes, Yasmin de Souza, additional, Oliveira, Franscica Vitória de Souza, additional, Sousa, Eva Hadassa Cardoso de, additional, Paixão, Vitória Maria Sousa, additional, Oliveira, Fabíola da Costa, additional, Aguiar, Thalia Antônia Souza Nogueira Guerra, additional, Miranda, Eduarda da Silva, additional, Gomes, Bárbara Luiza Silva, additional, Fendler, Fernanda Santos, additional, Nonato, Gabrielle Celestrini, additional, Cotta, Marcelo Araújo Lacerda, additional, Pinto, Maria Eduarda Papini de Magalhães, additional, Almeida, Nicolle Mendes de, additional, Couto, Bráulio Roberto Gonçalves Marinho, additional, Ferreira, Barbara Quinteiro, additional, Gomes, Rodrigo Da Silva, additional, FERREIRA, MAÍRA LUCÍLIA MONTEIRO, additional, Freitas, Kaio Gomes de, additional, Castralli, Heloísa Augusta, additional, Pires, Catarina Amorim Baccarini, additional, Moraes, Tatiane Dunder de, additional, Calumby, Laís Leão, additional, Roriz, Mariana Romão, additional, Diniz, Clara da Glória, additional, Lima, Sarah Kelly Bessa de, additional, CORRÊA, ANA PAULA EMERICK, additional, Pereira, Jordanio Dos Reis, additional, Araújo, Poliana De Queroz De, additional, Santos, Joel Silva Dos, additional, Veira, Stenio Da Silva, additional, Matias, Julia de Oliveira, additional, Nascimento, Brunna Stella Vieira do, additional, Pinho, Jaqueline Fagundes Carvalho Brito do, additional, Pereira, Jordania Kethlen Campos, additional, Morais, José Sérgio Franco Rocha de, additional, Santos, Tiago Ramos dos, additional, Haddad, Yasmin de Alcântara e Silva, additional, Tigre, Wecsley Ferreira, additional, Saldanha, Janaína Cláudia da Silva, additional, Peixoto, Stefany Monteiro, additional, PEREIRA, MIRIAN GABRIELA MARTINS, additional, Nascimento, Luana, additional, TEIXEIRA, THULIO CESAR, additional, CARNEIRO, GUSTAVO NETTO DO CARMO, additional, Carneiro, João Gabriel Rodrigues, additional, FARIA, MATHEUS CAMELO FERREIRA, additional, Azevedo, Danyelly Rodrigues Machado, additional, Sinimbu, Amália de Jesus Moura, additional, Alves, Ana Angélica, additional, Nascimento, Cidianna Emanuelly Melo do, additional, Dantas, Mariana Peixoto, additional, Silva, Maria Fernanda Oliveira da, additional, Rodrigues, João Victor Campelo Lima, additional, Batista, Matheus Alexandre Sobral, additional, Anchieta, Ana Luísa Teófilo, additional, Santos, Rosana Serejo dos, additional, Queiroz, Solange Cristina Ferreira De, additional, Dias, Alice Pereira, additional, Pereira, Ana Karina Viana, additional, Lira, Letície Batista, additional, Santos, Valdeane Silva, additional, Mendes, Makellyne da Costa, additional, Castro, Idaiane Ribeiro Dias, additional, Alves, Wendel Marcos, additional, Rodrigues, Caroline Souza, additional, Martins, Maria Eduarda Araújo, additional, Cipriano, Camila Lima Sousa, additional, Torres, Luana Cavalcante Mariano Calixto, additional, Lopes, Glória Maria de Almeida, additional, Meireles, Jéssica Karolyne Feitosa Melo, additional, Machado, Paula Rafaela Gomes, additional, Gomes, Leonardo Bezerra, additional, Andrade, Matheus Lima, additional, Castelo, Jéssica Teixeira, additional, Monteiro, Cacilia Uchoa, additional, Martins, Ana Raquel Araújo, additional, Dias, Francisco Ricardo Barreto, additional, Coelho, Amanda Marques, additional, Cavassola, Davidson de Lima, additional, Costa, Giovanna de Carvalho Meneses, additional, Brito, Lizandra Azevedo, additional, Oliveira, Leonam Costa, additional, Zanella, Pedro Luís Ávila, additional, Grilo, Rafael Santana, additional, Faria, Rodrigo Ferreira, additional, Toledo, Antônio Homero Rocha, additional, Barra, Carolina Mark Wu Vitorino, additional, Boechat, Esther Pifano, additional, Nogueira, Lyandra Yuri Katsuyama, additional, Monteiro, Isabela Costa, additional, Prudente, Ana Luiza Naves, additional, Carneiro, Júlia Fonseca, additional, Crispim, Ana Clara Ferreira, additional, Freire, Pedro Vitor Vieira, additional, Uchôa, João Bruno Machado, additional, Silva, Clécia Maria Da, additional, Silva, Jamyne Victorya Figueredo Da, additional, Barros, Fátima Rosane, additional, Rocha, Rute Emanuela Da, additional, Silva, Tamiris Ramos, additional, Soares, Tiago, additional, Nolêto, Sâmyla Bruno, additional, Duarte, Larissa Da Silva, additional, Magalhães, Kamila Fernanda Soares, additional, Alves, Ana Glécia Pimentel, additional, Carvalho, Helline Medeiros De, additional, Macedo, Mikaella Isis De, additional, Rocha, Lucineide De Brito, additional, Chaves, André F De C P, additional, Almeida, Priscilla Dantas, additional, Nunes, Rômulo Veloso, additional, Araújo, Telma Maria Evangelista de, additional, Fronteira, Inês, additional, Sousa, Mauricelia P de, additional, Castro, Gabrielle Batista Silva, additional, Dias, Josimar Kapps de Souza, additional, Fronza, Murilo Elias, additional, Rossi, Arthur Proença, additional, COSTELLA, GISELI, additional, Leon, Cristiano De, additional, EVARISTO, ALMIRO SAGÁS, additional, Gonçalves, Emília Samara Mariano, additional, Lourenço, Lourena Gouveia, additional, Kapps, Josimar, additional, COSTA, LUIZA GABRIELA, additional, Bastos, Ana Carolina da Silva, additional, Melo, Marcos André Lima, additional, Costella, Giseli, additional, Lamonica, Gabriela Guilhoto Cabral, additional, Mello, Rafaela da Silva Vieira de, additional, Azevedo, Juliana Latini, additional, Valladares, Ana Luíza de Sousa, additional, Santos, Bárbara Aparecida Costa, additional, Cajazeira, Brenda Carolina Rodrigues, additional, Libanio, Gabriela Cristina, additional, Gonçalves, Tatiane da Cunha Marques, additional, Bacha, Felipe Lage, additional, Rodrigues, Fernanda Diniz, additional, Carvalho, Gabriela Dantas, additional, Arruda, Francisco Lázaro, additional, Silva, Paulo Romão Ribeiro Da, additional, Freitas, Guilherme Barroso Langoni De, additional, Santos, Rebeca Muálem De Moraes, additional, OLIVEIRA, Guilherme Rodrigues, additional, Leal, Ana Carolina Cunha, additional, FREITAS-SILVA, Ana Letícia, additional, GUIMARÃES, Vinícius Henrique Almeida, additional, NUNES, Luís Gustavo Fagundes, additional, Aguiar, Vanessa de, additional, Schiavetto, Igor Marques, additional, Fraga, Gustavo Pereira, additional, Calderan, Thiago Rodrigues Araújo, additional, Souza, Hellen Soraya de Brito, additional, Barros, Cassandra Mirtes De Andrade Rêgo, additional, Vieira, Danilo Silva, additional, Barros, Ingrid Cristina Rêgo, additional, Barros, Marcos Aurélio Lima, additional, Pereira, Bianca de Fátima, additional, Rodrigues, Cátia Ribeiro de Sá, additional, Rodrigues, João Pedro Torres Neiva, additional, Terror, Mariana Sequetto, additional, Aguiar, Pedro Henrique Chaves Souza, additional, Torres, Raquel Vieira, additional, Oliveira, Tiago de Jesus, additional, Oliveira, Mariana Constantina de, additional, Brandão, Socorro Adriane de S Meneses, additional, Rodrigues, Érica De Alencar, additional, Magalhães, Edilane Jales Leite, additional, Ramos, Carmen Viana, additional, Ribeiro, Ivonizete Pires, additional, Martins, Maria do Carmo de Carvalho e, additional, Lago, Eliana Campêlo, additional, Feitosa, Lucíola Galvão Gondim Corrêa, additional, Costa, Polyana Felipe Ferreira da, additional, Costa, Willams Araujo Da, additional, Andrade, Ingrid Sousa, additional, Miranda, Paulo Henrique Soares, additional, Santos, Paulo Ion Feitosa, additional, Silva, Stefane Gonçalves, additional, Santana, Jackline Pinheiro Santos, additional, Grangeiro, Iara Miranda, additional, Coutinho, Rosana de Jesus Santos Martins, additional, and Albuquerque, Ingrid de Campos, additional

Published
2021
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10. Herpes-Zoster Oftálmico: relato de um caso inicialmente diagnosticado como Loxoscelismo Cutâneo

Author

Vaccari, Nicole, primary, De Freitas Netto, Felício, additional, Jecohti, Vivian Missima, additional, Barth, Fabio Vinicius, additional, Polay, João Pedro Gambetta, additional, Jupen, Gabriela Alves, additional, Rickli, Guilherme Ângelo Faria, additional, Basso, Braian Fernandes, additional, De Oliveira, Eduarda Jula, additional, and Lázaro, Matheus Henrique Santos, additional

Published
2023
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11. Chemical–protein relation extraction with ensembles of carefully tuned pretrained language models

Author

Weber, Leon, Sänger, Mario, Garda, Samuele, Barth, Fabio, Alt, Christoph, Leser, Ulf, Weber, Leon, Sänger, Mario, Garda, Samuele, Barth, Fabio, Alt, Christoph, and Leser, Ulf

Abstract

The identification of chemical–protein interactions described in the literature is an important task with applications in drug design, precision medicine and biotechnology. Manual extraction of such relationships from the biomedical literature is costly and often prohibitively time-consuming. The BioCreative VII DrugProt shared task provides a benchmark for methods for the automated extraction of chemical–protein relations from scientific text. Here we describe our contribution to the shared task and report on the achieved results. We define the task as a relation classification problem, which we approach with pretrained transformer language models. Upon this basic architecture, we experiment with utilizing textual and embedded side information from knowledge bases as well as additional training data to improve extraction performance. We perform a comprehensive evaluation of the proposed model and the individual extensions including an extensive hyperparameter search leading to 2647 different runs. We find that ensembling and choosing the right pretrained language model are crucial for optimal performance, whereas adding additional data and embedded side information did not improve results. Our best model is based on an ensemble of 10 pretrained transformers and additional textual descriptions of chemicals taken from the Comparative Toxicogenomics Database. The model reaches an F1 score of 79.73% on the hidden DrugProt test set and achieves the first rank out of 107 submitted runs in the official evaluation. Database URL: https://github.com/leonweber/drugprot, Peer Reviewed

Published
2022

23. Epidemiological analysis of congenital glaucoma: a national scenario.

Author

Polay JPG, Barth FV, Bayer RN, and Ost C

Subjects
Humans, Brazil epidemiology, Female, Male, Infant, Newborn, Incidence, Risk Factors, Pregnancy, Gestational Age, Sex Distribution, Glaucoma epidemiology, Glaucoma congenital
Abstract

Introduction: Congenital glaucoma is a disease that involves increased intraocular pressure and can result in irreversible visual deterioration. The study of epidemiology allows the delineation of the characteristics associated with patients and specific risk factors., Objective: The objective of this study was to examine epidemiological trends, place of residence, duration of gestation, sex, and race of the newborn diagnosed with congenital glaucoma in Brazil., Methods: Data from SINASC (National Live Birth System) were used to analyze the period from 2017 to 2021 in Brazil. Linear regression and analysis of variance tests were employed to assess significance. The statistical significance was determined by p<0.05., Results: A total of 47 cases of congenital glaucoma were identified in Brazil during the study period, with the highest incidence between the years of 2018 and 2021. The analysis of the distribution indicated that the states with the highest incidence were São Paulo, followed by Rio Grande do Sul and Pernambuco. Approximately 60% of cases occurred in male individuals, compared with 19 female cases. The ethnic analysis showed the highest incidence among whites and mixed. Regarding the length of pregnancy, statistical differences were observed between newborns of different periods of gestation. Infants born from pregnancies lasting between 28 and 31 weeks and 32 and 36 weeks were significant when analyzed with the group between 37 and 41 weeks., Conclusion: Studies on the mechanisms of congenital glaucoma seek to improve knowledge about the disease. Epidemiological evaluation is essential for identifying demographic and clinical patterns of the disease.

Published
2024
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24. Epidemiological analysis of congenital syphilis in the State of Paraná, Brazil.

Author

Barth FV, Polay JPG, and Ost C

Subjects
Humans, Brazil epidemiology, Female, Incidence, Pregnancy, Adult, Young Adult, Infant, Newborn, Adolescent, Male, Age Distribution, Infant, Syphilis, Congenital epidemiology, Prenatal Care statistics & numerical data, Pregnancy Complications, Infectious epidemiology
Abstract

Introduction: Congenital syphilis is a complex public health issue caused by the transmission of Treponema pallidum. Brazil has high incidence rates, with a distinct transmission pattern surpassing other notifiable diseases., Objective: The objective of this study was to examine epidemiological trends, incidence rate, mortality, geographical distribution, prenatal care, and diagnostic determination timing of congenital syphilis in Paraná State., Methods: Data from Department of Informatics of the Single Health System were used to analyze the period from 2015 to 2021 in Paraná. Linear regression and t-tests were employed to assess significance. Statistical significance was determined by p<0.05., Results: A total of 5,096 notifications of congenital syphilis were recorded in Paraná over the examined period. The metropolitan region is a notable clustering of cases, following Londrina, Maringá, and Foz do Iguaçu. The age group with the highest cases is found between 20 and 24 years (34.93%). Regarding maternal education, a higher occurrence was noticed in incomplete lower secondary education mothers (22.12%). Regarding ethnic background, 3,792 women were identified as white, which was the majority of this analysis (74.41%). Diagnosed maternal syphilis throughout the prenatal phase during 2015-2018 exhibited a noteworthy increase (p<0.05). Most women received prenatal care (p<0.05), even though a significant number received the diagnosis at the delivery or after it. The average infant mortality rate associated with congenital syphilis in Paraná was 0.03., Conclusion: Paraná State serves as a representative sample of this epidemiological situation, providing significant insights into the intricacies of congenital syphilis incidence. Further comparative investigations including diverse regions within Brazil are necessary.

Published
2024
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