1. Rate zonal sedimentation of proteins in one hour or less
- Author
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Rebois Rv and Basi Ns
- Subjects
Sucrose ,Chromatography ,Time Factors ,Chemistry ,Protein Conformation ,Biophysics ,Analytical chemistry ,Proteins ,Stimulatory G-protein ,Cell Biology ,Sedimentation ,Biochemistry ,Centrifugation, Zonal ,Evaluation Studies as Topic ,GTP-Binding Proteins ,Sedimentation technique ,Animals ,Centrifugation ,Cattle ,Sample dilution ,Molecular Biology - Abstract
Rate zonal sedimentation gives information about the shape and size of proteins, and is useful for investigating protein-protein interactions. However, rate zonal sedimentation experiments typically last approximately 1 day. In contrast, this report describes a rate zonal sedimentation method requiring 1 h or less. This was accomplished by centrifuging small density gradients (200 microliters) prepared with sucrose or OptiPrep in a fixed-angle rotor at high relative centrifugal force. By using small gradient volumes, the sample dilution that occurs with larger gradients and with many chromatographic techniques was also avoided. For a variety of proteins, plots of S20,w versus distance sedimented during centrifugation in a TLA 120.2 rotor were linear. As a practical application, sedimentation of the heterotrimeric stimulatory G protein and its dissociated alpha-subunit were determined. The results were similar to those obtained with 17- to 22-h centrifugations in an SW 50.1 rotor and agreed with previously published values. Long periods of centrifugation might preclude the study of some unstable proteins or the investigation of protein-protein interactions whose affinities are to low to survive the lengthy centrifugations required to carry out traditional rate zonal sedimentation experiments. A rate zonal sedimentation technique that rivals many chromatographic methods in celerity will help to circumvent these problems.
- Published
- 1997