Search

Sticklebacks or Gaterosteus aculeatus from a brackish water and a freshwater community were compared immediately after extraction from their habitat and after being maintained in the laboratory. Findings showed that glutamate dehydrogenase activities in the liver and both lactate dehydrogenase and aspartate aminotransferase activities in the axial muscle were higher in the brackish water sticklebacks than in the freshwater species. Liver glutamate dehydrogenase activities were more predominant in males than in females. However, lactate dehydrogenase activities were higher in females.

Genetic differences between North Sea and Baltic Sea Hediste diversicolor populations were examined by allozyme electrophoresis on starch gel. Thirteen loci were examined in eight populations. Genetic differences were very small. Differentiation between H. diversicolor populations was quite large. The reduced gene flow may be due to the limited dispersal capacity of the species. Apparently, there are two different genetic types which are parapatric or sympatric regardless of whether they come from the North Sea or the Baltic Sea.

Population genetic studies utilizing electrophoretic analysis of allozymes have indicated that the North Sea and Baltic Sea have been colonized by two different genetic types of the genus Marenzelleria. Comparative analysis suggests that the invaders are from the North American Atlantic coast. Genetic analysis further revealed that the colonizing species have lost little of their genetic variation. This means that introduction of the invading species happened only a few years ago.

Studies of Marenzelleria species were often hampered by identification uncertainties when using morphological characters only. A newly developed PCR/RFLP protocol allows a more efficient discrimination of the three species Marenzelleria viridis, Marenzelleria neglecta and Marenzelleria arctia currently known for the Baltic Sea. The protocol is based on PCR amplification of two mitochondrial DNA gene segments (16S, COI) followed by digestion with restriction enzymes. As it is faster and cheaper than PCR/sequencing protocols used so far, the protocol is recommended for large-scale analyses. The markers allow an undoubted determination of species irrespective of life stage or condition of the worms in the samples. The protocol was validated on about 950 specimens sampled at more than 30 sites of the Baltic and the North Sea, and on specimens from populations of the North American east coast. Besides this test we used mitochondrial DNA sequences (16S, COI, Cytb) and starch gel electrophoresis to further investigate the distribution of the three Marenzelleria species in the Baltic Sea. The results show that M. viridis (formerly genetic type I or M. cf. wireni) occurred in the Öresund area, in the south western as well as in the eastern Baltic Sea, where it is found sympatric with M. neglecta. Allozyme electrophoresis indicated an introduction by range expansion from the North Sea. The second species, M. arctia, was only found in the northern Baltic Sea, where it sometimes occurred sympatric with M. neglecta or M. viridis. For Baltic M. arctia, the most probable way of introduction is by ship ballast water from the European Arctic. There is an urgent need for a new genetic analysis of all Marenzelleria populations of the Baltic Sea to unravel the current distribution of the three species. [ABSTRACT FROM AUTHOR]

Differences in protein patterns of the soluble protein fraction among the sibling speciesMarenzelleria viridis(formerly type I) andM.neglecta(formerly type II) were investigated under common environmental conditions using two-dimensional gel electrophoresis (2D-PAGE). Protein expression was determined using general protein staining with Coomassie-blue and compared with radioactive labeling of proteins. In the well-resolved region of stained gels an average of 319 protein spots forM.viridisand 241 spots forM.neglectacould be detected. High sensitivity of radiolabeling allowed separation of an average of 517 and 496 spots forM.viridisand forM.neglecta, respectively. Differences in protein expression between both species could be attributed mainly to qualitative differences in protein patterns. Triplet pattern was used to calculate the genetic similarity of the two species. Thus, 373 protein spots were scored for this analysis; whereas 304 spots were invariant, 36 spots were specific forM.viridis, while 33 spots were specific forM.neglecta. The genetic similarity (F) of the twoMarenzelleriasibling species was 0.815. Apart from presence and absence, differences between both species resulted either from slight changes in the isoelectric point or from molecular weight, but rarely from both. Genetic variability was found only among specimens ofM.viridis. The experimental conditions to perform two-dimensional electrophoresis for these polychaete species were established for subsequent investigations on a proteomic level. Using 2D-PAGE we expect further insight into the evolutionary adaptation inMarenzelleriaspp. [ABSTRACT FROM AUTHOR]

The spread of the subspecies M. caspica danubialis Băcescu, 1944, which has been found in the Danube since 1944, into the upper section of the Danube as far as Austria was the reason for describing the characters of this species and comparing it with the nominotypical subspecies M. caspica caspica Annenkova, 1929, which lives in the Caspian Sea. Both subspecies are similar in the most important diagnostic characters, such as the number of branches of the radioles and the presence and number of pseudospatulate chaetae on thoracic chaetigers. However, they differ in other, less conspicuous characters, such as the number of thoracic uncini and the length of chaetigers. But these characters vary depending on the size of the specimens. Both subspecies inhabit completely different habitats. Based on the ecological species concept, the spatially and ecologically separated populations are regarded as distinct species, M. caspica, and M. danubialis n. comb. The occurrence of transitional uncini in both species and the presence of a brood chamber in the females of M. caspica are described for the first time. The structure of the radiolar crown is also described for both species. A molecular barcode for M. danubialis n. comb., a 654 base pair fragment of cytochrome c oxidase I is presented, allowing a fast and simple identification of this species by using a robust PCR/sequencing approach.

This paper aims mainly to provide clarity on the morphological characters of the type species of Ampharete, Ampharete acutifrons (Grube, 1860). Its common occurrence and wide distribution are most likely a result of misidentification of different species. Possible reasons for that are the brief original description of this species that is available solely in Latin and a series of questionable synonymizations, resulting in a confusing history of A. acutifrons. In addition to a detailed redescription of the holotype of A. acutifrons, we describe an Ampharete species from the Baltic Sea that has also been incorrectly identified as A. acutifrons for many decades. The individuals of this species agree in all diagnostic characters with those of the Northwest Atlantic species Ampharete cirrata Webster Benedict, 1887. Since no differences were found, but it is clearly distinct from A. acutifrons, A. cirrata is recognised as a valid species and consequently deleted from the synonym list of A. acutifrons. We additionally examined type material of A. grubei Malmgren, 1865 and those of A. grubei baltica Eliason, 1955, now accepted as A. baltica. According to this, both species are valid, and A. grubei must therefore also be deleted from the list of synonyms of A. acutifrons. Information on five molecular markers (Histone H3, COI, 16S, 18S, 28S) is provided for A. cirrata from the Baltic Sea. DNA sequences (H3, 16S, 28S) were identical to sequences of a specimen found in Iceland that was incorrectly determined as A. acutifrons, supporting the assumption of an amphiatlantic distribution of A. cirrata. By comparing obtained sequences to available sequences in GenBank and BOLD, we found evidence that at least four species were previously misidentified as A. acutifrons. The historical course of the taxonomy of A. acutifrons demonstrates the importance of carefully studying type material and type locality material, respectively. We believe that most previous records and synonyms of A. acutifrons have been identified incorrectly and should be re-evaluated. Additionally, an updated key to all species of Ampharete from the North Atlantic is provided.

The veined squid, Loligo forbesii Steenstrup, 1856, occurs at the European Shelf areas including the Azores and represents a valuable resource for the European commercial fishery in the North East Atlantic. However, very little is known about its population structure and phylogeography. This lack of knowledge also impedes the development of sustainable fishery management for this species. The present study combined the use of two types of markers that retrieve patterns of gene flow in different time spans; the analysis of 16 nuclear microsatellites and sequencing of the mitochondrial cytochrome oxidase subunit I (COI). Whereas the high mutation rate of microsatellites allows the description of recent patterns of connectivity in species, the lower mutation rate of COI provides phylogeographic patterns on a longer timescale. A total of 347 individuals of L. forbesii were investigated from nearly the entire distribution range of the species, including the North East Atlantic Shelf, the Azores and the Mediterranean. Individuals from the Western and Eastern Mediterranean Sea have never been included in a genetic study before. We were able to analyse COI sequences from all 12 sampling areas and define three clades of L. forbesii. Due to our large sampling area, we are presenting 13 COI-haplotypes that were previously unknown. The microsatellite analysis does not include the Azores but three main clades could be identified at the remaining 11 sampling sites. Low F ST values indicate gene flow over large geographical distances. However, the genetically significant differences and an additional slight grouping in the microsatellite structure reveal that geographical barriers seem to influence the population structure and reduce gene flow. Furthermore, both markers provide strong evidence that the observed phylogeographic pattern reflects the geographical history of the Azores and the Mediterranean Sea., (© 2022. The Author(s).)

In 2009, a hitherto unknown Laonome species was found in the Canal Ghent-Terneuzen in the Netherlands and subsequently in other Dutch rivers, canals and estuaries. A few years later, more unknown Laonome specimens were found in the eastern part of the Baltic Sea and in the Don River estuary, Sea of Azov. Initially, it was assumed that these specimens could represent Laonome calida Capa, 2007, originally described from Australia. In the present study we examine all these unknown European Laonome specimens and compare these specimens with the type material of L. calida from Australia. This lead to two main results: First, all specimens from Europe have the same diagnostic characters and therefore belong to one species. This finding was also supported by the results of a correspondence analysis, and genetic analyses using four different DNA sequences (COI, 16S, 28S). Second, it turned out that the type material of L. calida contains two morphologically distinct groups of specimens. The holotype and 7 paratypes are similar to each other but differ significantly from the other also similar 16 paratypes, and from all European specimens. On the basis of these observations, the Laonome specimens from European waters are described here as L. xeprovala sp. nov. We also provide the characters of the branchial crown of three Laonome species for a prospective revision of this genus.

Microsporidia are single-celled, intracellular eukaryotes that parasitise a wide range of animals. The Nosema/Vairimorpha group includes some putative asexual species, and asexuality is proposed to have originated multiple times from sexual ancestors. Here, we studied the variation in the ribosomal DNA (rDNA) of 14 isolates of the presumed apomictic and vertically transmitted Nosema granulosis to evaluate its sexual status. The analysed DNA fragment contained a part of the small-subunit ribosomal gene (SSU) and the entire intergenic spacer (IGS). The mitochondrial cox1 gene of the host Gammarus duebeni (Crustacea) was analysed to temporally calibrate the system and to test the expectation of cophylogeny of host and parasite genealogies. Genetic variability of the SSU gene was very low within and between the isolates. In contrast, intraisolate (within a single host) variability of the IGS felt in two categories, because 12 isolates possess a very high IGS genetic diversity and two isolates were almost invariable in the IGS. This difference suggests variable models of rDNA evolution involving birth-and-death and unexpectedly concerted evolution. An alternative explanation could be a likewise unattended mixed infection of host individuals by more than one parasite strain. Despite considerable genetic divergence between associated host mitochondrial haplotypes, some N. granulosis 'IGS populations' seem not to belong to different gene pools; the relevant tests failed to show significant differences between populations. A set of recombinant IGS sequences made our data incompatible with the model of a solely maternally inherited, asexual species. In line with recent reports, our study supports the hypothesis that some assumed apomictic Microsporidia did not entirely abstain from the evolutionary advantages of sex. In addition, the presented data indicate that horizontal transmission may occur occasionally. This transmission mode could be a survival strategy of N. granulosis whose host often populates ephemeral habitats., (Copyright © 2013 Elsevier B.V. All rights reserved.)

We determined the complete mitogenome sequence of Gammarus duebeni (Peracarida, Amphipoda). The mitogenome is circular and has a length of 15,651bp. The content corresponds to typical mitogenomes of metazoans. The gene order and transcriptional polarity of the protein-coding genes is identical to the pancrustacean ground pattern. Six tRNA genes are rearranged, making the gene order unique. Thus it will bring forward the understanding of mitogenome evolution within the Peracarida, for which much more derived gene orders are known. We postulate that the gene string trnA-trnS1 (AGN)-trnN-trnE-trnR constitutes an apomorphic character for the Amphipoda. In contrast to the relatively large genome size, we found two extremely truncated rRNA genes. The rrnL gene is the shortest (986bp) reported up until now for crustaceans. A six-time imperfect tandem repeat was observed within the control region. The inferred deterministic pattern of variation between the repeat units makes it likely, that functional constraints play an important role in the evolutionary dynamics and extant appearance of the repeat array., (Copyright © 2012 Elsevier Inc. All rights reserved.)

The mud worm genus Marenzelleria is highly invasive and is therefore studied intensively. In recently invaded habitats, sympatric populations of the sibling species Marenzelleria viridis and Marenzelleria neglecta are found. In these secondary contact zones, hybridization occurs frequently, revealing incomplete reproductive isolation between these recently diverged species. Two-dimensional polyacrylamide gel electrophoresis (2-DE) and mass spectrometric methods were applied for a comparative analysis of these species and their F(1)-hybrids. Nineteen proteins were identified by cross-species identification strategies. A low degree of interindividual variability within either species allowed characterizing qualitative species-specific differences in 2-DE spot patterns as well as in peptide maps. Species-specific peptides were found in tryptic digests of various proteins, such as glyceraldehyde-3-phosphate dehydrogenase, troponin C, gelsolin-like protein, and peroxiredoxin-1. F(1)-hybrids of M. viridis and M. neglecta showed additivity of protein spot patterns, and the presence of both parental traits was confirmed by mass spectrometric data. This study is one of few dealing with global protein expression in polychaetes and is the first proteomic description of natural F(1)-hybrids in polychaetes. It furthermore indicates the feasibility of proteomic methods for analyses of speciation in Marenzelleria siblings as well as of hybridization events in secondary contact zones in general.

The Himalayan mountain arc is one of the hotspots of biodiversity on earth, and species diversity is expected to be especially high among insects in this region. Little is known about the origin of the Himalayan insect fauna. With respect to the fauna of high altitude cloud forests, it has generally been accepted that Himalayan lineages are derived from ancestors that immigrated from Western Asia and from adjacent mountainous regions of East and Southeast Asia (immigration hypothesis). In this study, we sought to test a Tibetan Origin as an alternative hypothesis for groups with a poor dispersal ability through a phylogeographic analysis of the Ethira clade of the genus Pterostichus. We sequenced COI mtDNA and the 18S and 28S rDNA genes in 168 Pterostichini specimens, including 46 species and subspecies of the Ethira clade. In our analysis, we were able to show that the Ethira clade is monophyletic and, thus, represents a Himalayan endemic clade, supporting endemism of two of the basal lineages to the Central Himalaya and documenting large distributional gaps within the phylogeographic structure of the Ethira clade. Furthermore, the molecular data strongly indicate very limited dispersal abilities of species and subspecies of these primary wingless ground beetles. These results are consistent with the hypothesis of a Tibetan Origin, which explains the evolution, diversity and distribution of the Himalayan ground beetle Ethira clade much more parsimoniously than the original immigration hypothesis.

The variability of the nuclear 18S rDNA was examined for 10 species of freshwater eels: Anguilla anguilla, A. australis, A. dieffenbachii, A. japonica, A. marmorata, A. mossambica, A. nebulosa labiata, A. obscura, A. reinhardtii and A. rostrata. We observed that a single nucleotide polymorphism (SNP) separated A. anguilla and A. japonica from the remaining taxa. While this SNP marker may be used to identify hypothetical hybrids of A. japonica and sympatric eel species, we focused on Atlantic eels to evaluate the potential for this diagnostic chromosomal marker to discriminate between individuals of A. anguilla, A. rostrata and their hybrids., (© 2009 Blackwell Publishing Ltd.)

Taxonomy and phylogeny within the branchiopod taxon Spinicaudata are still controversial. We analyzed sequences of three gene fragments (28S rRNA, 16S rRNA and COI) from up to 41 species of the Cyzicidae, Limnadiidae and Leptestheriidae to infer their phylogenetic relationships, focusing in particular on species from Australia and their phylogenetic position within Spinicaudata. Four major monophyletic lineages could be distinguished: Limnadiidae, Leptestheriidae, Eocyzicus and all Cyzicidae except Eocyzicus. A clear genetic distinction between Australian and non-Australian Cyzicidae is well supported (i.e. Caenestheria and Caenestheriella species from Australia and Caenestheriella and Cyzicus species from Europe, Asia and North America). In the genera Eocyzicus and Eulimnadia the Australian species were closely related to those from other continents. The species of the Australian endemic genus Limnadopsis and Australian Limnadia species form a monophylum. This suggests that the origin of Limnadopsis lies in Australia and that Limnadia is not monophyletic.

The cyanobacterial diversity in the pelagic of a shallow estuary at the Southern Baltic Sea has been investigated by a combination of classical morphological data and a polymerase chain reaction (PCR)-based molecular approach. The aim of the study was to investigate possible changes in the composition of the cyanobacterial community along the salinity and nutrient gradients. For this purpose partial gene sequences of cyanobacterial 16S rDNA and of two functional genes (ggpS- salinity tolerance marker, isiA- iron starvation marker) were amplified and compared with total community DNA. Random distribution of ggpS genotypes along the salinity gradient suggests that synthesis of the osmolyte glucosylglycerol is not restricted to higher salinity sampling sites. Most of the isiA sequences formed a new homogenous cluster in a phylogenetic tree, which indicates that the indigenous cyanobacterial community comprises a group of unknown species. Minimum iron concentrations, which can activate isiA transcription in model cyanobacteria, occurred at a few sampling sites with high phytoplankton biomass and moderate salinity. Nevertheless, isiA expression could be detected at all sampling sites, which indicated restricted iron supply to cyanobacterial phytoplankton in summer.

Fourteen primary human malignant mesothelioma (HMM) samples obtained from 14 patients were screened for point mutations and microdeletions/microinsertions in exons 1-16 of the chromosome 22q-located tumour suppressor gene neurofibromin 2 (nf2) by single strand conformation polymorphism (SSCP) analysis. In one tumour (7%) a 10 basepair microdeletion of exon 10 was detected by SSCP and subsequently characterised in detail by sequencing. Deletion of the second nf2 allele in laser-microdissected regions of the 10 bp mutation-harbouring tumour was demonstrated by denaturing gradient gel electrophoresis (DGGE) analysis. Simultaneous comparative genomic hybridisation (CGH) analysis also showed losses at chromosome 22q. Our data indicate that functional loss of the NF2 protein may be involved in the formation of a subset of HMMs.

Nineteen specimens from primary human malignant mesotheliomas obtained from 19 patients were screened for activating point mutations in the oncogenes N-ras and CDK4 by combined RFLP-PCR/SSCP analysis. In addition, all tumours were screened for deletions and point mutations in the tumour suppressor genes p53, p16INK4a (CDKN2A) and p14ARF (exon-1beta) by combined multiplex-PCR/SSCP analysis. No mutations were found in N-ras, p53 and CDK4. Three tumours displayed homozygous deletion (co-deletion of exons 1, 2 and 3) of p16INK4a. One of them displayed additional homozygous deletion of p14ARF (exon-1beta). Two silent point mutations and 2 polymorphisms were found in p16INK4a in 3 tumours. Our preliminary data indicate that disarrangement of the Rb1 pathway may be involved in mesothelioma formation.

Phylogenetic analysis of a segment of the mitochondrial 16S rDNA of eight Anguilla species from the Indo-Pacific region and from the North Atlantic revealed that the genus Anguilla appears to be surprisingly young, based upon the small observed maximum genetic distance of 4.8% and the high degree of morphological similarity among the species. The placement of A. marmorata as the most ancestral lineage suggests that the genus is likely to have originated in the Indo-Malayian region, from which it quickly spread. Two Pacific species, A. obscura and A. japonica, branched next. A. japonica was placed as sister group to all remaining species, which formed three clades: the first comprising A. australis, the second A. reinhardti and A. mossambica, and the third A. anguilla and A. rostrata. All analyzed specimens of A. rostrata originating from southern New Jersey to Nova Scotia had identical mitotypes, while five mitochondrial genotypes were found in Europe differing by zero to two substitutions. The two Atlantic eel species are very closely related; all surveyed specimens of A. anguilla differ by three to five substitutions from their American allies, corroborating the existence of two distinct biological species. This was also confirmed by restriction analysis of a 350-bp segment of the cytochrome b, in which American specimens were distinct in sharing a single diagnostic restriction site of HinfI. Our results suggest little to no gene flow between the two nominal Atlantic eel species., (Copyright 2000 Academic Press.)

Protein synthesis-stimulating activity was assayed in the cytosolic fraction of white muscle from teleost fish (rainbow trout, carp) and of rat liver. In vitro protein synthesis-stimulating activity in the cytosolic fraction is reduced by food deprivation. The addition of elongation factors EF1, EF2, or EF1 + EF2 compensates for the starvation-induced loss of protein synthesis-stimulating activity in trout muscle cytosol. The action of EF2 is stronger than that of EF1 in this respect. However, EF1 enhances in vitro protein synthesis-stimulating activity in rat liver cytosol more than EF2. The EF2 concentration in the cytosolic fraction of white muscle from starved trout is significantly lower than in fed specimens.