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We assess the UK Biobank (UKB) Polygenic Risk Score (PRS) Release, a set of PRSs for 28 diseases and 25 quantitative traits that has been made available on the individuals in UKB, using a unified pipeline for PRS evaluation. We also release a benchmarking software tool to enable like-for-like performance evaluation for different PRSs for the same disease or trait. Extensive benchmarking shows the PRSs in the UKB Release to outperform a broad set of 76 published PRSs. For many of the diseases and traits we also validate the PRS algorithms in a separate cohort (100,000 Genomes Project). The availability of PRSs for 53 traits on the same set of individuals also allows a systematic assessment of their properties, and the increased power of these PRSs increases the evidence for their potential clinical benefit., Competing Interests: Peter Donnelly and Gil McVean are partners in Peptide Groove LLP. Deborah Thompson, Daniel Wells, Saskia Selzam, Iliana Peneva, Rachel Moore, Kevin Sharp, William Tarran, Edward Beard,Fernando Riveros-Mckay, Carla Giner-Delgado, Duncan Palmer, Priyanka Seth, James Harrison, Gil McVean, Vincent Plagnol, Peter Donnelly and Michael Weale are current or former employees of Genomics plc, and are or have been in possession of stock or stock options for Genomics plc. Peter Donnelly and Gil McVean are Founders and Directors of Genomics plc, and Peter Donnelly is the CEO of Genomics plc. This does not alter our adherence to PLOS ONE policies on sharing data and materials., (Copyright: © 2024 Thompson et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

The number of scientific publications reporting cutting-edge third-generation photovoltaic devices is increasing rapidly, owing to the pressing need to develop renewable-energy technologies that address the climate-change crisis. Consequently, the field could benefit from a central repository where photovoltaic-performance metrics, such as the power-conversion efficiency (η) are recorded. We present two automatically generated databases that contain photovoltaic properties and device material data for dye-sensitized solar cells (DSCs) and perovskite solar cells (PSCs), totalling 660,881 data entries representing 57,678 photovoltaic devices. The databases were generated by applying the text-mining toolkit ChemDataExtractor on a corpus of 25,720 articles. A multi-faceted evaluation, incorporating manual and automatic methods, was applied to ensure that the data contained therein were of the highest quality, with precision metrics ranging from 73.1% to 95.8%. The DSC database contains 475,045 entries representing 41,680 devices, and the PSC database contains 185,836 entries representing 15,818 devices. The databases are available in MongoDB and JSON formats, which can be queried in Python, R, Java and MATLAB for data-driven photovoltaic materials discovery., (© 2022. The Author(s).)

The rise of data science is leading to new paradigms in data-driven materials discovery. This carries an essential notion that large data sources containing chemical structure and property information can be mined in a fashion that detects and exploits structure-property relationships, such that chemicals can be predicted to suit a given material application. The success of material predictions is predicated on these large data sources of chemical structure and property information being suited to a target application. Microscopy is commonly used to characterize chemical structure, especially in fields such as nanotechnology where material properties are highly dependent on the size and shape of nanoparticles. Large data sources of nanoparticle information stemming from microscopy images would thus be highly beneficial. Millions of microscopy images exist, but they lie fragmented across the literature, typically presented individually within a paper article and usually in a qualitative fashion therein, even though they harbor a wealth of numeric information. We present the ImageDataExtractor toolkit that autoidentifies and autoextracts microscopy images from scientific documents, whereupon it autonomously analyzes each image to produce quantitative particle size and shape information about its subject material. Each image is quantified by decoding its scale bar information using optical character recognition, with help from super-resolution convolutional neural networks where required. Individual particles are detected and profiled using various thresholding, segmentation, polygon fitting, and edge correction routines. The high-throughput operational capability of ImageDataExtractor means that it can be used to generate large-data sources of particle information for data-driven materials discovery. Evaluation metrics, precision and recall, are greater than 80% for the majority of the image processing steps, and precision is above 80% for all critical steps. The ImageDataExtractor tool is released under the MIT license and is available to download from http://www.imagedataextractor.org.

The number of journal articles in the scientific domain has grown to the point where it has become impossible for researchers to capitalize on all findings in their relevant discipline. Information is stored in these articles in a number of ways, including figures that describe important results. In organic chemistry, these figures often present chemical schematic diagrams that graphically define the structures of carbon-based compounds. These diagrams are intuitive for an expert to comprehend, but they are not designed for machines. This work presents ChemSchematicResolver, a software tool that can be used to identify chemical schematic diagrams within the figure of a document, resolve any R-group substituents within them, and convert the resulting diagrams to a machine-readable format in a high-throughput, autonomous fashion. The tool includes a new algorithm that is used to identify relevant diagrams and a mechanism that combines these data with contextual information from the rest of the document for the creation of highly relational databases. It includes support for a variety of general R-group structures, the first time this is available in any open-source chemical schematic diagram extraction tool. It is presented alongside a self-generated evaluation set, on which the most important assessment metric, precision, achieved 83-100% for all assessed areas. The ChemSchematicResolver tool is released under the MIT license and is available to download from www.chemschematicresolver.org.

The ability to auto-generate databases of optical properties holds great prospects in data-driven materials discovery for optoelectronic applications. We present a cognate set of experimental and computational data that describes key features of optical absorption spectra. This includes an auto-generated database of 18,309 records of experimentally determined UV/vis absorption maxima, λ max , and associated extinction coefficients, ϵ, where present. This database was produced using the text-mining toolkit, ChemDataExtractor, on 402,034 scientific documents. High-throughput electronic-structure calculations using fast (simplified Tamm-Dancoff approach) and traditional (time-dependent) density functional theory were executed to predict λ max and oscillation strengths, f (related to ϵ) for a subset of validated compounds. Paired quantities of these computational and experimental data show strong correlations in λ max , f and ϵ, laying the path for reliable in silico calculations of additional optical properties. The total dataset of 8,488 unique compounds and a subset of 5,380 compounds with experimental and computational data, are available in MongoDB, CSV and JSON formats. These can be queried using Python, R, Java, and MATLAB, for data-driven optoelectronic materials discovery.

A patient with the Bernard Soulier Syndrome was successfully delivered of twins. The pregnancy was complicated by slight bleeding from the uterus during the first 8 weeks, by cord prolapse necessitating emergency caesarean section, and by moderate post partum haemorrhage. The management of pregnancy in the Bernard Soulier Syndrome is discussed.