120 results on '"Becker JS"'
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2. Developing a dialogue to understand public perceptions of petroleum exploration and inform future community engagement in New Zealand
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Becker, JS, Baker, V, Hollis, CJ, Waitaiki, H, and Try, D
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New Zealand reflects international trends of intense discourse, heightened public concern and growing social mobilisation against industries, policy agencies and, increasingly, science research organisations involved in petroleum exploration and extraction. Recent exploration activities in deep-sea petroleum basins have catalysed public concerns about greater uncertainties of the new technologies and possible environmental impacts. These concerns surrounding deep-sea exploration targets appear to be anchored in unresolved concerns relating to petroleum exploration, extraction and production. Within the context of this highly polarised debate, we conducted a pilot cycle of deliberative engagement to explore community perceptions of off-shore exploration in the Pegasus Basin – a deep-water target for petroleum exploration. This pilot study aimed to better understand perceptions of the potential risks and benefits of petroleum exploration, to identify underpinning themes, and explore if there might be ways to reframe more constructive conversations - to enable key policy and industry stakeholders to better address and resolve the fundamental concerns raised by participants. The project involved: a. focus group sessions with local Iwi (indigenous), and GNS staff (petroleum science, and non-petroleum science groups); b. a homework exercise canvassing viewpoints of petroleum in people’s wider social networks; c. a multi-stakeholder forum where focus group representatives met with stakeholders from the petroleum industry, central and regional government agencies. We identified several underpinning and interlocking perceptions. Firstly, was a lack of understanding about the extent to which society depends upon petroleum products for most facets of everyday life - meaning that benefits are less recognised than the risks. Secondly, was a lack of knowledge about the science of exploration. The public perceived risks from seismic surveying to marine life, the potential of seismic surveys to induce earthquakes, risks of spills or accidents, and a lack of local technologies for fast response and clean up. These risks sit uneasily with indigenous cultural environmental values. There was also apprehension from Iwi that their consent to exploration implied automatic consent to extraction, with a lack of checks and balances for meaningful input. Thirdly, were perceptions of the lack of consultation, transparency and apparent safeguards in the regulatory processes. All groups expressed a desire that government and industry improve community engagement practices. Trust and transparency were identified as fundamental issues to address before petroleum exploration might gain more credibility amongst the public. The pilot study confirmed the value of future research directions for two-way deliberative engagement to build greater transparency and deepen shared understanding across the different stakeholder perspectives. However, this is a controversial issue, bound by regulations. In this context, meaningful consultation in which communities can actually influence decisions can be difficult to guarantee. Suggestions for future approaches included: long-term transparent strategic planning about petroleum exploration, extraction, and its place in New Zealand’s future energy mix; more attention and analysis of the benefits for local communities from regional petroleum development; and reframing the conversation – from a focus solely on exploration and extraction, to petroleum’s present and future role in people’s lifestyles. (auth)
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- 2018
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3. Effective communication of Operational Earthquake Forecasts (OEF)
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Becker, JS, Potter, SH, McBride, SK, Gerstenberger, MC, and Christophersen, A
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Operational Earthquake Forecasts (OEFs) describe the time-dependent probabilities of earthquakes, and have been communicated for many earthquakes in New Zealand since 2010. This research sought to explore options for improving communication of OEFs both in the context of forecasts before a major earthquake, and after a major earthquake has occurred. In October 2015, we conducted a workshop with 14 participants from a range of organisations in Wellington to understand how earthquake forecasting might be of use to them, how they would like an OEF communicated to them, and their perceived challenges for OEFs. We found that there was a high level of support for OEFs, and a wide range of potential uses of the information, including to assist with their understanding of risk, planning, informing decisions and actions, and informing their communications with the public. Participants suggested that they would like to receive OEF information in multiple formats, although maps were the most popular. We describe the time windows, thresholds, and variables that the participants would like the information to be framed in. Our findings support the notion that much can be done to prepare OEF communications in advance of the next event, and that relationships should be built between agencies to develop trust and ease of communication in an event. We suggest that there be investigation and co-development of preparedness and response actions that can accompany OEF information, and further research into user needs for OEF communications. Findings from this research will be used to inform the development of future OEF generation and communication. (auth)
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- 2018
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4. Perspectives on future hazards research
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Becker, JS
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The Natural Hazards Research Platform (NHRP) and Resilience to Nature's Challenges (Resilience Challenge, RNC) research initiatives will merge within the next two years. The research community, in consultation with stakeholders, has been tasked by the Ministry of Business Innovation and Employment (MBIE) to agree on a future pathway for natural hazards, risk and societal impacts research. The merger of NHRP and RNC will become a redefined Phase 2 Resilience Challenge, with associated funding arrangements. An online survey was distributed to members of the research community during September 2017. The purpose of this survey was to gain perspectives from the research community on future research needs. This report provides the tabulated data results and brief discussion of 66 responses to the survey received from the research community. The respondents valued the flexible and accessible contestable funding, as well as the clear central governance, that the NHRP provided. In addition, they also valued the user driven science and collaborative approach of the RNC. Respondents also listed that a focus to drive forwards risk and risk communication research, applied flood research, and understandings of climate change on hazard and risk are considered critical areas for the future of resilience research. This brief survey highlights the need and one approach for inclusive methods for capturing science users and producers’ perspectives on changing funding mechanisms in New Zealand. Recommendations for future engagement include targeted sampling to ensure all hazardrelated sectors are equally represented and embedding these surveys within a regular framework for participatory research strategy development. (auth)
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- 2018
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5. New Zealand 2012 ShakeOut drill
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Becker, JS, Coomer, MA, Potter, SH, and McBride, SK
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New Zealand ShakeOut is a national earthquake drill that was first held on 26 September 2012 at 9:26 am. The New Zealand ShakeOut campaign was based on international ShakeOut drill activities and was organised by the Ministry of Civil Defence & Emergency Management. It focussed on educating New Zealanders about what to do in an earthquake, communicating the ‘Drop, Cover, Hold’ message, and asking people to practice the ‘Drop, Cover, Hold’ action in an official drill. People were asked to sign up to the ShakeOut website to indicate participation in the drill. In addition to the drill, a number of other activities were also promoted, including undertaking preparedness for earthquakes, emergency response planning and exercising. Approximately 1.3 million people from businesses, schools, institutions, community groups and families registered to the New Zealand ShakeOut website and participated in the drill. An initial evaluation of the ShakeOut drill was undertaken immediately following the event in 2012, by asking people to fill in observer forms which reported on what people did before, during and after the exercise (McBride et al., 2013). Initial findings indicated that large proportions of respondents (over 60%) were observed to ‘Drop, Cover and Hold’ in the drill. Schools and workplaces readily participated in the activity. Some respondents had difficulty participating due to embarrassment, health or disability issues. One of the questions regarding the ShakeOut drill is whether participants had a longer-term benefit (such as they continued to ‘Drop, Cover and Hold’ for drills or real earthquakes, or they increased their preparedness for earthquakes). To investigate this question, a follow-up survey was sent to a random sample of 5000 people who had signed up to the ShakeOut website, and who indicated that they could be contacted in the future. This survey was sent out one year after the 2012 ShakeOut drill. Additionally, the survey was promoted via the GeoNet and GNS Science social media accounts (Facebook and Twitter). A total of 1158 people answered the survey, 922 of whom had signed up to the ShakeOut website. This report presents the results of the survey in data table format. The results indicate that the majority of respondents who registered on the ShakeOut website participated in ShakeOut. Respondents had good memory of the need to ‘Drop, Cover and Hold’ if they felt an earthquake inside, but were more uncertain of what to do if they felt an earthquake whilst outside. The ShakeOut drill may have helped develop factors of community resilience and to prompt desirable actions such as creating an emergency plan (approx. 20% of respondents) or gathering together preparedness items (5–20%). Participants of ShakeOut were also found to be more likely to respond correctly during a real earthquake.
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- 2017
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6. Effective input of earthquake science and engineering information into decision-making: Results of a workshop discussion, 26 April 2017
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Becker, JS, Carter, L, Brower, A, McBride, SK, Beaven, S, Schoenfeld, M, and Johnston, DM
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A three-hour workshop on earthquake science-to-practice was held in Wellington, New Zealand on 26 April 2017. The objective was to provide a forum to discuss the contribution of earthquake science and engineering to decision-making (with a focus on policy). Over 40 people attended, from disciplines that included earthquake science, structural engineering, engineering geology, social science, and economics; and relevant sectors such as emergency management, policy (at local, regional and central government levels), consultancies, and insurance. The workshop provided a useful forum for getting people together to discuss science-to-practice issues and opportunities. It allowed participants to think more broadly about potential barriers (i.e. from communication through to collaboration), and consider how people can work together better within current decision-making environments. There is considerable scope for future initiatives of this kind, which raise awareness, broaden perspectives and build relationships to support future decision-making.
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- 2017
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7. Community engagement on future petroleum exploration in New Zealand
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Becker, JS, Baker, V, Hollis, CJ, Roncaglia, L, and Coyle, FJ
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This literature review sought to identify effective approaches to engaging with communities on the topic of petroleum exploration (i.e. exploration for oil and gas). Community engagement is often utilised to help build constructive dialogue to explore controversial policy areas, such as that related to petroleum exploration. The aims of community engagement typically include supporting open and honest debate, building enhanced public understanding of complex socio-technical topics, alerting policy and industry to public concerns so these can be better addressed, acknowledging different perspectives, identifying possible solutions, and involving the public in decision-making. In practice, the success of engagement approaches can vary. In reviewing the literature key success factors we identified for effective engagement included: developing a comprehensive engagement strategy and plan; understanding the context (e.g. location, stakeholders, individual and social influences, political pressures); developing relationships; using a diversity of appropriate and timely engagement methods that ensure a two-way discussion; empowering the community to be involved in effective decision-making; evaluating effort and monitoring outcomes. Two-way discussion in small and large scale deliberative formats has been seen to be effective in terms of engaging stakeholders, and is a methodology we will use in future initiatives.
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- 2017
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8. Understanding functional earthquake readiness
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Paton, D, Anderson, E, Becker, JS, and Petersen, J
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Natural processes (e.g. seismic, volcanic etc.) become natural hazards when their actions threaten people and/or what they value; be it human life, animals or infrastructure. A significant influence on whether a hazard event becomes a disaster (i.e. exceeds community/societal capacity to absorb or respond to impacts) is readiness. Readiness has been defined in a variety of ways by previous researchers including undertaking ‘survival actions’ such as collecting water and food, undertaking ‘structural actions’ such as retrofitting a building to prevent damage in a disaster, learning survival skills, undertaking planning, and performing social actions. Given the diversity of ways in which the term ‘readiness’ can be interpreted it is clear that a better understanding is needed of what readiness means to people. This study explored whether readiness, usually measured as a variable comprising homogenous items, actually comprises of several distinct, but related categories. How people think about and categorise hazard readiness has important implications for understanding why some people and communities are prepared for hazards and others are not. A better understanding of how people interpret readiness can also assist with identifying relevant interventions that encourage future preparedness in populations.
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- 2017
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9. Earthquake awareness and preparedness in Auckland - a 2016 survey
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Johnston, DM, Becker, JS, Orchiston, C, Egbelakin, T, Thompson, MA, and Coomer, MA
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The purpose of the survey was to assess the earthquake awareness and preparedness in Auckland, as part of a wider survey including Oamaru and Dunedin, and Hamilton. The survey invited residents to participate in a study seeking to develop a clearer understanding of earthquake awareness and preparedness. A total of 1500 surveys were delivered to Auckland residents on 8th November 2016. Preparedness for earthquakes and other hazards is critical in the recovery of affected communities in the aftermath of such events as the Christchurch Earthquake in 2011. This study wishes to develop a clearer understanding of the factors involved in hazard preparedness for individuals and communities. The study will be exploring the actions people and communities may have undertaken, or intend to undertake to prepare for earthquakes. This report provides the tabulated data results from a community survey completed in Auckland. (auth)
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- 2017
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10. Earthquake awareness and preparedness in Dunedin and Oamaru - a 2016 survey
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Johnston, DM, Becker, JS, Orchiston, C, Egbelakin, T, and Coomer, MA
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The purpose of the survey was to assess the earthquake awareness and preparedness in Oamaru and Dunedin, as part of a wider survey including Auckland and Hamilton. The survey invited residents to participate in a study seeking to develop a clearer understanding of earthquake awareness and preparedness. A total of 500 surveys were delivered to both Oamaru and Dunedin residents. Preparedness for earthquakes and other hazards is critical in the recovery of affected communities in the aftermath of such events as the Christchurch Earthquake in 2011. This study wishes to develop a clearer understanding of the factors involved in hazard preparedness for individuals and communities. The study will be exploring the actions people and communities may have undertaken, or intend to undertake to prepare for earthquakes. This report provides the tabulated data results from a community survey completed in Oamaru and Dunedin. (auth)
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- 2017
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11. Earthquake awareness and preparedness in Hamilton - a 2016 survey
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Johnston, DM, Becker, JS, Orchiston, C, Egbelakin, T, Thompson, MA, Pace, B, and Coomer, MA
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behavioral disciplines and activities - Abstract
The purpose of the survey was to assess the earthquake awareness and preparedness in Hamilton, as part of a wider survey including Auckland, and Oamaru and Dunedin. The survey invited residents to participate in a study seeking to develop a clearer understanding of earthquake awareness and preparedness. A total of 500 surveys were delivered to Hamilton residents, with 65 returned. Preparedness for earthquakes and other hazards is critical in the recovery of affected communities in the aftermath of such events as the Christchurch Earthquake in 2011. This study wishes to develop a clearer understanding of the factors involved in hazard preparedness for individuals and communities. The study will be exploring the actions people and communities may have undertaken, or intend to undertake to prepare for earthquakes. This report provides the tabulated data results from a community survey completed in Hamilton. (auth)
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- 2017
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12. Community understanding of tsunami risk in Coastal Washington: 2016 focus group study
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Orchiston, C, Johnston, DM, Becker, JS, Boersen, K, Jensen, S, Lambie, E, and Jellum, C
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Cascadia Subduction Zone ,emergency preparedness ,community surveys ,earthquakes ,tsunamis - Abstract
This report presents findings from focus groups conducted in April 2016. Data collection took place in both Pacific and Grays Harbor Counties in western Washington (Figure 2.1). Focus group participants were also asked to complete a short questionnaire investigating tsunami awareness and understanding of appropriate preparedness and response actions. The survey was designed to gather additional information from participants with specific reference to tsunami and earthquake hazard preparedness and evacuation behaviours.
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- 2016
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13. GWRC flood warning review phase 2 & 3
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Leonard, GS, Woods, RJ, Becker, JS, and Potter, SH
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monitoring ,flooding ,warning systems ,best practice ,emergency management ,risk management - Abstract
Providing effective flood warning services is a critical role for Greater Wellington Regional Council (GWRC). Currently, flood warning services in the Wellington Region are provided across three parts of GWRC: Flood Protection, Environment Science and Wellington Region Emergency Management Office (WREMO). The current arrangement pre-dates the establishment of WREMO. The current system has not been reviewed recently and has never had a comprehensive review on service provision or delivery. To remedy this, a review of flood warning is currently being undertaken by GWRC. This report contributes to the review of the GWRC flood warning system. It reviews the level of alignment of the current GWRC flood warning system against proposed new Levels of Service (LOS). It specifically supports the GWRC Flood Warning Review Project Phases 2 & 3 and informs the development of an implementation plan for Phase 4. The review work undertaken for this report consisted of several phases: 1. A review of documentation about the current GWRC warning system (e.g. warning system arrangements, telemetry; plans, etc.); 2. Stakeholder engagement workshops to investigate the Level of Service anticipated by stakeholders, and analysis of the workshop findings to see how this fits with the proposed LOS; 3. A series of meetings with relevant agencies (e.g. GWRC, WREMO, GeoNet, MetService, Wellington Water) to explore current warning arrangements and alignment with the proposed LOS.
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- 2016
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14. New Zealand ShakeOut 2015
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Becker, JS, Coomer, MA, McBride, SK, and Lambie, E
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The 2015 New Zealand ShakeOut, organised by the Ministry of Civil Defence and Emergency Management (MCDEM), was the second national earthquake drill to be held in New Zealand. The drill was held on 15 October 2015 at 9:15 a.m., and 1.36 million participants took part in the drill. Participants were asked to ‘Drop, Cover and Hold’ in response to a potential earthquake. Along with the drill, other preparedness activities such as creating an emergency plan, preparing a survival kit, and practising evacuations were promoted as part of the ShakeOut. Volunteers were asked to observe the drill and to fill in a MCDEM observers form about how people participated. More than 3000 observer forms were analysed to provide information on the effectiveness of the ShakeOut exercise in educating people about what to do during an earthquake. In 2012, similar research was conducted during the 2012 ShakeOut drill (McBride et al., 2014). With data from both ShakeOut drills, trends can be identified longitudinally. This report provides a summary of the findings of the observer forms and includes tables with comparisons to the 2012 ShakeOut drill findings. In both the 2012, and the 2015 ShakeOut drills it was found that workplaces had the highest level of participation in the exercise, and that places of education such as schools and tertiary institutes were the next highest group of participants. In terms of regional participation, Auckland had the largest proportion of observer forms returned, followed by Wellington. Canterbury and Waikato also returned good numbers of observer sheets. Communication channels, like social media, email and websites, showed some growth regarding their use, while traditional media and face-to-face communication decreased overall. Over half of the 2015 observers reported participating in the 2012 ShakeOut drill, and over 75% reported that their organisation would be willing to participate in an annual ShakeOut exercise. (auth)
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- 2016
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15. Behavioral Response in the Immediate Aftermath of Shaking: Earthquakes in Christchurch and Wellington, New Zealand, and Hitachi, Japan.
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Jon, I, Lindell, MK, Prater, CS, Huang, S-K, Wu, H-C, Johnston, DM, Becker, JS, Shiroshita, H, Doyle, EEH, Potter, SH, McClure, J, Lambie, E, Jon, I, Lindell, MK, Prater, CS, Huang, S-K, Wu, H-C, Johnston, DM, Becker, JS, Shiroshita, H, Doyle, EEH, Potter, SH, McClure, J, and Lambie, E
- Abstract
This study examines people's response actions in the first 30 min after shaking stopped following earthquakes in Christchurch and Wellington, New Zealand, and Hitachi, Japan. Data collected from 257 respondents in Christchurch, 332 respondents in Hitachi, and 204 respondents in Wellington revealed notable similarities in some response actions immediately after the shaking stopped. In all four events, people were most likely to contact family members and seek additional information about the situation. However, there were notable differences among events in the frequency of resuming previous activities. Actions taken in the first 30 min were weakly related to: demographic variables, earthquake experience, contextual variables, and actions taken during the shaking, but were significantly related to perceived shaking intensity, risk perception and affective responses to the shaking, and damage/infrastructure disruption. These results have important implications for future research and practice because they identify promising avenues for emergency managers to communicate seismic risks and appropriate responses to risk area populations.
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- 2016
16. German Chemical Society (GDCh) Biannual Conference in Munich 2003
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Küppers S, Wittstock G, Steinwand M, Reiner Salzer, Gauglitz G, and Becker Js
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German ,Political science ,language ,Library science ,Biochemistry ,language.human_language ,Analytical Chemistry ,Chemical society - Published
- 2004
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17. Determination of 236 U and transuranium elements in depleted uranium ammunition by α-spectrometry and ICP-MS
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Sergei F. Boulyga, Becker Js, Maria Assunta Meli, C. Testa, Carla Roselli, and Donatella Desideri
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Uranium-236 ,Radiochemistry ,chemistry.chemical_element ,Actinide ,Uranium ,Natural uranium ,Biochemistry ,Analytical Chemistry ,Plutonium ,Inductively coupled plasma mass spectrometry ,chemistry ,Alpha spectrometry, Depleted uranium, Inductively coupled plasma mass spectrometry, Transuranium elements, Uranium-236 ,Depleted uranium ,Alpha spectrometry ,Transuranium elements ,Transuranium element ,Nuclear chemistry - Abstract
It is well known that ammunition containing depleted uranium (DU) was used by NATO during the Balkan conflict. To evaluate the origin of DU (the enrichment of natural uranium or the reprocessing of spent nuclear fuel) it is necessary to directly detect the presence of activation products ((236)U, (239)Pu, (240)Pu, (241)Am, and (237)Np) in the ammunition. In this work the analysis of actinides by alpha-spectrometry was compared with that by inductively coupled plasma mass spectrometry (ICP-MS) after selective separation of ultratraces of transuranium elements from the uranium matrix. (242)Pu and (243)Am were added to calculate the chemical yield. Plutonium was separated from uranium by extraction chromatography, using tri- n-octylamine (TNOA), with a decontamination factor higher than 10(6); after elution plutonium was determined by ICP-MS ((239)Pu and (240)Pu) and alpha-spectrometry ((239+240)Pu) after electroplating. The concentration of Pu in two DU penetrator samples was 7 x 10(-12) g g(-1) and 2 x 10(-11) g g(-1). The (240)Pu/(239)Pu isotope ratio in one penetrator sample (0.12+/-0.04) was significantly lower than the (240)Pu/(239)Pu ratios found in two soil samples from Kosovo (0.35+/-0.10 and 0.27+/-0.07). (241)Am was separated by extraction chromatography, using di(2-ethylhexyl)phosphoric acid (HDEHP), with a decontamination factor as high as 10(7). The concentration of (241)Am in the penetrator samples was 2.7 x 10(-14) g g(-1) and9.4 x 10(-15) g g(-1). In addition (237)Np was detected at ultratrace levels. In general, ICP-MS and alpha-spectrometry results were in good agreement. The presence of anthropogenic radionuclides ((236)U, (239)Pu,(240)Pu, (241)Am, and (237)Np) in the penetrators indicates that at least part of the uranium originated from the reprocessing of nuclear fuel. Because the concentrations of radionuclides are very low, their radiotoxicological effect is negligible.
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- 2002
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18. Inhibition der Dihydroorotat-Dehydrogenase mit Leflunomid bzw. seinem aktiven Metaboliten A771726 führt zur Proliferationshemmung von Pankreaskarzinom-Zellen in vitro sowie zur Reduktion der Tumorvolumina im SCID-Maus-Modell in vivo
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Dietz, C, Becker, JS, Hennig, S, Welter, V, Celik, I, and Bartsch, DK
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ddc: 610 ,610 Medical sciences ,Medicine - Abstract
Einleitung: Die Dihydroorotat-Dehydrogenase (DHODH) nimmt als einziges mitochondrial lokalisiertes Enzym eine Schlüsselfunktion in der Pyrimidinbiosynthese ein. Leflunomid wird seit vielen Jahren in der Therapie der rheumatoiden Arthritis angewandt. Durch hepatische Metabolisation (Ringspaltung)[for full text, please go to the a.m. URL], 126. Kongress der Deutschen Gesellschaft für Chirurgie
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- 2009
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19. Potential novel diagnostic applications of laser ablation inductively coupled plasma mass spectrometry in trace metal imaging of hepatic metal disorders
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Weiskirchen, R, primary, Uerlings, R, additional, Zimmermann, A, additional, and Becker, JS, additional
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- 2014
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20. The incidence of isolation of Candida species from the human foot
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Hodge Wr, Green R, Abel Rb, and Becker Js
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Adult ,Adolescent ,Isolation (health care) ,Foot ,business.industry ,Incidence (epidemiology) ,General Medicine ,Middle Aged ,Microbiology ,Humans ,Medicine ,business ,Foot (unit) ,Aged ,Candida ,Skin - Published
- 1976
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21. The incidence of isolation of Candida species from the human foot
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Abel, RB, primary, Becker, JS, primary, Green, R, primary, and Hodge, WR, primary
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- 1976
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22. Indigenous Populations of a Biological Control Agent in Agricultural Field Soils Predicted Suppression of a Plant Pathogen.
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Becker JS, Ruegger PM, Borneman J, and Becker JO
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- Female, Humans, Soil, Biological Control Agents, Plant Diseases prevention & control, Vegetables, Indigenous Peoples, Sugars, Beta vulgaris, Cysts
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The nematophagous fungus Hyalorbilia oviparasitica and relatives ( Hyalorbilia spp.) are known to parasitize several endoparasitic nematodes. In this project, we hypothesized that indigenous populations of this fungus could be used to predict nematode suppression in agricultural field soils. We quantified Hyalorbilia spp. in soil samples from 44 different sugar beet fields in the Imperial Valley of California. Seven soils harboring Hyalorbilia spp. and two that tested negative for the fungi were examined for nematode suppressive activity. Untreated and autoclaved portions of each soil were planted with cabbage and infested with sugar beet cyst nematode ( Heterodera schachtii ) juveniles. Females and cysts of H. schachtii were enumerated after 12 weeks. In the seven soils harboring Hyalorbilia spp., females and cysts in the untreated soils were reduced by 61 to 82% compared with the autoclaved controls. Soils with no detectable Hyalorbilia spp. exhibited no nematode suppression. Two novel Hyalorbilia strains, HsImV25 and HsImV27, were isolated from H. schachtii females reared in field soil using an enrichment and double-baiting cultivation technique. Both strains suppressed H. schachtii populations by more than 80% in soil-based assays, confirming that Hyalorbilia spp. are the likely causal agents of the nematode suppression in these soils. This study demonstrated that indigenous populations of a hyperparasite ( Hyalorbilia spp.) in agricultural field soils predicted suppressive activity against a soilborne plant pathogen ( H. schachtii ). To our knowledge, this is the first report to demonstrate this capability. We anticipate that this research will provide a blueprint for other similar studies, thereby advancing the field of soilborne biological control., Competing Interests: The author(s) declare no conflict of interest.
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- 2024
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23. COVID-19 vaccine intentions in Aotearoa New Zealand: Behaviour, risk perceptions, and collective versus individual motivations.
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Vinnell LJ, Becker JS, Doyle EEH, and Gray L
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The global SARS-CoV-2 (COVID-19) pandemic presents a pressing health challenge for all countries, including Aotearoa New Zealand (NZ). As of early 2022, NZ public health measures have reduced impacts of the pandemic, but ongoing efforts to limit illness and fatalities will be significantly aided by widescale uptake of available vaccines including COVID-19 booster doses. Decades of research have established a broad range of demographic, social, cognitive, and behavioural factors which influence peoples' uptake of vaccinations, including a large amount of research in the last two years focused on COVID-19 vaccination in particular. In this study, we surveyed people in New Zealand ( N = 660) in May and June of 2021, at which point the vaccine had been made available to high-risk groups. We explored individual versus collective motivations, finding that people who were hesitant about COVID-19 vaccination scored lower on independent self-construals (how people define themselves) but higher on community identity, weaker but still positive perceived social norms, lower general risk of COVID-19 to New Zealanders and higher vaccine risk for both themselves and others, and lower response-efficacy both for personal and collective benefits. Overall, the findings suggest some benefit of collective over individual appeals, but that generally messaging to encourage vaccination should focus on conveying social norms, risk from COVID-19 broadly, and vaccine safety and efficacy., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 The Author(s). Published by Elsevier B.V.)
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- 2023
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24. Global trends in ozone concentration and attributable mortality for urban, peri-urban, and rural areas between 2000 and 2019: a modelling study.
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Malashock DA, Delang MN, Becker JS, Serre ML, West JJ, Chang KL, Cooper OR, and Anenberg SC
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- United States, Humans, Latin America, Seasons, Ozone adverse effects, Ozone analysis, Air Pollution adverse effects, Respiratory Tract Diseases chemically induced
- Abstract
Background: Data on long-term trends of ozone exposure and attributable mortality across urban-rural catchment areas worldwide are scarce, especially for low-income and middle-income countries. This study aims to estimate trends in ozone concentrations and attributable mortality for urban-rural catchment areas worldwide., Methods: In this modelling study, we used a health impact function to estimate ozone concentrations and ozone-attributable chronic respiratory disease mortality for urban areas worldwide, and their surrounding peri-urban, peri-rural, and rural areas. We estimated ozone-attributable respiratory health outcomes using a modified Global Burden of Diseases, Injuries, and Risk Factors 2019 Study approach. We evaluate long-term trends with linear regressions of annual ozone concentrations and ozone-attributable mortality against time in years, and examined the influence of each health impact function input parameter to temporal changes in ozone-attributable disease burden estimates for 12 946 cities worldwide by region, from 2000 to 2019., Findings: Ozone-attributable mortality worldwide increased by 46% from 2000 (290 400 deaths [95% CI 151 800-457 600]) to 2019 (423 100 deaths [95% CI 223 200-659 400]). The fraction of global ozone-attributable mortality occurring in peri-urban areas remained unchanged from 2000 to 2019 (56%), whereas urban areas gained in their share of global ozone-attributable burden (from 35% to 37%; 54 000 more deaths). Across all cities studied, average population-weighted mean ozone concentration increased by 11% (46 parts per billion [ppb] to 51 ppb). The number of cities with concentrations above the WHO peak season ozone standard (60 μg/m
3 ) increased from 11 568 (89%) of 12 946 cities in 2000 to 12 433 (96%) cities in 2019. Percent change in ozone-attributable mortality averaged across 11 032 cities within each region from 2000 to 2019 ranged from -62% in eastern Europe to 350% in tropical Latin America. The contribution of ozone concentrations, population size, and baseline chronic respiratory disease rates to the change in ozone-attributable mortality differed regionally., Interpretation: Ozone exposure is increasing worldwide, contributing to disproportionate ozone mortality in peri-urban areas and increasing ozone exposure and attributable mortality in urban areas worldwide. Reducing ozone precursor emissions in areas affecting urban and peri-urban exposure can yield substantial public health benefits., Funding: NASA Health and Air Quality Applied Sciences Team, the National Institute for Occupational Safety and Health, and the NOAA Co-operative Agreement with the Cooperative Institute for Research in Environmental Sciences., Competing Interests: Declaration of interests The views in this manuscript are those of the authors alone and do not necessarily reflect the policy of their employers. DAM declares employment relationship with the US Environmental Protection Agency not affiliated with the submitted work. All other authors declare no competing interests., (Copyright © 2022 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY-NC-ND 4.0 license. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2022
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25. An Ultrasound Screening Exam During Medicare Wellness Visits May Be Beneficial.
- Author
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Rosborough TK, Becker JS, Desautels CN, Fennell NN, Lange AKS, Porter JL, Post BD, Shepherd MF, St Hill CA, and Tierney DM
- Subjects
- Aged, Aged, 80 and over, Humans, Internal Medicine, Physical Examination methods, Ultrasonography, United States, Mass Screening, Medicare
- Abstract
Objectives: The physical exam component of a periodic health visit in the elderly has not been considered useful. Standard Medicare Wellness visits require no physical exam beyond blood pressure and most physicians perform limited exams during these visits. The objective of this study was to test the feasibility, potential benefit, and costs of performing a screening ultrasound (US) exam during Medicare Wellness visits., Methods: A physician examiner at an academic internal medicine primary care clinic performed a screening US exam targeting important abnormalities of patients 65-85 years old during a Medicare Wellness visit. The primary care physician (PCP) recorded the follow-up items for each abnormality identified by the US examiner and assessed the benefit of each abnormality for the participant. Abnormality benefit, net exam benefit per participant, follow-up items and costs, participant survey results, and exam duration were assessed., Results: Participants numbered 108. Total abnormalities numbered 283 and new diagnoses were 172. Positive benefit scores were assigned to 38.8%, neutral (zero) scores to 59.4%, and negative benefit scores to 1.8% of abnormalities. Net benefit scores per participant were positive in 63.9%, 0 in 34.3%, and negative in 1.8%. Follow-up items were infrequent resulting in 76% of participants without follow-up cost. Participant survey showed excellent acceptance of the exam., Conclusions: The US screening exam identified frequent abnormalities in Medicare Wellness patients. The assessed benefits were rarely negative and often mild to moderately positive, with important new chronic conditions identified. Follow-up costs were low when the PCPs were also US experts., (© 2021 American Institute of Ultrasound in Medicine.)
- Published
- 2022
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26. The lived experience of hotel isolation and quarantine at the Aotearoa New Zealand border for COVID-19: A qualitative descriptive study.
- Author
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Gray L, MacDonald C, Puloka A, Bocock C, Gwyther R, Rushton A, Puloka V, Becker JS, Kvalsvig A, and Baker MG
- Abstract
Hotel-based Managed Isolation and Quarantine (MIQ) is a key public health intervention in Aotearoa New Zealand's (NZ) COVID-19 border control strategy for returning citizens and permanent residents. We aimed to investigate the experience of transiting through MIQ in NZ, to inform future refinements of this type of system. A qualitative thematic analysis method was utilised to explore experiences in depth with seventy-five individuals who had undergone MIQ in NZ between April 2020 and July 2021. Participants were interviewed by telephone or Zoom or completed an online qualitative questionnaire. Interviews were audio recorded, transcribed and coded; questionnaire responses were sorted and coded. All data were subjected to thematic analysis. Three main themes described the key elements of the participants' experience of MIQ that influenced their overall experiences: 1) The MIQ process, 2) MIQ Hotels, and 3) Individual experience. The variation in participants' overall experience of MIQ was strongly influenced by their perceptions of how well the MIQ process was managed (including communication, flexibility, and compliance with disease prevention and control measures); and the quality of the hotels they were allocated to (in particular hotel staff, meals and information). This valuable insight into the experience of individuals in NZ MIQ hotels can inform better planning, management and implementation of the MIQ process for NZ and adds to the literature of countries utilising such strategies to minimise the transmission of COVID-19, whilst protecting the wellbeing of those using the system., Competing Interests: The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Lesley Gray reports financial support was provided by Health Research Council of New Zealand., (© 2022 Elsevier Ltd. All rights reserved.)
- Published
- 2022
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27. Author Correction: Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements.
- Author
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McCarthy RL, Kaeding KE, Keller SH, Zhong Y, Xu L, Hsieh A, Hou Y, Donahue G, Becker JS, Alberto O, Lim B, and Zaret KS
- Published
- 2021
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28. Diverse heterochromatin-associated proteins repress distinct classes of genes and repetitive elements.
- Author
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McCarthy RL, Kaeding KE, Keller SH, Zhong Y, Xu L, Hsieh A, Hou Y, Donahue G, Becker JS, Alberto O, Lim B, and Zaret KS
- Subjects
- Cells, Cultured, Conserved Sequence, Hep G2 Cells, Histones metabolism, Humans, Chromosomal Proteins, Non-Histone physiology, Gene Expression Regulation, Heterochromatin physiology
- Abstract
Heterochromatin, typically marked by histone H3 trimethylation at lysine 9 (H3K9me3) or lysine 27 (H3K27me3), represses different protein-coding genes in different cells, as well as repetitive elements. The basis for locus specificity is unclear. Previously, we identified 172 proteins that are embedded in sonication-resistant heterochromatin (srHC) harbouring H3K9me3. Here, we investigate in humans how 97 of the H3K9me3-srHC proteins repress heterochromatic genes. We reveal four groups of srHC proteins that each repress many common genes and repeat elements. Two groups repress H3K9me3-embedded genes with different extents of flanking srHC, one group is specific for srHC genes with H3K9me3 and H3K27me3, and one group is specific for genes with srHC as the primary feature. We find that the enhancer of rudimentary homologue (ERH) is conserved from Schizosaccharomyces pombe in repressing meiotic genes and, in humans, now represses other lineage-specific genes and repeat elements. The study greatly expands our understanding of H3K9me3-based gene repression in vertebrates., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2021
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29. Mapping Yearly Fine Resolution Global Surface Ozone through the Bayesian Maximum Entropy Data Fusion of Observations and Model Output for 1990-2017.
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DeLang MN, Becker JS, Chang KL, Serre ML, Cooper OR, Schultz MG, Schröder S, Lu X, Zhang L, Deushi M, Josse B, Keller CA, Lamarque JF, Lin M, Liu J, Marécal V, Strode SA, Sudo K, Tilmes S, Zhang L, Cleland SE, Collins EL, Brauer M, and West JJ
- Subjects
- Africa, Asia, Bayes Theorem, Entropy, Environmental Monitoring, Humans, Russia, United States, Air Pollutants analysis, Air Pollution analysis, Ozone analysis
- Abstract
Estimates of ground-level ozone concentrations are necessary to determine the human health burden of ozone. To support the Global Burden of Disease Study, we produce yearly fine resolution global surface ozone estimates from 1990 to 2017 through a data fusion of observations and models. As ozone observations are sparse in many populated regions, we use a novel combination of the M
3 Fusion and Bayesian Maximum Entropy (BME) methods. With M3 Fusion, we create a multimodel composite by bias-correcting and weighting nine global atmospheric chemistry models based on their ability to predict observations (8834 sites globally) in each region and year. BME is then used to integrate observations, such that estimates match observations at each monitoring site with the observational influence decreasing smoothly across space and time until the output matches the multimodel composite. After estimating at 0.5° resolution using BME, we add fine spatial detail from an additional model, yielding estimates at 0.1° resolution. Observed ozone is predicted more accurately ( R2 = 0.81 at the test point, 0.63 at 0.1°, and 0.62 at 0.5°) than the multimodel mean ( R2 = 0.28 at 0.5°). Global ozone exposure is estimated to be increasing, driven by highly populated regions of Asia and Africa, despite decreases in the United States and Russia.- Published
- 2021
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30. Utility of Hypertonic Saline and Diazepam in COVID-19-Related Hydroxychloroquine Toxicity.
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Mahan KM, Hayes BD, North CM, Becker JS, Fenves AZ, Hyppolite G, Khosrowjerdi S, Sinden D, and Stearns DA
- Subjects
- Adult, Electrocardiography, Emergency Service, Hospital, Heart Block therapy, Humans, Long QT Syndrome therapy, Male, SARS-CoV-2, Diazepam therapeutic use, Heart Block chemically induced, Hydroxychloroquine poisoning, Hypnotics and Sedatives therapeutic use, Long QT Syndrome chemically induced, Poisoning therapy, Saline Solution, Hypertonic therapeutic use, COVID-19 Drug Treatment
- Abstract
Background: Hydroxychloroquine (HCQ) poisoning is a life-threatening but treatable toxic ingestion. The scale of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection (COVID-19) and the controversial suggestion that HCQ is a treatment option have led to a significant increase in HCQ use. HCQ poisoning should be at the top-of-mind for emergency providers in cases of toxic ingestion. Treatment for HCQ poisoning includes sodium bicarbonate, epinephrine, and aggressive electrolyte repletion. We highlight the use of hypertonic saline and diazepam., Case Report: We describe the case of a 37-year-old man who presented to the emergency department after the ingestion of approximately 16 g of HCQ tablets (initial serum concentration 4270 ng/mL). He was treated with an epinephrine infusion, hypertonic sodium chloride, high-dose diazepam, sodium bicarbonate, and aggressive potassium repletion. Persistent altered mental status necessitated intubation, and he was managed in the medical intensive care unit until his QRS widening and QTc prolongation resolved. After his mental status improved and it was confirmed that his ingestion was not with the intent to self-harm, he was discharged home with outpatient follow-up. WHY SHOULD AN EMERGENCY PHYSICIAN BE AWARE OF THIS?: For patients presenting with HCQ overdose and an unknown initial serum potassium level, high-dose diazepam and hypertonic sodium chloride should be started immediately for the patient with widened QRS. The choice of hypertonic sodium chloride instead of sodium bicarbonate is to avoid exacerbating underlying hypokalemia which may in turn potentiate unstable dysrhythmia. In addition, early intubation should be a priority in vomiting patients because both HCQ toxicity and high-dose diazepam cause profound sedation., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2021
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31. Effect of Heterodera schachtii female age on susceptibility to three fungal hyperparasites in the genus Hyalorbilia .
- Author
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Becker JS, Borneman J, and Becker JO
- Abstract
Three closely related nematophagous fungi in the genus Hyalorbilia were compared for their ability to parasitize females and eggs of Heterodera schachtii at different developmental stages. DoUCR50, StM, and ARF were originally isolated from Heterodera schachtii , Meloidogyne incognita, and Heterodera glycines , respectively. Phylogenetic analysis and pairwise sequence analysis showed that DoUCR50 and StM are more closely related to each other than they are to ARF. DoUCR50 parasitism suppressed 100% of the J2 hatch from 3-week-old H. schachtii females and 75% of the hatch from 4-week-old females. Eggs within 5-week-old females were resistant to parasitism, and hatch of J2 was unaffected by exposure to DoUCR50. StM and ARF did not reduce the hatch of J2 from H. schachtii females of any age. Eggs removed from females and spread onto water agar cultures of the fungi were mostly resistant to parasitism. DoUCR50 parasitized only 16% of such eggs from 3-week-old females. Extracellular hydrolytic enzyme production by the three fungal strains grown on PDA or parasitized H. schachtii females was evaluated using API ZYM (bioMérieux) test strips. All three fungi produced extracellular hydrolytic enzymes when grown on PDA or H. schachtii females. Trypsin-like protease activity was uniquely detected in DoUCR50 grown on PDA and H. schachtii females, with the highest activity associated with the fungus grown on parasitized females., (© 2020 Authors.)
- Published
- 2020
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32. Targeting IDH Mutations in AML: Wielding the Double-edged Sword of Differentiation.
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Becker JS and Fathi AT
- Subjects
- Animals, Antineoplastic Agents pharmacology, Cell Differentiation drug effects, Enzyme Inhibitors pharmacology, Epigenesis, Genetic, Humans, Isocitrate Dehydrogenase antagonists & inhibitors, Isoenzymes genetics, Treatment Outcome, Antineoplastic Agents therapeutic use, Enzyme Inhibitors therapeutic use, Isocitrate Dehydrogenase genetics, Leukemia, Myeloid, Acute drug therapy, Leukemia, Myeloid, Acute genetics, Mutation
- Abstract
The genomic characterization of acute myeloid leukemia (AML) by DNA sequencing has illuminated subclasses of the disease, with distinct driver mutations, that might be responsive to targeted therapies. Approximately 15-23% of AML genomes harbor mutations in one of two isoforms of isocitrate dehydrogenase (IDH1 or IDH2). These enzymes are constitutive mediators of basic cellular metabolism, but their mutated forms in cancer synthesize an abnormal metabolite, 2- hydroxyglutarate, that in turn acts as a competitive inhibitor of multiple gene regulatory enzymes. As a result, leukemic IDH mutations cause changes in genome structure and gene activity, culminating in an arrest of normal myeloid differentiation. These discoveries have motivated the development of a new class of selective small molecules with the ability to inhibit the mutant IDH enzymes while sparing normal cellular metabolism. These agents have shown promising anti-leukemic activity in animal models and early clinical trials, and are now entering Phase 3 study. This review will focus on the growing preclinical and clinical data evaluating IDH inhibitors for the treatment of IDH-mutated AML. These data suggest that inducing cellular differentiation is central to the mechanism of clinical efficacy for IDH inhibitors, while also mediating toxicity for patients who experience IDH Differentiation Syndrome. Ongoing trials are studying the efficacy of IDH inhibitors in combination with other AML therapies, both to evaluate potential synergistic combinations as well as to identify the appropriate place for IDH inhibitors within existing standard-of-care regimens., (Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.net.)
- Published
- 2020
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33. Residents' Reactions to Earthquake Early Warnings in Japan.
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Nakayachi K, Becker JS, Potter SH, and Dixon M
- Subjects
- Humans, Japan, Risk, Earthquakes
- Abstract
This article empirically examines the effectiveness of earthquake early warning (EEW) in Japan based on experiences of residents who received warnings before earthquake shaking occurred. In Study 1, a survey (N = 299) was conducted to investigate residents' experiences of, and reactions to, an EEW issued in Gunma and neighboring regions on June 17, 2018. The main results were as follows. (1) People's primary reactions to the EEW were mental, not physical, and thus motionless. Most residents stayed still, not for safety reasons, but because they were focusing on mentally bracing themselves. (2) Residents perceived the EEW to be effective because it enabled them to mentally prepare, rather than take physical protective actions, before strong shaking arrived. (3) In future, residents anticipate that on receipt of an EEW they would undertake mental preparation as opposed to physical protective actions. In Study 2, a survey (N = 450) was conducted on another EEW issued for an earthquake offshore of Chiba Prefecture on July 7, 2018. Results were in line with those of Study 1, suggesting that the findings described above are robust. Finally, given people's lack of impetus to undertake protective action on receipt of an EEW, this article discusses ways to enhance such actions., (© 2019 Society for Risk Analysis.)
- Published
- 2019
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34. Autonomous Molecular Design: Then and Now.
- Author
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Dimitrov T, Kreisbeck C, Becker JS, Aspuru-Guzik A, and Saikin SK
- Subjects
- Computer Simulation, Drug Design, Machine Learning, Models, Molecular
- Abstract
The success of deep machine learning in processing of large amounts of data, for example, in image or voice recognition and generation, raises the possibilities that these tools can also be applied for solving complex problems in materials science. In this forum article, we focus on molecular design that aims to answer the question on how we can predict and synthesize molecules with tailored physical, chemical, or biological properties. A potential answer to this question could be found by using intelligent systems that integrate physical models and computational machine learning techniques with automated synthesis and characterization tools. Such systems learn through every single experiment in an analogy to a human scientific expert. While the general idea of an autonomous system for molecular synthesis and characterization has been around for a while, its implementations for the materials sciences are sparse. Here we provide an overview of the developments in chemistry automation and the applications of machine learning techniques in the chemical and pharmaceutical industries with a focus on the novel capabilities that deep learning brings in.
- Published
- 2019
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35. H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification.
- Author
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Nicetto D, Donahue G, Jain T, Peng T, Sidoli S, Sheng L, Montavon T, Becker JS, Grindheim JM, Blahnik K, Garcia BA, Tan K, Bonasio R, Jenuwein T, and Zaret KS
- Subjects
- Animals, Embryo, Mammalian, Female, Gene Expression Regulation, Developmental, Gene Silencing, Germ Layers cytology, Hepatocytes cytology, Insulin-Secreting Cells cytology, Methylation, Mice, Mice, Inbred C57BL, Mice, Knockout, Organogenesis, Cell Differentiation, Cell Lineage, Embryonic Stem Cells cytology, Heterochromatin genetics, Histones chemistry
- Abstract
Gene silencing by chromatin compaction is integral to establishing and maintaining cell fates. Trimethylated histone 3 lysine 9 (H3K9me3)-marked heterochromatin is reduced in embryonic stem cells compared to differentiated cells. However, the establishment and dynamics of closed regions of chromatin at protein-coding genes, in embryologic development, remain elusive. We developed an antibody-independent method to isolate and map compacted heterochromatin from low-cell number samples. We discovered high levels of compacted heterochromatin, H3K9me3-decorated, at protein-coding genes in early, uncommitted cells at the germ-layer stage, undergoing profound rearrangements and reduction upon differentiation, concomitant with cell type-specific gene expression. Perturbation of the three H3K9me3-related methyltransferases revealed a pivotal role for H3K9me3 heterochromatin during lineage commitment at the onset of organogenesis and for lineage fidelity maintenance., (Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2019
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36. Closed-loop discovery platform integration is needed for artificial intelligence to make an impact in drug discovery.
- Author
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Saikin SK, Kreisbeck C, Sheberla D, Becker JS, and A AG
- Subjects
- Humans, Machine Learning, Artificial Intelligence, Drug Development methods, Drug Discovery methods
- Published
- 2019
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37. Essential oils rich in monoterpenes are unsuitable as additives to boar semen extender.
- Author
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Cavalleri R, Becker JS, Pavan AM, Bianchetti P, Goettert MI, Ethur EM, and Bustamante-Filho IC
- Subjects
- Animals, Male, Monoterpenes analysis, Oils, Volatile chemistry, Oils, Volatile isolation & purification, Swine, Cymbopogon chemistry, Myrtaceae chemistry, Oils, Volatile toxicity, Semen Preservation veterinary, Spermatozoa drug effects
- Abstract
Despite the development of efficient boar semen extenders, there is still room for improvement of new formulas using new molecules that could increase fertilisation outcomes and substitute cryoprotectants and antibiotics. The goal of this work was to evaluate if the essential oils from the leaves of Myrrhinium atropurpureum and Cymbopogon citratus are suitable as additives in boar semen extender. The major compounds found in the essential oils from M. atropurpureum were 1,8-cineole (37.37%) and terpinolene (19.18%); and geranial (49.8%) and neral (33.24%) in essential oil of C. citratus. The addition of 1% and 0.1% of both essential oils to extended semen had immediate spermicidal effects (p < 0.05). Lower concentrations were tested and no cytotoxic effect was observed when M. atropurpureum essential oil was added at 0.001%. Differently, essential oil from C. citratus reduced sperm motility, membrane functionality and integrity and mitochondrial membrane potential even in concentrations as low as 0.001%. Also, addition of essential oils in low concentrations had no inhibitory effect against Escherichia coli and Pseudomonas aeruginosa growth. We conclude that the essential oils from C. citratus and M. atropurpureum, rich in monoterpenes, are cytotoxic to swine spermatozoa, therefore unsuitable as semen extender additives., (© 2018 Blackwell Verlag GmbH.)
- Published
- 2018
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38. Dracunculus infections in domestic dogs and cats in North America; an under-recognized parasite?
- Author
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Williams BM, Cleveland CA, Verocai GG, Swanepoel L, Niedringhaus KD, Paras KL, Nagamori Y, Little SE, Varela-Stokes A, Nemeth N, Wyrosdick H, Tucker A, Deal L, Gauthier D, Prouty S, DeAngelo C, Marsh A, Piepgras D, Cook LH, Milliren KB, Becker JS, Lyons C, Clark J, Stumph J, Borst MM, Craig T, Tucker KL, Ward A, Baird EM, Burke KA, Camp JW, Davis CA, Pulaski CN, and Yabsley MJ
- Subjects
- Alabama, Animals, Canada, Cat Diseases parasitology, Dog Diseases parasitology, Dracunculiasis epidemiology, Dracunculus Nematode isolation & purification, Dracunculus Nematode pathogenicity, Female, Male, North America epidemiology, North Carolina, Texas, Cat Diseases epidemiology, Cats parasitology, Dog Diseases epidemiology, Dogs parasitology, Dracunculiasis veterinary
- Abstract
We reviewed 62 new cases and 18 published reports of Dracunculus infections in domestic dogs and cats to describe the epidemiology of this parasite in dogs and cats in North America. We collected host and parasite data when available, including age, sex, and breed of dog, nematode location in the host, and any clinical signs at presentation and/or description of the apparent lesion. For dogs, infections were noted in six of the AKC breed groups, but none was reported from the toy group or the miscellaneous breed class. Age of infected dogs ranged from 7 months to 19 years (median 4 years; average 5.3 years), and infection rates were similar in male and female dogs. Most nematodes were associated with the distal extremities, but worms were also found in the chest/thorax, abdomen, head, and flank. Although most infected dogs had a single worm, three dogs had two or more worms that were collected from multiple lesions. Three new cat cases, with similar lesions, presentations and seasonality, were detected in Alabama, North Carolina and Texas. Cases were reported from a wide geographic range throughout eastern North America, during every month of the year, but 72% of infections were diagnosed in the late winter to early spring (December to May). All collected worms were larvigerous females which cannot be identified to species based on morphologic characters. Thus, we attempted to amplify and sequence a portion of the cytochrome c oxidase subunit I (COI) gene for specific identification. Although 13 worms from 12 cases were available, sequences were obtained for only eight worms from seven cases. These eight worms were D. insignis, a common parasite of raccoons (Procyon lotor) and other primarily carnivorous mammals. Female worms are the most likely to be detected in dogs and cats because male worms do not emerge, parasites should be preserved in ethanol for molecular identification. Although this study used convenience sampling of available data, we found that the parasite is widespread throughout the eastern US and Canada and that Dracunculus infections in dogs are more common than is revealed in published literature. However, more research is needed to understand the epidemiology, including transmission route(s), prevalence, and distribution of this parasite., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
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39. Point-of-Care Sinus Ultrasound: Impact Within a Large Internal Medicine Clinic and Review of Technique.
- Author
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Tierney DM, Becker JS, Post BD, and Rosborough TK
- Subjects
- Humans, Internal Medicine, Tomography, X-Ray Computed, Maxillary Sinus diagnostic imaging, Maxillary Sinusitis diagnostic imaging, Point-of-Care Systems, Ultrasonography methods
- Abstract
Outpatient diagnosis of acute bacterial sinusitis, using only traditional physical examination and clinical criteria, results in the overuse of antibiotics in patients with upper respiratory complaints. Point-of-care maxillary sinus ultrasound is easy to learn and quick to perform in a primary care clinic. The technique can reduce antibiotic prescribing by reassuring both patients and providers of the absence of fluid in the sinus, the hallmark of maxillary sinusitis. A review of the literature, description of technique, and results of sinus ultrasound implementation in a large internal medicine clinic are included.
- Published
- 2018
- Full Text
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40. Genomic and Proteomic Resolution of Heterochromatin and Its Restriction of Alternate Fate Genes.
- Author
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Becker JS, McCarthy RL, Sidoli S, Donahue G, Kaeding KE, He Z, Lin S, Garcia BA, and Zaret KS
- Subjects
- Amyotrophic Lateral Sclerosis genetics, Amyotrophic Lateral Sclerosis metabolism, Amyotrophic Lateral Sclerosis pathology, Cells, Cultured, Chromosomal Proteins, Non-Histone genetics, Chromosome Mapping, Fibroblasts cytology, Fibroblasts metabolism, High-Throughput Nucleotide Sequencing, Histones genetics, Histones metabolism, Humans, Biomarkers analysis, Cellular Reprogramming, Chromosomal Proteins, Non-Histone metabolism, Genomics methods, Heterochromatin genetics, Heterochromatin metabolism, Proteomics methods
- Abstract
Heterochromatin is integral to cell identity maintenance by impeding the activation of genes for alternate cell fates. Heterochromatic regions are associated with histone 3 lysine 9 trimethylation (H3K9me3) or H3K27me3, but these modifications are also found in euchromatic regions that permit transcription. We discovered that resistance to sonication is a reliable indicator of the heterochromatin state, and we developed a biophysical method (gradient-seq) to discriminate subtypes of H3K9me3 and H3K27me3 domains in sonication-resistant heterochromatin (srHC) versus euchromatin. These classifications are more accurate than the histone marks alone in predicting transcriptional silence and resistance of alternate fate genes to activation during direct cell conversion. Our proteomics of H3K9me3-marked srHC and functional screens revealed diverse proteins, including RBMX and RBMXL1, that impede gene induction during cellular reprogramming. Isolation of srHC with gradient-seq provides a genome-wide map of chromatin structure, elucidating subtypes of repressed domains that are uniquely predictive of diverse other chromatin properties., (Copyright © 2017 Elsevier Inc. All rights reserved.)
- Published
- 2017
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41. Mitotic transcription and waves of gene reactivation during mitotic exit.
- Author
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Palozola KC, Donahue G, Liu H, Grant GR, Becker JS, Cote A, Yu H, Raj A, and Zaret KS
- Subjects
- Cell Line, Tumor, Fluorescein-5-isothiocyanate chemistry, Humans, In Situ Hybridization, Fluorescence, Interphase genetics, RNA, Messenger analysis, RNA, Messenger biosynthesis, RNA, Messenger chemistry, Reverse Transcriptase Polymerase Chain Reaction, Staining and Labeling, Uridine Triphosphate chemistry, Mitosis genetics, Transcription, Genetic, Transcriptional Activation
- Abstract
Although the genome is generally thought to be transcriptionally silent during mitosis, technical limitations have prevented sensitive mapping of transcription during mitosis and mitotic exit. Thus, the means by which the interphase expression pattern is transduced to daughter cells have been unclear. We used 5-ethynyluridine to pulse-label transcripts during mitosis and mitotic exit and found that many genes exhibit transcription during mitosis, as confirmed with fluorescein isothiocyanate-uridine 5'-triphosphate labeling, RNA fluorescence in situ hybridization, and quantitative reverse transcription polymerase chain reaction. The first round of transcription immediately after mitosis primarily activates genes involved in the growth and rebuilding of daughter cells, rather than cell type-specific functions. We propose that the cell's transcription pattern is largely retained at a low level through mitosis, whereas the amplitude of transcription observed in interphase is reestablished during mitotic exit., (Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.)
- Published
- 2017
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42. Laser ablation ICP-MS: Application in biomedical research.
- Author
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Sussulini A, Becker JS, and Becker JS
- Subjects
- Animals, Biomedical Research methods, Brain Chemistry, Humans, Laser Therapy, Mass Spectrometry instrumentation, Metals analysis, Molecular Imaging methods, Proteomics methods, Brain Diseases diagnostic imaging, Contrast Media analysis, Mass Spectrometry methods
- Abstract
In the last decade, the development of diverse bioanalytical methodologies based on mass spectrometry imaging has increased, as has their application in biomedical questions. The distribution analysis of elements (metals, semimetals, and non-metals) in biological samples is a point of interest in life sciences, especially within the context of metallomics, which is the scientific field that encompasses the global analysis of the entirety of elemental species inside a cell or tissue. Laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) has been efficiently employed to generate qualitative and quantitative maps of elemental distribution in thin tissue sections of a variety of biological samples, for example, brain, cartilage, spinal cord, etc. The combination of elemental with molecular mass spectrometry allows obtaining information about the elements bound to proteins, when they are previously separated by gel electrophoresis (metalloproteomics), and also adding a new dimension to molecular mass spectrometry imaging by the correlation of molecular and elemental distribution maps in definite regions in a biological tissue. In the present review, recent biomedical applications in LA-ICP-MS imaging as a stand-alone technique and in combination with molecular mass spectrometry imaging techniques are discussed. Applications of LA-ICP-MS in the study of neurodegenerative diseases, distribution of contrast agents and metallodrugs, and metalloproteomics will be focused in this review. © 2015 Wiley Periodicals, Inc. Mass Spec Rev 36:47-57, 2017., (© 2015 Wiley Periodicals, Inc.)
- Published
- 2017
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43. Behavioral Response in the Immediate Aftermath of Shaking: Earthquakes in Christchurch and Wellington, New Zealand, and Hitachi, Japan.
- Author
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Jon I, Lindell MK, Prater CS, Huang SK, Wu HC, Johnston DM, Becker JS, Shiroshita H, Doyle EE, Potter SH, McClure J, and Lambie E
- Subjects
- Adult, Aged, Aged, 80 and over, Female, Humans, Japan, Male, Middle Aged, New Zealand, Socioeconomic Factors, Time Factors, Disasters, Earthquakes, Risk-Taking, Survivors psychology
- Abstract
This study examines people's response actions in the first 30 min after shaking stopped following earthquakes in Christchurch and Wellington, New Zealand, and Hitachi, Japan. Data collected from 257 respondents in Christchurch, 332 respondents in Hitachi, and 204 respondents in Wellington revealed notable similarities in some response actions immediately after the shaking stopped. In all four events, people were most likely to contact family members and seek additional information about the situation. However, there were notable differences among events in the frequency of resuming previous activities. Actions taken in the first 30 min were weakly related to: demographic variables, earthquake experience, contextual variables, and actions taken during the shaking, but were significantly related to perceived shaking intensity, risk perception and affective responses to the shaking, and damage/infrastructure disruption. These results have important implications for future research and practice because they identify promising avenues for emergency managers to communicate seismic risks and appropriate responses to risk area populations., Competing Interests: The authors declare no conflict of interest.
- Published
- 2016
- Full Text
- View/download PDF
44. Immediate behavioural responses to earthquakes in Christchurch, New Zealand, and Hitachi, Japan.
- Author
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Lindell MK, Prater CS, Wu HC, Huang SK, Johnston DM, Becker JS, and Shiroshita H
- Subjects
- Adult, Aged, Emotions, Female, Humans, Japan, Male, Middle Aged, New Zealand, Risk Assessment, Surveys and Questionnaires, Time Factors, Behavior, Cities, Disasters, Earthquakes
- Abstract
This study examines people's immediate responses to earthquakes in Christchurch, New Zealand, and Hitachi, Japan. Data collected from 257 respondents in Christchurch and 332 respondents in Hitachi revealed notable similarities between the two cities in people's emotional reactions, risk perceptions, and immediate protective actions during the events. Respondents' physical, household, and social contexts were quite similar, but Hitachi residents reported somewhat higher levels of emotional reaction and risk perception than did Christchurch residents. Contrary to the recommendations of emergency officials, the most frequent response of residents in both cities was to freeze. Christchurch residents were more likely than Hitachi residents to drop to the ground and take cover, whereas Hitachi residents were more likely than Christchurch residents to evacuate immediately the building in which they were situated. There were relatively small correlations between immediate behavioural responses and demographic characteristics, earthquake experience, and physical, social, or household context., (© 2016 The Author(s). Disasters © Overseas Development Institute, 2016.)
- Published
- 2016
- Full Text
- View/download PDF
45. H3K9me3-Dependent Heterochromatin: Barrier to Cell Fate Changes.
- Author
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Becker JS, Nicetto D, and Zaret KS
- Subjects
- Animals, Cell Differentiation, Epigenesis, Genetic, Gene Expression Regulation, Developmental, Heterochromatin genetics, Humans, Pluripotent Stem Cells physiology, Transcription Factors metabolism, Cellular Reprogramming, Gene Silencing, Heterochromatin metabolism, Histones metabolism
- Abstract
Establishing and maintaining cell identity depends on the proper regulation of gene expression, as specified by transcription factors and reinforced by epigenetic mechanisms. Among the epigenetic mechanisms, heterochromatin formation is crucial for the preservation of genome stability and the cell type-specific silencing of genes. The heterochromatin-associated histone mark H3K9me3, although traditionally associated with the noncoding portions of the genome, has emerged as a key player in repressing lineage-inappropriate genes and shielding them from activation by transcription factors. Here we describe the role of H3K9me3 heterochromatin in impeding the reprogramming of cell identity and the mechanisms by which H3K9me3 is reorganized during development and cell fate determination., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
46. A Primer for Nurses on Perinatal/Neonatal Stroke.
- Author
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Becker JS
- Subjects
- Female, Humans, Infant, Newborn, Pregnancy, Perinatal Mortality, Stroke diagnosis, Stroke pathology, Stroke therapy
- Abstract
Perinatal or neonatal stroke is not uncommon, but diagnosis is often missed. Perinatal nurses are often the first health professionals in the position to observe the most typical symptom of stroke in a newborn, which is focal seizure. Etiology, symptoms and outcomes are reviewed and discussed through the context of the author's personal story., (© 2015 AWHONN.)
- Published
- 2015
- Full Text
- View/download PDF
47. Application of laser microdissection ICP-MS for high resolution elemental mapping in mouse brain tissue: a comparative study with laser ablation ICP-MS.
- Author
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Sussulini A and Becker JS
- Subjects
- Animals, Brain Chemistry, Brain Mapping instrumentation, Hippocampus ultrastructure, Iron analysis, Laser Capture Microdissection instrumentation, Laser Therapy instrumentation, Magnesium analysis, Mice, Phosphorus analysis, Potassium analysis, Spectrophotometry, Atomic instrumentation, Substantia Nigra ultrastructure, Uranium analysis, Zinc analysis, Brain Mapping methods, Hippocampus chemistry, Laser Capture Microdissection methods, Laser Therapy methods, Spectrophotometry, Atomic methods, Substantia Nigra chemistry
- Abstract
Mapping of elements in biological tissue by laser induced mass spectrometry is a fast growing analytical methodology in life sciences. This method provides a multitude of useful information of metal, nonmetal, metalloid and isotopic distribution at major, minor and trace concentration ranges, usually with a lateral resolution of 12-160 µm. Selected applications in medical research require an improved lateral resolution of laser induced mass spectrometric technique at the low micrometre scale and below. The present work demonstrates the applicability of a recently developed analytical methodology - laser microdissection associated to inductively coupled plasma mass spectrometry (LMD ICP-MS) - to obtain elemental images of different solid biological samples at high lateral resolution. LMD ICP-MS images of mouse brain tissue samples stained with uranium and native are shown, and a direct comparison of LMD and laser ablation (LA) ICP-MS imaging methodologies, in terms of elemental quantification, is performed., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2015
- Full Text
- View/download PDF
48. Measuring Metals in Complex Biological Systems
- Author
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Matusch A, Oros-Peusquens AM, Becker JS, Nriagu JO, and Skaar EP
- Abstract
This chapter presents a conceptual overview of techniques for element imaging in biological specimens. Mass spectrometric techniques, particle and photon-induced X-ray emission techniques as well as X-ray and electron absorption techniques are described. In addition, it discusses frequent methodological issues common to elemental bioimaging in all of these techniques. These concern differential leaching of analyte species from distinct biological structures in contact with water and the use of reference parameters correcting for nonhomogeneous material density and nonhomogeneous instrument sensitivity. The use of 3D atlases of element concentrations for hypothesis generation is exemplified by manganese in the rat brain. The data reported in this chapter were acquired from healthy tissue and illustrate the potential of measurement methods, which can have a major impact in clarifying the role of heavy metals in infectious disease. The examples described have been selected from among various applications of element imaging and may indirectly help infection biologists choose appropriate analytical strategies for their experiments., (© 2015 Massachusetts Institute of Technology and the Frankfurt Institute for Advanced Studies.)
- Published
- 2015
49. Bioimaging mass spectrometry of trace elements - recent advance and applications of LA-ICP-MS: A review.
- Author
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Becker JS, Matusch A, and Wu B
- Subjects
- Animals, Humans, Laser Therapy methods, Mass Spectrometry methods, Spectrophotometry, Atomic methods, Trace Elements analysis
- Abstract
Bioimaging using laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) offers the capability to quantify trace elements and isotopes within tissue sections with a spatial resolution ranging about 10-100 μm. Distribution analysis adds to clarifying basic questions of biomedical research and enables bioaccumulation and bioavailability studies for ecological and toxicological risk assessment in humans, animals and plants. Major application fields of mass spectrometry imaging (MSI) and metallomics have been in brain and cancer research, animal model validation, drug development and plant science. Here we give an overview of latest achievements in methods and applications. Recent improvements in ablation systems, operation and cell design enabled progressively better spatial resolutions down to 1 μm. Meanwhile, a body of research has accumulated covering basic principles of the element architecture in animals and plants that could consistently be reproduced by several laboratories such as the distribution of Fe, Cu, Zn in rodent brain. Several studies investigated the distribution and delivery of metallo-drugs in animals. Hyper-accumulating plants and pollution indicator organisms have been the key topics in environmental science. Increasingly, larger series of samples are analyzed, may it be in the frame of comparisons between intervention and control groups, of time kinetics or of three-dimensional atlas approaches., (Copyright © 2014 Elsevier B.V. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
50. Salient beliefs about earthquake hazards and household preparedness.
- Author
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Becker JS, Paton D, Johnston DM, and Ronan KR
- Subjects
- Attitude, Choice Behavior, Cities, Communication, Family Characteristics, Geography, Humans, New Zealand, Risk Assessment methods, Risk Management methods, Social Behavior, Surveys and Questionnaires, Urban Population, Culture, Disaster Planning methods, Earthquakes, Perception
- Abstract
Prior research has found little or no direct link between beliefs about earthquake risk and household preparedness. Furthermore, only limited work has been conducted on how people's beliefs influence the nature and number of preparedness measures adopted. To address this gap, 48 qualitative interviews were undertaken with residents in three urban locations in New Zealand subject to seismic risk. The study aimed to identify the diverse hazard and preparedness-related beliefs people hold and to articulate how these are influenced by public education to encourage preparedness. The study also explored how beliefs and competencies at personal, social, and environmental levels interact to influence people's risk management choices. Three main categories of beliefs were found: hazard beliefs; preparedness beliefs; and personal beliefs. Several salient beliefs found previously to influence the preparedness process were confirmed by this study, including beliefs related to earthquakes being an inevitable and imminent threat, self-efficacy, outcome expectancy, personal responsibility, responsibility for others, and beliefs related to denial, fatalism, normalization bias, and optimistic bias. New salient beliefs were also identified (e.g., preparedness being a "way of life"), as well as insight into how some of these beliefs interact within the wider informational and societal context., (© 2013 Society for Risk Analysis.)
- Published
- 2013
- Full Text
- View/download PDF
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