101 results on '"Beis D"'
Search Results
2. Tbx5 navigates through the labyrinth of adult cardiac regeneration
- Author
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Siatra, P, primary, Hatzianastasiou, N, additional, Vatsellas, G, additional, Manolakou, T, additional, Papapetropoulos, A, additional, Balafas, E, additional, Ruchaya, P J, additional, Kostomitsopoulos, N G, additional, Mouchtouri, E, additional, Mavroidis, M, additional, Thanos, D, additional, Yashiro, K, additional, Beis, D, additional, and Kokkinopoulos, I, additional
- Published
- 2021
- Full Text
- View/download PDF
3. From proteomic mapping to invasion‐metastasis‐cascade systemic biomarkering and targeted drugging of mutant braf‐dependent human cutaneous melanomagenesis
- Author
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Giannopoulou, A.F. Velentzas, A.D. Anagnostopoulos, A.K. Agalou, A. Papandreou, N.C. Katarachia, S.A. Koumoundourou, D.G. Konstantakou, E.G. Pantazopoulou, V.I. Delis, A. Michailidi, M.T. Valakos, D. Chatzopoulos, D. Syntichaki, P. Iconomidou, V.A. Tsitsilonis, O.E. Papassideri, I.S. Voutsinas, G.E. Hatzopoulos, P. Thanos, D. Beis, D. Anastasiadou, E. Tsangaris, G.Th. Stravopodis, D.J.
- Abstract
Melanoma is classified among the most notoriously aggressive human cancers. Despite the recent progress, due to its propensity for metastasis and resistance to therapy, novel biomarkers and oncogenic molecular drivers need to be promptly identified for metastatic melanoma. Hence, by employing nano liquid chromatography‐tandem mass spectrometry deep proteomics technology, advanced bioinformatics algorithms, immunofluorescence, western blotting, wound healing protocols, molecular modeling programs, and MTT assays, we comparatively examined the respective proteomic contents of WM115 primary (n = 3955 proteins) and WM266‐4 metastatic (n = 6681 proteins) melanoma cells. It proved that WM115 and WM266‐4 cells have engaged hybrid epithelialto‐mesenchymal transition/mesenchymal‐to‐epithelial transition states, with TGF‐β controlling their motility in vitro. They are characterized by different signatures of SOX‐dependent neural crestlike stemness and distinct architectures of the cytoskeleton network. Multiple signaling pathways have already been activated from the primary melanoma stage, whereas HIF1α, the major hypoxiainducible factor, can be exclusively observed in metastatic melanoma cells. Invasion‐metastasis cascade‐specific sub‐routines of activated Caspase‐3‐triggered apoptosis and LC3B‐II‐dependent constitutive autophagy were also unveiled. Importantly, WM115 and WM266‐4 cells exhibited diverse drug response profiles, with epirubicin holding considerable promise as a beneficial drug for metastatic melanoma clinical management. It is the proteome navigation that enables systemic biomarkering and targeted drugging to open new therapeutic windows for advanced disease. © 2021 by the authors. Licensee MDPI, Basel, Switzerland.
- Published
- 2021
4. Generation and characterization of a CRISPR/Cas9-induced 3-mst deficient zebrafish
- Author
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Katsouda, A. Peleli, M. Asimakopoulou, A. Papapetropoulos, A. Beis, D.
- Subjects
human activities - Abstract
3-mercaptopyruvate sulfurtransferase (3-MST) is an enzyme capable of synthesizing hydrogen sulfide (H2S) and polysulfides. In spite of its ubiquitous presence in mammalian cells, very few studies have investigated its contribution to homeostasis and disease development, thus the role of 3-MST remains largely unexplored. Here, we present a clustered, regularly interspaced, short palindromic repeats (CRISPR)/CRISPR–associated protein-9 (Cas9) induced 3-mst mutant zebrafish line, which will allow the study of 3-MST’s role in several biological processes. The 3-mst zebrafish orthologue was identified using a bioinformatic approach and verified by its ability to produce H2S in the presence of 3-mercaptopyruvate (3-MP). Its expression pattern was analyzed during zebrafish early development, indicating predominantly an expression in the heart and central nervous system. As expected, no detectable levels of 3-Mst protein were observed in homozygous mutant larvae. In line with this, H2S levels were reduced in 3-mst−/− zebrafish. Although the mutants showed no obvious morphological deficiencies, they exhibited increased lethality under oxidative stress conditions. The elevated levels of reactive oxygen species, detected following 3-mst deletion, are likely to drive this phenotype. In line with the increased ROS, we observed accelerated fin regenerative capacity in 3-mst deficient zebrafish. Overall, we provide evidence for the expression of 3-mst in zebrafish, confirm its important role in redox homeostasis and indicate the enzyme’s possible involvement in the regeneration processes. © 2020 by the authors. Licensee MDPI, Basel, Switzerland.
- Published
- 2020
5. Ventricular remodeling of single-chambered myh6 −/− adult zebrafish hearts occurs via a hyperplastic response and is accompanied by elastin deposition in the atrium
- Author
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Sarantis, P. Gaitanaki, C. Beis, D.
- Subjects
cardiovascular system - Abstract
Zebrafish (Danio rerio) is widely used as an animal model to understand the pathophysiology of cardiovascular diseases. Here, we present the adult cardiac phenotype of weak atrium, myh6−/−, which carry mutations in the zebrafish atrial myosin heavy chain. Homozygous mutants survive to adulthood and are fertile despite their initial weak atrial beat. In adult mutants, the atrium remains hypoplastic and shows elastin deposition while mutant ventricles exhibit increased size. In mammals, hypertrophy is the most common mechanism resulting in cardiomegaly. Using immunohistochemistry and confocal microscopy to measure cardiomyocyte cell size, density and proliferation, we show that the enlargement of the myh6−/− ventricle is predominantly due to hyperplasia. However, we identified similar transcriptional profiles to the mammalian hypertrophy response via RT-PCR of the hyperplastic ventricles. Furthermore, we show activation of the ER-stress pathway by western blot analysis. In conclusion, we can assume, based on our model, that molecular signaling pathways associated with hypertrophy in mammals, in combination with ER-stress activation, result in hyperplasia in zebrafish. In addition, to our knowledge, this is the first time to report elastin deposition in the atrium. © 2019, Springer-Verlag GmbH Germany, part of Springer Nature.
- Published
- 2019
6. Catalyzing transcriptomics research in cardiovascular disease:the CardioRNA COST Action CA17129
- Author
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Gomes, C. P. (Clarissa Pedrosa da Costa), Agg, B. (Bence), Andova, A. (Andrejaana), Arslan, S. (Serdal), Baker, A. (Andrew), Bartekova, M. (Monika), Beis, D. (Dimitris), Betsou, F. (Fay), Wettinger, S. B. (Stephanie Bezzina), Bugarski, B. (Branko), Condorelli, G. (Gianluigi), da Silva, G. J. (Gustavo Jose Justo), Danilin, S. (Sabrina), de Gonzalo-Calvo, D. (David), Buil, A. (Alfonso), Carmo-Fonseca, M. (Maria), Enguita, F. J. (Francisco J.), Felekkis, K. (Kyriacos), Ferdinandy, P. (Peter), Gyoengyoesi, M. (Mariann), Hackl, M. (Matthias), Karaduzovic-Hadziabdic, K. (Kanita), Hellemans, J. (Jan), Heymans, S. (Stephane), Hlavackova, M. (Marketa), Hoydal, M. A. (Morten Andre), Jankovic, A. (Aleksandra), Jusic, A. (Amela), Kardassis, D. (Dimitris), Kerkela, R. (Risto), Kuster, G. M. (Gabriela M.), Lakkisto, P. (Paivi), Leszek, P. (Przemyslaw), Lustrek, M. (Mitja), Maegdefessel, L. (Lars), Martelli, F. (Fabio), Novella, S. (Susana), O'Brien, T. (Timothy), Papaneophytou, C. (Christos), Pedrazzini, T. (Thierry), Pinet, F. (Florence), Popescu, O. (Octavian), Potocnjak, I. (Ines), Robinson, E. (Emma), Sasson, S. (Shlomo), Scholz, M. (Markus), Simionescu, M. (Maya), Stoll, M. (Monika), Varga, Z. V. (Zoltan V.), Vinciguerra, M. (Manlio), Xuereb, A. (Angela), Yilmaz, M. B. (Mehmet Birhan), Emanueli, C. (Costanza), Devaux, Y. (Yvan), Gomes, C. P. (Clarissa Pedrosa da Costa), Agg, B. (Bence), Andova, A. (Andrejaana), Arslan, S. (Serdal), Baker, A. (Andrew), Bartekova, M. (Monika), Beis, D. (Dimitris), Betsou, F. (Fay), Wettinger, S. B. (Stephanie Bezzina), Bugarski, B. (Branko), Condorelli, G. (Gianluigi), da Silva, G. J. (Gustavo Jose Justo), Danilin, S. (Sabrina), de Gonzalo-Calvo, D. (David), Buil, A. (Alfonso), Carmo-Fonseca, M. (Maria), Enguita, F. J. (Francisco J.), Felekkis, K. (Kyriacos), Ferdinandy, P. (Peter), Gyoengyoesi, M. (Mariann), Hackl, M. (Matthias), Karaduzovic-Hadziabdic, K. (Kanita), Hellemans, J. (Jan), Heymans, S. (Stephane), Hlavackova, M. (Marketa), Hoydal, M. A. (Morten Andre), Jankovic, A. (Aleksandra), Jusic, A. (Amela), Kardassis, D. (Dimitris), Kerkela, R. (Risto), Kuster, G. M. (Gabriela M.), Lakkisto, P. (Paivi), Leszek, P. (Przemyslaw), Lustrek, M. (Mitja), Maegdefessel, L. (Lars), Martelli, F. (Fabio), Novella, S. (Susana), O'Brien, T. (Timothy), Papaneophytou, C. (Christos), Pedrazzini, T. (Thierry), Pinet, F. (Florence), Popescu, O. (Octavian), Potocnjak, I. (Ines), Robinson, E. (Emma), Sasson, S. (Shlomo), Scholz, M. (Markus), Simionescu, M. (Maya), Stoll, M. (Monika), Varga, Z. V. (Zoltan V.), Vinciguerra, M. (Manlio), Xuereb, A. (Angela), Yilmaz, M. B. (Mehmet Birhan), Emanueli, C. (Costanza), and Devaux, Y. (Yvan)
- Abstract
Cardiovascular disease (CVD) remains the leading cause of death worldwide and, despite continuous advances, better diagnostic and prognostic tools, as well as therapy, are needed. The human transcriptome, which is the set of all RNA produced in a cell, is much more complex than previously thought and the lack of dialogue between researchers and industrials and consensus on guidelines to generate data make it harder to compare and reproduce results. This European Cooperation in Science and Technology (COST) Action aims to accelerate the understanding of transcriptomics in CVD and further the translation of experimental data into usable applications to improve personalized medicine in this field by creating an interdisciplinary network. It aims to provide opportunities for collaboration between stakeholders from complementary backgrounds, allowing the functions of different RNAs and their interactions to be more rapidly deciphered in the cardiovascular context for translation into the clinic, thus fostering personalized medicine and meeting a current public health challenge. Thus, this Action will advance studies on cardiovascular transcriptomics, generate innovative projects, and consolidate the leadership of European research groups in the field. COST (European Cooperation in Science and Technology) is a funding organization for research and innovation networks (www.cost.eu).
- Published
- 2019
7. Assessment of the Acute Toxicity, Uptake and Biotransformation Potential of Benzotriazoles in Zebrafish (Danio rerio) Larvae Combining HILIC- with RPLC-HRMS for High-Throughput Identification
- Author
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Damalas, D.E. Bletsou, A.A. Agalou, A. Beis, D. Thomaidis, N.S.
- Abstract
The current study reports on the toxicity, uptake, and biotransformation potential of zebrafish (embryos and larvae) exposed to benzotriazoles (BTs). Acute toxicity assays were conducted. Cardiac function abnormalities (pericardial edema and poor blood circulation) were observed from the phenotypic analysis of early life zebrafish embryos after BTs exposure. For the uptake and biotransformation experiment, extracts of whole body larvae were analyzed using liquid chromatography-high-resolution tandem mass spectrometry (UPLC-Q-TOF-HRMS/MS). The utility of hydrophilic interaction liquid chromatography (HILIC) as complementary technique to reversed phase liquid chromatography (RPLC) in the identification process was investigated. Through HILIC analyses, additional biotransformation products (bio-TPs) were detected, because of the enhanced sensitivity and better separation efficiency of isomers. Therefore, reduction of false negative results was accomplished. Both oxidative (hydroxylation) and conjugative (glucuronidation, sulfation) metabolic reactions were observed, while direct sulfation proved the dominant biotransformation pathway. Overall, 26 bio-TPs were identified through suspect and nontarget screening workflows, 22 of them reported for the first time. 4-Methyl-1-H-benzotriazole (4-MeBT) demonstrated the highest toxicity potential and was more extensively biotransformed, compared to 1-H-benzotriazole (BT) and 5-methyl-1-H-benzotriazole (5-MeBT). The extent of biotransformation proved particularly informative in the current study, to explain and better understand the different toxicity potentials of BTs. © 2018 American Chemical Society.
- Published
- 2018
8. Identification of novel melanin synthesis inhibitors from Crataegus pycnoloba using an in vivo zebrafish phenotypic assay
- Author
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Agalou, A. Thrapsianiotis, M. Angelis, A. Papakyriakou, A. Skaltsounis, A.-L. Aligiannis, N. Beis, D.
- Abstract
Zebrafish has emerged as a powerful model organism for high throughput drug screening. Several morphological criteria, transgenic lines and in situ expression screens have been developed to identify novel bioactive compounds and their mechanism of action. Here, we used the inhibition of melanogenesis during early zebrafish embryo development to identify natural compounds that block melanogenesis. We identified an extract from the Greek hawthorn Crataegus pycnoloba as a potent inhibitor of melanin synthesis and used activity based subfractionation to identify active subfractions and eventually three single compounds of the same family (dibenzofurans). These compounds show reversible inhibition of melanin synthesis and do not act via inhibition of tyrosinase. We also showed that they do not interfere with neural crest differentiation or migration. We identified via in silico modeling that the compounds can bind to the aryl hydrocarbon receptor (AHR) and verified activation of the Ahr signaling pathway showing the induction of the expression of target genes. © 2018 Agalou, Thrapsianiotis, Angelis, Papakyriakou, Skaltsounis, Aligiannis and Beis.
- Published
- 2018
9. Anti-melanogenic properties of Greek plants. A novel depigmenting agent from morus alba wood
- Author
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Chaita, E. Lambrinidis, G. Cheimonidi, C. Agalou, A. Beis, D. Trougakos, I. Mikros, E. Skaltsounis, A.-L. Aligiannis, N. Ferreira, I.C.F.R.
- Abstract
In therapeutic interventions associated with melanin hyperpigmentation, tyrosinase is regarded as a target enzyme as it catalyzes the rate-limiting steps in mammalian melanogenesis. Since many known agents have been proven to be toxic, there has been increasing impetus to identify alternative tyrosinase inhibitors, especially from natural sources. In this study, we investigated 900 extracts from Greek plants for potential tyrosinase inhibitive properties. Among the five most potent extracts, the methanol extract of Morus alba wood (MAM) demonstrated a significant reduction in intracellular tyrosinase and melanin content in B16F10 melanoma cells. Bioassay-guided isolation led to the acquisition of twelve compounds: oxyresveratrol (1), kuwanon C (2), mulberroside A (3), resorcinol (4), dihydrooxyresveratol (5), trans-dihydromorin (6), 2,4,3′-trihydroxydihydrostilbene (7), kuwanon H (8), 2,4-dihydroxybenzaldehyde (9), morusin (10), moracin M (11) and kuwanon G (12). Among these, 2,4,3′-trihydroxydihydrostilbene (7) is isolated for the first time from Morus alba and constitutes a novel potent tyrosinase inhibitor (IC50 0.8 ± 0.15). We report here for the first time dihydrooxyresveratrol (5) as a potent natural tyrosinase inhibitor (IC50 0.3 ± 0.05). Computational docking analysis indicated the binding modes of six tyrosinase inhibitors with the aminoacids of the active centre of tyrosinase. Finally, we found both MAM extract and compounds 1, 6 and 7 to significantly suppress in vivo melanogenesis during zebrafish embryogenesis. © 2017 by the authors.
- Published
- 2017
10. Zebrafish models of cardiovascular disease
- Author
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Bournele, D. Beis, D.
- Abstract
Cardiovascular disease (CVD) is one of the leading causes of death worldwide. The most significant risk factors associated with the development of heart diseases include genetic and environmental factors such as hypertension, high blood cholesterol levels, diabetes, smoking, and obesity. Coronary artery disease accounts for the highest percentage of CVD deaths and stroke, cardiomyopathies, congenital heart diseases, heart valve defects and arrhythmias follow. The causes, prevention, and treatment of all forms of cardiovascular disease remain active fields of biomedical research, with hundreds of scientific studies published on a weekly basis. Generating animal models of cardiovascular diseases is the main approach used to understand the mechanism of pathogenesis and also design and test novel therapies. Here, we will focus on recent advances to finding the genetic cause and the molecular mechanisms of CVDs as well as novel drugs to treat them, using a small tropical freshwater fish native to Southeast Asia: the zebrafish (Danio rerio). Zebrafish emerged as a high-throughput but low-cost model organism that combines the advantages of forward and reverse genetics with phenotype-driven drug screenings. Noninvasive imaging allows in vivo analyses of cardiovascular phenotypes. Functional verification of candidate genes from genome-wide association studies has verified the role of several genes in the pathophysiology of CVDs. Also, zebrafish hearts maintain their ability to regenerate throughout their lifetime, providing novel insights to understand human cardiac regeneration. © 2016, Springer Science+Business Media New York.
- Published
- 2016
11. Correction to ‘Brain serotonin deficiency leads to social communication deficits in mice’
- Author
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Beis, D., primary, Holzwarth, K., additional, Flinders, M., additional, Mosienko, V., additional, Bader, M., additional, Wöhr, M., additional, and Alenina, N., additional
- Published
- 2016
- Full Text
- View/download PDF
12. Brain serotonin deficiency leads to social communication deficits in mice
- Author
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Beis, D., primary, Holzwarth, K., additional, Flinders, M., additional, Bader, M., additional, Wöhr, M., additional, and Alenina, N., additional
- Published
- 2015
- Full Text
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13. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche
- Author
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Aida, M., Beis, D., Heidstra, R., Willemsen, V.A., Blilou, I., Reis Galinha, C.I., Nussaume, L., Noh, Y.-S., Amasino, R., Scheres, B.J.G., Pattern and polarity in Arabidopsis root development, Universiteit Utrecht, and Dep Biologie
- Subjects
Biologie/Milieukunde (BIOL) ,International (English) ,Life sciences - Published
- 2004
14. In vivo Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains
- Author
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Moro, E., Ozhan-Kizil, G., Mongera, A., Beis, D., Wierzbicki, C., Young, R., Bournele, D., Domenichini, Alice, Valdivia, L., Lum, L., Chen, C., Amatruda, J., Tiso, N., Weidinger, G., Argenton, F., Moro, E., Ozhan-Kizil, G., Mongera, A., Beis, D., Wierzbicki, C., Young, R., Bournele, D., Domenichini, Alice, Valdivia, L., Lum, L., Chen, C., Amatruda, J., Tiso, N., Weidinger, G., and Argenton, F.
- Abstract
The creation of molecular tools able to unravel in vivo spatiotemporal activation of specific cell signaling events during cell migration, differentiation and morphogenesis is of great relevance to developmental cell biology. Here, we describe the generation, validation and applications of two transgenic reporter lines for Wnt/?-catenin signaling, named TCFsiam, and show that they are reliable and sensitive Wnt biosensors for in vivo studies. We demonstrate that these lines sensitively detect Wnt/?-catenin pathway activity in several cellular contexts, from sensory organs to cardiac valve patterning. We provide evidence that Wnt/?-catenin activity is involved in the formation and maintenance of the zebrafish CNS blood vessel network, on which sox10 neural crest-derived cells migrate and proliferate. We finally show that these transgenic lines allow for screening of Wnt signaling modifying compounds, tissue regeneration assessment as well as evaluation of potential Wnt/?-catenin genetic modulators. © 2012 Elsevier Inc.
- Published
- 2012
15. An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root
- Author
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Sabatini, S., Beis, D., Wolkenfelt, H.T.M., Murfett, J., Guilfoyle, T., Malamy, J., Benfey, P.N., Leyser, O., Bechtold, N., Weisbeek, P.J., Scheres, B.J.G., Molecular Genetics, Universiteit Utrecht, and Dep Biologie
- Subjects
Cell biology ,Molecular biology ,International ,Genetics ,Life sciences - Published
- 1999
16. The ELEKTRA project : Enterprise Knowledge Modelling for change in the distribution unit of Public Power Corporation
- Author
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Loucopoulos, Pericles, Kavakli, V, Prekas, N, Dimitromanolaki, I, Yilmazturk, N, Rolland, Colette, Grosz, Georges, Nurcan, Selmin, Beis, D, Vgontzas, G, Centre de Recherche en Informatique de Paris 1 (CRI), and Université Paris 1 Panthéon-Sorbonne (UP1)
- Subjects
[INFO.INFO-OH]Computer Science [cs]/Other [cs.OH] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 1998
17. The inclement mouse: central serotonin deficiency and the implications
- Author
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Beis, D, primary, Holzwarth, K, additional, Mosienko, V, additional, Schweppe, C, additional, Bader, M, additional, Wöhr, M, additional, and Alenina, N, additional
- Published
- 2013
- Full Text
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18. Serotonin Is Required for Exercise-Induced Adult Hippocampal Neurogenesis
- Author
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Klempin, F., primary, Beis, D., additional, Mosienko, V., additional, Kempermann, G., additional, Bader, M., additional, and Alenina, N., additional
- Published
- 2013
- Full Text
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19. PLATO Helps Athens Win Gold:Olympic Games Knowledge Modeling for Organizational Change and Resource Management
- Author
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Beis, D. A., Loucopoulos, P., Pyrgiotis, Y., Zografos, Konstantinos, Beis, D. A., Loucopoulos, P., Pyrgiotis, Y., and Zografos, Konstantinos
- Abstract
Planning, designing, and implementing systems to support venue operations at the Olympic Games is complicated. The organizing committees must create designs that result in reliable, high-quality venue operations at reasonable cost. The organizational backdrop is unique. The organizing committee has a limited lifetime, it has no organizational memory, any learning disappears with its dissolution, and during its lifetime it must change rapidly from a function-oriented entity to a process-oriented one. The Athens 2004 Olympic Games Organizing Committee (ATHOC) used innovative techniques from management science, systems engineering, and information technology to change the planning, design, and operation of venues. We developed the Process Logistics Advanced Technical Optimization (PLATO) approach for the games. In the PLATO project, we developed a systematic process for planning and designing venue operations by using knowledge modeling and resource-management techniques and tools. We developed a rich library of models that is directly transferable to future Olympic organizing committees and other sports-oriented events. The direct financial benefit to ATHOC was the reduction of the costs of managing venue operations by over $69.7 million. The success of the games raised Greece’s international profile in terms of capabilities in managing large and complex projects which, in the medium to long term, will yield financial, political, and social benefits. Internationally, the PLATO legacy of its Olympics knowledge base will enable future organizers of large-scale events to reuse and customize the knowledge to gain benefits and reduce the financial burdens on governments and society.
- Published
- 2006
20. Jejunal diverticulosis
- Author
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Sioulas, A. D., Polymeros, D., Beis, D., and Konstantinos Triantafyllou
- Subjects
Image of the Month - Published
- 2013
21. Exaggerated aggression and decreased anxiety in mice deficient in brain serotonin
- Author
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Mosienko, V, primary, Bert, B, additional, Beis, D, additional, Matthes, S, additional, Fink, H, additional, Bader, M, additional, and Alenina, N, additional
- Published
- 2012
- Full Text
- View/download PDF
22. The PLETHORA genes mediate patterning of the Arabidopsis root stem cell niche
- Author
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Pattern and polarity in Arabidopsis root development, Universiteit Utrecht, Dep Biologie, Aida, M., Beis, D., Heidstra, R., Willemsen, V.A., Blilou, I., Reis Galinha, C.I., Nussaume, L., Noh, Y.-S., Amasino, R., Scheres, B.J.G., Pattern and polarity in Arabidopsis root development, Universiteit Utrecht, Dep Biologie, Aida, M., Beis, D., Heidstra, R., Willemsen, V.A., Blilou, I., Reis Galinha, C.I., Nussaume, L., Noh, Y.-S., Amasino, R., and Scheres, B.J.G.
- Published
- 2004
23. An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root
- Author
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Molecular Genetics, Universiteit Utrecht, Dep Biologie, Sabatini, S., Beis, D., Wolkenfelt, H.T.M., Murfett, J., Guilfoyle, T., Malamy, J., Benfey, P.N., Leyser, O., Bechtold, N., Weisbeek, P.J., Scheres, B.J.G., Molecular Genetics, Universiteit Utrecht, Dep Biologie, Sabatini, S., Beis, D., Wolkenfelt, H.T.M., Murfett, J., Guilfoyle, T., Malamy, J., Benfey, P.N., Leyser, O., Bechtold, N., Weisbeek, P.J., and Scheres, B.J.G.
- Published
- 1999
24. Endocardial Cushion Formation in Zebrafish
- Author
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STAINIER, D.Y.R., primary, BEIS, D., additional, JUNGBLUT, B., additional, and BARTMAN, T., additional
- Published
- 2002
- Full Text
- View/download PDF
25. Psychiatric disorders in menopause
- Author
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Pampouchidou Nikoletta, Vasilakos Konstantinos, Tatsi Presveia, Beis Dimitrios, Anthimidis Georgios, Polyzoi Katerina, Didaskalou Thanos, Kalfas Dimitrios, Pavlidis Ioannis, and Tawfik Abdel
- Subjects
Psychiatry ,RC435-571 - Published
- 2006
- Full Text
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26. Depression in outpatients with diabetes mellitus
- Author
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Lazaridou Maria, Tatsi Presveia, Gianniki Triantafillia, Polizoi Katerina, Anthimidis Georgios, Didaskalou Thanos, Kalfas Dimitrios, Vasilakos Konstantinos, Beis Dimitrios, and Tawfik Abdel
- Subjects
Psychiatry ,RC435-571 - Published
- 2006
- Full Text
- View/download PDF
27. A Novel Fluorescent Gemcitabine Prodrug That Follows a Nucleoside Transporter-Independent Internalization and Bears Enhanced Therapeutic Efficacy With Respect to Gemcitabine.
- Author
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Vrettos EΙ, Kyrkou SG, Zoi V, Giannakopoulou M, Chatziathanasiadou MV, Kanaki Z, Agalou A, Bistas VP, Kougioumtzi A, Karampelas T, Diamantis DA, Murphy C, Beis D, Klinakis A, Tamvakopoulos C, Kyritsis AP, Alexiou GA, and Tzakos AG
- Subjects
- Humans, Animals, Mice, Cell Line, Tumor, Endocytosis drug effects, Fluoresceins chemistry, Antineoplastic Agents chemistry, Antineoplastic Agents pharmacology, Nucleoside Transport Proteins metabolism, Drug Liberation, Gemcitabine, Deoxycytidine analogs & derivatives, Deoxycytidine chemistry, Deoxycytidine pharmacology, Prodrugs chemistry, Prodrugs pharmacology, Zebrafish, Fluorescent Dyes chemistry
- Abstract
The multiplexity of cancer has rendered it the second leading cause of mortality worldwide and theragnostic prodrugs have gained popularity in recent years as a means of treatment. Theragnostic prodrugs enable the simultaneous diagnosis and therapy of tumors via high-precision real-time drug release monitoring. Herein, we report the development of the small theragnostic prodrug GF, based on the nucleoside anticancer agent gemcitabine and the fluorescent dye 5(6)-carboxyfluorescein. We have successfully demonstrated its efficient internalization in tumor cells, showing localization throughout both the early and late endocytic pathways. Its mechanism of cell internalization was evaluated, confirming its independence from nucleoside transporters. Its cellular localization via confocal microscopy revealed a clathrin-mediated endocytosis mechanism, distinguishing it from analogous compounds studied previously. Furthermore, GF exhibited stability across various pH values and in human blood plasma. Subsequently, its in vitro cytotoxicity was assessed in three human cancer cell lines (A549, U87 and T98). Additionally, its pharmacokinetic profile in mice was investigated and the consequent drug release was monitored. Finally, its in vivo visualization was accomplished in zebrafish xenotransplantation models and its in vivo efficacy was evaluated in A549 xenografts. The results unveiled an intriguing efficacy profile, positioning GF as a compelling candidate warranting further investigation., (© 2024 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH.)
- Published
- 2024
- Full Text
- View/download PDF
28. Targeting the interaction of pleiotrophin and VEGFA 165 with protein tyrosine phosphatase receptor zeta 1 inhibits endothelial cell activation and angiogenesis.
- Author
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Choleva E, Menounou L, Ntenekou D, Kastana P, Tzoupis Η, Katraki-Pavlou S, Drakopoulou M, Spyropoulos D, Andrikopoulou A, Kanellopoulou V, Enake MK, Beis D, and Papadimitriou E
- Subjects
- Humans, Animals, Chick Embryo, Zebrafish, Protein Binding, Cell Proliferation drug effects, Cell Line, Tumor, Endothelial Cells drug effects, Endothelial Cells metabolism, Neovascularization, Pathologic, Glioblastoma pathology, Glioblastoma metabolism, Glioblastoma drug therapy, Angiogenesis, Vascular Endothelial Growth Factor A metabolism, Vascular Endothelial Growth Factor A pharmacology, Receptor-Like Protein Tyrosine Phosphatases, Class 5 metabolism, Cell Movement drug effects, Cytokines metabolism, Carrier Proteins metabolism, Carrier Proteins pharmacology, Human Umbilical Vein Endothelial Cells drug effects, Neovascularization, Physiologic drug effects
- Abstract
Protein tyrosine phosphatase receptor zeta 1 (PTPRZ1) is a transmembrane tyrosine phosphatase (TP) that serves as a receptor for pleiotrophin (PTN) and vascular endothelial growth factor A 165 (VEGFA
165 ) to regulate endothelial cell migration. In the present work, we identify a PTN peptide fragment (PTN97-110 ) that inhibits the interaction of PTN and VEGFA165 with PTPRZ1 but not VEGF receptor 2. This peptide abolishes the stimulatory effect of PTN and VEGFA165 on endothelial cell migration, tube formation on Matrigel, and Akt activation in vitro. It also partially inhibits VEGFA165 -induced VEGF receptor 2 activation but does not affect ERK1/2 activation and cell proliferation. In vivo, PTN97-110 inhibits or dysregulates angiogenesis in the chick embryo chorioallantoic membrane and the zebrafish assays, respectively. In glioblastoma cells in vitro, PTN97-110 abolishes the stimulatory effect of VEGFA165 on cell migration and inhibits their anchorage-independent growth, suggesting that this peptide might also be exploited in glioblastoma therapy. Finally, in silico and experimental evidence indicates that PTN and VEGFA165 bind to the extracellular fibronectin type-III (FNIII) domain to stimulate cell migration. Collectively, our data highlight novel aspects of the interaction of PTN and VEGFA165 with PTPRZ1, strengthen the notion that PTPRZ1 is required for VEGFA165 -induced signaling, and identify a peptide that targets this interaction and can be exploited for the design of novel anti-angiogenic and anti-glioblastoma therapeutic approaches., Competing Interests: Declaration of competing interest All authors declare no conflict of interest., (Copyright © 2024 The Authors. Published by Elsevier B.V. All rights reserved.)- Published
- 2024
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29. Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment.
- Author
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Kolb J, Tsata V, John N, Kim K, Möckel C, Rosso G, Kurbel V, Parmar A, Sharma G, Karandasheva K, Abuhattum S, Lyraki O, Beck T, Müller P, Schlüßler R, Frischknecht R, Wehner A, Krombholz N, Steigenberger B, Beis D, Takeoka A, Blümcke I, Möllmert S, Singh K, Guck J, Kobow K, and Wehner D
- Subjects
- Animals, Humans, Chondroitin Sulfate Proteoglycans, Zebrafish, Decorin, Axons, Nerve Regeneration, Extracellular Matrix Proteins, Central Nervous System, Mammals, Small Leucine-Rich Proteoglycans, Proteoglycans
- Abstract
Extracellular matrix (ECM) deposition after central nervous system (CNS) injury leads to inhibitory scarring in humans and other mammals, whereas it facilitates axon regeneration in the zebrafish. However, the molecular basis of these different fates is not understood. Here, we identify small leucine-rich proteoglycans (SLRPs) as a contributing factor to regeneration failure in mammals. We demonstrate that the SLRPs chondroadherin, fibromodulin, lumican, and prolargin are enriched in rodent and human but not zebrafish CNS lesions. Targeting SLRPs to the zebrafish injury ECM inhibits axon regeneration and functional recovery. Mechanistically, we find that SLRPs confer mechano-structural properties to the lesion environment that are adverse to axon growth. Our study reveals SLRPs as inhibitory ECM factors that impair axon regeneration by modifying tissue mechanics and structure, and identifies their enrichment as a feature of human brain and spinal cord lesions. These findings imply that SLRPs may be targets for therapeutic strategies to promote CNS regeneration., (© 2023. The Author(s).)
- Published
- 2023
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30. The science behind soft skills: Do's and Don'ts for early career researchers and beyond. A review paper from the EU-CardioRNA COST Action CA17129.
- Author
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Acharya S, Preda MB, Papatheodorou I, Palioura D, Giardoglou P, Tsata V, Erceg S, Barbalata T, Ben-Aicha S, Martino F, Nicastro L, Lazou A, Beis D, Martelli F, Sopic M, Emanueli C, Kardassis D, and Devaux Y
- Abstract
Soft skills are the elementary management, personal, and interpersonal abilities that are vital for an individual to be efficient at workplace or in their personal life. Each work place requires different set of soft skills. Thus, in addition to scientific/technical skills that are easier to access within a short time frame, several key soft skills are essential for the success of a researcher in today's international work environment. In this paper, the trainees and trainers of the EU-CardioRNA COST Action CA17129 training school on soft skills present basic and advanced soft skills for early career researchers. Here, we particularly emphasize on the importance of transferable and presentation skills, ethics, literature reading and reviewing, research protocol and grant writing, networking, and career opportunities for researchers. All these skills are vital but are often overlooked by some scholars. We also provide tips to ace in aforementioned skills that are crucial in a day-to-day life of early and late career researchers in academia and industry., Competing Interests: No competing interests were disclosed., (Copyright: © 2023 Acharya S et al.)
- Published
- 2023
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31. VE-CADHERIN is expressed transiently in early ISL1 + cardiovascular progenitor cells and facilitates cardiac differentiation.
- Author
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Maltabe VA, Melidoni AN, Beis D, Kokkinopoulos I, Paschalidis N, and Kouklis P
- Subjects
- Animals, Mice, Cell Differentiation, Embryonic Stem Cells metabolism, Antigens, CD metabolism, Cadherins genetics, Cadherins metabolism, Heart embryology
- Abstract
Adherens junctions (AJs) provide adhesive properties through cadherins and associated cytoplasmic catenins and participate in morphogenetic processes. We examined AJs formed between ISL1
+ cardiovascular progenitor cells during differentiation of embryonic stem cells (ESCs) in vitro and in mouse embryogenesis in vivo. We found that, in addition to N-CADHERIN, a percentage of ISL1+ cells transiently formed vascular endothelial (VE)-CADHERIN-mediated AJs during in vitro differentiation on days 4 and 5, and the same pattern was observed in vivo. Fluorescence-activated cell sorting (FACS) analysis extended morphological data showing that VE-CADHERIN+ /ISL1+ cells constitute a significant percentage of cardiac progenitors on days 4 and 5. The VE-CADHERIN+ /ISL1+ cell population represented one-third of the emerging FLK1+ /PDGFRa+ cardiac progenitor cells (CPCs) for a restricted time window (days 4-6). Ablation of VE-CADHERIN during ESC differentiation results in severe inhibition of cardiac differentiation. Disruption of all classic cadherins in the VE-CADHERIN+ population via a cadherin dominant-negative mutant's expression resulted in a dramatic decrease in the ISL1+ population and inhibition of cardiac differentiation., Competing Interests: Conflict of interests The authors declare no competing interests., (Copyright © 2023 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2023
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32. Cfdp1 Is Essential for Cardiac Development and Function.
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Giardoglou P, Deloukas P, Dedoussis G, and Beis D
- Subjects
- Animals, Humans, Heart, Phenotype, Wnt Signaling Pathway, Cardiovascular Diseases, Nuclear Proteins metabolism, Zebrafish metabolism
- Abstract
Cardiovascular diseases (CVDs) are the prevalent cause of mortality worldwide. A combination of environmental and genetic effectors modulates the risk of developing them. Thus, it is vital to identify candidate genes and elucidate their role in the manifestation of the disease. Large-scale human studies have revealed the implication of Craniofacial Development Protein 1 (CFDP1) in Coronary Artery Disease (CAD). CFDP1 belongs to the evolutionary conserved Bucentaur (BCNT) family, and to date, its function and mechanism of action in Cardiovascular Development are still unclear. We utilized zebrafish to investigate the role of cfdp1 in the developing heart due to the high genomic homology, similarity in heart physiology, and ease of experimental manipulations. We showed that cfdp1 was expressed during development, and we tested two morpholinos and generated a cfdp1 mutant line. The cfdp1
-/- embryos developed arrhythmic hearts and exhibited defective cardiac performance, which led to a lethal phenotype. Findings from both knockdown and knockout experiments showed that abrogation of cfdp1 leads to downregulation of Wnt signaling in embryonic hearts during valve development but without affecting Notch activation in this process. The cfdp1 zebrafish mutant line provides a valuable tool for unveiling the novel mechanism of regulating cardiac physiology and function. cfdp1 is essential for cardiac development, a previously unreported phenotype most likely due to early lethality in mice. The detected phenotype of bradycardia and arrhythmias is an observation with potential clinical relevance for humans carrying heterozygous CFDP1 mutations and their risk of developing CAD.- Published
- 2023
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33. Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart.
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Siatra P, Vatsellas G, Chatzianastasiou A, Balafas E, Manolakou T, Papapetropoulos A, Agapaki A, Mouchtouri ET, Ruchaya PJ, Korovesi AG, Mavroidis M, Thanos D, Beis D, and Kokkinopoulos I
- Abstract
The single curative measure for heart failure patients is a heart transplantation, which is limited due to a shortage of donors, the need for immunosuppression and economic costs. Therefore, there is an urgent unmet need for identifying cell populations capable of cardiac regeneration that we will be able to trace and monitor. Injury to the adult mammalian cardiac muscle, often leads to a heart attack through the irreversible loss of a large number of cardiomyocytes, due to an idle regenerative capability. Recent reports in zebrafish indicate that Tbx5a is a vital transcription factor for cardiomyocyte regeneration. Preclinical data underscore the cardioprotective role of Tbx5 upon heart failure. Data from our earlier murine developmental studies have identified a prominent unipotent Tbx5-expressing embryonic cardiac precursor cell population able to form cardiomyocytes, in vivo, in vitro and ex vivo. Using a developmental approach to an adult heart injury model and by employing a lineage-tracing mouse model as well as the use of single-cell RNA-seq technology, we identify a Tbx5-expressing ventricular cardiomyocyte-like precursor population, in the injured adult mammalian heart. The transcriptional profile of that precursor cell population is closer to that of neonatal than embryonic cardiomyocyte precursors. Tbx5, a cardinal cardiac development transcription factor, lies in the center of a ventricular adult precursor cell population, which seems to be affected by neurohormonal spatiotemporal cues. The identification of a Tbx5-specific cardiomyocyte precursor-like cell population, which is capable of dedifferentiating and potentially deploying a cardiomyocyte regenerative program, provides a clear target cell population for translationally-relevant heart interventional studies., (© 2023. The Author(s).)
- Published
- 2023
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34. Synthesis and Anti-Angiogenic Activity of Novel c(RGDyK) Peptide-Based JH-VII-139-1 Conjugates.
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Leonidis G, Koukiali A, Sigala I, Tsimaratou K, Beis D, Giannakouros T, Nikolakaki E, and Sarli V
- Abstract
Peptide-drug conjugates are delivery systems for selective delivery of cytotoxic agents to target cancer cells. In this work, the optimized synthesis of JH-VII-139-1 and its c(RGDyK) peptide conjugates is presented. The low nanomolar SRPK1 inhibitor, JH-VII-139-1, which is an analogue of Alectinib, was linked to the α
ν β3 targeting oligopeptide c(RGDyK) through amide, carbamate and urea linkers. The chemostability, cytotoxic and antiangiogenic properties of the synthesized hybrids were thoroughly studied. All conjugates retained mid nanomolar-level inhibitory activity against SRPK1 kinase and two out of four conjugates, geo75 and geo77 exhibited antiproliferative effects with low micromolar IC50 values against HeLa, K562, MDA-MB231 and MCF7 cancer cells. The activities were strongly related to the stability of the linkers and the release of JH-VII-139-1. In vivo zebrafish screening assays demonstrated the ability of the synthesized conjugates to inhibit the length or width of intersegmental vessels (ISVs). Flow cytometry experiments were used to test the cellular uptake of a fluorescein tagged hybrid in MCF7 and MDA-MB231 cells that revealed a receptor-mediated endocytosis process. In conclusion, most conjugates retained the inhibitory potency against SRPK1 as JH-VII-139-1 and demonstrated antiproliferative and antiangiogenic activities. Further animal model experiments are needed to uncover the full potential of such peptide conjugates in cancer therapy and angiogenesis-related diseases.- Published
- 2023
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35. Modern venomics-Current insights, novel methods, and future perspectives in biological and applied animal venom research.
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von Reumont BM, Anderluh G, Antunes A, Ayvazyan N, Beis D, Caliskan F, Crnković A, Damm M, Dutertre S, Ellgaard L, Gajski G, German H, Halassy B, Hempel BF, Hucho T, Igci N, Ikonomopoulou MP, Karbat I, Klapa MI, Koludarov I, Kool J, Lüddecke T, Ben Mansour R, Vittoria Modica M, Moran Y, Nalbantsoy A, Ibáñez MEP, Panagiotopoulos A, Reuveny E, Céspedes JS, Sombke A, Surm JM, Undheim EAB, Verdes A, and Zancolli G
- Subjects
- Animals, Research, Snakes genetics, Transcriptome, Proteomics, Venoms chemistry, Venoms genetics
- Abstract
Venoms have evolved >100 times in all major animal groups, and their components, known as toxins, have been fine-tuned over millions of years into highly effective biochemical weapons. There are many outstanding questions on the evolution of toxin arsenals, such as how venom genes originate, how venom contributes to the fitness of venomous species, and which modifications at the genomic, transcriptomic, and protein level drive their evolution. These questions have received particularly little attention outside of snakes, cone snails, spiders, and scorpions. Venom compounds have further become a source of inspiration for translational research using their diverse bioactivities for various applications. We highlight here recent advances and new strategies in modern venomics and discuss how recent technological innovations and multi-omic methods dramatically improve research on venomous animals. The study of genomes and their modifications through CRISPR and knockdown technologies will increase our understanding of how toxins evolve and which functions they have in the different ontogenetic stages during the development of venomous animals. Mass spectrometry imaging combined with spatial transcriptomics, in situ hybridization techniques, and modern computer tomography gives us further insights into the spatial distribution of toxins in the venom system and the function of the venom apparatus. All these evolutionary and biological insights contribute to more efficiently identify venom compounds, which can then be synthesized or produced in adapted expression systems to test their bioactivity. Finally, we critically discuss recent agrochemical, pharmaceutical, therapeutic, and diagnostic (so-called translational) aspects of venoms from which humans benefit., (© The Author(s) 2022. Published by Oxford University Press GigaScience.)
- Published
- 2022
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36. Protein tyrosine phosphatase receptor-ζ1 deletion triggers defective heart morphogenesis in mice and zebrafish.
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Katraki-Pavlou S, Kastana P, Bousis D, Ntenekou D, Varela A, Davos CH, Nikou S, Papadaki E, Tsigkas G, Athanasiadis E, Herradon G, Mikelis CM, Beis D, and Papadimitriou E
- Subjects
- Animals, Gene Deletion, Mice, Receptor-Like Protein Tyrosine Phosphatases, Class 5 metabolism, Zebrafish, Zebrafish Proteins metabolism, Heart embryology, Myocardium metabolism, Organogenesis, Receptor-Like Protein Tyrosine Phosphatases, Class 5 genetics, Zebrafish Proteins genetics
- Abstract
Protein tyrosine phosphatase receptor- ζ 1 (PTPRZ1) is a transmembrane tyrosine phosphatase receptor highly expressed in embryonic stem cells. In the present work, gene expression analyses of Ptprz1
-/- and Ptprz1+/+ mice endothelial cells and hearts pointed to an unidentified role of PTPRZ1 in heart development through the regulation of heart-specific transcription factor genes. Echocardiography analysis in mice identified that both systolic and diastolic functions are affected in Ptprz1-/- compared with Ptprz1+/+ hearts, based on a dilated left ventricular (LV) cavity, decreased ejection fraction and fraction shortening, and increased angiogenesis in Ptprz1-/- hearts, with no signs of cardiac hypertrophy. A zebrafish ptprz1-/- knockout was also generated and exhibited misregulated expression of developmental cardiac markers, bradycardia, and defective heart morphogenesis characterized by enlarged ventricles and defected contractility. A selective PTPRZ1 tyrosine phosphatase inhibitor affected zebrafish heart development and function in a way like what is observed in the ptprz1-/- zebrafish. The same inhibitor had no effect in the function of the adult zebrafish heart, suggesting that PTPRZ1 is not important for the adult heart function, in line with data from the human cell atlas showing very low to negligible PTPRZ1 expression in the adult human heart. However, in line with the animal models, Ptprz1 was expressed in many different cell types in the human fetal heart, such as valvar, fibroblast-like, cardiomyocytes, and endothelial cells. Collectively, these data suggest that PTPRZ1 regulates cardiac morphogenesis in a way that subsequently affects heart function and warrant further studies for the involvement of PTPRZ1 in idiopathic congenital cardiac pathologies. NEW & NOTEWORTHY Protein tyrosine phosphatase receptor ζ 1 (PTPRZ1) is expressed in fetal but not adult heart and seems to affect heart development. In both mouse and zebrafish animal models, loss of PTPRZ1 results in dilated left ventricle cavity, decreased ejection fraction, and fraction shortening, with no signs of cardiac hypertrophy. PTPRZ1 also seems to be involved in atrioventricular canal specification, outflow tract morphogenesis, and heart angiogenesis. These results suggest that PTPRZ1 plays a role in heart development and support the hypothesis that it may be involved in congenital cardiac pathologies.- Published
- 2022
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37. Zebrafish research in Greece: swimming against the current.
- Author
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Beis D
- Subjects
- Animals, Disease Models, Animal, Genome-Wide Association Study, Greece, Mice, Swimming, Zebrafish genetics
- Abstract
The zebrafish is a vertebrate model extensively used in Developmental Biology and Human Disease modeling, as it shares high genetic and physiological similarities with humans. It has become the second most popular animal model, after mice, with several advantages over the latter: zebrafish are easily housed and cared for; the cost of installing and maintaining a zebrafish facility is significantly lower than for mice; and they reproduce often and develop quickly. Using zebrafish complies with the 3Rs principles of laboratory animal use. Zebrafish embryos develop externally and are transparent, allowing for in vivo non-invasive imaging. There are many transgenic and mutant lines available that mimic most human diseases, including reporter lines for most signaling pathways. There are also several reverse genetic tools to functionally verify genes or variants of unknown significance, identified in Genome-Wide Association Studies (GWAS) or using Next Generation Sequencing (NGS) approaches. In addition, the model emerges as an invaluable whole animal platform for various stages of drug discovery efforts by exploring the possibility of creating high-throughput phenotypic-driven screens. These include phenotypic screenings, determinations of general and/or specific toxicity (cardiac, renal, hepatotoxicity etc.), and mechanism of action studies. Finally, zebrafish are able to retain their capacity to regenerate most organs during their entire life span, making them a well-established model for the study of organ regeneration. The European Zebrafish Society consists of more than 180 research labs throughout Europe. In Greece however, zebrafish use remains rather limited. Here I present here a brief historical overview of zebrafish research in Greece.
- Published
- 2022
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38. Corrigendum to: The new COST Action European Venom Network (EUVEN)-synergy and future perspectives of modern venomics.
- Author
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Modica MV, Ahmad R, Ainsworth S, Anderluh G, Antunes A, Beis D, Caliskan F, Serra MD, Dutertre S, Moran Y, Nalbantsoy A, Oukkache N, Pekar S, Remm M, von Reumont BM, Sarigiannis Y, Tarallo A, Tytgat J, Undheim EAB, Utkin Y, Verdes A, Violette A, and Zancolli G
- Published
- 2021
- Full Text
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39. Synthesis and Biological Evaluation of a c(RGDyK) Peptide Conjugate of SRPIN803.
- Author
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Leonidis G, Dalezis P, Trafalis D, Beis D, Giardoglou P, Koukiali A, Sigala I, Nikolakaki E, and Sarli V
- Abstract
In the present study, SRPIN803 and c(RGDyK)-SRPIN803 hybrid compounds were efficiently synthesized and evaluated for their stability in human plasma and buffers of pH 7.4 and 5.2. The hybrids were mainly cytostatic against a panel of tested cancer cells, whereas one c(RGDyK)-SRPIN803 hybrid, geo35, was the most active compound in this screen and was cytotoxic against cell lines MCF7 and MRC5 with IC
50 values of 61 and 63 μM, respectively. SRPIN803 and geo35 exhibited antiangiogenic activity in zebrafish embryos, and this effect was dose-dependent. Although c(RGDyK)-SRPIN803 hybrid compounds were found less potent compared to SRPIN803, they have shown activities interesting enough to illustrate the potential of this approach for the development of a new class of antiangiogenic compounds., Competing Interests: The authors declare no competing financial interest., (© 2021 The Authors. Published by American Chemical Society.)- Published
- 2021
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40. Targeting of SET/I2PP2A oncoprotein inhibits Gli1 transcription revealing a new modulator of Hedgehog signaling.
- Author
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Serifi I, Besta S, Karetsou Z, Giardoglou P, Beis D, Niewiadomski P, and Papamarcaki T
- Subjects
- Animals, CRISPR-Cas Systems genetics, Embryo, Nonmammalian metabolism, HEK293 Cells, Humans, Mice, Morpholinos pharmacology, NIH 3T3 Cells, Receptors, Cell Surface genetics, Zebrafish embryology, Zebrafish Proteins genetics, Zinc Finger Protein GLI1 metabolism, Hedgehog Proteins metabolism, Receptors, Cell Surface metabolism, Signal Transduction, Transcription, Genetic, Zebrafish genetics, Zebrafish Proteins metabolism, Zinc Finger Protein GLI1 genetics
- Abstract
The Hedgehog (Hh)/Gli signaling pathway controls cell proliferation and differentiation, is critical for the development of nearly every tissue and organ in vertebrates and is also involved in tumorigenesis. In this study, we characterize the oncoprotein SET/I2PP2A as a novel regulator of Hh signaling. Our previous work has shown that the zebrafish homologs of SET are expressed during early development and localized in the ciliated organs. In the present work, we show that CRISPR/Cas9-mediated knockdown of setb gene in zebrafish embryos resulted in cyclopia, a characteristic patterning defect previously reported in Hh mutants. Consistent with these findings, targeting setb gene using CRISPR/Cas9 or a setb morpholino, reduced Gli1-dependent mCherry expression in the Hedgehog reporter zebrafish line Tg(12xGliBS:mCherry-NLS). Likewise, SET loss of function by means of pharmacological inhibition and gene knockdown prevented the increase of Gli1 expression in mammalian cells in vitro. Conversely, overexpression of SET resulted in an increase of the expression of a Gli-dependent luciferase reporter, an effect likely attributable to the relief of the Sufu-mediated inhibition of Gli1. Collectively, our data support the involvement of SET in Gli1-mediated transcription and suggest the oncoprotein SET/I2PP2A as a new modulator of Hedgehog signaling.
- Published
- 2021
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41. From Proteomic Mapping to Invasion-Metastasis-Cascade Systemic Biomarkering and Targeted Drugging of Mutant BRAF-Dependent Human Cutaneous Melanomagenesis.
- Author
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Giannopoulou AF, Velentzas AD, Anagnostopoulos AK, Agalou A, Papandreou NC, Katarachia SA, Koumoundourou DG, Konstantakou EG, Pantazopoulou VI, Delis A, Michailidi MT, Valakos D, Chatzopoulos D, Syntichaki P, Iconomidou VA, Tsitsilonis OE, Papassideri IS, Voutsinas GE, Hatzopoulos P, Thanos D, Beis D, Anastasiadou E, Tsangaris GT, and Stravopodis DJ
- Abstract
Melanoma is classified among the most notoriously aggressive human cancers. Despite the recent progress, due to its propensity for metastasis and resistance to therapy, novel biomarkers and oncogenic molecular drivers need to be promptly identified for metastatic melanoma. Hence, by employing nano liquid chromatography-tandem mass spectrometry deep proteomics technology, advanced bioinformatics algorithms, immunofluorescence, western blotting, wound healing protocols, molecular modeling programs, and MTT assays, we comparatively examined the respective proteomic contents of WM115 primary ( n = 3955 proteins) and WM266-4 metastatic ( n = 6681 proteins) melanoma cells. It proved that WM115 and WM266-4 cells have engaged hybrid epithelial-to-mesenchymal transition/mesenchymal-to-epithelial transition states, with TGF-β controlling their motility in vitro. They are characterized by different signatures of SOX-dependent neural crest-like stemness and distinct architectures of the cytoskeleton network. Multiple signaling pathways have already been activated from the primary melanoma stage, whereas HIF1α, the major hypoxia-inducible factor, can be exclusively observed in metastatic melanoma cells. Invasion-metastasis cascade-specific sub-routines of activated Caspase-3-triggered apoptosis and LC3B-II-dependent constitutive autophagy were also unveiled. Importantly, WM115 and WM266-4 cells exhibited diverse drug response profiles, with epirubicin holding considerable promise as a beneficial drug for metastatic melanoma clinical management. It is the proteome navigation that enables systemic biomarkering and targeted drugging to open new therapeutic windows for advanced disease.
- Published
- 2021
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42. The new COST Action European Venom Network (EUVEN)-synergy and future perspectives of modern venomics.
- Author
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Modica MV, Ahmad R, Ainsworth S, Anderluh G, Antunes A, Beis D, Caliskan F, Serra MD, Dutertre S, Moran Y, Nalbantsoy A, Oukkache N, Pekar S, Remm M, von Reumont BM, Sarigiannis Y, Tarallo A, Tytgat J, Undheim EAB, Utkin Y, Verdes A, Violette A, and Zancolli G
- Subjects
- Venoms
- Abstract
Venom research is a highly multidisciplinary field that involves multiple subfields of biology, informatics, pharmacology, medicine, and other areas. These different research facets are often technologically challenging and pursued by different teams lacking connection with each other. This lack of coordination hampers the full development of venom investigation and applications. The COST Action CA19144-European Venom Network was recently launched to promote synergistic interactions among different stakeholders and foster venom research at the European level., (© The Author(s) 2021. Published by Oxford University Press GigaScience.)
- Published
- 2021
- Full Text
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43. A zebrafish forward genetic screen identifies an indispensable threonine residue in the kinase domain of PRKD2.
- Author
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Giardoglou P, Bournele D, Park M, Kanoni S, Dedoussis GV, Steinberg SF, Deloukas P, and Beis D
- Subjects
- Amino Acid Sequence, Amino Acid Substitution, Animals, Ectopic Gene Expression, Enzyme Activation, Heart embryology, Humans, Organogenesis genetics, Phenotype, Protein Kinase D2 chemistry, Protein Kinase D2 metabolism, Threonine chemistry, Zebrafish metabolism, Mutation, Protein Interaction Domains and Motifs, Protein Kinase D2 genetics, Threonine genetics, Zebrafish genetics
- Abstract
Protein kinase D2 belongs to a family of evolutionarily conserved enzymes regulating several biological processes. In a forward genetic screen for zebrafish cardiovascular mutants, we identified a mutation in the prkd2 gene. Homozygous mutant embryos develop as wild type up to 36 h post-fertilization and initiate blood flow, but fail to maintain it, resulting in a complete outflow tract stenosis. We identified a mutation in the prkd2 gene that results in a T757A substitution at a conserved residue in the kinase domain activation loop (T714A in human PRKD2) that disrupts catalytic activity and drives this phenotype. Homozygous mutants survive without circulation for several days, allowing us to study the extreme phenotype of no intracardiac flow, in the background of a functional heart. We show dysregulation of atrioventricular and outflow tract markers in the mutants and higher sensitivity to the Calcineurin inhibitor, Cyclosporin A. Finally we identify TBX5 as a potential regulator of PRKD2. Our results implicate PRKD2 catalytic activity in outflow tract development in zebrafish.This article has an associated First Person interview with the first author of the paper., Competing Interests: Competing interestsThe authors declare no competing or financial interests., (© 2021. Published by The Company of Biologists Ltd.)
- Published
- 2021
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44. A switch in pdgfrb + cell-derived ECM composition prevents inhibitory scarring and promotes axon regeneration in the zebrafish spinal cord.
- Author
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Tsata V, Möllmert S, Schweitzer C, Kolb J, Möckel C, Böhm B, Rosso G, Lange C, Lesche M, Hammer J, Kesavan G, Beis D, Guck J, Brand M, and Wehner D
- Subjects
- Animals, Cicatrix physiopathology, Models, Biological, Recovery of Function, Signal Transduction, Spinal Cord physiopathology, Spinal Cord Injuries pathology, Spinal Cord Injuries physiopathology, Zebrafish Proteins metabolism, Axons metabolism, Cicatrix pathology, Extracellular Matrix metabolism, Nerve Regeneration, Receptor, Platelet-Derived Growth Factor beta metabolism, Spinal Cord pathology, Zebrafish physiology
- Abstract
In mammals, perivascular cell-derived scarring after spinal cord injury impedes axonal regrowth. In contrast, the extracellular matrix (ECM) in the spinal lesion site of zebrafish is permissive and required for axon regeneration. However, the cellular mechanisms underlying this interspecies difference have not been investigated. Here, we show that an injury to the zebrafish spinal cord triggers recruitment of pdgfrb
+ myoseptal and perivascular cells in a PDGFR signaling-dependent manner. Interference with pdgfrb+ cell recruitment or depletion of pdgfrb+ cells inhibits axonal regrowth and recovery of locomotor function. Transcriptional profiling and functional experiments reveal that pdgfrb+ cells upregulate expression of axon growth-promoting ECM genes (cthrc1a and col12a1a/b) and concomitantly reduce synthesis of matrix molecules that are detrimental to regeneration (lum and mfap2). Our data demonstrate that a switch in ECM composition is critical for axon regeneration after spinal cord injury and identify the cellular source and components of the growth-promoting lesion ECM., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2020 Elsevier Inc. All rights reserved.)- Published
- 2021
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- View/download PDF
45. Crocins from Crocus sativus L. in the Management of Hyperglycemia. In Vivo Evidence from Zebrafish.
- Author
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Kakouri E, Agalou A, Kanakis C, Beis D, and Tarantilis PA
- Subjects
- Animals, Animals, Genetically Modified, Blood Glucose metabolism, Carotenoids analysis, Gluconeogenesis, Glucose metabolism, Insulin metabolism, Insulin-Secreting Cells metabolism, Ions, Pancreas embryology, Pancreas metabolism, Phosphoenolpyruvate Carboxykinase (GTP) metabolism, Plant Extracts pharmacology, Zebrafish, Carotenoids pharmacology, Crocus chemistry, Hyperglycemia drug therapy
- Abstract
Diabetes mellitus is a disease characterized by persistent high blood glucose levels and accompanied by impaired metabolic pathways. In this study, we used zebrafish to investigate the effect of crocins isolated from Crocus sativus L., on the control of glucose levels and pancreatic β-cells. Embryos were exposed to an aqueous solution of crocins and whole embryo glucose levels were measured at 48 h post-treatment. We showed that the application of crocins reduces zebrafish embryo glucose levels and enhances insulin expression. We also examined whether crocins are implicated in the metabolic pathway of gluconeogenesis. We showed that following a single application of crocins and glucose level reduction, the expression of phosphoenolpyruvate carboxykinase 1 ( pck1 ), a key gene involved in glucose metabolism, is increased. We propose a putative role for the crocins in glucose metabolism and insulin management.
- Published
- 2020
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46. In Full Force. Mechanotransduction and Morphogenesis during Homeostasis and Tissue Regeneration.
- Author
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Tsata V and Beis D
- Abstract
The interactions of form and function have been the focus of numerous studies in the context of development and more recently regeneration. Our understanding on how cells, tissues and organs sense and interpret external cues, such as mechanical forces, is becoming deeper as novel techniques in imaging are applied and the relevant signaling pathways emerge. These cellular responses can be found from bacteria to all multicellular organisms such as plants and animals. In this review, we focus on hemodynamic flow and endothelial shear stress during cardiovascular development and regeneration, where the interactions of morphogenesis and proper function are more prominent. In addition, we address the recent literature on the role of extracellular matrix and fibrotic response during tissue repair and regeneration. Finally, we refer to examples where the integration of multi-disciplinary approaches to understand the biomechanics of cellular responses could be utilized in novel medical applications.
- Published
- 2020
- Full Text
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47. RNAs in Brain and Heart Diseases.
- Author
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Beis D, Zerr I, Martelli F, Doehner W, and Devaux Y
- Subjects
- Animals, Biomarkers blood, Brain Diseases blood, Cell-Free Nucleic Acids blood, Heart Diseases blood, Humans, RNA, Untranslated blood, Signal Transduction, Brain Diseases metabolism, Cell-Free Nucleic Acids metabolism, Heart Diseases metabolism, RNA, Untranslated metabolism
- Abstract
In the era of single-cell analysis, one always has to keep in mind the systemic nature of various diseases and how these diseases could be optimally studied. Comorbidities of the heart in neurological diseases as well as of the brain in cardiovascular diseases are prevalent, but how interactions in the brain-heart axis affect disease development and progression has been poorly addressed. Several brain and heart diseases share common risk factors. A better understanding of the brain-heart interactions will provide better insights for future treatment and personalization of healthcare, for heart failure patients' benefit notably. We review here emerging evidence that studying noncoding RNAs in the brain-heart axis could be pivotal in understanding these interactions. We also introduce the Special Issue of the International Journal of Molecular Sciences RNAs in Brain and Heart Diseases-EU-CardioRNA COST Action.
- Published
- 2020
- Full Text
- View/download PDF
48. A Year in the Life of the EU-CardioRNA COST Action: CA17129 Catalysing Transcriptomics Research in Cardiovascular Disease.
- Author
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Robinson EL, Gomes CPDC, Potočnjak I, Hellemans J, Betsou F, de Gonzalo-Calvo D, Stoll M, Yilmaz MB, Ágg B, Beis D, Carmo-Fonseca M, Enguita FJ, Dogan S, Tuna BG, Schroen B, Ammerlaan W, Kuster GM, Carpusca I, Pedrazzini T, Emanueli C, Martelli F, and Devaux Y
- Abstract
The EU-CardioRNA Cooperation in Science and Technology (COST) Action is a European-wide consortium established in 2018 with 31 European country members and four associate member countries to build bridges between translational researchers from academia and industry who conduct research on non-coding RNAs, cardiovascular diseases and similar research areas. EU-CardioRNA comprises four core working groups (WG1-4). In the first year since its launch, EU-CardioRNA met biannually to exchange and discuss recent findings in related fields of scientific research, with scientific sessions broadly divided up according to WG. These meetings are also an opportunity to establish interdisciplinary discussion groups, brainstorm ideas and make plans to apply for joint research grants and conduct other scientific activities, including knowledge transfer. Following its launch in Brussels in 2018, three WG meetings have taken place. The first of these in Lisbon, Portugal, the second in Istanbul, Turkey, and the most recent in Maastricht, The Netherlands. Each meeting includes a scientific session from each WG. This meeting report briefly describes the highlights and key take-home messages from each WG session in this first successful year of the EU-CardioRNA COST Action., Competing Interests: No potential conflict of interest was reported by any of the authors. If you are interested in learning more about the EU-CardioRNA COST Action or to apply to join a Working Group, please contact the corresponding authors.
- Published
- 2020
- Full Text
- View/download PDF
49. Generation and Characterization of a CRISPR/Cas9 -Induced 3-mst Deficient Zebrafish.
- Author
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Katsouda A, Peleli M, Asimakopoulou A, Papapetropoulos A, and Beis D
- Subjects
- Animals, Hydrogen Sulfide metabolism, Regeneration, Sulfurtransferases metabolism, Zebrafish embryology, Zebrafish physiology, Zebrafish Proteins metabolism, CRISPR-Cas Systems, Oxidative Stress, Sulfurtransferases genetics, Zebrafish genetics, Zebrafish Proteins genetics
- Abstract
3-mercaptopyruvate sulfurtransferase (3-MST) is an enzyme capable of synthesizing hydrogen sulfide (H
2 S) and polysulfides. In spite of its ubiquitous presence in mammalian cells, very few studies have investigated its contribution to homeostasis and disease development, thus the role of 3-MST remains largely unexplored. Here, we present a clustered, regularly interspaced, short palindromic repeats (CRISPR)/CRISPR-associated protein-9 (Cas9) induced 3-mst mutant zebrafish line, which will allow the study of 3-MST's role in several biological processes. The 3-mst zebrafish orthologue was identified using a bioinformatic approach and verified by its ability to produce H2 S in the presence of 3-mercaptopyruvate (3-MP). Its expression pattern was analyzed during zebrafish early development, indicating predominantly an expression in the heart and central nervous system. As expected, no detectable levels of 3-Mst protein were observed in homozygous mutant larvae. In line with this, H2 S levels were reduced in 3-mst-/- zebrafish. Although the mutants showed no obvious morphological deficiencies, they exhibited increased lethality under oxidative stress conditions. The elevated levels of reactive oxygen species, detected following 3-mst deletion, are likely to drive this phenotype. In line with the increased ROS, we observed accelerated fin regenerative capacity in 3-mst deficient zebrafish. Overall, we provide evidence for the expression of 3-mst in zebrafish, confirm its important role in redox homeostasis and indicate the enzyme's possible involvement in the regeneration processes., Competing Interests: The authors declare no conflict of interest- Published
- 2020
- Full Text
- View/download PDF
50. TGF-β Signaling Promotes Tissue Formation during Cardiac Valve Regeneration in Adult Zebrafish.
- Author
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Bensimon-Brito A, Ramkumar S, Boezio GLM, Guenther S, Kuenne C, Helker CSM, Sánchez-Iranzo H, Iloska D, Piesker J, Pullamsetti S, Mercader N, Beis D, and Stainier DYR
- Subjects
- Animals, Cell Cycle, Endothelium metabolism, Extracellular Matrix metabolism, Heart Valves metabolism, Kidney metabolism, Models, Animal, Tissue Engineering methods, Zebrafish metabolism, Cell Differentiation, Endothelium cytology, Heart Valves cytology, Kidney cytology, Regeneration, Transforming Growth Factor beta metabolism, Zebrafish growth & development
- Abstract
Cardiac valve disease can lead to severe cardiac dysfunction and is thus a frequent cause of morbidity and mortality. Its main treatment is valve replacement, which is currently greatly limited by the poor recellularization and tissue formation potential of the implanted valves. As we still lack suitable animal models to identify modulators of these processes, here we used adult zebrafish and found that, upon valve decellularization, they initiate a rapid regenerative program that leads to the formation of new functional valves. After injury, endothelial and kidney marrow-derived cells undergo cell cycle re-entry and differentiate into new extracellular matrix-secreting valve cells. The TGF-β signaling pathway promotes the regenerative process by enhancing progenitor cell proliferation as well as valve cell differentiation. These findings reveal a key role for TGF-β signaling in cardiac valve regeneration and establish the zebrafish as a model to identify and test factors promoting cardiac valve recellularization and growth., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
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