180 results on '"Beretti F."'
Search Results
2. Estrogen receptor signaling in the ferutinin-induced osteoblastic differentiation of human amniotic fluid stem cells
- Author
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Zavatti, M., Guida, M., Maraldi, T., Beretti, F., Bertoni, L., La Sala, G.B., and De Pol, A.
- Published
- 2016
- Full Text
- View/download PDF
3. Enrichment in c-Kit improved differentiation potential of amniotic membrane progenitor/stem cells
- Author
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Resca, E., Zavatti, M., Maraldi, T., Bertoni, L., Beretti, F., Guida, M., La Sala, G.B., Guillot, P.V., David, A.L., Sebire, N.J., De Pol, A., and De Coppi, P.
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- 2015
- Full Text
- View/download PDF
4. Coat colours in the Massese sheep breed are associated with mutations in the agouti signalling protein (ASIP) and melanocortin 1 receptor (MC1R) genes
- Author
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Fontanesi, L., Dall’Olio, S., Beretti, F., Portolano, B., and Russo, V.
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- 2011
- Full Text
- View/download PDF
5. A first comparative map of copy number variations in the sheep genome
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Fontanesi, L., Beretti, F., Martelli, P.L., Colombo, M., Dall'Olio, S., Occidente, M., Portolano, B., Casadio, R., Matassino, D., and Russo, V.
- Published
- 2011
- Full Text
- View/download PDF
6. Sequence characterization of the melanocortin 1 receptor ( MC1R) gene in sheep with different coat colours and identification of the putative e allele at the ovine Extension locus
- Author
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Fontanesi, L., Beretti, F., Riggio, V., Dall’Olio, S., Calascibetta, D., Russo, V., and Portolano, B.
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- 2010
- Full Text
- View/download PDF
7. CD271 is expressed in melanomas with more aggressive behaviour, with correlation of characteristic morphology by in vivo reflectance confocal microscopy
- Author
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Beretti, F., Manni, P., Longo, C., Argenziano, G., Farnetani, F., Cesinaro, A. M., Witkowski, A. M., De Pol, A., and Pellacani, G.
- Published
- 2015
- Full Text
- View/download PDF
8. Single nucleotide polymorphisms in several porcine cathepsin genes are associated with growth, carcass, and production traits in Italian Large White pigs
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Russo, V., Fontanesi, L., Scotti, E., Beretti, F., Davoli, R., Costa, L. Nanni, Virgili, R., and Buttazzoni, L.
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Swine -- Carcasses ,Swine -- Properties ,Swine -- Genetic aspects ,Growth -- Genetic aspects ,Feed utilization efficiency -- Genetic aspects ,Cathepsins -- Genetic aspects ,Cathepsins -- Properties ,Swine -- Physiological aspects ,Single nucleotide polymorphisms -- Research ,Zoology and wildlife conservation - Abstract
To identify DNA markers associated with performance, carcass, and meat production traits including muscle postmortem cathepsin activity, several porcine genes encoding for lysosomal proteinases (cathepsin B, CTSB; cathepsin D, CTSD; cathepsin F, CTSF; cathepsin H, CTSH; cathepsin L, CTSL; and cathepsin Z, CTSZ) and for a cathepsin inhibitor (cystatin B) were investigated. Single nucleotide polymorphisms were identified in CTSD, CTSH, CTSL, and CTSZ genes with a combination of in silico expressed sequence tag database mining and single-strand conformation polymorphism analysis. Sequencing and PCR-RFLP protocols were used to validate the identified polymorphisms. Allele frequencies at these loci were investigated in Italian Large White, Landrace, Duroc, Pietrain, Belgian Landrace, Hampshire, and Meishan breeds. Genotyping CTSD and CTSH markers made it possible to genetically map these genes to SSC 2 and 7, respectively. Markers in CTSD, CTSH, CTSL, and CTSZ genes, together with mutations we previously reported in cystatin B, CTSB, and CTSF genes, were genotyped in an Italian Large White sib-tested population (272 or 482 animals). For these animals, meat quality traits (cathepsin B activity, pH measured at 2 h postmortem, pH measured at 24 h postmortem, glycogen, lactate, and glycolytic potential of semimembranosus muscle) and EBV for ADG, lean cuts (LC), backfat thickness (BFT), ham weight (HW), and feed:gain ratio (FGR) were determined. Analyzed markers did not show any association with muscle cathepsin B activity. Thus, it could be possible that different genes, other than these investigated candidates, affect this trait, which is correlated with the excessive softness defect of dry-cured hams. The results of association analysis confirmed the effects we already reported in another study for CTSF on ADG (P = 0.008), LC (P = 0.001), and BFT (P = 0.02). Moreover, CTSD was associated with ADG, LC (P < 0.0001), BFT, HW, and FGR (P < 0.001); CTSH was associated with FGR (P = 0.026); and CTSZ was associated with ADG (P = 0.006), LC (P = 0.01), HW (P = 0.024), and FGR (P = 0.029). The biochemical and physiological functions of the lysosomal proteinases, together with the results obtained in our investigation, suggest that the cathepsin gene family might play important roles affecting economic traits in pigs. Key words: candidate gene, cathepsin, cystatin, meat production, pig, single nucleotide polymorphism
- Published
- 2008
9. A Transmissible Cytotoxic Activity Isolated from a Patient with Brain Ischemia Causes Microglial Cell Activation and Dysfunction: Microglial Cell Activation and Dysfunction Induced by a Cytoxic Activity
- Author
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Beretti, F., Cenacchi, V., Portolani, M., Ardizzoni, A., Blasi, E., and Cermelli, C.
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- 2007
- Full Text
- View/download PDF
10. Electron microscope study on a transmissible cytotoxic factor isolated from cerebrospinal fluid of neurological patients: analysis of its structure and of its effects on various types of cell cultures
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Guerra, D, Ronchetti, I, Beretti, F, Bartoletti, A M, Pietrosemoli, P, Gelormini, M S, Malagolini, N, Muscatello, U, and Portolani, M
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- 2012
- Full Text
- View/download PDF
11. Mutations in the melanocortin 1 receptor (MC1R) gene are associated with coat colours in the domestic rabbit (Oryctolagus cuniculus)
- Author
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Fontanesi, L., Tazzoli, M., Beretti, F., and Russo, V.
- Published
- 2006
12. Amniotic fluid stem cell exosomes: Therapeutic perspective
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Beretti F, Zavatti M, Casciaro F, Comitini G, Franchi F, Barbieri V, La Sala GB, Maraldi T, and Beretti F, Zavatti M, Casciaro F, Comitini G, Franchi F, Barbieri V, La Sala GB, Maraldi T
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Adult ,exosome ,immunomodulation ,stem cells ,Biochemistry ,Molecular Medicine ,Clinical Biochemistry ,Primary Cell Culture ,Anti-Inflammatory Agents ,Apoptosis ,Exosomes ,Regenerative Medicine ,Pregnancy ,Transforming Growth Factor beta ,Humans ,Phytohemagglutinins ,Cell Proliferation ,Amniocentesi ,Hepatocyte Growth Factor ,Stem Cells ,Apoptosi ,Amniotic Fluid ,Phytohemagglutinin ,stem cell ,Exosome ,Anti-Inflammatory Agent ,Culture Media, Conditioned ,Pregnancy Trimester, Second ,Amniocentesis ,Leukocytes, Mononuclear ,Female ,Human - Abstract
It is widely accepted that the therapeutic potential of stem cells can be largely mediated by paracrine factors, also included into exosomes. Thus, stem cell-derived exosomes represent a major therapeutic option in regenerative medicine avoiding, if compared to stem cells graft, abnormal differentiation and tumor formation. Exosomes derived from mesenchymal stem cells (MSC) induce damaged tissue repair, and can also exert immunomodulatory effects on the differentiation, activation and function of different lymphocytes. Therefore, MSC exosomes can be considered as a potential treatment for inflammatory diseases and also an ideal candidate for allogeneic therapy due to their low immunogenicity. Amniotic fluid stem cells (AFSCs) are broadly multipotent, can be expanded in culture, and can be easily cryopreserved in cellular banks. In this study, morphology, phenotype, and protein content of exosomes released into amniotic fluid in vivo and from AFSC during in vitro culture (conditioned medium) were examined. We found that AFSC-derived exosomes present different molecules than amniotic fluid ones, some of them involved in immunomodulation, such transforming growth factor beta and hepatic growth factors. The immunomodulatory effect of AFSC's exosomes on peripheral blood mononuclear cells stimulated with phytohemagglutinin was compared to that of the supernatant produced by such conditioned media deprived of exosomes. We present evidence that the principal effect of AFSC conditioned media (without exosomes) is the induction of apoptosis in lymphocytes, whereas exposure to AFSC-derived exosomes decreases the lymphocyte's proliferation, supporting the hypothesis that the entire secretome of stem cells differently affects immune-response. © 2017 BioFactors, 44(2):158–167, 2018.
- Published
- 2018
13. Risk of sporadic amyotrophic lateral sclerosis associated with seropositivity for herpesviruses and echovirus-7
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Cermelli, C., Vinceti, M., Beretti, F., Pietrini, V., Nacci, G., Pietrosemoli, P., Bartoletti, A., Guidetti, D., Sola, P., Bergomi, M., Vivoli, G., and Portolani, M.
- Published
- 2002
14. Comparing two visualization protocols for tomosynthesis in screening: specificity and sensitivity of slabs versus planes plus slabs
- Author
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Iotti, V., Giorgi Rossi, P., Nitrosi, A., Ravaioli, S., Vacondio, R., Campari, C., Marchesi, V., Ragazzi, M., Bertolini, M., Besutti, G., Mori, C. A., Pattacini, P., Coriani, C., Pescarolo, M., Stefanelli, G., Tondelli, G., Beretti, F., Caffarri, S., Paterlini, L., Canovi, L., Colli, M., Boschini, M., Cavuto, S., and Braglia, L.
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medicine.medical_specialty ,Digital mammography ,Breast Neoplasms ,030218 nuclear medicine & medical imaging ,Breast neoplasms ,Mammography ,Mass screening ,Sensitivity and specificity ,Workflow ,Aged ,Carcinoma, Intraductal, Noninfiltrating ,Early Detection of Cancer ,Female ,Humans ,Mass Screening ,Middle Aged ,Reproducibility of Results ,Retrospective Studies ,03 medical and health sciences ,0302 clinical medicine ,False positive paradox ,medicine ,Radiology, Nuclear Medicine and imaging ,Protocol (science) ,medicine.diagnostic_test ,business.industry ,Repeated measures design ,General Medicine ,Confidence interval ,Tomosynthesis ,030220 oncology & carcinogenesis ,Radiology ,business - Abstract
Tomosynthesis (DBT) has proven to be more sensitive than digital mammography, but it requires longer reading time. We retrospectively compared accuracy and reading times of a simplified protocol with 1-cm-thick slabs versus a standard protocol of slabs + 1-mm-spaced planes, both integrated with synthetic 2D. We randomly selected 894 DBTs (including 12 cancers) from the experimental arm of the RETomo trial. DBTs were read by two radiologists to estimate specificity. A second set of 24 cancers (8 also present in the first set) mixed within 276 negative DBTs was read by two radiologists. In total, 28 cancers with 64 readings were used to estimate sensitivity. Radiologists read with both protocols separated by a 3-month washout. Only women that were positive at the screening reading were assessed. Variance was estimated taking into account repeated measures. Sensitivity was 82.8% (53/64, 95% confidence interval (95% CI) 67.2–92.2) and 90.6% (95% CI 80.2–95.8) with simplified and standard protocols, respectively. In the random screening setting, specificity was 97.9% (1727/1764, 95% CI 97.1–98.5) and 96.3% (95% CI 95.3–97.1), respectively. Inter-reader agreement was 0.68 and 0.54 with simplified and standard protocols, respectively. Median reading times with simplified protocol were 20% to 30% shorter than with standard protocol. A simplified protocol reduced reading time and false positives but may have a negative impact on sensitivity. • The adoption of digital breast tomosynthesis (DBT) in screening, more sensitive than mammography, could be limited by its potential effect on the radiologists’ workload, i.e., increased reading time and fatigue. • A DBT simplified protocol with slab only, compared to a standard protocol (slab plus planes) both integrated with synthetic 2D, reduced time and false positives but had a negative impact on sensitivity.
- Published
- 2019
15. Melanoma types by in vivo reflectance confocal microscopy correlated with protein and molecular genetic alterations: A pilot study
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Beretti, F., Bertoni, L., Farnetani, F., Pellegrini, C., Gorelli, G., Cesinaro, A. M., Reggiani Bonetti, L., Di Nardo, Lucia, Kaleci, S., Chester, J., Longo, C., Massi, D., Fargnoli, M. C., Pellacani, G., Di Nardo L., Beretti, F., Bertoni, L., Farnetani, F., Pellegrini, C., Gorelli, G., Cesinaro, A. M., Reggiani Bonetti, L., Di Nardo, Lucia, Kaleci, S., Chester, J., Longo, C., Massi, D., Fargnoli, M. C., Pellacani, G., and Di Nardo L.
- Abstract
Cutaneous melanoma (CM) is one of the most prevalent skin cancers, which lacks both a prognostic marker and a specific and lasting treatment, due to the complexity of the disease and heterogeneity of patients. Reflectance confocal microscopy (RCM) in vivo analysis is a versatile approach offering immediate morphological information, enabling the identification of four primary cutaneous RCM CM types. Whether RCM CM types are associated with a specific protein and molecular genetic profiles at the tissue level remains unclear. The current pilot study was designed to identify potential correlations between RCM CM types and specific biological characteristics, combining immunohistochemistry (IHC) and molecular analyses. Eighty primary CMs evaluated at patient bedside with RCM (type 1 [19, 24%], type 2 [12, 15%], type 3 [7, 9%] and type 4 [42, 52%]) were retrospectively evaluated by IHC stains (CD271, CD20, CD31, cyclin D1), fluorescence in situ hybridization FISH for MYC gain and CDKN2A loss and molecular analysis for somatic mutations (BRAF, NRAS and KIT). RCM CM types correlated with markers of stemness property, density of intra-tumoral lymphocytic B infiltrate and cyclin D1 expression, while no significant association was found with blood vessel density nor molecular findings. RCM CM types show a different marker profile expression, suggestive of a progression and an increase in aggressiveness, according to RCM morphologies.
- Published
- 2019
16. Pascal Paoli et l'image de la Corse au dix-huitième siècle
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Beretti, F
- Abstract
La période du gouvernement de Pascal Paoli, notamment dans les années 1764-1769, est cruciale dans l’histoire de la Corse. L’île est alors, en effet, un enjeu politique de portée européenne, car la domination de la république de Gênes est en déclin, et Choiseul convoite ce nouveau territoire, de crainte que cette place stratégique ne tombe entre les mains du roi de Grande-Bretagne. James Boswell joua un rôle fondamental dans la représentation littéraire de la Corse et la consolidation de la notoriété de Pascal Paoli en tant que champion du patriotisme et de la liberté. Influencé par l’admiration qu’il éprouvait alors envers Jean-Jacques Rousseau, Boswell alla rencontrer le chef des rebelles insulaires. Son récit de voyage, intitulé An Account of Corsica (1768), fut un véritable ‘bestseller’. Avant ce récit, la définition de la Corse tenait en deux lignes dans l’Encyclopédie de Paris. Après 1768, l’auteur de l’entrée ‘Corse’ dans l’Encyclopédie d’Yverdon puise abondamment dans l’ouvrage de Boswell. Comme le dit Jean Viviès, ‘An Account of Corsica s’est inséré dans le savoir des Lumières tel que l’exposent les diverses Encyclopédies’ (SVEC 245, p.468). Le présent ouvrage étudie l’évolution de la représentation littéraire de la Corse et de Paoli dans la première moitié du dix-huitième siècle, en replaçant dans son contexte le voyage de Boswell, et les diverses impressions des visiteurs britanniques du bref épisode ‘anglo-corse’ des années 1794-1796; le lien qui relie les deux périodes étant Pascal Paoli. Remerciments Introduction Chronologie 1725-1769 1. La naissance et l’épanouissement du mythe de Pascal Paoli (1730-1775) i. L’image de la Corse avant 1730 ii. Premiers signes de sympathie iii. La découverte de la Corse par les Français iv. Le voyage de Christopher Hervey en 1760 v. Les ‘Pèlerins de la Liberté’ et autres curieux vi. Le paysage et les hommes vus par les ‘Pèlerins de la Liberté’ vii. Pascal Paoli: un héros de Plutarque viii. Pascal Paoli inspire ‘les Muses de la Liberté’ (1769-1775) Chronologie 1789-1807 2. L’étoile pâlissante de Pascal Paoli (1775-1796) i. Un ‘peuple presque neuf’, ou les Français redécouvrent les Corses ii. Des amis de circonstance: Sir Gilbert Elliot et son état-major (1794-1796) iii. Le paysage et les hommes vus par les personnalités du royaume anglo-corse iv. La constitution du royaume anglo-corse, et Pascal Paoli, vus par Sir Gilbert Elliot et les personnalités de ce régime Conclusion générale Bibliographie Index
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- 2017
17. CD271 is expressed in melanoma with more aggressive behavior with correlation of characteristic morphology in in vivo reflectance confocal microscopy
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Beretti F, Manni P, Longo C, Farnetani F, Cesinaro A. M, Witkowski AM, De Pol A, Pellacani G., ARGENZIANO, Giuseppe, Beretti, F, Manni, P, Longo, C, Argenziano, Giuseppe, Farnetani, F, Cesinaro, A. M., Witkowski, Am, De Pol, A, and Pellacani, G.
- Published
- 2015
18. Apoptosis and inflammatory response in human astrocytes are induced by a transmissible cytotoxic agent of neurological origin
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Beretti, F., Andrea Ardizzoni, Cermelli, C., Guida, M., Maraldi, T., Pietrosemoli, P., Paulone, S., Pol, A., Blasi, E., and Portolani, M.
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Inflammation ,Cytotoxins ,Astrocytes ,Humans ,Cytotoxic factor ,Misfolded proteins ,Apoptosis ,Chemokines/cytokines ,Flow Cytometry ,Cell Line - Abstract
We demonstrated the presence of an in vitro transmissible cytotoxic agent (TCA) in the cerebrospinal fluid (CSF) of patients with different acute neurological diseases. The nature of this agent is still a matter of study since repeated attempts have failed to identify it as a conventional infectious agent. Here, we describe the mechanisms through which TCA affects human astrocytes, demonstrating: a late apoptotic process, mediated by caspases 9 and 3 activation, involving the Bcl2-Bak-axis; an early and late p38 MAPK activation; an interference with the IL-8 and MCP-1 secretory response. These in vitro data provide initial evidence of TCA involvement as a pro-apoptotic and pro-inflammatory signal, directly affecting astrocytic behavior. The implications of these findings in certain neurological diseases will be discussed.
- Published
- 2017
19. A Comparative Analysis of Copy Number Variation of the Sheep and Goat Genomes
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Fontanesi, L, Beretti, F, Dall’Olio, S, Occidente, M, Incoronato, C, Martelli, PL, Casadio, R, Matassino, D, Russo, V., RIGGIO, Valentina, PORTOLANO, Baldassare, Fontanesi L., Beretti F., Riggio V., Dall'Olio S., Occidente M., Incoronato C., Martelli P.L., Casadio R., Portolano B., Matassino D., Russo V., Fontanesi, L, Beretti, F, Riggio, V, Dall’Olio, S, Occidente, M, Incoronato, C, Martelli, PL, Casadio, R, Portolano, B, Matassino, D, and Russo, V
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COMPARATIVE GENOMICS ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,congenital, hereditary, and neonatal diseases and abnormalities ,comparative analysis, CNV, sheep, goat ,endocrine system diseases ,SHEEP ,mental disorders ,GOAT ,GENOMES ,COPY NUMBER VARIATION - Abstract
Recent studies have shown that copy number variants (CNVs) are important sources of variability of mammalian genomes. We applied a cross species array comparative genome hybridization (aCGH) experiment using as reference the cattle genome to investigate, for the first time, variability in the sheep and goat genomes derived from copy number variation and identified 431 and 358 CNVs, respectively. A comparison of these results to those obtained in other mammals for similar experiments is reported. The identified CNVs could be important in determining phenotypic and production differences between and within breeds. Further studies will be carried out to evaluate the identified CNVs from both functional and evolutionary points of view.
- Published
- 2010
20. Investigation of coat colour affecting genes in several sheep breeds
- Author
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BERETTI, F, DALLOLIO, S, RUSSO, V, FONTANESI, L., PORTOLANO, Baldassare, RIGGIO, Valentina, Beretti F., Portolano B., Dall'Olio S., Riggio V., Russo V., Fontanesi L., BERETTI, F, PORTOLANO, B, DALLOLIO, S, RIGGIO, V, RUSSO, V, and FONTANESI, L
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sheep ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,COAT COLOUR ,MC1R ,SNP ,SHEEP BREEDS ,AGOUTI - Published
- 2009
21. Identification of the causative mutation of the black non-agouti coat colour phenotype in the domestic rabbit (Oryctolagus cuniculus)
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FONTANESI, Luca, FORESTIER, L., Allain, Daniel, Deretz, Severine, Tazzoli, M., Scotti, E., BERETTI, F., Russo, V., Oulmouden, Ahmad, Fontanesi L., Forestier L., Allain D., Deretz S., Tazzoli M., Scotti E., Beretti F., Russo V., Oulmouden A., ProdInra, Migration, Génétique Expérimentale en Productions Animales (GEPA), and Institut National de la Recherche Agronomique (INRA)
- Subjects
[SDV] Life Sciences [q-bio] ,COAT COLOUR ,RABBIT ,[SDV]Life Sciences [q-bio] ,BLACK ,NOIR ,COULEUR DE ROBE ,AGOUTI ,RABBITS ,MUTATION - Published
- 2009
22. Case report: primary infection by human herpesvirus 6 variant a with the onset of myelitis
- Author
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Portolani, M., Pecorari, M., Gennari, W., Beretti, F., Sabbatini, A. M. T., Casolari, C., Rumpianesi, F., Claudio Cermelli, Sintini, M., and Mori, F.
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Central nervous system ,Human herpesvirus 6 variant A ,Myelitis ,Viral infection ,Herpesvirus 6, Human ,Genetic Variation ,Roseolovirus Infections ,Middle Aged ,Radiography ,DNA, Viral ,Cervical Vertebrae ,Humans ,Female ,Encephalomyelitis - Abstract
A case of primary infection by human herpesvirus 6 (HHV-6) variant A in a 54-year-old woman, which occurred at the same time as the onset of encephalomyelitis, is reported. The correlation between the two events is discussed. It is speculated that, during the early phase of the infection, the HHV-6 spread to the central nervous system and triggered a pathogenic process that initially developed without symptoms. When the neurological disorders appeared, HHV-6 had already established a latent state: only the virus carried by infected blood cells was detected in the cerebrospinal fluid.
- Published
- 2006
23. CD271 is expressed in melanomas with more aggressive behaviour, with correlation of characteristic morphology byin vivoreflectance confocal microscopy
- Author
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Beretti, F., primary, Manni, P., additional, Longo, C., additional, Argenziano, G., additional, Farnetani, F., additional, Cesinaro, A.M., additional, Witkowski, A.M., additional, De Pol, A., additional, and Pellacani, G., additional
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- 2015
- Full Text
- View/download PDF
24. Reactive oxygen species from NOX4 in nuclei of myelodysplastic syndromes
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Guida⁎, M., primary, Beretti, F., additional, De Pol, A., additional, Cocco, L.I., additional, and Maraldi, T., additional
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- 2012
- Full Text
- View/download PDF
25. Electron microscope study on a transmissible cytotoxic factor isolated from cerebrospinal fluid of neurological patients: analysis of its structure and of its effects on various types of cell cultures
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Guerra, D, primary, Ronchetti, I, additional, Beretti, F, additional, Bartoletti, A M, additional, Pietrosemoli, P, additional, Gelormini, M S, additional, Malagolini, N, additional, Muscatello, U, additional, and Portolani, M, additional
- Published
- 2011
- Full Text
- View/download PDF
26. Copy Number Variation and Missense Mutations of the Agouti Signaling Protein (ASIP) Gene in Goat Breeds with Different Coat Colors
- Author
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Fontanesi, L., primary, Beretti, F., additional, Riggio, V., additional, Gómez González, E., additional, Dall’Olio, S., additional, Davoli, R., additional, Russo, V., additional, and Portolano, B., additional
- Published
- 2009
- Full Text
- View/download PDF
27. Evaluation of post mortem stability of porcine skeletal muscle RNA
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Fontanesi, L., primary, Colombo, M., additional, Beretti, F., additional, and Russo, V., additional
- Published
- 2008
- Full Text
- View/download PDF
28. Investigation of candidate genes for glycolytic potential of porcine skeletal muscle: Association with meat quality and production traits in Italian Large White pigs
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Fontanesi, L., primary, Davoli, R., additional, Nanni Costa, L., additional, Beretti, F., additional, Scotti, E., additional, Tazzoli, M., additional, Tassone, F., additional, Colombo, M., additional, Buttazzoni, L., additional, and Russo, V., additional
- Published
- 2008
- Full Text
- View/download PDF
29. A new system for animal products traceability and authentication: use of DNA analysis of natural tracers and example of application to dry cured hams
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Fontanesi, L., primary, Pancaldi, M., additional, Carboni, E., additional, Beretti, F., additional, Paganelli, A., additional, Righini, G., additional, Davoli, R., additional, Ravaglia, S., additional, Salvi, A., additional, and Russo, V., additional
- Published
- 2007
- Full Text
- View/download PDF
30. Analysis of the melanocortin receptor 1 (MC1R) gene in Sicilian goat breeds
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Beretti, F., primary, Finocchiaro, R., additional, Portolano, B., additional, Davoli, R., additional, Russo, V., additional, and Fontanesi, L., additional
- Published
- 2007
- Full Text
- View/download PDF
31. Copy Number Variation and Missense Mutations of the Agouti Signaling Protein (ASIP) Gene in Goat Breeds with Different Coat Colors.
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Fontanesi, L., Beretti, F., Riggio, V., González, E. Gómez, Dall'Olio, S., Davoli, R., Russo, V., and Portolano, B.
- Subjects
- *
ANIMAL coloration , *BIOLOGICAL variation , *GENETIC mutation , *GENES , *GENETIC research - Abstract
In goats, classical genetic studies reported a large number of alleles at the Agouti locus with effects on coat color and pattern distribution. From these early studies, the dominant AWt (white/tan) allele was suggested to cause the white color of the Saanen breed. Here, we sequenced the coding region of the goat ASIP gene in 6 goat breeds (Girgentana, Maltese, Derivata di Siria, Murciano-Granadina, Camosciata delle Alpi, and Saanen), with different coat colors and patterns. Five single nucleotide polymorphisms (SNPs) were identified, 3 of which caused missense mutations in conserved positions of the cysteine-rich carboxy-terminal domain of the protein (p.Ala96Gly, p.Cys126Gly, and p.Val128Gly). Allele and genotype frequencies suggested that these mutations are not associated or not completely associated with coat color in the investigated goat breeds. Moreover, genotyping and sequencing results, deviation from Hardy-Weinberg equilibrium, as well as allele copy number evaluation from semiquantitative fluorescent multiplex PCR, indicated the presence of copy number variation (CNV) in all investigated breeds. To confirm the presence of CNV and evaluate its extension, we applied a bovine-goat cross-species array comparative genome hybridization (aCGH) experiment using a custom tiling array based on bovine chromosome 13. aCGH results obtained for 8 goat DNA samples confirmed the presence of CNV affecting a region of less that 100 kb including the ASIP and AHCY genes. In Girgentana and Saanen breeds, this CNV might cause the AWt allele, as already suggested for a similar structural mutation in sheep affecting the ASIP and AHCY genes, providing evidence for a recurrent interspecies CNV. However, other mechanisms may also be involved in determining coat color in these 2 breeds. Copyright © 2009 S. Karger AG, Basel [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
32. Propagation of a transmissible cytotoxic activity on cultures of human peripheral blood lymphocytes
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Portolani, M., Beretti, F., Bartoletti, A. M., Pietrosemoli, P., Salvioli, S., Franceschi, C., Paola Sena, Pol, A., Portolani M., Beretti F., Bartoletti A.M., Pietrosemoli P., Salvioli S., Franceschi C., Sena P., and De Pol A.
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transmissible cytotoxicity ,Cytotoxins ,Cell Culture Techniques ,misfolded proteins ,Apoptosis ,Cytotoxicity Tests, Immunologic ,Chlorocebus aethiops ,Animals ,Humans ,Lymphocytes ,human preripheral blood lymphocytes ,Vero Cells ,Cerebrospinal Fluid - Abstract
Positive results were attained when human peripheral blood lymphocytes (PBLs) were investigated for their ability to propagate a transmissible cytotoxic activity (TCA) isolated on VERO cell cultures from a sample of cerebrospinal fluid (CSF) drawn from a woman with ischemic brain injury. In consideration of this finding it can be assumed that "in vivo" blood lymphocytes contributed to give rise to the TCA detected "in vitro" in the CSF inoculum.
33. Outbreak of aseptic meningitis by ECHO 4: Prevalence of clinical cases among adults
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Portolani, M., Pecorari, M., Pietrosemoli, P., Bartoletti, A., Sabbatini, A. M. T., Meacci, M., Gennari, W., Bazzani, E., Beretti, F., and Giovanni Guaraldi
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Adult ,Male ,Adolescent ,Antibodies, Monoclonal ,Echovirus Infections ,Enzyme-Linked Immunosorbent Assay ,Antibodies, Viral ,Polymerase Chain Reaction ,Disease Outbreaks ,Enterovirus B, Human ,aseptic meningitis ,Feces ,Italy ,Chlorocebus aethiops ,Prevalence ,Animals ,Humans ,Female ,ECHO ,Meningitis, Aseptic ,Child ,Fluorescent Antibody Technique, Indirect ,Vero Cells - Abstract
Twenty five cases of meningitis occurred in urban areas surrounding a city (Modena) in Northern Italy, in the period May-July 1999. When the patients were admitted to the Infectious Diseases Division of the University of Modena and Reggio Emilia Hospital and studied by virological and serological methods, the meningitis proved to have an enteroviral origin and enterovirus ECHO 4 type was responsible for all cases of illness. An epidemiological characteristic of the enteroviral meninigitis outbreak was the adult age in 23 out of the 25 patients (mean age 24.50 +/- 7.84 years). The monthly distribution of the aseptic meningitis cases was the following: five cases occurred in May, 13 in June and seven in July. The origin of the spread of the virus infection and the reason for its sudden end remained unknown. The unusual drop in temperature which occurred in the geographic area involved in the aseptic meningitis outbreak at the beginning of August could have interfered with the slowdown in virus circulation.
34. Neutralization by human serum samples of a transmissible agent isolated from the cerebrospinal fluid of neurological patients
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Beretti F, Pietrosemoli P, Am, Bartoletti, Gerolmini M, Bellei E, Aldo Tomasi, and Portolani M
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Cytotoxic transmissible agent ,Misfolded proteins ,Human serum neutralizing activity ,Antioxidant enzymes ,Mn-superoxide dismutase ,Heme-oxygenase 1 ,Cytotoxins ,Superoxide Dismutase ,Cerebrospinal Fluid Proteins ,Fibroblasts ,Brain Ischemia ,Oxidative Stress ,Neutralization Tests ,Immunoglobulin G ,Animals ,Humans ,Lupus Erythematosus, Systemic ,Rabbits ,Proteostasis Deficiencies ,Neuroglia ,Cells, Cultured ,Heme Oxygenase-1 - Abstract
A transmissible cytotoxic agent thought to be associated with one or more misfolded protein(s) was found in several cerebrospinal fluid (CSF) samples from neurological patients. Since some experiments carried out to identify this unusual infectious factor showed the block of its propagation by rabbit gammaglobulins (IgGs), the search for such an activity by human IgGs was programmed. Neutralizing assays carried out using human sera as IgGs source showed a blocking property displayed by: twenty serum samples from as many patients with a diagnosis of acute infection, two of ten sera from healthy subjects and four serum samples from patients with lupus erythematous (SLE). When neutralizing sera were tested on cell cultures in immunofluorescence assays for the serum ability to label specific protein( s), similar fluorescent pictures resulted in treated and control cells. On the other hand, the SLE serum samples disclosed a granulosity of the nuclear material of cytotoxic cells in accordance with the DNA apoptotic laddering reported in previous papers. Oxidative disorders, as suggested by the immunoblotting analysis of the antioxidant enzymes Mn-superoxide dismutase (SOD2) and heme-oxygenase 1 (HO-1), point to an alteration of the oxidative pathway among the causes of the DNA damage induced by the cytotoxic transmissible agent under study.
35. In vivo confocal microscopy for detection and grading of dysplastic nevi: A pilot study.
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Pellacani G, Farnetani F, Gonzalez S, Longo C, Cesinaro AM, Casari A, Beretti F, Seidenari S, and Gill M
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- 2012
36. Coat colours in the Massese sheep breed are associated with mutations in the agouti signalling protein (ASIP) and melanocortin 1 receptor (MC1R) genes
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Luca Fontanesi, Francesca Beretti, Baldassare Portolano, Vincenzo Russo, Stefania Dall'Olio, Fontanesi, L, Dall’Olio, S, Beretti, F, Portolano, B, Russo, V, Fontanesi L., Dall’Olio S., Beretti F., Portolano B., and Russo V.
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Genetics ,Coat ,sheep ,Haplotype ,Locus (genetics) ,coat colour, sheep, ASIP, MC1R, mutations ,Biology ,mutations ,SF1-1100 ,Animal culture ,MASSESE ,Exon ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,COAT COLOUR ,ASIP ,Gene duplication ,MC1R ,Animal Science and Zoology ,Allele ,SHEEP BREED ,Gene ,Melanocortin 1 receptor - Abstract
Massese is an Italian dairy sheep breed characterized by animals with black skin and horns and black or apparent grey hairs. Owing to the presence of these two coat colour types, this breed can be considered an interesting model to evaluate the effects of coat colour gene polymorphisms on this phenotypic trait. Two main loci have been already shown to affect coat colour in sheep: Agouti and Extension coding for the agouti signalling protein (ASIP) and melanocortin 1 receptor (MC1R) genes, respectively. The Agouti locus is affected by a large duplication including the ASIP gene that may determine the Agouti white and tan allele (A(Wt)). Other disrupting or partially inactivating mutations have been identified in exon 2 (a deletion of 5 bp, D(5); and a deletion of 9 bp, D(9)) and in exon 4 (g.5172TA, p.C126S) of the ASIP gene. Three missense mutations in the sheep MC1R gene cause the dominant black E(D) allele (p.M73K and p.D121N) and the putative recessive e allele (p.R67C). Here, we analysed these ASIP and MC1R mutations in 161 Massese sheep collected from four flocks. The presence of one duplicated copy allele including the ASIP gene was associated with grey coat colour (P = 9.4E-30). Almost all animals with a duplicated copy allele (37 out of 41) showed uniform apparent grey hair and almost all animals without a duplicated allele (117 out of 120) were completely black. Different forms of duplicated alleles were identified in Massese sheep including, in almost all cases, copies with exon 2 disrupting or partially inactivating mutations making these alleles different from the A(Wt) allele. A few exceptions were observed in the association between ASIP polymorphisms and coat colour: three grey sheep did not carry any duplicated copy allele and four black animals carried a duplicated copy allele. Of the latter four sheep, two carried the E(D) allele of the MC1R gene that may be the cause of their black coat colour. The coat colour of all other black animals may be determined by non-functional ASIP alleles (non-agouti alleles, A(a)) and in a few cases by the E(D) Extension allele. At least three frequent ASIP haplotypes ([D(5):g.5172T], [N:g.5172A] and [D(5):g.5172A]) were detected (organized into six different diplotypes). In conclusion, the results indicated that coat colours in the Massese sheep breed are mainly derived by combining ASIP and MC1R mutations.
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- 2011
37. A melanocortin 1 receptor (MC1R) gene polymorphism is useful for authentication of Massese sheep dairy products
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Vincenzo Russo, Stefania Dall'Olio, Luca Fontanesi, Baldassare Portolano, Francesca Beretti, Donato Matassino, Fontanesi, L, Beretti, F, Dall'Olio, S, Portolano, B, Matassino, D, Russo, V, Fontanesi L., Beretti F., Dall’Olio S., Portolano B., Matassino D., and Russo V.
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AUTHENTICATION OF FOOD PRODUCTS ,Coat ,Veterinary medicine ,SNP ,Food Contamination ,Single-nucleotide polymorphism ,Biology ,Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Sensitivity and Specificity ,MASSESE ,Cow milk ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,Gene Frequency ,Species Specificity ,Cheese ,Polymorphism (computer science) ,MC1R ,Animals ,Allele ,Genetics ,Sheep ,food and beverages ,DNA ,General Medicine ,Breed ,Milk ,Female ,Animal Science and Zoology ,Dairy Products ,authentication, Massese, MC1R, mono-breed products, sheep breeds, SNP ,Receptor, Melanocortin, Type 1 ,DAIRY SHEEP ,Polymorphism, Restriction Fragment Length ,Mc1r gene ,Food Science ,Melanocortin 1 receptor - Abstract
Massese is an Italian sheep breed, with black or grey coat colour, mainly reared in the Tuscany and Emilia Romagna regions. Recently, the emerging interests in this breed have resulted in the production of Pecorino cheese obtained with only Massese milk. In order to be profitable, this marketing link between Massese breed and its products should be defended against fraudsters who could include milk of other sheep breeds or cow milk in Massese labelled productions. To identify the genetic factors affecting coat colour in sheep, we have recently analysed the melanocortin 1 receptor (MC1R) gene and identified several single nucleotide polymorphisms (SNPs). In this work, as a first step to set up a DNA based protocol for authentication of Massese dairy products, we further investigated the presence and distribution of one of these SNPs (c.-31G>A) in 143 Massese sheep and in another 13 sheep breeds (for a total of 351 animals). The Massese breed was fixed for allele c.-31A, whereas in all other breeds allele c.-31 G was the most frequent or with frequency of 0·50. At the same nucleotide position the cattleMC1Rgene carries the G nucleotide. Using these data we developed a method to detect adulterating milk (from other sheep breeds or from cow) in Massese dairy products based on the analysis of the c.-31G>A SNP. We first tested the sensitivity of the protocol and then applied it to analyse DNA extracted from ricotta and Pecorino cheese obtained with only Massese milk or obtained with unrestricted sheep and cattle milk. To our knowledge, this system represents the first one that can be used for breed authentication of a sheep production and that, at the same time, can reveal frauds derived from the admixture of milk of an unreported species.
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- 2011
38. A first comparative map of copy number variations in the sheep genome
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Vincenzo Russo, Rita Casadio, Pier Luigi Martelli, Francesca Beretti, Stefania Dall'Olio, M. Occidente, Donato Matassino, Baldassare Portolano, Luca Fontanesi, Mario P. Colombo, Fontanesi L, Beretti F, Martelli PL, Colombo M, Dall'Olio S, Occidente M, Portolano B, Casadio R, Matassino D, Russo V, Fontanesi, L, Beretti, F, Martelli, PL, Colombo, M, Dall'Olio, S, Occidente, M, Portolano, B, Casadio, R, Matassino, D, and Russo, V
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Ovis aries ,DNA Copy Number Variations ,Ruminant ,Sheep breeds ,aCGH ,Comparative map ,Copy number variation ,Ruminants ,Genomics ,Ovis arie ,Biology ,Genome ,Chromosomes ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,03 medical and health sciences ,Chromosome regions ,Genetics ,Animals ,Copy-number variation ,Gene ,030304 developmental biology ,Oligonucleotide Array Sequence Analysis ,COMPARATIVE MAPPING ,0303 health sciences ,Comparative Genomic Hybridization ,Sheep ,0402 animal and dairy science ,Comparative Genome Hybridization ,Chromosome Mapping ,04 agricultural and veterinary sciences ,biology.organism_classification ,040201 dairy & animal science ,Bovine genome ,Sarda ,Cattle - Abstract
article i nfo We carried out a cross species cattle-sheep array comparative genome hybridization experiment to identify copy number variations (CNVs) in the sheep genome analysing ewes of Italian dairy or dual-purpose breeds (Bagnolese, Comisana, Laticauda, Massese, Sarda, and Valle del Belice) using a tiling oligonucleotide array with ~385,000 probes designed on the bovine genome. We identified 135 CNV regions (CNVRs; 24 reported in more than one animal) covering ~10.5 Mb of the virtual sheep genome referred to the bovine genome (0.398%) with a mean and a median equal to 77.6 and 55.9 kb, respectively. A comparative analysis between the identified sheep CNVRs and those reported in cattle and goat genomes indicated that overlaps between sheep and both other species CNVRs are highly significant (Pb0.0001), suggesting that several chromosome regions might contain recurrent interspecies CNVRs. Many sheep CNVRs include genes with important biological functions. Further studies are needed to evaluate their functional relevance.
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- 2010
39. Sequence characterization of the melanocortin 1 receptor (MC1R) gene in sheep with different coat colour and identification of the putative e allele at the ovine Extension locus
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Vincenzo Russo, Francesca Beretti, Baldassare Portolano, Valentina Riggio, Davide Calascibetta, Luca Fontanesi, Stefania Dall'Olio, Fontanesi L, Beretti F, Riggio V, Dall'Olio S, Calascibetta D, Russo V, Portolano B., Fontanesi, L, Beretti, F, Riggio, V, Dall’Olio, S, Calascibetta, D, Russo, V, and Portolano, B
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Genetics ,Haplotype ,Coat colour ,MC1R ,Missense mutation ,Ovine breeds ,Single-nucleotide polymorphism ,Locus (genetics) ,Biology ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,COAT COLOUR ,Food Animals ,SHEEP ,BREEDS ,Epistasis ,Animal Science and Zoology ,Allele ,Gene ,Allele frequency ,POLYMORPHISMS ,Melanocortin 1 receptor - Abstract
Sequence of the melanocortin 1 receptor (MC1R) gene (the Extension locus) was obtained from a panel of 73 animals belonging to 9 Italian sheep breeds or populations (Appenninica, Bergamasca, Comisana, Cornigliese-like, Delle Langhe, Massese, Merinizzata Italiana, Sarda and Valle del Belice) with different coat colours. Evaluation of the identified polymorphisms on this phenotype was reported with in silico predictions and comparative approaches within and across breeds and across species. Five novel single nucleotide polymorphisms (SNPs), organized in three haplotypes, were detected. Another haplotype, including the two missense mutations already described for the ED allele, was identified in few Massese sheep. One SNP (c.199C > T) caused a predicted amino acid substitution (p.R67C) in a highly conserved position of the first intracellular loop of the MC1R protein. The same substitution causes recessive pheomelanism in other species. We propose that the p.67C allele represents the recessive e allele at the ovine Extension series that was, so far, not completely recognized in sheep by classical genetic studies. This polymorphism was analysed in a total of 388 sheep of the 9 investigated breeds. The p.67C allele was identified only in the Valle del Belice breed (allele frequency of 21.3% in 176 analysed animals of this breed) in which the presence of epistatic white-determining loci might mask, at least in part, its effects. Confirming the effect of this novel allele on coat colour will lead to new perspectives on the composition of specialized coloured sheep lines.
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- 2010
40. Copy number variation and missense mutations in the caprine agouti signaling protein (ASIP) gene are present in goat breeds with different coat colour
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FONTANESI L, DALLOLIO S, GÓMEZ GONZÁLEZ E, DAVOLI R, RUSSO V., BERETTI, Francesca, RIGGIO, Valentina, PORTOLANO, Baldassare, DALL'OLIO S., FONTANESI L., BERETTI F., RIGGIO V., GONZALES E.G., DAVOLI R., PORTOLANO B., RUSSO V., FONTANESI L, BERETTI F, DALLOLIO S, RIGGIO V, GÓMEZ GONZÁLEZ E, DAVOLI R, PORTOLANO B, and RUSSO V
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Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,ASIP ,COAT COLOUR ,MISSENSE MUTATION ,ASIP GENE ,GOAT ,COPY NUMBER VARIATION - Published
- 2008
41. Analysis of the melanocortin receptor 1 (MC1R) gene in Sicilian goat breeds
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Vincenzo Russo, Luca Fontanesi, Roberta Davoli, B. Portolano, Francesca Beretti, Raffaella Finocchiaro, BERETTI, F, FINOCCHIARO, R, PORTOLANO, B, DAVOLI, R, RUSSO, V, FONTANESI, L, Beretti F., Finocchiaro R., Portolano B., Davoli R., Russo V., and Fontanesi L.
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Genetics ,Coat ,integumentary system ,MUTATIONS ,digestive, oral, and skin physiology ,goat ,Locus (genetics) ,Phenotypic trait ,COAT COLOUR GENES ,Biology ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,BREEDS ,MC1R ,Melanocortin Receptor 1 ,Epistasis ,Animal Science and Zoology ,lcsh:Animal culture ,Mc1r gene ,lcsh:SF1-1100 ,Melanocortin 1 receptor - Abstract
Mammalian coat colour is mainly determined by the distribution of two different types of melanins: pheomelanin (red/yellow pigments) and eumelanin (black pigments). Their synthesis is regulated by the melanocortin 1 receptor (MC1R/Extension locus) that binds the α-melanocyte-stimulating hormone (α-MSH) and the agouti signalling protein (ASIP, coded by the Agouti locus). In mammals, several studies have reported that loss-of-function mutations in MC1R lead to red/yellow pigmentation, while gain-of-function mutations lead to black/dark colours. Mutations at the Agouti locus exert, in general, epistatic interactions on the Extension locus. In goats, classical genetic studies have indicated that variations at the Agouti locus may be the main source of colour variability within and between breeds, while the effect of the Extension locus on this phenotypic trait has been only partially deduced. In order to better understand the role of the Extension locus on coat colour in this species, here we analysed...
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- 2007
42. An initial comparative map of copy number variations in the goat (Capra hircus) genome
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Valentina Riggio, Stefania Dall'Olio, Vincenzo Russo, Baldassare Portolano, Luca Fontanesi, Michela Colombo, Rita Casadio, Pier Luigi Martelli, Francesca Beretti, Fontanesi L., Martelli P.L., Beretti F., Riggio V., Dall'Olio S., Colombo M., Casadio R., Russo V., Portolano B., Fontanesi, L, Martelli, PL, Beretti, F, Riggio, V, Dall'Olio, S, Colombo, M, Casadio, R, Russo, V, and Portolano, B
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Breeding ,Genome ,Polymerase Chain Reaction ,Settore AGR/17 - Zootecnica Generale E Miglioramento Genetico ,MOUSE STRAINS ,Chromosome regions ,Capra hircus ,GOAT ,Copy-number variation ,ANGORA-GOATS ,GENE-EXPRESSION ,Genetics ,0303 health sciences ,Comparative Genomic Hybridization ,Goats ,Chromosome Mapping ,04 agricultural and veterinary sciences ,Bovine genome ,Databases, Nucleic Acid ,Biotechnology ,Research Article ,lcsh:QH426-470 ,DNA Copy Number Variations ,SEGMENTAL DUPLICATIONS ,lcsh:Biotechnology ,Molecular Sequence Data ,Biology ,Fluorescence ,Structural variation ,PRODUCTION TRAITS ,Birds ,03 medical and health sciences ,FAMILY BOVIDAE ,Gene mapping ,lcsh:TP248.13-248.65 ,Sequence Homology, Nucleic Acid ,FINE-SCALE ,Animals ,Humans ,False Positive Reactions ,030304 developmental biology ,COPY NUMBER VARIATION ,0402 animal and dairy science ,Reproducibility of Results ,040201 dairy & animal science ,Chromosomes, Mammalian ,DNA-SEQUENCES ,STRUCTURAL VARIATION ,lcsh:Genetics ,CANDIDATE LOCI ,copy number variation, goats ,Cattle ,Comparative genomic hybridization - Abstract
Background The goat (Capra hircus) represents one of the most important farm animal species. It is reared in all continents with an estimated world population of about 800 million of animals. Despite its importance, studies on the goat genome are still in their infancy compared to those in other farm animal species. Comparative mapping between cattle and goat showed only a few rearrangements in agreement with the similarity of chromosome banding. We carried out a cross species cattle-goat array comparative genome hybridization (aCGH) experiment in order to identify copy number variations (CNVs) in the goat genome analysing animals of different breeds (Saanen, Camosciata delle Alpi, Girgentana, and Murciano-Granadina) using a tiling oligonucleotide array with ~385,000 probes designed on the bovine genome. Results We identified a total of 161 CNVs (an average of 17.9 CNVs per goat), with the largest number in the Saanen breed and the lowest in the Camosciata delle Alpi goat. By aggregating overlapping CNVs identified in different animals we determined CNV regions (CNVRs): on the whole, we identified 127 CNVRs covering about 11.47 Mb of the virtual goat genome referred to the bovine genome (0.435% of the latter genome). These 127 CNVRs included 86 loss and 41 gain and ranged from about 24 kb to about 1.07 Mb with a mean and median equal to 90,292 bp and 49,530 bp, respectively. To evaluate whether the identified goat CNVRs overlap with those reported in the cattle genome, we compared our results with those obtained in four independent cattle experiments. Overlapping between goat and cattle CNVRs was highly significant (P < 0.0001) suggesting that several chromosome regions might contain recurrent interspecies CNVRs. Genes with environmental functions were over-represented in goat CNVRs as reported in other mammals. Conclusions We describe a first map of goat CNVRs. This provides information on a comparative basis with the cattle genome by identifying putative recurrent interspecies CNVs between these two ruminant species. Several goat CNVs affect genes with important biological functions. Further studies are needed to evaluate the functional relevance of these CNVs and their effects on behavior, production, and disease resistance traits in goats.
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- 2010
- Full Text
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43. Unravelling Heterogeneity of Amplified Human Amniotic Fluid Stem Cells Sub-Populations
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Francesco Alviano, Marco Demaria, Emma Bertucci, Pierluigi Reschiglian, Silvia Zia, Manuela Zavatti, Francesca Casciaro, Barbara Roda, Matilde Y. Follo, Andrea Zattoni, Tullia Maraldi, Francesca Beretti, Mattia Forcato, Laura Bonsi, Damage and Repair in Cancer Development and Cancer Treatment (DARE), Restoring Organ Function by Means of Regenerative Medicine (REGENERATE), Casciaro F., Zia S., Forcato M., Zavatti M., Beretti F., Bertucci E., Zattoni A., Reschiglian P., Alviano F., Bonsi L., Follo M.Y., Demaria M., Roda B., and Maraldi T.
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DNA Repair ,DNA repair ,Biology ,Regenerative Medicine ,Regenerative medicine ,Article ,amniotic fluid stem cell ,Transcriptome ,stemness ,amniotic fluid stem cells ,Live cell imaging ,Gene expression ,sorting ,transcriptome ,Humans ,RNA-Seq ,Progenitor cell ,lcsh:QH301-705.5 ,Gene ,Cells, Cultured ,Cell Proliferation ,Gene Expression Profiling ,Multipotent Stem Cells ,Stem Cells ,Cell Differentiation ,General Medicine ,Amniotic Fluid ,Cell biology ,stemne ,lcsh:Biology (General) ,Leukocytes, Mononuclear ,Stem cell ,Signal Transduction - Abstract
Human amniotic fluid stem cells (hAFSCs) are broadly multipotent immature progenitor cells with high self-renewal and no tumorigenic properties. These cells, even amplified, present very variable morphology, density, intracellular composition and stemness potential, and this heterogeneity can hinder their characterization and potential use in regenerative medicine. Celector®, (Stem Sel ltd.) is a new technology that exploits the Non-Equilibrium Earth Gravity Assisted Field Flow Fractionation principles to characterize and label-free sort stem cells based on their solely physical characteristics without any manipulation. Viable cells are collected and used for further studies or direct applications. In order to understand the intrapopulation heterogeneity, various fractions of hAFSCs were isolated using the Celector®, profile and live imaging feature. The gene expression profile of each fraction was analysed using whole-transcriptome sequencing (RNAseq). Gene Set Enrichment Analysis identified significant differential expression in pathways related to Stemness, DNA repair, E2F targets, G2M checkpoint, hypoxia, EM transition, mTORC1 signalling, Unfold Protein Response and p53 signalling. These differences were validated by RT-PCR, immunofluorescence and differentiation assays. Interestingly, the different fractions showed distinct and unique stemness properties. These results suggest the existence of deep intra-population differences that can influence the stemness profile of hAFSCs. This study represents a proof-of-concept of the importance of selecting certain cellular fractions with the highest potential to use in regenerative medicine.
- Published
- 2021
44. A new approach for the separation, characterization and testing of potential prionoid protein aggregates through hollow-fiber flow field-flow fractionation and multi-angle light scattering
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Andrea Alessandrini, Andrea Zattoni, Paolo Facci, Marinella Portolani, Valentina Marassi, Tullia Maraldi, Pierluigi Reschiglian, Barbara Roda, Francesca Beretti, Marassi V., Beretti F., Roda B., Alessandrini A., Facci P., Maraldi T., Zattoni A., Reschiglian P., and Portolani M.
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Light ,Prions ,Ion chromatography ,Multiangle light scattering ,Amyloidogenic Proteins ,02 engineering and technology ,Fractionation ,Field flow fractionation to study aggregation-dependent disease ,Protein aggregation ,Prionoid protein aggregate ,Microscopy, Atomic Force ,01 natural sciences ,Biochemistry ,Analytical Chemistry ,Protein–protein interaction ,Field flow fractionation to study aggregation-dependent diseases ,HF5 MALS of protein aggregates ,Prionoid protein aggregates ,Protein-derived toxic pathways ,HF5 MALS of protein aggregate ,Protein Aggregates ,Cell Line, Tumor ,Humans ,Scattering, Radiation ,Environmental Chemistry ,Particle Size ,Cytotoxicity ,Spectroscopy ,Chemistry ,010401 analytical chemistry ,Chromatography, Ion Exchange ,021001 nanoscience & nanotechnology ,Fractionation, Field Flow ,Amyloidogenic Protein ,0104 chemical sciences ,Prion ,Biophysics ,Protein-derived toxic pathway ,Molar mass distribution ,Protein folding ,0210 nano-technology ,Human - Abstract
Protein misfolding and aggregation are the common mechanisms in a variety of aggregation-dependent diseases. The compromised proteins often assemble into toxic, accumulating amyloid-like structures of various lengths and their toxicity can also be transferred both in vivo and in vitro a prion-like behavior. The characterization of protein interactions, degradation and conformational dynamics in biological systems still represents an analytical challenge in the prion-like protein comprehension. In our work, we investigated the nature of a transferable cytotoxic agent, presumably a misfolded protein, through the coupling of a multi-detector, non-destructive separation platform based on hollow-fiber flow field-flow fractionation with imaging and downstream in vitro tests. After purification with ion exchange chromatography, the transferable cytotoxic agentwas analyzed with Atomic Force Microscopy and statistical analysis, showing that the concentration of protein dimers and low n-oligomer forms was higher in the cytotoxic sample than in the control preparation. To assess whether the presence of these species was the actual toxic and/or self-propagating factor, we employed HF5 fractionation, with UV and Multi-Angle Light Scattering detection, to define proteins molar mass distribution and abundance, and fractionate the sample into size-homogeneous fractions. These fractions were then tested individually in vitro to investigate the direct correlation with cytotoxicity. Only the later-eluted fraction, which contains high-molar mass aggregates, proved to be toxic onto cell cultures. Moreover, it was observed that the selective transfer of toxicity also occurs for one lower-mass fraction, suggesting that two different mechanisms, acute and later induced toxicity, are in place. These results strongly encourage the efficacy of this platform to enable the identification of protein toxicants.
- Published
- 2019
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45. Pascal Paoli à Maria Cosway
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Beretti, F
- Abstract
Le fonds documentaire qui est à la source de cet ouvrage est conservé dans le Fondazione Maria Cosway à Lodi, en Italie. Il comprend essentiellement un corpus de cent vingt-trois lettres et billets datant de 1782 à 1803, qui constitue la correspondance active du chef corse Pascal Paoli (1725-1807) à Maria Cosway (1760-1838), l’épouse du célèbre peintre miniaturiste Richard Cosway. Chaque document, dont l’original est en italien, est retranscrit, traduit et annoté; l’édition comporte en outre une chronologie historique, une chronologie des lettres et un index. Cette correspondance éclaire sous un jour nouveau la biographie de Pascal Paoli au temps de son séjour en Angleterre, période qui constituait une lacune importante dans ce domaine. Elle précise la nature des liens entre le chef corse et la famille Bonaparte. Envers sa correspondante, l’auteur se révèle malicieux, spirituel, affectueusement ironique, moralisateur, ferme sur le décorum qu’il croit devoir maintenir, mais aussi traversé parfois par le doute, la tristesse et le découragement, voire l’angoisse métaphysique. Le portrait moral qui en ressort est celui d’un personnage amateur de littérature, de peinture et de musique, plus sensible, plus vivant, moins figé que l’image littéraire héroïsée et ‘monumentale’ du ‘champion de la liberté’ que James Boswell a laissé à la postérité dans son Account of Corsica and Memoirs of Pascal Paoli. On perçoit aussi la riche et attachante personnalité de la destinaire de ces lettres. Le seul fait que Maria Cosway ait eu le souci de conserver ces documents témoigne moins de sa vanité que de son intelligence. Un autre intérêt, et non des moindres, est la toile de fond, esquissée par les nombreuses allusions à la pléiade de célébrités du monde des lettres et des arts que Paoli côtoyait. Cette évocation illustre à quel point Londres était alors un ardent et brillant foyer de culture. Liste des illustrations Avant-propos Remerciements Abréviations et citations Chronologie biographique Chronologie de la correspondance Introduction I. Lettres datées de Pascal Paoli à Maria Cosway II. Lettres non datées III. Autres documents Liste des ouvrages cités Index
- Published
- 2017
46. Characterization of the rabbit agouti signaling protein (ASIP) gene: Transcripts and phylogenetic analyses and identification of the causative mutation of the nonagouti black coat colour
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Lionel Forestier, Vincenzo Russo, Ahmad Oulmouden, Séverine Deretz-Picoulet, Daniel Allain, Terence J. Robinson, Luca Fontanesi, Elena Pecchioli, Cristiano Vernesi, Francesca Beretti, Emilio Scotti, Jason L. Malaney, Sezione di Allevamenti Zootecnici, Alma Mater Studiorum University of Bologna (UNIBO), Unité de Génétique Moléculaire Animale (UGMA), Université de Limoges (UNILIM)-Institut National de la Recherche Agronomique (INRA), Station d'Amélioration Génétique des Animaux (SAGA), Institut National de la Recherche Agronomique (INRA), Génétique Expérimentale en Productions Animales (GEPA), Research and Innovation Centre, Edmund Mach Foundation (FEM), Department of Botany and Zoology, Evolutionary Genomics Group, Stellenbosch University, Museum of Southwestern Biology and Department of Biology, The University of New Mexico [Albuquerque], Unité de Génétique Moléculaire Animale (UMR GMA), Institut National de la Recherche Agronomique (INRA)-Université de Limoges (UNILIM), Fontanesi L., Forestier L., Allain D., Scotti E., Beretti F., Deretz-Picoulet S., Pecchioli E., Vernesi C., Robinson T.J., Malaney J.L., Russo V., and Oulmouden A.
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Coat ,GENE EXPRESSION ,Genotype ,[SDV]Life Sciences [q-bio] ,DNA Mutational Analysis ,Molecular Sequence Data ,rabbit ,Locus (genetics) ,transcription analysis ,Biology ,oryctolagus cuniculus ,03 medical and health sciences ,Exon ,Signaling proteins ,Genetics ,Animals ,Allele ,lagomorpha ,Gene ,Alleles ,Phylogeny ,030304 developmental biology ,Melanins ,0303 health sciences ,Phylogenetic tree ,integumentary system ,Pigmentation ,0402 animal and dairy science ,Wild type ,04 agricultural and veterinary sciences ,Sequence Analysis, DNA ,040201 dairy & animal science ,Molecular biology ,Mutation ,agouti ,Agouti Signaling Protein ,Rabbits ,Hair ,coat colour - Abstract
The agouti locus encodes the agouti signalling protein (ASIP) which is involved in determining the switch from eumelanin to pheomelanin synthesis in melanocytes. In the domestic rabbit (Oryctolagus cuniculus) early studies indicated three alleles at this locus: A, light-bellied agouti (wild type); at, black and tan; a, black nonagouti. We characterized the rabbit ASIP gene and identified the causative mutation (an insertion in exon 2) of the black nonagouti allele whose frequency was evaluated in 31 breeds. Phylogenetic analysis of ASIP sequences from Oryctolagus and 9 other species of the family Leporidae placed Oryctolagus as sister species to Pentalagus and Bunolagus. Transcription analysis in wild type agouti rabbits revealed the presence of two major transcripts with different 5′-untranslated regions having ventral or dorsal skin specific expression. ASIP gene transcripts were also detected in all examined rabbit tissues distinguishing the rabbit expression pattern from what was observed in wild type mice.
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- 2010
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47. A-type lamins and signaling: The PI 3-kinase/Akt pathway moves forward
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Nadir M. Maraldi, Jessika Bertacchini, Sandra Marmiroli, Francesca Beretti, Anto De Pol, Marianna Guida, Vittoria Cenni, Giovanna Lattanzi, Marmiroli S, Bertacchini J, Beretti F, Cenni V, Guida M, De Pol A, Maraldi NM, and Lattanzi G.
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MAPK/ERK pathway ,Cell signaling ,animal structures ,Physiology ,Clinical Biochemistry ,LAMINS PHOSPHORYLATION AKT/PKB NUCLEUS LAMINOPHATY SIGNALLING ,Biology ,Phosphatidylinositol 3-Kinases ,Animals ,Humans ,Protein kinase B ,PI3K/AKT/mTOR pathway ,integumentary system ,Kinase ,Cell Biology ,Lamin Type A ,Cell biology ,Disease Models, Animal ,Mutation ,embryonic structures ,Nuclear lamina ,Signal transduction ,Proto-Oncogene Proteins c-akt ,Lamin ,Protein Binding ,Signal Transduction - Abstract
Lamin A/C is a nuclear lamina constituent mutated in a number of human inherited disorders collectively referred to as laminopathies. The occurrence and significance of lamin A/C interplay with signaling molecules is an old question, suggested by pioneer studies performed in vitro. However, this relevant question has remained substantially unanswered, until data obtained in cellular and organismal models of laminopathies have indicated two main aspects of lamin A function. The first aspect is that lamins establish functional interactions with different protein platforms, the second aspect is that lamin A/C activity and altered function may elicit different effects in different cells and tissue types and even in different districts of the same tissue. Both these observations strongly suggest that signaling mechanisms targeting lamin A/C or its binding partners may regulate such a plastic behavior. A number of very recent data show involvement of kinases, as Akt and Erk, or phosphatases, as PP1 and PP2, in lamin A-linked cellular mechanisms. Moreover, altered activation of signaling in laminopathies and rescue of the pathological phenotype in animal models by inhibitors of signaling pathways, strongly suggest that signaling effectors related to lamin A/C may be implicated in the pathogenesis of laminopathies and may represent targets of therapeutic intervention. In face of such an open perspective of basic and applied research, we review current evidence of lamin A/C interplay with signaling molecules, with particular emphasis on the lamin A-Akt interaction and on the biological significance of their relationship. J. Cell. Physiol. 220: 553–561, 2009. © 2009 Wiley-Liss, Inc.
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- 2009
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48. Ankrd2/ARPP is a novel Akt2 specific substrate andregulates myogenic differentiation upon cellular exposure to H(2)O(2)
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Lucio Cocco, Francesca Beretti, Sandra Marmiroli, Alberto Bavelloni, Vittoria Cenni, Nadir M. Maraldi, Francesca Tagliavini, Lucia Manzoli, Giovanna Lattanzi, Cenni V, Bavelloni A, Beretti F, Tagliavini F, Manzoli L, Lattanzi G, Maraldi NM, Cocco L, and Marmiroli S
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Gene isoform ,ANKRD2 ,Myoblasts, Skeletal ,Muscle Proteins ,AKT2 ,Biology ,Muscle Development ,Serine ,Mice ,Myocyte ,Animals ,Humans ,Phosphorylation ,Molecular Biology ,Protein kinase B ,Cell Nucleus ,Akt ,cell signaling ,Akt kinase ,Akt substrates ,muscle fiber ,ROS ,oxidative stress ,Ankrd2 ,Nuclear Proteins ,Cell Differentiation ,Cell Biology ,Hydrogen Peroxide ,Articles ,Oxidants ,Ankdr2 ,Molecular biology ,Signaling ,Cell biology ,Repressor Proteins ,Oxidative Stress ,Protein Transport ,PHOSPHOSUBSTRATES ,C2C12 ,Proto-Oncogene Proteins c-akt ,Protein Binding - Abstract
A proteomic-based search for novel substrates of Akt was undertaken in C2C12 murine muscle cells. Our data demonstrate that Akt isoform 2 phosphorylates Ankrd2 at Serine 99 in response to H2O2 stimuli, regulating muscle differentiation rate., Activation of Akt-mediated signaling pathways is crucial for survival, differentiation, and regeneration of muscle cells. A proteomic-based search for novel substrates of Akt was therefore undertaken in C2C12 murine muscle cells exploiting protein characterization databases in combination with an anti–phospho-Akt substrate antibody. A Scansite database search predicted Ankrd2 (Ankyrin repeat domain protein 2, also known as ARPP) as a novel substrate of Akt. In vitro and in vivo studies confirmed that Akt phosphorylates Ankrd2 at Ser-99. Moreover, by kinase assay with recombinant Akt1 and Akt2, as well as by single-isoform silencing, we demonstrated that Ankrd2 is a specific substrate of Akt2. Ankrd2 is typically found in skeletal muscle cells, where it mediates the transcriptional response to stress conditions. In an attempt to investigate the physiological implications of Ankrd2 phosphorylation by Akt2, we found that oxidative stress induced by H2O2 triggers this phosphorylation. Moreover, the forced expression of a phosphorylation-defective mutant form of Ankrd2 in C2C12 myoblasts promoted a faster differentiation program, implicating Akt-dependent phosphorylation at Ser-99 in the negative regulation of myogenesis in response to stress conditions.
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- 2011
49. A composite six bp in-frame deletion in the melanocortin 1 receptor (MC1R) gene is associated with the japanese brindling coat colour in rabbits (Oryctolagus Cuniculus)
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Michela Colombo, Ahmad Oulmouden, Stefania Dall'Olio, Emilio Scotti, Daniel Allain, Luca Fontanesi, Francesca Beretti, Séverine Deretz, Vincenzo Russo, Lionel Forestier, Fontanesi, Luca, Fontanesi L., Scotti E., Colombo M., Beretti F., Forestier L., Dall'Olio S., Deretz S., Russo V., Allain D., Oulmouden A., DIPROVAL, Alma Mater Studiorum University of Bologna (UNIBO), Unité de Génétique Moléculaire Animale (UMR GMA), Institut National de la Recherche Agronomique (INRA)-Université de Limoges (UNILIM), Génétique Expérimentale en Productions Animales (GEPA), Institut National de la Recherche Agronomique (INRA), Station d'Amélioration Génétique des Animaux (SAGA), Unité de Génétique Moléculaire Animale (UGMA), and Université de Limoges (UNILIM)-Institut National de la Recherche Agronomique (INRA)
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Coat ,lcsh:QH426-470 ,[SDV]Life Sciences [q-bio] ,Locus (genetics) ,Biology ,oryctolagus cuniculus ,03 medical and health sciences ,Black hair ,COAT COLOUR ,BREEDS ,RABBIT ,Genotype ,MC1R ,Genetics ,Animals ,Genetics(clinical) ,melanocortin ,Allele ,Hair Color ,gene ,Genetics (clinical) ,030304 developmental biology ,Dominance (genetics) ,Sequence Deletion ,0303 health sciences ,rabbit ,mc1r ,coat ,Base Sequence ,MUTATIONS ,0402 animal and dairy science ,Wild type ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,Molecular biology ,lcsh:Genetics ,Agouti Signaling Protein ,Rabbits ,Receptor, Melanocortin, Type 1 ,Melanocortin 1 receptor ,Research Article - Abstract
Background In the domestic rabbit (Oryctolagus cuniculus), classical genetic studies have identified five alleles at the Extension locus: ED (dominant black), ES (steel, weaker version of ED), E (wild type, normal extension of black), eJ(Japanese brindling, mosaic distribution of black and yellow) and e (non-extension of black, yellow/red with white belly). Sequencing almost the complete coding sequence (CDS) of the rabbit MC1R gene, we recently identified two in-frame deletions associated with dominant black (c.280_285del6; alleles ED or ES) and recessive red (c.304_333del30; allele e) coat colours. It remained to characterize the eJallele whose phenotypic effect is similar to the Orange and Sex-linked yellow loci of cat and Syrian hamster. Results We sequenced the whole CDS in 25 rabbits of different coat colours including 10 Japanese and 10 Rhinelander (tricolour) rabbits and identified another 6 bp-in frame deletion flanked by a G > A transition in 5' (c.[124G>A;125_130del6]) that was present in all animals with Japanese brindling coat colour and pattern. These mutations eliminate two amino acids in the first transmembrane domain and, in addition, cause an amino acid substitution at position 44 of the wild type sequence. Genotyping 371 rabbits of 31 breeds with different coat colour this allele (eJ) was present in homozygous state in Japanese, Rhinelander and Dutch tricolour rabbits only (except one albino rabbit). Rabbits with eJ/eJ genotype were non fixed at the non-agouti mutation we previously identified in the ASIP gene. Segregation in F1 and F2 families confirmed the order of dominance already determined by classical genetic experiments with a possible dose effect evident comparing eJ/eJ and eJ/e animals. MC1R mRNA was expressed in black hair skin regions only. Conclusions The c.[124A;125_130del6] allele may be responsible for a MC1R variant determining eumelanin production in the black areas. However, the mechanism determining the presence of both red and black hairs in the same animal seems more complex. Expression analyses of the c.[124A;125_130del6] allele suggest that MC1R transcription may be regulated epigenetically in rabbits with the Japanese brindling phenotype. Further studies are needed to clarify this issue.
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- 2010
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50. Evaluation of post mortem stability of porcine skeletal muscle RNA
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Vincenzo Russo, Francesca Beretti, Luca Fontanesi, Michela Colombo, Fontanesi L., Colombo M., Beretti F., and Russo V.
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GENE EXPRESSION ,PIG ,RNA STABILITY ,Skeletal muscle ,RNA ,Anatomy ,Biology ,Molecular biology ,18S ribosomal RNA ,Housekeeping gene ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,POST MORTEM ,Complementary DNA ,Agarose gel electrophoresis ,Gene expression ,medicine ,SKELETAL MUSCLE ,Ethidium bromide ,Food Science - Abstract
The objective of this study was to evaluate the effect of postmortem times on the quality of porcine skeletal muscle total RNA in order to consider the possibility to use postmortem material for gene expression analysis. Samples of Musculus semimembranosus were collected at 20 min, 2 h, 6 h, 24 h and 48 h postmortem from the left legs of four commercial heavy pigs. Total RNA was analysed by agarose gel electrophoresis stained with ethidium bromide and by microfluidic capillary electrophoresis on an Agilent 2100 Bioanalyzer instrument obtaining 28S:18S rRNA peak ratios and RIN values. The average RIN values of the analysed samples were 7.45 ± 0.13, 7.43 ± 0.15, 7.45 ± 0.10, 7.33 ± 0.15 and 3.95 ± 0.58 for the same postmortem times, respectively, indicating that RNA degradation was present at 48 h postmortem . In a similar experiment, carried out by other authors on beef cattle muscle total RNA extracted at different postmortem times, RNA was stable up to 8 days after death as indicated by intact 28S and 18S rRNA bands. Thus, differences among species or other environmental factors might affect the level of RNA degradation. In the porcine postmortem samples, qualitative assessment of GAPDH transcripts by PCR amplification of different cDNA fragments indicated that postmortem stages did not affect the possibility of analysing this housekeeping gene. Thus, postmortem porcine skeletal muscle can be an useful tissue to obtain gene expression based information.
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- 2008
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