174 results on '"Berland, S."'
Search Results
2. Refining the 9q34.3 microduplication syndrome reveals mild neurodevelopmental features associated with a distinct global DNA methylation profile.
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Rots, D., Rooney, K., Relator, R., Kerkhof, J., McConkey, H., Pfundt, R.P., Marcelis, C.L.M., Willemsen, M.H., Hagen, J.M. van, Zwijnenburg, P., Alders, M., Õunap, K., Reimand, T., Fjodorova, O., Berland, S., Liahjell, E.B., Bojovic, O., Kriek, M., Ruivenkamp, C., Bonati, M.T., Brunner, H.G., Vissers, L.E.L.M., Sadikovic, B., Kleefstra, T., Rots, D., Rooney, K., Relator, R., Kerkhof, J., McConkey, H., Pfundt, R.P., Marcelis, C.L.M., Willemsen, M.H., Hagen, J.M. van, Zwijnenburg, P., Alders, M., Õunap, K., Reimand, T., Fjodorova, O., Berland, S., Liahjell, E.B., Bojovic, O., Kriek, M., Ruivenkamp, C., Bonati, M.T., Brunner, H.G., Vissers, L.E.L.M., Sadikovic, B., and Kleefstra, T.
- Abstract
Contains fulltext : 306427.pdf (Publisher’s version ) (Open Access), Precise regulation of gene expression is important for correct neurodevelopment. 9q34.3 deletions affecting the EHMT1 gene result in a syndromic neurodevelopmental disorder named Kleefstra syndrome. In contrast, duplications of the 9q34.3 locus encompassing EHMT1 have been suggested to cause developmental disorders, but only limited information has been available. We have identified 15 individuals from 10 unrelated families, with 9q34.3 duplications <1.5 Mb in size, encompassing EHMT1 entirely. Clinical features included mild developmental delay, mild intellectual disability or learning problems, autism spectrum disorder, and behavior problems. The individuals did not consistently display dysmorphic features, congenital anomalies, or growth abnormalities. DNA methylation analysis revealed a weak DNAm profile for the cases with 9q34.3 duplication encompassing EHMT1, which could segregate the majority of the affected cases from controls. This study shows that individuals with 9q34.3 duplications including EHMT1 gene present with mild non-syndromic neurodevelopmental disorders and DNA methylation changes different from Kleefstra syndrome., 01 juni 2024
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- 2024
3. Changes in protein size distribution during wheat flour cake processing
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Dewaest, M., Villemejane, C., Berland, S., Michon, C., Verel, A., and Morel, M.-H.
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- 2017
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4. LRFN5 locus structure is associated with autism and influenced by the sex of the individual and locus conversions
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Lybaek, H., Robson, M., Leeuw, N. de, Hehir-Kwa, J.Y., Jeffries, A., Haukanes, B.I., Berland, S., Bruijn, D.R. de, Mundlos, S., Spielmann, M., Houge, G., Lybaek, H., Robson, M., Leeuw, N. de, Hehir-Kwa, J.Y., Jeffries, A., Haukanes, B.I., Berland, S., Bruijn, D.R. de, Mundlos, S., Spielmann, M., and Houge, G.
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Item does not contain fulltext, LRFN5 is a regulator of synaptic development and the only gene in a 5.4 Mb mammalian-specific conserved topologically associating domain (TAD); the LRFN5 locus. An association between locus structural changes and developmental delay (DD) and/or autism was suggested by several cases in DECIPHER and own records. More significantly, we found that maternal inheritance of a specific LRFN5 locus haplotype segregated with an identical type of autism in distantly related males. This autism-susceptibility haplotype had a specific TAD pattern. We also found a male/female quantitative difference in the amount histone-3-lysine-9-associated chromatin around the LRFN5 gene itself (p < 0.01), possibly related to the male-restricted autism susceptibility. To better understand locus behavior, the prevalence of a 60 kb deletion polymorphism was investigated. Surprisingly, in three cohorts of individuals with DD (n = 8757), the number of deletion heterozygotes was 20%-26% lower than expected from Hardy-Weinberg equilibrium. This suggests allelic interaction, also because the conversions from heterozygosity to wild-type or deletion homozygosity were of equal magnitudes. Remarkably, in a control group of medical students (n = 1416), such conversions were three times more common (p = 0.00001), suggesting a regulatory role of this allelic interaction. Taken together, LRFN5 regulation appears unusually complex, and LRFN5 dysregulation could be an epigenetic cause of autism. LAY SUMMARY: LRFN5 is involved with communication between brain cells. The gene sits alone in a huge genomic niche, called the LRFN5 locus, of complex structure and high mammalian conservation. We have found that a specific locus structure increases autism susceptibility in males, but we do not yet know how common this epigenetic cause of autism is. It is, however, a cause that potentially could explain why higher-functioning autism is more common in males than females.
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- 2022
5. Truncating and zinc-finger variants in GLI2 are associated with hypopituitarism
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Corder, M.L., Berland, S., Førsvoll, J.A., Banerjee, I., Murray, P., Bratland, E., Gokhale, D., Houge, G., Douzgou, S., Corder, M.L., Berland, S., Førsvoll, J.A., Banerjee, I., Murray, P., Bratland, E., Gokhale, D., Houge, G., and Douzgou, S.
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Variants in transcription factor GLI2 have been associated with hypopituitarism and structural brain abnormalities, occasionally including holoprosencephaly (HPE). Substantial phenotypic variability and nonpenetrance have been described, posing difficulties in the counseling of affected families. We present three individuals with novel likely pathogenic GLI2 variants, two with truncating and one with a de novo missense variant p.(Ser548Leu), and review the literature for comprehensive phenotypic descriptions of individuals with confirmed pathogenic (a) intragenic GLI2 variants and (b) chromosome 2q14.2 deletions encompassing only GLI2. We show that most of the 31 missense variants previously reported as pathogenic are likely benign or, at most, low-risk variants. Four Zn-finger variants: p.(Arg479Gly), p.(Arg516Pro), p.(Gly518Lys), and p.(Tyr575His) were classified as likely pathogenic, and three other variants as possibly pathogenic: p.(Pro253Ser), p.(Ala593Val), and p.(Pro1243Leu). We analyze the phenotypic descriptions of 60 individuals with pathogenic GLI2 variants and evidence a morbidity spectrum that includes hypopituitarism (58%), HPE (6%) or other brain structure abnormalities (15%), orofacial clefting (17%) and dysmorphic facial features (35%). We establish that truncating and Zn-finger variants in GLI2 are associated with a high risk of hypopituitarism, and that a solitary median maxillary central incisor is part of the GLI2-related phenotypic variability. The most prevalent phenotypic feature is post-axial polydactyly (65%) which is also the mildest phenotypic expression of the condition, reported in many parents of individuals with systemic findings. Our approach clarifies clinical risks and the important messages to discuss in counseling for a pathogenic GLI2 variant.
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- 2022
6. Genotype-phenotype correlations and novel molecular insights into the DHX30-associated neurodevelopmental disorders
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Mannucci, I., Dang, N.D.P., Huber, H, Murry, J.B., Abramson, J., Althoff, T., Banka, S., Baynam, G., Bearden, D., Beleza-Meireles, A., Benke, P.J., Berland, S., Bierhals, T., Bilan, F., Bindoff, Laurence, Braathen, G.J., Busk, O.L., Chenbhanich, J., Denecke, J., Escobar, L.F., Estes, C., Fleischer, J., Groepper, D., Haaxma, C.A., Hempel, M., Holler-Managan, Y., Houge, G., Jackson, A., Kellogg, L., Keren, B., Kiraly-Borri, C., Kraus, C., Kubisch, C., Guyader, G. Le, Ljungblad, U.W., Brenman, L.M., Martinez-Agosto, J.A., Might, M., Miller, D.T., Minks, K.Q., Moghaddam, B., Nava, C., Nelson, S.F., Parant, J.M., Prescott, T., Rajabi, F., Randrianaivo, H., Reiter, S.F., Schuurs-Hoeijmakers, J.H.M., Shieh, P.B., Slavotinek, A., Smithson, S., Stegmann, A.P.A., Tomczak, K., Tveten, K., Wang, J, Whitlock, J.H., Zweier, C., McWalter, K., Juusola, J., Quintero-Rivera, F., Fischer, U., Yeo, N.C., Kreienkamp, H.J., Lessel, D., Mannucci, I., Dang, N.D.P., Huber, H, Murry, J.B., Abramson, J., Althoff, T., Banka, S., Baynam, G., Bearden, D., Beleza-Meireles, A., Benke, P.J., Berland, S., Bierhals, T., Bilan, F., Bindoff, Laurence, Braathen, G.J., Busk, O.L., Chenbhanich, J., Denecke, J., Escobar, L.F., Estes, C., Fleischer, J., Groepper, D., Haaxma, C.A., Hempel, M., Holler-Managan, Y., Houge, G., Jackson, A., Kellogg, L., Keren, B., Kiraly-Borri, C., Kraus, C., Kubisch, C., Guyader, G. Le, Ljungblad, U.W., Brenman, L.M., Martinez-Agosto, J.A., Might, M., Miller, D.T., Minks, K.Q., Moghaddam, B., Nava, C., Nelson, S.F., Parant, J.M., Prescott, T., Rajabi, F., Randrianaivo, H., Reiter, S.F., Schuurs-Hoeijmakers, J.H.M., Shieh, P.B., Slavotinek, A., Smithson, S., Stegmann, A.P.A., Tomczak, K., Tveten, K., Wang, J, Whitlock, J.H., Zweier, C., McWalter, K., Juusola, J., Quintero-Rivera, F., Fischer, U., Yeo, N.C., Kreienkamp, H.J., and Lessel, D.
- Abstract
Contains fulltext : 245060.pdf (Publisher’s version ) (Open Access), BACKGROUND: We aimed to define the clinical and variant spectrum and to provide novel molecular insights into the DHX30-associated neurodevelopmental disorder. METHODS: Clinical and genetic data from affected individuals were collected through Facebook-based family support group, GeneMatcher, and our network of collaborators. We investigated the impact of novel missense variants with respect to ATPase and helicase activity, stress granule (SG) formation, global translation, and their effect on embryonic development in zebrafish. SG formation was additionally analyzed in CRISPR/Cas9-mediated DHX30-deficient HEK293T and zebrafish models, along with in vivo behavioral assays. RESULTS: We identified 25 previously unreported individuals, ten of whom carry novel variants, two of which are recurrent, and provide evidence of gonadal mosaicism in one family. All 19 individuals harboring heterozygous missense variants within helicase core motifs (HCMs) have global developmental delay, intellectual disability, severe speech impairment, and gait abnormalities. These variants impair the ATPase and helicase activity of DHX30, trigger SG formation, interfere with global translation, and cause developmental defects in a zebrafish model. Notably, 4 individuals harboring heterozygous variants resulting either in haploinsufficiency or truncated proteins presented with a milder clinical course, similar to an individual harboring a de novo mosaic HCM missense variant. Functionally, we established DHX30 as an ATP-dependent RNA helicase and as an evolutionary conserved factor in SG assembly. Based on the clinical course, the variant location, and type we establish two distinct clinical subtypes. DHX30 loss-of-function variants cause a milder phenotype whereas a severe phenotype is caused by HCM missense variants that, in addition to the loss of ATPase and helicase activity, lead to a detrimental gain-of-function with respect to SG formation. Behavioral characterization of dhx30-deficient
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- 2021
7. Genetic Dominant Variants in STUB1, Segregating in Families with SCA48, Display In Vitro Functional Impairments Indistinctive from Recessive Variants Associated with SCAR16
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Pakdaman, Y, Berland, S, Bustad, HJ, Erdal, S, Thompson, BA, James, PA, Power, KN, Ellingsen, S, Krooni, M, Berge, LI, Sexton, A, Bindoff, LA, Knappskog, PM, Johansson, S, Aukrust, I, Pakdaman, Y, Berland, S, Bustad, HJ, Erdal, S, Thompson, BA, James, PA, Power, KN, Ellingsen, S, Krooni, M, Berge, LI, Sexton, A, Bindoff, LA, Knappskog, PM, Johansson, S, and Aukrust, I
- Abstract
Variants in STUB1 cause both autosomal recessive (SCAR16) and dominant (SCA48) spinocerebellar ataxia. Reports from 18 STUB1 variants causing SCA48 show that the clinical picture includes later-onset ataxia with a cerebellar cognitive affective syndrome and varying clinical overlap with SCAR16. However, little is known about the molecular properties of dominant STUB1 variants. Here, we describe three SCA48 families with novel, dominantly inherited STUB1 variants (p.Arg51_Ile53delinsProAla, p.Lys143_Trp147del, and p.Gly249Val). All the patients developed symptoms from 30 years of age or later, all had cerebellar atrophy, and 4 had cognitive/psychiatric phenotypes. Investigation of the structural and functional consequences of the recombinant C-terminus of HSC70-interacting protein (CHIP) variants was performed in vitro using ubiquitin ligase activity assay, circular dichroism assay and native polyacrylamide gel electrophoresis. These studies revealed that dominantly and recessively inherited STUB1 variants showed similar biochemical defects, including impaired ubiquitin ligase activity and altered oligomerization properties of the CHIP. Our findings expand the molecular understanding of SCA48 but also mean that assumptions concerning unaffected carriers of recessive STUB1 variants in SCAR16 families must be re-evaluated. More investigations are needed to verify the disease status of SCAR16 heterozygotes and elucidate the molecular relationship between SCA48 and SCAR16 diseases.
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- 2021
8. De novo variants in MED12 cause X-linked syndromic neurodevelopmental disorders in 18 females
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Polla, DL, Bhoj, EJ, Verheij, JBGM, Klein Wassink-Ruiter, JS, Reis, A, Deshpande, C, Gregor, A, Hill-Karfe, K, Vulto-van Silfhout, AT, Pfundt, R, Bongers, EMHF, Hakonarson, H, Berland, S, Gradek, G, Banka, S, Chandler, K, Gompertz, L, Huffels, SC, Stumpel, CTRM, Wennekes, R, Stegmann, APA, Reardon, W, Leenders, EKSM, de Vries, BBA, Li D, Zackai, E, Ragge, Nicole, Lynch, SA, Cuddapah, S, van Bokhoven, H, Zweier, C, de Brouwer, APM, Polla, DL, Bhoj, EJ, Verheij, JBGM, Klein Wassink-Ruiter, JS, Reis, A, Deshpande, C, Gregor, A, Hill-Karfe, K, Vulto-van Silfhout, AT, Pfundt, R, Bongers, EMHF, Hakonarson, H, Berland, S, Gradek, G, Banka, S, Chandler, K, Gompertz, L, Huffels, SC, Stumpel, CTRM, Wennekes, R, Stegmann, APA, Reardon, W, Leenders, EKSM, de Vries, BBA, Li D, Zackai, E, Ragge, Nicole, Lynch, SA, Cuddapah, S, van Bokhoven, H, Zweier, C, and de Brouwer, APM
- Abstract
Purpose. MED12 is a subunit of the Mediator multiprotein complex with a central role in RNA polymerase II transcription and regulation of cell growth, development, and differentiation. This might underlie the variable phenotypes in males carrying missense variants in MED12, including X-linked recessive Ohdo, Lujan, and FG syndromes. Methods. By international matchmaking we assembled variant and clinical data on 18 females presenting with variable neurodevelopmental disorders (NDDs) and harboring de novo variants in MED12. Results. Five nonsense variants clustered in the C-terminal region, two splice variants were found in the same exon 8 splice acceptor site, and 11 missense variants were distributed over the gene/protein. Protein truncating variants were associated with a severe, syndromic phenotype consisting of intellectual disability (ID), facial dysmorphism, short stature, skeletal abnormalities, feeding difficulties, and variable other abnormalities. De novo missense variants were associated with a less specific, but homogeneous phenotype including severe ID, autistic features, limited speech and variable other anomalies, overlapping both with females with truncating variants as well as males with missense variants. Conclusion. We establish de novo truncating variants in MED12 as causative for a distinct NDD and de novo missense variants as causative for a severe, less specific NDD in females.
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- 2020
9. The in vitro osteoclastic degradation of nacre
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Duplat, D., Chabadel, A., Gallet, M., Berland, S., Bédouet, L., Rousseau, M., Kamel, S., Milet, C., Jurdic, P., Brazier, M., and Lopez, E.
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- 2007
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10. Calorimetric and rheological properties of wheat flour suspensions and doughs: Effects of wheat types and milling procedure
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Berland, S., Relkin, P., and Launay, B.
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- 2003
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11. Effect of water soluble extract of nacre (Pinctada maxima) on alkaline phosphatase activity and Bcl-2 expression in primary cultured osteoblasts from neonatal rat calvaria
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Moutahir-belqasmi, F., Balmain, N., Lieberrher, M., Borzeix, S., Berland, S., Barthelemy, M., Peduzzi, J., Milet, C., and Lopez, E.
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- 2001
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12. Peer Review #1 of "ProminTools: shedding light on proteins of unknown function in biomineralization with user friendly tools illustrated using mollusc shell matrix protein sequences (v0.1)"
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Berland, S, additional
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- 2020
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13. Nacre/bone interface changes in durable nacre endosseous implants in sheep
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Berland, S., Delattre, O., Borzeix, S., Catonné, Y., and Lopez, E.
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- 2005
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14. Use of mother of pearl as a bone substitute - Experimental study in sheep
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Delattre, O., Catonne, Y., Berland, S., Borzeix, S., and Lopez, E.
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- 1997
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15. CTCF variants in 39 individuals with a variable neurodevelopmental disorder broaden the mutational and clinical spectrum
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Konrad, E. D. (Enrico D. H.), Nardini, N. (Niels), Caliebe, A. (Almuth), Nagel, I. (Inga), Young, D. (Dana), Horvath, G. (Gabriella), Santoro, S. L. (Stephanie L.), Shuss, C. (Christine), Ziegler, A. (Alban), Bonneau, D. (Dominique), Kempers, M. (Marlies), Pfundt, R. (Rolph), Legius, E. (Eric), Bouman, A. (Arjan), Stuurman, K. E. (Kyra E.), Õunap, K. (Katrin), Pajusalu, S. (Sander), Wojcik, M. H. (Monica H.), Vasileiou, G. (Georgia), Le Guyader, G. (Gwenaël), Schnelle, H. M. (Hege M.), Berland, S. (Siren), Zonneveld-Huijssoon, E. (Evelien), Kersten, S. (Simone), Gupta, A. (Aditi), Blackburn, P. R. (Patrick R.), Ellingson, M. S. (Marissa S.), Ferber, M. J. (Matthew J.), Dhamija, R. (Radhika), Klee, E. W. (Eric W.), McEntagart, M. (Meriel), Lichtenbelt, K. D. (Klaske D.), Kenney, A. (Amy), Vergano, S. A. (Samantha A.), Jamra, R. A. (Rami Abou), Platzer, K. (Konrad), Pierpont, M. E. (Mary Ella), Khattar, D. (Divya), Hopkin, R. J. (Robert J.), Martin, R. J. (Richard J.), Jongmans, M. C. (Marjolijn C. J.), Chang, V. Y. (Vivian Y.), Martinez-Agosto, J. A. (Julian A.), Kuismin, O. (Outi), Kurki, M. I. (Mitja I.), Pietiläinen, O. (Olli), Palotie, A. (Aarno), Maarup, T. J. (Timothy J.), Johnson, D. S. (Diana S.), Venborg Pedersen, K. (Katja), Laulund, L. W. (Lone W.), Lynch, S. A. (Sally A.), Blyth, M. (Moira), Prescott, K. (Katrina), Canham, N. (Natalie), Ibitoye, R. (Rita), Brilstra, E. H. (Eva H.), Shinawi, M. (Marwan), Fassi, E. (Emily), Study, D. (DDD), Sticht, H. (Heinrich), Gregor, A. (Anne), Van Esch, H. (Hilde), and Zweier, C. (Christiane)
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Drosophila melanogaster ,intellectual disability ,neurodevelopmental disorders ,CTCF ,chromatin organization - Abstract
Purpose: Pathogenic variants in the chromatin organizer CTCF were previously reported in seven individuals with a neurodevelopmental disorder (NDD). Methods: Through international collaboration we collected data from 39 subjects with variants in CTCF. We performed transcriptome analysis on RNA from blood samples and utilized Drosophila melanogaster to investigate the impact of Ctcf dosage alteration on nervous system development and function. Results: The individuals in our cohort carried 2 deletions, 8 likely gene-disruptive, 2 splice-site, and 20 different missense variants, most of them de novo. Two cases were familial. The associated phenotype was of variable severity extending from mild developmental delay or normal IQ to severe intellectual disability. Feeding difficulties and behavioral abnormalities were common, and variable other findings including growth restriction and cardiac defects were observed. RNA-sequencing in five individuals identified 3828 deregulated genes enriched for known NDD genes and biological processes such as transcriptional regulation. Ctcf dosage alteration in Drosophila resulted in impaired gross neurological functioning and learning and memory deficits. Conclusion: We significantly broaden the mutational and clinical spectrum ofCTCF-associated NDDs. Our data shed light onto the functional role of CTCF by identifying deregulated genes and show that Ctcf alterations result in nervous system defects in Drosophila.
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- 2019
16. CTCF variants in 39 individuals with a variable neurodevelopmental disorder broaden the mutational and clinical spectrum
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Konrad, E.D.H., Nardini, N., Caliebe, A., Nagel, I., Young, D., Horvath, G., Santoro, S.L., Shuss, C., Ziegler, A., Bonneau, D., Kempers, M.J.E., Pfundt, R.P., Legius, E., Bouman, A., Stuurman, K.E., Ounap, K., Pajusalu, S., Wojcik, M.H., Vasileiou, G., Guyader, G. Le, Schnelle, H.M., Berland, S., Zonneveld-Huijssoon, E., Kersten, S., Gupta, A., Blackburn, P.R., Ellingson, M.S., Ferber, M.J., Dhamija, R., Klee, E.W., McEntagart, M., Lichtenbelt, K.D., Kenney, A., Vergano, Samantha A., Jamra, R. Abou, Platzer, K., Pierpont, M. Ella, Khattar, D., Hopkin, R.J., Martin, R.J., Jongmans, M.C.J., Chang, V.Y., Martinez-Agosto, J.A., Kuismin, O., Kurki, M.I., Pietilainen, O., Palotie, A., Maarup, T.J., Johnson, D.S., Pedersen, K., Laulund, L.W., Lynch, S.A., Blyth, M., Prescott, K., Canham, N., Ibitoye, R., Brilstra, E.H., Shinawi, M., Fassi, E., Sticht, H., Gregor, A., Esch, H. Van, Zweier, C., Konrad, E.D.H., Nardini, N., Caliebe, A., Nagel, I., Young, D., Horvath, G., Santoro, S.L., Shuss, C., Ziegler, A., Bonneau, D., Kempers, M.J.E., Pfundt, R.P., Legius, E., Bouman, A., Stuurman, K.E., Ounap, K., Pajusalu, S., Wojcik, M.H., Vasileiou, G., Guyader, G. Le, Schnelle, H.M., Berland, S., Zonneveld-Huijssoon, E., Kersten, S., Gupta, A., Blackburn, P.R., Ellingson, M.S., Ferber, M.J., Dhamija, R., Klee, E.W., McEntagart, M., Lichtenbelt, K.D., Kenney, A., Vergano, Samantha A., Jamra, R. Abou, Platzer, K., Pierpont, M. Ella, Khattar, D., Hopkin, R.J., Martin, R.J., Jongmans, M.C.J., Chang, V.Y., Martinez-Agosto, J.A., Kuismin, O., Kurki, M.I., Pietilainen, O., Palotie, A., Maarup, T.J., Johnson, D.S., Pedersen, K., Laulund, L.W., Lynch, S.A., Blyth, M., Prescott, K., Canham, N., Ibitoye, R., Brilstra, E.H., Shinawi, M., Fassi, E., Sticht, H., Gregor, A., Esch, H. Van, and Zweier, C.
- Abstract
Contains fulltext : 215582.pdf (publisher's version ) (Open Access), PURPOSE: Pathogenic variants in the chromatin organizer CTCF were previously reported in seven individuals with a neurodevelopmental disorder (NDD). METHODS: Through international collaboration we collected data from 39 subjects with variants in CTCF. We performed transcriptome analysis on RNA from blood samples and utilized Drosophila melanogaster to investigate the impact of Ctcf dosage alteration on nervous system development and function. RESULTS: The individuals in our cohort carried 2 deletions, 8 likely gene-disruptive, 2 splice-site, and 20 different missense variants, most of them de novo. Two cases were familial. The associated phenotype was of variable severity extending from mild developmental delay or normal IQ to severe intellectual disability. Feeding difficulties and behavioral abnormalities were common, and variable other findings including growth restriction and cardiac defects were observed. RNA-sequencing in five individuals identified 3828 deregulated genes enriched for known NDD genes and biological processes such as transcriptional regulation. Ctcf dosage alteration in Drosophila resulted in impaired gross neurological functioning and learning and memory deficits. CONCLUSION: We significantly broaden the mutational and clinical spectrum ofCTCF-associated NDDs. Our data shed light onto the functional role of CTCF by identifying deregulated genes and show that Ctcf alterations result in nervous system defects in Drosophila.
- Published
- 2019
17. CTCF variants in 39 individuals with a variable neurodevelopmental disorder broaden the mutational and clinical spectrum
- Author
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Konrad, E.D.H. (Enrico D. H.), Nardini, N. (Niels), Caliebe, A. (Almuth), Nagel, I. (Inga), Young, D. (Dana), Horvath, G. (Gabriella), Santoro, S.L. (Stephanie L.), Shuss, C. (Christine), Ziegler, A. (Alban), Bonneau, D. (Dominique), Kempers, M.J.E. (Marlies), Pfundt, R. (Rolph), Legius, E. (Eric), Bouman, A. (Arjan), Stuurman, K.E. (Kyra E.), Õunap, K. (Katrin), Pajusalu, S. (Sander), Wojcik, M.H. (Monica H.), Vasileiou, G. (Georgia), Le Guyader, G. (Gwenaël), Schnelle, H.M. (Hege M.), Berland, S. (Siren), Zonneveld-Huijssoon, E. (Evelien), Kersten, S. (Simone), Gupta, A. (Aditi), Blackburn, P.R. (Patrick R.), Ellingson, M.S. (Marissa S.), Ferber, M.J. (Matthew J.), Dhamija, R. (Radhika), Klee, E.W. (Eric W.), McEntagart, M. (Meriel), Lichtenbelt, K.D. (Klaske), Kenney, A. (Amy), Vergano, S.A. (Samantha A.), Abou Jamra, R. (Rami), Platzer, K. (Konrad), Ella Pierpont, M. (Mary), Khattar, D. (Divya), Hopkin, R., Martin, R.J. (Richard J.), Jongmans, M.C.J. (Marjolijn), Chang, V.Y. (Vivian Y.), Martinez-Agosto, J.A. (Julian A.), Kuismin, O. (Outi), Kurki, M.I. (Mitja I.), Pietiläinen, O.P.H. (Olli), Palotie, A. (Aarno), Maarup, T.J. (Timothy J.), Johnson, D. (David), Venborg Pedersen, K. (Katja), Laulund, L.W. (Lone W.), Lynch, S.A. (Sally A.), Blyth, M. (Moira), Prescott, K. (Katrina), Canham, N. (Natalie), Ibitoye, R. (Rita), Brilstra, E.H. (Eva H.), Shinawi, M. (Marwan), Fassi, E. (Emily), Sticht, H. (Heinrich), Gregor, A. (Anne), Esch, H. (Hilde) van, Zweier, C. (Christiane), Konrad, E.D.H. (Enrico D. H.), Nardini, N. (Niels), Caliebe, A. (Almuth), Nagel, I. (Inga), Young, D. (Dana), Horvath, G. (Gabriella), Santoro, S.L. (Stephanie L.), Shuss, C. (Christine), Ziegler, A. (Alban), Bonneau, D. (Dominique), Kempers, M.J.E. (Marlies), Pfundt, R. (Rolph), Legius, E. (Eric), Bouman, A. (Arjan), Stuurman, K.E. (Kyra E.), Õunap, K. (Katrin), Pajusalu, S. (Sander), Wojcik, M.H. (Monica H.), Vasileiou, G. (Georgia), Le Guyader, G. (Gwenaël), Schnelle, H.M. (Hege M.), Berland, S. (Siren), Zonneveld-Huijssoon, E. (Evelien), Kersten, S. (Simone), Gupta, A. (Aditi), Blackburn, P.R. (Patrick R.), Ellingson, M.S. (Marissa S.), Ferber, M.J. (Matthew J.), Dhamija, R. (Radhika), Klee, E.W. (Eric W.), McEntagart, M. (Meriel), Lichtenbelt, K.D. (Klaske), Kenney, A. (Amy), Vergano, S.A. (Samantha A.), Abou Jamra, R. (Rami), Platzer, K. (Konrad), Ella Pierpont, M. (Mary), Khattar, D. (Divya), Hopkin, R., Martin, R.J. (Richard J.), Jongmans, M.C.J. (Marjolijn), Chang, V.Y. (Vivian Y.), Martinez-Agosto, J.A. (Julian A.), Kuismin, O. (Outi), Kurki, M.I. (Mitja I.), Pietiläinen, O.P.H. (Olli), Palotie, A. (Aarno), Maarup, T.J. (Timothy J.), Johnson, D. (David), Venborg Pedersen, K. (Katja), Laulund, L.W. (Lone W.), Lynch, S.A. (Sally A.), Blyth, M. (Moira), Prescott, K. (Katrina), Canham, N. (Natalie), Ibitoye, R. (Rita), Brilstra, E.H. (Eva H.), Shinawi, M. (Marwan), Fassi, E. (Emily), Sticht, H. (Heinrich), Gregor, A. (Anne), Esch, H. (Hilde) van, and Zweier, C. (Christiane)
- Abstract
Purpose: Pathogenic variants in the chromatin organizer CTCF were previously reported in seven individuals with a neurodevelopmental disorder (NDD). Methods: Through international collaboration we collected data from 39 subjects with variants in CTCF. We performed transcriptome analysis on RNA from blood samples and utilized Drosophila melanogaster to investigate the impact of Ctcf dosage alteration on nervous system development and function. Results: The individuals in our cohort carried 2 deletions, 8 likely gene-disruptive, 2 splice-site, and 20 different missense variants, most of them de novo. Two cases were familial. The associated phenotype was of variable severity extending from mild developmental delay or normal IQ to severe intellectual disability. Feeding difficulties and behavioral abnormalities were common, and variable other findings including growth restriction and cardiac defects were observed. RNA-sequencing in five individuals identified 3828 deregulated genes enriched for known NDD genes and biological processes such as transcriptional regulation. Ctcf dosage alteration in Drosophila resulted in impaired gross neurological functioning and learning and memory deficits. Conclusion: We significantly broaden the mutational and clinical spectrum of CTCF-associated NDDs. Our data shed light onto the functional role of CTCF by identifying deregulated genes and show that Ctcf alterations result in nervous system defects in Drosophila.
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- 2019
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18. HUWE1 variants cause dominant X-linked intellectual disability: a clinical study of 21 patients
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Moortgat, S., Berland, S., Aukrust, Ingvild, Maystadt, I., Baker, L.C., Benoit, V., Gardeitchik, T., Pfundt, R.P., Low, Karen J., Newbury-Ecob, R., Moortgat, S., Berland, S., Aukrust, Ingvild, Maystadt, I., Baker, L.C., Benoit, V., Gardeitchik, T., Pfundt, R.P., Low, Karen J., and Newbury-Ecob, R.
- Abstract
Contains fulltext : 183870.pdf (publisher's version ) (Closed access)
- Published
- 2018
19. Stimulation of rat cutaneous fibroblasts and their synthetic activity by implants of powdered nacre (mother of pearl)
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Lopez, E., Faou, A.Le, Borzeix, S., and Berland, S.
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- 2000
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20. Stimulation of bone marrow cells and bone formation by nacre: in vivo and in vitro studies
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Lamghari, M, Almeida, M.J, Berland, S, Huet, H, Laurent, A, Milet, C, and Lopez, E
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- 1999
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21. Interface between bone and nacre implants in sheep
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Atlan, G., Delattre, O., Berland, S., LeFaou, A., Nabias, G., Cot, D., and Lopez, E.
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- 1999
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22. De novo variants in MED12cause X-linked syndromic neurodevelopmental disorders in 18 females
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Polla, D.L., Bhoj, E.J., Verheij, J.B.G.M., Wassink-Ruiter, J.S. Klein, Reis, A., Deshpande, C., Gregor, A., Hill-Karfe, K., Silfhout, A.T. Vulto-van, Pfundt, R., Bongers, E.M.H.F., Hakonarson, H., Berland, S., Gradek, G., Banka, S., Chandler, K., Gompertz, L., Huffels, S.C., Stumpel, C.T.R.M., Wennekes, R., Stegmann, A.P.A., Reardon, W., Leenders, E.K.S.M., de Vries, B.B.A., Li, D., Zackai, E., Ragge, N., Lynch, S.A., Cuddapah, S., van Bokhoven, H., Zweier, C., and de Brouwer, A.P.M.
- Abstract
MED12 is a subunit of the Mediator multiprotein complex with a central role in RNA polymerase II transcription and regulation of cell growth, development, and differentiation. This might underlie the variable phenotypes in males carrying missense variants in MED12, including X-linked recessive Ohdo, Lujan, and FG syndromes.
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- 2021
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23. EPHB4 kinase-inactivating mutations cause autosomal dominant lymphatic-related hydrops fetalis
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Martin-Almedina, S., Martinez-Corral, I., Holdhus, R., Vicente, A., Fotiou, E., Lin, S., Petersen, K., Simpson, M.A., Hoischen, A., Gilissen, C.F., Jeffery, H., Atton, G., Karapouliou, C., Brice, G., Gordon, K., Wiseman, J.W., Wedin, M., Rockson, S.G., Jeffery, S., Mortimer, P.S., Snyder, M.P., Berland, S., Mansour, S., Makinen, T., Ostergaard, P., Martin-Almedina, S., Martinez-Corral, I., Holdhus, R., Vicente, A., Fotiou, E., Lin, S., Petersen, K., Simpson, M.A., Hoischen, A., Gilissen, C.F., Jeffery, H., Atton, G., Karapouliou, C., Brice, G., Gordon, K., Wiseman, J.W., Wedin, M., Rockson, S.G., Jeffery, S., Mortimer, P.S., Snyder, M.P., Berland, S., Mansour, S., Makinen, T., and Ostergaard, P.
- Abstract
Contains fulltext : 167752.pdf (Publisher’s version ) (Open Access), Hydrops fetalis describes fluid accumulation in at least 2 fetal compartments, including abdominal cavities, pleura, and pericardium, or in body tissue. The majority of hydrops fetalis cases are nonimmune conditions that present with generalized edema of the fetus, and approximately 15% of these nonimmune cases result from a lymphatic abnormality. Here, we have identified an autosomal dominant, inherited form of lymphatic-related (nonimmune) hydrops fetalis (LRHF). Independent exome sequencing projects on 2 families with a history of in utero and neonatal deaths associated with nonimmune hydrops fetalis uncovered 2 heterozygous missense variants in the gene encoding Eph receptor B4 (EPHB4). Biochemical analysis determined that the mutant EPHB4 proteins are devoid of tyrosine kinase activity, indicating that loss of EPHB4 signaling contributes to LRHF pathogenesis. Further, inactivation of Ephb4 in lymphatic endothelial cells of developing mouse embryos led to defective lymphovenous valve formation and consequent subcutaneous edema. Together, these findings identify EPHB4 as a critical regulator of early lymphatic vascular development and demonstrate that mutations in the gene can cause an autosomal dominant form of LRHF that is associated with a high mortality rate.
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- 2016
24. Further evidence that de novo missense and truncating variants in ZBTB18 cause intellectual disability with variable features
- Author
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Cohen, J.S., primary, Srivastava, S., additional, Farwell Hagman, K.D., additional, Shinde, D.N., additional, Huether, R., additional, Darcy, D., additional, Wallerstein, R., additional, Houge, G., additional, Berland, S., additional, Monaghan, K.G., additional, Poretti, A., additional, Wilson, A.L., additional, Chung, W.K., additional, and Fatemi, A., additional
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- 2016
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25. B56delta-related protein phosphatase 2A dysfunction identified in patients with intellectual disability
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Houge, G., Haesen, D., Vissers, L.E.L.M., Mehta, S., Parker, M.J., Wright, M., Vogt, J., McKee, S., Tolmie, J.L., Cordeiro, N., Kleefstra, T., Willemsen, M.H., Reijnders, M.R.F., Berland, S., Hayman, E., Lahat, E., Brilstra, E.H., Gassen, K.L. van, Zonneveld-Huijssoon, E., Bie, C.I. De, Hoischen, A., Eichler, E.E., Holdhus, R., Steen, V.M., Doskeland, S.O., Hurles, M.E., FitzPatrick, D.R., Janssens, V., Houge, G., Haesen, D., Vissers, L.E.L.M., Mehta, S., Parker, M.J., Wright, M., Vogt, J., McKee, S., Tolmie, J.L., Cordeiro, N., Kleefstra, T., Willemsen, M.H., Reijnders, M.R.F., Berland, S., Hayman, E., Lahat, E., Brilstra, E.H., Gassen, K.L. van, Zonneveld-Huijssoon, E., Bie, C.I. De, Hoischen, A., Eichler, E.E., Holdhus, R., Steen, V.M., Doskeland, S.O., Hurles, M.E., FitzPatrick, D.R., and Janssens, V.
- Abstract
Contains fulltext : 154618.pdf (publisher's version ) (Open Access), Here we report inherited dysregulation of protein phosphatase activity as a cause of intellectual disability (ID). De novo missense mutations in 2 subunits of serine/threonine (Ser/Thr) protein phosphatase 2A (PP2A) were identified in 16 individuals with mild to severe ID, long-lasting hypotonia, epileptic susceptibility, frontal bossing, mild hypertelorism, and downslanting palpebral fissures. PP2A comprises catalytic (C), scaffolding (A), and regulatory (B) subunits that determine subcellular anchoring, substrate specificity, and physiological function. Ten patients had mutations within a highly conserved acidic loop of the PPP2R5D-encoded B56delta regulatory subunit, with the same E198K mutation present in 6 individuals. Five patients had mutations in the PPP2R1A-encoded scaffolding Aalpha subunit, with the same R182W mutation in 3 individuals. Some Aalpha cases presented with large ventricles, causing macrocephaly and hydrocephalus suspicion, and all cases exhibited partial or complete corpus callosum agenesis. Functional evaluation revealed that mutant A and B subunits were stable and uncoupled from phosphatase activity. Mutant B56delta was A and C binding-deficient, while mutant Aalpha subunits bound B56delta well but were unable to bind C or bound a catalytically impaired C, suggesting a dominant-negative effect where mutant subunits hinder dephosphorylation of B56delta-anchored substrates. Moreover, mutant subunit overexpression resulted in hyperphosphorylation of GSK3beta, a B56delta-regulated substrate. This effect was in line with clinical observations, supporting a correlation between the ID degree and biochemical disturbance.
- Published
- 2015
26. Composition dependant performance of CexZr1-xO2 mixed-oxide supported WO3 catalysts for the NSR-SCR coupled process
- Author
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Can, F., Berland, S., Royer, S., Courtois, X., Duprez, D., Du site actif au matériau catalytique (E3) (SAMCat ), Institut de Chimie des Milieux et Matériaux de Poitiers (IC2MP), and Université de Poitiers-Centre National de la Recherche Scientifique (CNRS)-Université de Poitiers-Centre National de la Recherche Scientifique (CNRS)
- Subjects
[CHIM.ORGA]Chemical Sciences/Organic chemistry ,[CHIM.CATA]Chemical Sciences/Catalysis ,[CHIM.OTHE]Chemical Sciences/Other ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2013
27. Development of a sensory tool to help biscuit formulation: predictive descriptors of the dough processability
- Author
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Petitjean, C., Roussel, P., Aymard , P., Berland , S., Michon , C., Ingénierie Procédés Aliments (GENIAL), Institut National de la Recherche Agronomique (INRA)-AgroParisTech-Conservatoire National des Arts et Métiers [CNAM] (CNAM)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Institut National de la Recherche Agronomique (INRA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-AgroParisTech-Conservatoire National des Arts et Métiers [CNAM] (CNAM), and Sielinou, Armelle
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[SDV] Life Sciences [q-bio] ,[SDV]Life Sciences [q-bio] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2012
28. Haploinsufficiency of MEIS2 is associated with orofacial clefting and learning disability
- Author
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Johansson, S., Berland, S., Gradek, G.A., Bongers, E., Leeuw, N. de, Pfundt, R.P., Fannemel, M., Rodningen, O., Brendehaug, A., Haukanes, B.I., Hovland, R., Helland, G., Houge, G., Johansson, S., Berland, S., Gradek, G.A., Bongers, E., Leeuw, N. de, Pfundt, R.P., Fannemel, M., Rodningen, O., Brendehaug, A., Haukanes, B.I., Hovland, R., Helland, G., and Houge, G.
- Abstract
Item does not contain fulltext, MEIS2 is a homeodomain-containing transcription factor of the TALE superfamily that has been proven important for development. We confirm and extend a recent single clinical report stating that deletions in MEIS2 can cause cleft palate [Crowley et al. (2010); Am J Med Genet 152A:1326-1327]. Here we report on five additional patients with 15q14 deletions of sizes 0.6, 0.6, 1.0, 1.9, and 4.8 Mb, respectively, all involving MEIS2. In addition, we present a family with four affected individuals and an intragenic 58 kb direct duplication disrupting MEIS2. In total, 7/9 cases had clefting, from mild (submucous cleft palate) to severe (cleft lip and palate), and 3/9 cases had ventricular septal defects. All cases had delayed motor development and most had learning disability, at worst in the mild intellectual disability range. The cases had overlapping facial features (broad forehead, finely arched eyebrows, mildly shortened philtrum, and tented upper lip) but individually they were not considered to be dysmorphic. Our results show that MEIS2 is a gene needed for palate closure. In syndromic cases of cleft palate, MEIS2 should be considered among the candidate genes, for example, in cases without 22q11.2 deletions. (c) 2014 Wiley Periodicals, Inc.
- Published
- 2014
29. Further evidence that de novo missense and truncating variants in ZBTB18 cause intellectual disability with variable features.
- Author
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Cohen, J.S., Srivastava, S., Farwell Hagman, K.D., Shinde, D.N., Huether, R., Darcy, D., Wallerstein, R., Houge, G., Berland, S., Monaghan, K.G., Poretti, A., Wilson, A.L., Chung, W.K., and Fatemi, A.
- Subjects
MISSENSE mutation ,POINT mutation (Biology) ,INTELLECTUAL disabilities ,GENETICS ,CORPUS callosum - Abstract
Identification of rare genetic variants in patients with intellectual disability ( ID) has been greatly accelerated by advances in next generation sequencing technologies. However, due to small numbers of patients, the complete phenotypic spectrum associated with pathogenic variants in single genes is still emerging. Among these genes is ZBTB18 ( ZNF238), which is deleted in patients with 1q43q44 microdeletions who typically present with ID, microcephaly, corpus callosum ( CC) abnormalities, and seizures. Here we provide additional evidence for haploinsufficiency or dysfunction of the ZBTB18 gene as the cause of ID in five unrelated patients with variable syndromic features who underwent whole exome sequencing revealing separate de novo pathogenic or likely pathogenic variants in ZBTB18 (two missense alterations and three truncating alterations). The neuroimaging findings in our cohort ( CC hypoplasia seen in 4/4 of our patients who underwent MRI) lend further support for ZBTB18 as a critical gene for CC abnormalities. A similar phenotype of microcephaly, CC agenesis, and cerebellar vermis hypoplasia has been reported in mice with central nervous system-specific knockout of Zbtb18. Our five patients, in addition to the previously described cases of de novo ZBTB18 variants, add to knowledge about the phenotypic spectrum associated with ZBTB18 haploinsufficiency/dysfunction. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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30. Biomineralization of Schlumbergerella floresiana, a significant carbonate‐producing benthic foraminifer
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Sabbatini, A., primary, Bédouet, L., additional, Marie, A., additional, Bartolini, A., additional, Landemarre, L., additional, Weber, M. X., additional, Gusti Ngurah Kade Mahardika, I., additional, Berland, S., additional, Zito, F., additional, and Vénec‐Peyré, M.‐T., additional
- Published
- 2014
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31. Technological and sensory tools to characterize the consistency and performance of fibre-enriched biscuit doughs
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Villemejane, C., primary, Roussel, P., additional, Berland, S., additional, Aymard, P., additional, and Michon, C., additional
- Published
- 2013
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32. Un outil sensoriel d'aide à la formulation des biscuits basé sur les caractéristiques « texturales » et « structurales » de la pâte.
- Author
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Villemejane, C., Berland, S., Roussel, P., and Michon, C.
- Abstract
Copyright of Industries des Cereales is the property of Association des Anciens Eleves des Ecoles des Metiers des Industries Cerealieres (AEMIC) and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2017
33. A study of the ammonia selectivity on Pt/BaO/Al2O3 model catalyst during the NOx storage and reduction process
- Author
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Le Phuc, N., primary, Courtois, X., additional, Can, F., additional, Berland, S., additional, Royer, S., additional, Marecot, P., additional, and Duprez, D., additional
- Published
- 2011
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- View/download PDF
34. P18 Variant triplet repeats in the CTG expansion of DMPK affect stability of the expanded region and may contribute to unusual symptoms observed in some myotonic dystrophy type 1 cases
- Author
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Braida, C., primary, Stapleton, G., additional, Neil, F., additional, Rhadvanyi, H., additional, Philippe, C., additional, Finsterer, J., additional, Schraen-Maschke, S., additional, Gallano, P., additional, Warner, J., additional, Longman, C., additional, Hilton-Jones, D., additional, Brunner, H., additional, Kamsteeg, E.-J., additional, Berland, S., additional, Catalli, C., additional, Botta, A., additional, and Monckton, D.G., additional
- Published
- 2010
- Full Text
- View/download PDF
35. PHF6 Deletions May Cause Borjeson-Forssman-Lehmann Syndrome in Females
- Author
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Berland, S., primary, Alme, K., additional, Brendehaug, A., additional, Houge, G., additional, and Hovland, R., additional
- Published
- 2010
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36. CARTILAGE INDUCED BY A NATURAL BIOCERAMIC (NACRE) IMPLANTED IN THE KNEE OF SHEEP
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Lopez, E., primary, Delattre, O., additional, Catonne, Y., additional, Borzeix, S., additional, Berland, S., additional, and Balmain, N., additional
- Published
- 1999
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- View/download PDF
37. Demonstration of the capacity of nacre to induce bone formation by human osteoblasts maintained in vitro
- Author
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Lopez, E., primary, Vidal, B., additional, Berland, S., additional, Camprasse, S., additional, Camprasse, G., additional, and Silve, C., additional
- Published
- 1992
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- View/download PDF
38. A model for evaluating injectable bone replacements in the vertebrae of sheep: radiological and histological study - effects of cements liquid on the physical properties of the cement
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Lamghari, M., Huet, H., Laurent, A., Berland, S., and Lopez, E.E.
- Published
- 1999
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39. Reconstruction for human maxillary defects with nacre powder: histological evidence for bone regeneration
- Author
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Atlan, G., Balmain, N., Berland, S., Vidal, B., and Lopez, E.
- Published
- 1997
- Full Text
- View/download PDF
40. Bi-allelic KARS1 pathogenic variants affecting functions of cytosolic and mitochondrial isoforms are associated with a progressive and multisystem disease
- Author
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Paola Goffrini, Felice D'Arco, Enrico Baruffini, Adeline Vanderver, Tamison Jewett, Enrico Bertini, Anya Revah-Politi, Eirik Bratland, Vandana Shashi, Alessandra D'Amico, Camilla Ceccatelli Berti, Vimla Aggarwal, Silvia Maitz, Kwame Anyane-Yeboa, Tara H. Stamper, Francesco Canonico, Gabriel S Kupchik, Andreas Benneche, César Augusto Pinheiro Ferreira Alves, Daniela Longo, Gerarda Cappuccio, Annalaura Torella, Vincenzo Nigro, Nicola Brunetti-Pierri, Marjo S van der Knaap, Siren Berland, Jennifer A. Sullivan, Pediatrics, Amsterdam Neuroscience - Cellular & Molecular Mechanisms, Functional Genomics, Cappuccio, G., Ceccatelli Berti, C., Baruffini, E., Sullivan, J., Shashi, V., Jewett, T., Stamper, T., Maitz, S., Canonico, F., Revah-Politi, A., Kupchik, G. S., Anyane-Yeboa, K., Aggarwal, V., Benneche, A., Bratland, E., Berland, S., D'Arco, F., Alves, C. A., Vanderver, A., Longo, D., Bertini, E., Torella, A., Nigro, V., D'Amico, A., van der Knaap, M. S., Goffrini, P., Brunetti Pierri, N., and Brunetti-Pierri, N.
- Subjects
Lysine-tRNA Ligase ,Male ,Mitochondrion ,lysyl-transfer RNA synthetase ,Cohort Studies ,Cytosol ,KARS ,lysyl‐transfer RNA synthetase ,Child ,Research Articles ,Muscular Dystrophie ,Genetics (clinical) ,Allele ,Genetics ,0303 health sciences ,Progressive microcephaly ,Homozygote ,030305 genetics & heredity ,Phenotype ,Mitochondria ,Pedigree ,Isoenzymes ,mitochondrial disease ,Child, Preschool ,Transfer RNA ,Disease Progression ,Microcephaly ,Female ,KARS1 ,Research Article ,Human ,Gene isoform ,Adolescent ,Mitochondrial disease ,Saccharomyces cerevisiae ,Biology ,03 medical and health sciences ,SDG 3 - Good Health and Well-being ,medicine ,Humans ,Abnormalities, Multiple ,Alleles ,030304 developmental biology ,Organisms, Genetically Modified ,Leukodystrophy ,Brain Diseases, Metabolic, Inborn ,Infant ,LysRS ,medicine.disease ,Isoenzyme ,Cohort Studie - Abstract
KARS1 encodes a lysyl-transfer RNA synthetase (LysRS) that links lysine to its cognate tRNA. Two different KARS1 isoforms exert functional effects in cytosol and mitochondria. Bi-allelic pathogenic variants in KARS1 have been associated to sensorineural hearing and visual loss, neuropathy, seizures, and leukodystrophy. We report the clinical, biochemical and neuroradiological features of nine individuals with KARS1-related disorder carrying 12 different variants with nine of them being novel. The consequences of these variants on the cytosol and/or mitochondrial LysRS were functionally validated in yeast mutants. Most cases presented with severe neurological features including congenital and progressive microcephaly, seizures, developmental delay/intellectual disability, and cerebral atrophy. Oculo-motor dysfunction and immuno-hematological problems were present in six and three cases, respectively. A yeast growth defect of variable severity was detected for most variants on both cytosolic and mitochondrial isoforms. The detrimental effects of two variants on yeast growth were partially rescued by lysine supplementation. Congenital progressive microcephaly, oculo-motor dysfunction and immuno-hematological problems are emerging phenotypes in KARS1-related disorders. The data in yeast emphasize the role of both mitochondrial and cytosolic isoforms in the pathogenesis of KARS1-related disorder and supports the therapeutic potential of lysine supplementation at least in a subset of patients. This article is protected by copyright. All rights reserved.
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- 2021
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41. A study of the ammonia selectivity on Pt/BaO/Al2O3 model catalyst during the NOx storage and reduction process
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Le Phuc, N., Courtois, X., Can, F., Berland, S., Royer, S., Marecot, P., and Duprez, D.
- Subjects
- *
AMMONIA , *PLATINUM catalysts , *NITROGEN oxides , *MIXTURES , *CHEMICAL reduction , *ALUMINUM oxide , *BARIUM , *WATER-gas , *CARBON dioxide - Abstract
Abstract: The ammonia selectivity during the cycling NOx storage reduction process over a model Pt/Ba/Al2O3 catalyst was studied. Firstly, it was demonstrated that, whereas the presence of water or carbon dioxide in the gas mixture have a negative effect on the storage step, the effect of these components have different impacts on the NOx efficiency. Due to their involvement in the reverse water gas shift (RWGS) reaction, the absence of water in the gas mixture leads to a drop of the NOx removal whereas without CO2, an increase of the NOx conversion is observed. It was also showed that the reducer (H2) conversion during the short excursion in rich condition is directly correlated to the NH3 emission. NH3 is emitted since hydrogen is not fully converted, whatever the NOx conversion rate. The ammonia pathway is clearly demonstrated and it was claim that, when H2 remains in the reaction mixture, the ammonia production rate is higher than the ammonia reaction with the remaining NOx in order to form N2. [Copyright &y& Elsevier]
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- 2011
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42. Functional Characterization of ABCA4 Missense Variants Aids Variant Interpretation and Phenotype Prediction in Patients With ABCA4-Retinal Dystrophies.
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Aslaksen S, Aukrust I, Molday L, Holtan JP, Jansson RW, Berland S, Rødahl E, Bredrup C, Bragadóttir R, Bratland E, Molday RS, and Knappskog PM
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- Humans, Female, Male, HEK293 Cells, DNA Mutational Analysis, Pedigree, Adult, Mutation, Missense, Retinal Dystrophies genetics, Retinal Dystrophies metabolism, Retinal Dystrophies diagnosis, ATP-Binding Cassette Transporters genetics, Phenotype
- Abstract
Purpose: Biallelic pathogenic variants in the gene encoding the ATP-binding cassette transporter ABCA4 are the leading cause of irreversible vision loss in inherited retinal dystrophies (IRDs). Interpretation of ABCA4 variants is challenging, due to cis-modifying and hypomorphic variants. We have previously detected 10 missense variants of unknown significance (VUS) in patients with suspected ABCA4-retinal dystrophies (ABCA4-RDs) in Norway. In this study, we functionally characterized the VUS to aid interpretation of the variants and to determine if they are associated with the disease., Methods: The ABCA4 VUS were expressed in HEK293T cells and the ABCA4 expression level and ATPase activity were determined and correlated with the patients' phenotype. The functional data further used for reclassification of the VUS following the American College of Medical Genetics and Genomics (ACMG) guidelines., Results: Of the 10 VUSs, 2 variants, Cys205Phe and Asn415Thr, were categorized as functionally severe. The age at presentation in the 2 patients carrying these variants was divergent and seemed to be driven by the patients' second pathogenic variants Gly1961Glu and c.5461-10T>C, respectively. Three variants, Val643Gly, Pro799Leu, and Val1433Ile were categorized as functionally moderate, and were found in patients with intermediate/late age at presentation. The remaining five variants were categorized as functionally normal/mild. Based on our data, c.614G>T p.(Cys205Phe), c.1244A>C p.(Asn415Thr), and c.2396C>T p.(Pro799Leu) were reclassified to (likely) pathogenic, while 4 of the functionally normal/mild variants could be reclassified to likely benign., Conclusions: Functional analyses of ABCA4 variants are a helpful tool in variant classification and enable us to better predict the disease severity in patients with ABCA4-RDs.
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- 2024
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43. Status epilepticus in POLG disease: a large multinational study.
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Hikmat O, Naess K, Engvall M, Klingenberg C, Rasmussen M, Brodtkorb E, Ostergaard E, de Coo I, Pias-Peleteiro L, Isohanni P, Uusimaa J, Majamaa K, Kärppä M, Ortigoza-Escobar JD, Tangeraas T, Berland S, Harrison E, Biggs H, Horvath R, Darin N, Rahman S, and Bindoff LA
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- Humans, Male, Female, Adult, Adolescent, Young Adult, Retrospective Studies, Child, Europe epidemiology, Child, Preschool, Middle Aged, Infant, Mitochondrial Diseases genetics, Mitochondrial Diseases complications, Mitochondrial Diseases epidemiology, Age of Onset, Status Epilepticus etiology, Status Epilepticus genetics, DNA Polymerase gamma genetics
- Abstract
We aimed to provide a detailed phenotypic description of status epilepticus (SE) in a large cohort of patients with POLG disease and identify prognostic biomarkers to improve the management of this life-threatening condition. In a multinational, retrospective study with data on patients with POLG disease from seven European countries, we identified those who had SE. The age of SE onset, accompanying clinical, laboratory, imaging and genetic findings were analysed. One hundred and ninety-five patients with genetically confirmed POLG disease were recruited, of whom 67% (130/194) had epilepsy. SE was identified in 77% (97/126), with a median age of SE onset of 7 years. SE was the presenting symptom of the disease in 43% (40/93) of those with SE, while 57% (53/93) developed SE during the disease course. Convulsive SE was reported in 97% (91/94) followed by epilepsia partialis continua in 67% (56/84). Liver impairment 78% (74/95), ataxia 69% (60/87), stroke-like episodes 57% (50/88), were the major comorbidities. In the majority (66%; 57/86) with SE this became refractory or super-refractory. The presence of seizures was associated with significantly higher mortality compared to those without (P ≤ 0.001). The median time from SE debut to death was 5 months. SE is a major clinical feature of POLG disease in early and juvenile to adult-onset disease and can be the presenting feature or arise as part of a multisystem disease. It is associated with high morbidity and mortality, with the majority of patients with SE going on to develop refractory or super-refractory SE., (© 2024. The Author(s).)
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- 2024
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44. Clinical and genetic characteristics of congenital hyperinsulinism in Norway: A nationwide cohort study.
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Velde CD, Molnes J, Berland S, Njølstad PR, and Molven A
- Abstract
Purpose: Congenital hyperinsulinism (CHI) is a rare, monogenic disease characterized by excessive insulin secretion. We aimed to evaluate all probands with suspected CHI in Norway registered over the past two decades., Methods: The study included 98 probands. Clinical data were cumulated from medical records. All probands were screened for variants in the genes ABCC8 and KCNJ11. Other CHI-related genes were Sanger-sequenced as indicated by the patients' phenotype (N=75) or analyzed by next-generation sequencing employing a panel of 30 CHI-related genes (N=23)., Results: Twenty-one probands (21%) received a diagnosis other than CHI, the most common being idiopathic ketotic hypoglycemia (9%) or syndromic hyperinsulinism (4%). In the final cohort of 77 CHI probands, genetic findings were revealed in 46 (60%). ABCC8 variants were most common (N=40) and five novel variants were identified. One proband harbored both the pathogenic GCK variant p.(Ala456Val) and the ABCC8 variant p.(Gly505Cys). Although most ABCC8 variants caused immediate disease onset with severe hypoglycemia and were diazoxide-unresponsive, eight probands had a heterozygous, apparently dominant variant with milder phenotype. Two probands had pathogenic variants in GLUD1, whereas variants in HADH, HNF4A, KCNJ11, and HK1 were identified in one proband each, the latter being non-coding. Neurologic sequelae were reported in 53% of the CHI probands. Of non-surgically treated probands, 43% had spontaneous resolution. The minimum birth prevalence of CHI in Norway is 1:19,400 live births., Main Conclusions: Individuals with disease-causing ABCC8 variants dominated our cohort. Patients with known genetic etiology had earlier and more severe disease-onset than genetically unsolved patients., (© The Author(s) 2024. Published by Oxford University Press on behalf of the Endocrine Society.)
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- 2024
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45. Epidemiology and natural history of POLG disease in Norway: a nationwide cohort study.
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Kristensen E, Mathisen L, Berland S, Klingenberg C, Brodtkorb E, Rasmussen M, Tangeraas T, Bliksrud YT, Rahman S, Bindoff LA, and Hikmat O
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- Humans, Norway epidemiology, Adult, Male, Female, Middle Aged, Adolescent, Young Adult, Aged, Child, Child, Preschool, Infant, Retrospective Studies, Prevalence, Registries, Mitochondrial Diseases epidemiology, Mitochondrial Diseases genetics, Age of Onset, Disease Progression, Cohort Studies, DNA Polymerase gamma genetics
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Objective: To investigate the prevalence and natural history of POLG disease in the Norwegian population., Methods: A national, population-based, retrospective study using demographic, clinical, and genetic data of patients with genetically confirmed POLG disease. The patients were diagnosed between 2002 and 2022, and were included into the Norwegian POLG Patient Registry. Patients were stratified according to age at disease onset (early <12 years, juvenile to adult 12-40 years, late ≥40 years) and resident region., Results: Ninety-one patients were included. The point prevalence of POLG disease was 1:149,253. Birth prevalence was 1:48,780. Median age at clinical onset was 16 years (range: 2 months to 70 years). Onset occurred early in 35% (32 out of 91), juvenile-adult in 55% (50 out of 91) and late in 10% (9 out of 91). A distinct seasonal pattern in disease onset was observed, with 57% (52 out of 91) presenting between May and August. Forty-five patients (49%) had acute exacerbations that required intensive care, and this affected 72% of those in the early-onset group. The mortality rate was 54% (49 out of 91), with a median time from disease onset to death of 3 years (range: 1 month to 36 years)., Interpretation: We provide the point prevalence and birth prevalence of POLG disease in the first nationwide study in which epidemiological and clinical data were integrated. Seasonal variations in clinical onset may offer valuable insights into disease mechanisms and modifying factors. The findings from this study are crucial for quantifying the disease burden, and contribute to evidence-based healthcare planning., (© 2024 The Authors. Annals of Clinical and Translational Neurology published by Wiley Periodicals LLC on behalf of American Neurological Association.)
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- 2024
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46. Travelling in Microphis (Teleostei: Syngnathidae) Otoliths with Two-Dimensional X-ray Fluorescence Maps: Twists and Turns on the Road to Strontium Incorporation.
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Lord C, Haÿ V, Medjoubi K, Berland S, and Keith P
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Indo-Pacific tropical island streams are home to freshwater pipefish ( Microphis spp., Syngnathidae). Otoliths were used to uncover life history traits in four species, including a New Caledonian endemic. All four species present the same methodological challenge: their otoliths are small, fragile and mute for growth marks using basic observation tools. Strontium (Sr) is calcium substituent in the mineral lattice, driven by salinity conditions, and thus useful to study diadromous migrations. Synchrotron-based scanning X-ray fluorescence 2D high-resolution mapping allowed us to tackle the global and hyperfine strontium (Sr) distribution. We developed analytical imaging processes to retrieve biological information from otoliths from the data generated via synchrotron analysis. We uncovered plasticity in the life cycle: all species were amphidromous, apart from some freshwater residents from New Caledonia. Understanding life cycle modalities is crucial to categorize species distribution limits and to implement adapted conservation measures, especially when endemic species are at stake. 2D fine-scale images outlined the heterogeneity of Sr distribution: in addition to the trivial Sr incorporation driven by environmental ionic conditions, there is an unusual mosaic arrangement of Sr distribution and we hypothesize that biological control, especially growth during the early life stages, may sometimes overrule stoichiometry. This shows that it is worth studying otolith formation and element integration at imbricated scales, and our methods and results provide a strong basis for future works and prospects in otolith science.
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- 2024
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47. Refining the 9q34.3 microduplication syndrome reveals mild neurodevelopmental features associated with a distinct global DNA methylation profile.
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Rots D, Rooney K, Relator R, Kerkhof J, McConkey H, Pfundt R, Marcelis C, Willemsen MH, van Hagen JM, Zwijnenburg P, Alders M, Õunap K, Reimand T, Fjodorova O, Berland S, Liahjell EB, Bojovic O, Kriek M, Ruivenkamp C, Bonati MT, Brunner HG, Vissers LELM, Sadikovic B, and Kleefstra T
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- Humans, Male, Female, Child, Child, Preschool, Developmental Disabilities genetics, Developmental Disabilities pathology, Craniofacial Abnormalities genetics, Craniofacial Abnormalities pathology, Adolescent, Phenotype, DNA Methylation genetics, Chromosomes, Human, Pair 9 genetics, Intellectual Disability genetics, Intellectual Disability pathology, Chromosome Duplication genetics, Chromosome Deletion, Neurodevelopmental Disorders genetics, Neurodevelopmental Disorders pathology, Heart Defects, Congenital, Histone-Lysine N-Methyltransferase
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Precise regulation of gene expression is important for correct neurodevelopment. 9q34.3 deletions affecting the EHMT1 gene result in a syndromic neurodevelopmental disorder named Kleefstra syndrome. In contrast, duplications of the 9q34.3 locus encompassing EHMT1 have been suggested to cause developmental disorders, but only limited information has been available. We have identified 15 individuals from 10 unrelated families, with 9q34.3 duplications <1.5 Mb in size, encompassing EHMT1 entirely. Clinical features included mild developmental delay, mild intellectual disability or learning problems, autism spectrum disorder, and behavior problems. The individuals did not consistently display dysmorphic features, congenital anomalies, or growth abnormalities. DNA methylation analysis revealed a weak DNAm profile for the cases with 9q34.3 duplication encompassing EHMT1, which could segregate the majority of the affected cases from controls. This study shows that individuals with 9q34.3 duplications including EHMT1 gene present with mild non-syndromic neurodevelopmental disorders and DNA methylation changes different from Kleefstra syndrome., (© 2024 The Authors. Clinical Genetics published by John Wiley & Sons Ltd.)
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- 2024
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48. Late-Onset Molybdenum Cofactor Deficiency Type A: A Treatable Cause of Developmental Delay.
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Lund AM, Berland S, Tangeraas T, Christensen M, Confer N, Squires L, and Brannsether B
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- Humans, Molybdoferredoxin, Developmental Disabilities etiology, Developmental Disabilities diagnosis, Metal Metabolism, Inborn Errors complications, Metal Metabolism, Inborn Errors diagnosis
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Molybdenum cofactor deficiency classically presents in neonates with intractable seizures; however, milder cases generally present before age 2 years with developmental delays and may go undiagnosed. Early diagnosis, and safe, US Food and Drug Administration-approved substrate replacement are critical to preserve neurologic function. This article discusses 2 children who presented with late-onset molybdenum cofactor deficiency type A.
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- 2024
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49. CAMTA1-related disorder: Phenotypic and molecular characterization of 26 new individuals and literature review.
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Al-Kateb H, Au PYB, Berland S, Cogne B, Demurger F, Fluss J, Isidor B, Frank LM, Varvagiannis K, Koolen DA, McDonald M, Montgomery S, Moortgat S, Deprez M, Karadurmus D, Paulsen J, Reis A, Rieger M, Vasileiou G, Willing M, and Shinawi M
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- Humans, Brain metabolism, Calcium-Binding Proteins genetics, Genotype, Phenotype, Trans-Activators genetics, Intellectual Disability genetics, Transcription Factors genetics
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Calmodulin-binding transcriptional activator 1 (CAMTA1) is highly expressed in the brain and plays a role in cell cycle regulation, cell differentiation, regulation of long-term memory, and initial development, maturation, and survival of cerebellar neurons. The existence of human neurological phenotypes, including cerebellar dysfunction with variable cognitive and behavioral abnormalities (CECBA), associated with CAMTA1 variants, has further supported its role in brain functions. In this study, we phenotypically and molecularly characterize the largest cohort of individuals (n = 26) with 23 novel CAMTA1 variants (frameshift-7, nonsense-6, splicing-1, initiation codon-1, missense-5, and intragenic deletions-3) and compare the findings with all previously reported cases (total = 53). We show that the most notable phenotypic findings are developmental delay/intellectual disability, unsteady or uncoordinated gait, hypotonia, behavioral problems, and eye abnormalities. In addition, there is a high incidence of dysarthria, dysgraphia, microcephaly, gastrointestinal abnormalities, sleep difficulties, and nonspecific brain MRI findings; a few of which have been under-reported. More than one third of the variants in this cohort were inherited from an asymptomatic or mildly affected parent suggesting reduced penetrance and variable expressivity. Our cohort provides a comprehensive characterization of the spectrum of phenotypes and genotypes among individuals with CECBA and the large data will facilitate counseling and formulating management plans and surveillance recommendations for these individuals., (© 2023 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.)
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- 2024
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50. Improving diagnostic precision in primary ovarian insufficiency using comprehensive genetic and autoantibody testing.
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Vogt EC, Bratland E, Berland S, Berentsen R, Lund A, Björnsdottir S, Husebye E, and Øksnes M
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- Humans, Female, Mutation, Cross-Sectional Studies, Autoantibodies, Prospective Studies, Fragile X Mental Retardation Protein genetics, Primary Ovarian Insufficiency diagnosis, Primary Ovarian Insufficiency genetics
- Abstract
Study Question: Is it possible to find the cause of primary ovarian insufficiency (POI) in more women by extensive screening?, Summary Answer: Adding next generation sequencing techniques including a POI-associated gene panel, extended whole exome sequencing data, as well as specific autoantibody assays to the recommended diagnostic investigations increased the determination of a potential etiological diagnosis of POI from 11% to 41%., What Is Known Already: POI affects ∼1% of women. Clinical presentations and pathogenic mechanisms are heterogeneous and include genetic, autoimmune, and environmental factors, but the underlying etiology remains unknown in the majority of cases., Study Design, Size, Duration: Prospective cross-sectional study of 100 women with newly diagnosed POI of unknown cause consecutively referred to Haukeland University Hospital, Bergen, Norway, January 2019 to December 2021., Participants/materials, Setting, Methods: In addition to standard recommended diagnostic investigations including screening for chromosomal anomalies and premutations in the fragile X mental retardation 1 gene (FMR1) we used whole exome sequencing, including targeted analysis of 103 ovarian-related genes, and assays of autoantibodies against steroid cell antigens., Main Results and the Role of Chance: We identified chromosomal aberrations in 8%, FMR1 premutations in 3%, genetic variants related to POI in 16%, and autoimmune POI in 3%. Furthermore in 11% we identified POI associated genetic Variants of unknown signifcance (VUS). A homozygous pathogenic variant in the ZSWIM7 gene (NM_001042697.2) was found in two women, corroborating this as a novel cause of monogenic POI. No associations between phenotypes and genotypes were found., Limitations, Reasons for Caution: Use of candidate genetic and autoimmune markers limit the possibility to discover new markers. To further investigate the genetic variants, family studies would have been useful. We found a relatively high proportion of genetic variants in women from Africa and lack of genetic diversity in the genomic databases can impact diagnostic accuracy., Wider Implications of the Findings: Since no specific clinical or biochemical markers predicted the underlying cause of POI discussion of which tests should be part of diagnostic screening in clinical practice remains open. New technology has altered the availability and effectiveness of genetic testing, and cost-effectiveness analyses are required to aid sustainable diagnostics., Study Funding/competing Interest(s): The study was supported by grants and fellowships from Stiftelsen Kristian Gerhard Jebsen, the Novonordisk Foundation, the Norwegian Research Council, University of Bergen, and the Regional Health Authorities of Western Norway. The authors declare no conflict of interest., Trial Registration Number: NCT04082169., (© The Author(s) 2023. Published by Oxford University Press on behalf of European Society of Human Reproduction and Embryology.)
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- 2024
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